BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4990
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 88/96 (91%), Positives = 93/96 (96%)
Query: 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAE 61
+++NV+DEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR E DAE
Sbjct: 67 LVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAE 126
Query: 62 KAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
KA NDLNNRWFGGRPVY+ELSPVTDFREACCRQYEM
Sbjct: 127 KAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEM 162
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 AELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 AELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 VELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 85/93 (91%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYD+FFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREED E+AV
Sbjct: 68 HVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+L+NRWF G+ V+ ELSPVTDFRE+CCRQYEM
Sbjct: 128 AELSNRWFNGQAVHGELSPVTDFRESCCRQYEM 160
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
T E+ E +D F+ED+F E KYGE+E++ VCDN+GDHLVGNVY++F+ EE A+ A++D
Sbjct: 65 TQRELAEQFDAFYEDMFCEF-SKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDD 123
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYE 96
LN+RW+ RPVYAELSPVTDFREACCRQ+E
Sbjct: 124 LNSRWYSQRPVYAELSPVTDFREACCRQHE 153
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
+ E+MQEH+++F+ED++ E K+GE+E +NVCDNL DH++GNVY++FR EE A A N
Sbjct: 69 IDPEKMQEHFEDFYEDIYEEL-SKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHN 127
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYE 96
L R++ GRP+ E SPVTDFREA CRQ+E
Sbjct: 128 ALQGRFYSGRPIIVEYSPVTDFREATCRQFE 158
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
+ E++Q +++F+ED+F E KYGEIE ++VCDN DH++GNVY++FR E+ A +A+
Sbjct: 69 IDPEKIQADFEDFYEDIFEELS-KYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQ 127
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYE 96
L R++ GRP+ E SPV+DFREA CRQYE
Sbjct: 128 ALTGRYYSGRPIIVEFSPVSDFREATCRQYE 158
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 10 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69
++QEH+++FFED+F E K+GEIE +N+CDNL DH++GNVY++F+ E+ A A+ L
Sbjct: 73 KIQEHFEDFFEDLFEEL-GKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQG 131
Query: 70 RWFGGRPVYAELSPVTDFREACCRQYE 96
R++ GRP+ A+ SPVTDFREA CRQYE
Sbjct: 132 RFYSGRPIIADFSPVTDFREATCRQYE 158
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 10 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69
++Q+H+++F+ED+F E +K+GE+E +NVCDNL DH++GNVY+ F+ E+ A A+ L
Sbjct: 73 KIQDHFEDFYEDIFEEL-NKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQG 131
Query: 70 RWFGGRPVYAELSPVTDFREACCRQYE 96
R++ GRP+ A+ SPVTDFREA CRQYE
Sbjct: 132 RFYSGRPIIADFSPVTDFREATCRQYE 158
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 233 SEEETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 291
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 292 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 322
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 228 SEEETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 286
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 287 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 317
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
TDEE+++ Y+ F+EDV E K+GE+ VC N HL GNVY+ ++ + A A +
Sbjct: 219 TDEEIEQSYEEFYEDVHTEFL-KFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSS 277
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQY 95
+N R+F G+ + E VT ++ A C +Y
Sbjct: 278 MNGRYFAGKQITCEFVAVTRWKVAICGEY 306
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+ DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 219 SEEETYQQFLDFYHDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 277
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +EM
Sbjct: 278 FNGRWYAGRQLQCEFCPVTRWKVAICGLFEM 308
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
++EE+ + + +F+ DV E + G++ + V NL HL GNVY++++ EED + A +
Sbjct: 231 FSEEEIYQQFLDFYYDVLPEFKS-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFS 289
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 290 VFNGRWYAGRQLQCEFCPVTRWKMAICGLFEV 321
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
TDEE + Y+ F+EDV E KYGE+ VC N HL GNVY+ +R E A A
Sbjct: 296 TDEEAELCYEEFYEDVHTEFL-KYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 354
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQY 95
+N R+F G+ V E ++ ++ A C +Y
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEY 383
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
+DV EC++KYG++ + V N +G +++KF + AEKA+ L+ RWFGGR + A
Sbjct: 530 QDVKEECDEKYGKVVHIAVVPNE----LGQIFVKFENADFAEKAITGLHQRWFGGRTIKA 585
Query: 80 ELSPVTDF 87
+ P TD+
Sbjct: 586 SILPETDY 593
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 290 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITA 345
Query: 80 E 80
+
Sbjct: 346 Q 346
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 80 E 80
+
Sbjct: 345 Q 345
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 80 E 80
+
Sbjct: 345 Q 345
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 333 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 391
Query: 83 PVTDFR 88
+ FR
Sbjct: 392 NLDKFR 397
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 329 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 387
Query: 83 PVTDFR 88
+ FR
Sbjct: 388 NLDKFR 393
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ E + D+ +V EC KYG + + + + G+ ++ ++++F
Sbjct: 421 MVLRNMVGPEDID--DDLEGEVMEEC-GKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFS 477
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ LNNRWF GR V AEL
Sbjct: 478 DAGEMNKAIQALNNRWFAGRKVVAEL 503
