RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy499
(122 letters)
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 44.2 bits (104), Expect = 2e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 34 AKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ P TIR + + N VH +D E A E
Sbjct: 94 VQAAAPGTIRGDFALETQFNLVHGSDSAESAQRE 127
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 41.6 bits (97), Expect = 2e-06
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 25 FSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
+ + E P TIR + + N +H +D E A E
Sbjct: 88 SRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQ 132
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 40.8 bits (95), Expect = 4e-06
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 33 TAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
L P TIR + EN +H +D + A E
Sbjct: 88 QGNILTPGTIRGDLANDIRENLIHASDSEDSAVDE 122
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 39.2 bits (91), Expect = 2e-05
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 25 FSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ K+ P TIR + EN +H + EDA E
Sbjct: 84 VRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQRE 126
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 38.4 bits (89), Expect = 4e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ +P TIR + N +H +D + A E
Sbjct: 96 ADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKE 128
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 37.3 bits (86), Expect = 1e-04
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 24 SFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
S + + + P TIR + N VH +D PE+ E
Sbjct: 87 SARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKRE 130
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 36.1 bits (83), Expect = 3e-04
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 16/83 (19%)
Query: 1 MAEPFLETHPKDTFDPDP---SYKGNSFSFIFYQETA-------------KELRPNTIRA 44
+ + + F + KG + ++ TIR
Sbjct: 44 ILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRG 103
Query: 45 MYGRNSVENAVHVTDLPEDAFFE 67
+ +N +H +D A E
Sbjct: 104 DFCLEVSKNVIHGSDSVASANKE 126
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 35.8 bits (82), Expect = 4e-04
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 5 FLETHPKDTFDPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDA 64
F+ + P + S + P +IR +G + N + +D E A
Sbjct: 66 FITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVESA 125
Query: 65 FFE 67
E
Sbjct: 126 NRE 128
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 35.4 bits (81), Expect = 5e-04
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 24 SFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ I P TIR + + N +H +D E A E
Sbjct: 83 TGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKE 126
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 35.0 bits (80), Expect = 8e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ P TIR + +N +H +D E A E
Sbjct: 97 ADAPPGTIRGDFCIEVGKNLIHGSDSVESARRE 129
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 34.6 bits (79), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
++ P TIR N +H +D PE A E
Sbjct: 96 QKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDE 128
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 34.3 bits (78), Expect = 0.002
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 35 KELRPNTIRAMYGRNS----------VENAVHVTDLPEDAFFE 67
P TIR Y +S V N VH +D P +A E
Sbjct: 128 HSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAERE 170
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 33.4 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ TIR + + +N VH +D E+A E
Sbjct: 95 AQAAEGTIRKDFATSIDKNTVHGSDSLENAKIE 127
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 33.1 bits (75), Expect = 0.003
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 25 FSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ A++ P TIR YG + N +H +D ++ E
Sbjct: 85 VRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANE 127
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 32.3 bits (73), Expect = 0.006
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ A + +++ N +H +D E A E
Sbjct: 95 KDAAPGTIRGDFGLEVSDAICNVIHASDSKESAERE 130
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 32.3 bits (73), Expect = 0.006
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ P TIR +G ++ NA+H +D A E
Sbjct: 94 SDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKE 126
>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 24.8 bits (54), Expect = 3.1
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 10 PKDTFDPDPSYK----GNSFSFIFYQETAKELRPNTIRA 44
P D + GN + +Q+ P+ I +
Sbjct: 196 PYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIAS 234
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 236
Score = 24.3 bits (53), Expect = 4.3
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 93 PIGQVLSLSLTCLQNPMKIVPNGNRARLI 121
+G+ +S L ++NP++I +G R +LI
Sbjct: 123 KLGEEISAGL--MENPVQIHSHGGRVKLI 149
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3,
Nqo3, C-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 82
Score = 23.2 bits (50), Expect = 5.0
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 1 MAEPFLETHPKD 12
A L HP+
Sbjct: 26 AARAELWAHPET 37
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
protein 36, VPS36 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 130
Score = 23.7 bits (51), Expect = 6.3
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 4 PFLETHPKDTFDPDPSYKGNSF---SF------IFYQETAKELR 38
FL P+ F SF +F Q T + L
Sbjct: 82 GFLTRSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALE 125
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 23.2 bits (49), Expect = 8.4
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 26 SFIFYQETAKELRPNTIRAMYGR 48
F+ K L NT+ A Y R
Sbjct: 8 QFLDALWLEKNLAENTLNA-YRR 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,435
Number of extensions: 18585
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 22
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)