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 27 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81
++K GE E+ + + ++++F + KA+ DLN RWF GR V AE+
Sbjct: 471 QEKQGEEEDAEI--------IVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEV 517
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 16 DNFFEDVFVECEDKYGEIEEMNVCD----NLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 71
D ++V EC KYG + + + + N H ++++F R E+ KA+ DL+ R+
Sbjct: 298 DELEDEVGGEC-GKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRY 356
Query: 72 FGGRPVYA 79
FGGR V A
Sbjct: 357 FGGRTVRA 364
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 27 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81
++K GE E+ + + ++++F + KA+ LN RWFGGR V AE+
Sbjct: 505 QEKQGEEEDAEI--------IVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEV 551
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 27 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81
++K GE E+ + + ++++F + KA+ LN RWFGGR V AE+
Sbjct: 505 QEKQGEEEDAEI--------IVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEV 551
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E ++ Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEDEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFREA 90
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYKRG 412
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E ++ Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEDEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFREA 90
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYKRG 412
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 3 ISNVTDEEMQEH--YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
+SN+ + + +E +D +D +E +K+G + + V N GNVY+K A
Sbjct: 422 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAA 478
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDF 87
AVN L+ RWF G+ + A P+ +
Sbjct: 479 IAAVNALHGRWFAGKMITAAYVPLPTY 505
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 3 ISNVTDEEMQEH--YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
+SN+ + + +E +D +D +E +K+G + + V N GNVY+K A
Sbjct: 428 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAA 484
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDF 87
AVN L+ RWF G+ + A P+ +
Sbjct: 485 IAAVNALHGRWFAGKMITAAYVPLPTY 511
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 3 ISNVTDEEMQEH--YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
+SN+ + + +E +D +D +E +K+G + + V N GNVY+K A
Sbjct: 428 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAA 484
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDF 87
AVN L+ RWF G+ + A P+ +
Sbjct: 485 IAAVNALHGRWFAGKMITAAYVPLPTY 511
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E + E G++ + VC D + +G Y+ F + ED EKA+ DLN GRP
Sbjct: 64 EALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRP 121
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
++ F E+A KA+ ++N R G+P+Y L+ D R + Q E ++ +N
Sbjct: 379 FVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRS---QLEQQIQARN 428
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 9 EEMQEHYDN---------FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
EEM+ ++ N F E+ F + + YG+I + + + G ++ F E
Sbjct: 225 EEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHES 284
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDFR-EACCRQYE 96
A KAV++LN++ G+ +Y + R E +QYE
Sbjct: 285 AVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYE 322
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 30 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 89
YG I V G H G ++ F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 317 YGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERK 375
Query: 90 AC-CRQYEMVLETKNADP 106
A QY L T A P
Sbjct: 376 AILTNQYMQRLATMRAMP 393
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 31 GEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77
G I + VC ++ +G YI F++ DAE+A++ +N GRP+
Sbjct: 35 GPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPI 82
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
++ F +DA KAV ++N R G+P+Y L+ D R++ Q E ++ +N
Sbjct: 429 FVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKS---QLEASIQARN 478
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 9 EEMQEHYDNFF---------EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
EEM+ ++ N + ++ F E K+GE+ ++ + G ++ F E
Sbjct: 234 EEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEA 293
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKNADPVCTREKAKKKMGV 119
A +AV++LN + F G+ +Y + +++E E + + EKA K GV
Sbjct: 294 AAQAVDELNGKDFRGQDLYVGRAQ---------KKHEREEELRKSYEAARLEKANKYQGV 344
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E + E + G + + VC D + +G Y+ + D EKA+ +LN GRP
Sbjct: 73 EAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRP 130
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 30 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 89
YG I V G H G ++ F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 317 YGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERK 375
Query: 90 AC-CRQYEMVLETKNADP 106
A QY L T A P
Sbjct: 376 AILTNQYMQRLATMRAMP 393
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 31 GEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77
G I + VC ++ + YI F++ DAE+A++ +N GRP+
Sbjct: 35 GPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPI 82
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 30 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 89
YG I V G H G ++ F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 317 YGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERK 375
Query: 90 AC-CRQYEMVLETKNADP 106
A QY L T A P
Sbjct: 376 AILTNQYMQRLATMRAMP 393
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 31 GEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77
G I + VC ++ +G YI F++ DAE+A++ +N GRP+
Sbjct: 35 GPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPI 82
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 27 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81
++K GE E+ + + ++++F + KA+ LN RWF GR V AE+
Sbjct: 499 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 545
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 27 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81
++K GE E+ + + ++++F + KA+ LN RWF GR V AE+
Sbjct: 500 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 546
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 30 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 89
YG I V G H G ++ F E+A KAV ++N R G +P+Y L+ + R+
Sbjct: 317 YGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Query: 90 AC-CRQYEMVLET 101
A QY L T
Sbjct: 376 AILTNQYMQRLST 388
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78
+D+F ++G++ + V + H ++ F + E+A+KAV +N + GR +Y
Sbjct: 207 LQDLF----SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 79 A-----------ELS-PVTDFREACCRQYEMV-LETKNADPVCTREKAKKKMGVYEISGV 125
A EL ++ R+Y+ V L KN D +K +K+ Y GV
Sbjct: 263 AGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPY---GV 319
Query: 126 STSA 129
TSA
Sbjct: 320 ITSA 323
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 31 GEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77
G I + VC ++ +G YI F++ DAE+A++ +N G+P+
Sbjct: 35 GPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPI 82
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 6 VTDEEMQ--EHYDNFFEDVFVECEDKYGEIEEMNVC----DNLGDHLVGNVYIKFRREED 59
V+ +E++ E Y++ ED+ +E KYG + ++ + L VG V++++ +
Sbjct: 455 VSADELKDDEEYEDIMEDMRLEA-GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDG 513
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90
A KA ++ R FGG PV A P F A
Sbjct: 514 ATKAKTAMHGRKFGGNPVVAVFYPENKFSSA 544
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 62
I N+ E ++ + + F ++GEI +++ + D G ++ + E A+K
Sbjct: 265 IKNLDTEITEQEFSDLF--------GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 63 AVNDLNNRWFGGRPVYAELSPVTDFREACCRQ-YE-MVLETKN 103
AV++LN++ + G+ +Y + RE R+ YE M LE N
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMN 359
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E + E + G + + VC D + +G Y+ F ED EKA+++LN GRP
Sbjct: 93 EAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRP 150
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
+ I N+ DE E F +G I + + G ++ + E+A
Sbjct: 366 LFIKNLQDEVDDERLKAEFS--------AFGTITSAKIMTDEQGKSKGFGFVCYTTPEEA 417
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
KAV ++N R G+P+Y L+ + R + Q E ++ +N
Sbjct: 418 NKAVTEMNQRMLAGKPLYVALAQRKEVRRS---QLEAQIQARN 457
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 9 EEMQEHYDNFF---------EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREE 58
+EM+ ++ N + +D F +KYG++ ++ D G ++ F E
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 59 DAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKNADPVCTREKAKKKMG 118
DA KAV +LN + F G+ +Y + +++E E + + +EKA K G
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQ---------KKHEREEELRKSYEAARQEKASKYQG 345
Query: 119 V 119
V
Sbjct: 346 V 346
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
++ F +DA KAV ++N R +P+Y L+ D R+ Q E ++ +N
Sbjct: 437 FVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRK---NQLEQSIQARN 486
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E + E + G + + VC D + +G Y+ + D EKA+ +LN GRP
Sbjct: 74 EAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRP 131
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 6 VTDEEMQEH--YDNFFEDVFVECEDKYGEIEEMNVC------DNLGDHLVGNVYIKFRRE 57
VT +E+ + Y + ED+ ECE K+G + +NV + + +G V++++
Sbjct: 462 VTVDELNDDDDYQDILEDMRTECE-KFGAL--VNVVIPRPNPNGVPTPGLGKVFLEYADV 518
Query: 58 EDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90
+ + KA LN R FGG V A P F E
Sbjct: 519 DGSSKARQGLNGRKFGGNQVVAVFYPENKFSEG 551
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
++ F E+A KA+ ++N R F G+P+Y L+ D R + Q E ++ +N
Sbjct: 380 FVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRS---QLEQQIQARN 429
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E E G++ + VC D + +G Y+ + + ED EKA+ +LN GRP
Sbjct: 65 EATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRP 122
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
++ F +DA KAV ++N R G+P+Y L+ D R+ Q E ++ +N
Sbjct: 438 FVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRK---NQLEASIQARN 487
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 9 EEMQEHYDNFF-EDVFVECED--------KYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
EEM+ ++ N + +++ +E D KYG++ ++ + G ++ F E
Sbjct: 239 EEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHEC 298
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKNADPVCTREKAKKKMGV 119
A KAV +LN + F G+ +Y + +++E E + + EKA K GV
Sbjct: 299 AAKAVEELNGKEFRGQDLYVGRAQ---------KKHEREEELRKSYEAARLEKANKYQGV 349
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E + E + G + + VC D + +G Y+ + D EKA+ +LN GRP
Sbjct: 78 EAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRP 135
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKN 103
++ F ++A KAV ++N R G+P+Y L+ D R + Q E ++ +N
Sbjct: 427 FVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS---QLEASIQARN 476
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76
E + E G++ + VC D + +G Y+ + D E+A+ DLN G+P
Sbjct: 61 EAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKP 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,415,621
Number of Sequences: 539616
Number of extensions: 1999307
Number of successful extensions: 5588
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 5314
Number of HSP's gapped (non-prelim): 353
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)