Query psy4990
Match_columns 130
No_of_seqs 154 out of 1137
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:59:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202|consensus 99.9 5.7E-23 1.2E-27 159.0 6.4 121 4-124 67-193 (260)
2 TIGR01645 half-pint poly-U bin 99.8 1.7E-18 3.7E-23 148.9 9.9 86 2-91 519-609 (612)
3 KOG0120|consensus 99.7 9.5E-18 2.1E-22 141.0 9.0 88 2-90 404-497 (500)
4 KOG0147|consensus 99.7 1.3E-17 2.9E-22 139.7 5.7 85 2-91 448-534 (549)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.7 6.5E-17 1.4E-21 135.2 9.4 88 2-90 414-507 (509)
6 TIGR01622 SF-CC1 splicing fact 99.7 4.9E-17 1.1E-21 134.5 8.5 85 2-90 367-453 (457)
7 smart00361 RRM_1 RNA recogniti 99.6 1.8E-15 3.9E-20 96.5 8.7 64 16-80 3-70 (70)
8 KOG1548|consensus 99.6 1.4E-15 3E-20 122.2 8.1 84 1-88 269-356 (382)
9 PF13893 RRM_5: RNA recognitio 99.5 4.2E-14 9E-19 86.1 8.2 56 22-82 1-56 (56)
10 KOG1996|consensus 99.5 1.6E-14 3.6E-19 114.4 6.4 84 3-90 287-372 (378)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.3E-13 2.7E-18 110.3 8.1 75 2-84 273-348 (352)
12 PF00076 RRM_1: RNA recognitio 99.4 3.8E-13 8.3E-18 83.5 6.8 69 2-78 2-70 (70)
13 PLN03134 glycine-rich RNA-bind 99.4 8.5E-13 1.8E-17 95.4 7.9 64 19-83 48-112 (144)
14 KOG0148|consensus 99.4 1.2E-12 2.6E-17 102.8 7.8 100 20-120 77-188 (321)
15 KOG0124|consensus 99.4 1.3E-12 2.8E-17 106.5 6.6 85 2-90 451-540 (544)
16 KOG0107|consensus 99.3 6.3E-12 1.4E-16 93.4 5.5 71 2-84 14-84 (195)
17 PF14259 RRM_6: RNA recognitio 99.3 3.3E-11 7.2E-16 75.6 8.0 58 20-78 13-70 (70)
18 TIGR01628 PABP-1234 polyadenyl 99.2 2.4E-11 5.1E-16 103.5 7.9 65 20-85 300-364 (562)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 2.7E-11 5.9E-16 96.9 7.6 63 20-83 18-81 (352)
20 smart00362 RRM_2 RNA recogniti 99.2 7.4E-11 1.6E-15 71.9 7.5 58 20-79 14-71 (72)
21 smart00360 RRM RNA recognition 99.2 9.8E-11 2.1E-15 71.0 8.0 60 19-79 10-70 (71)
22 KOG0113|consensus 99.2 8.3E-11 1.8E-15 93.5 7.5 68 14-82 110-178 (335)
23 KOG4207|consensus 99.2 2.8E-11 6.1E-16 92.3 4.5 67 15-82 23-90 (256)
24 TIGR01659 sex-lethal sex-letha 99.2 6.2E-11 1.3E-15 96.6 6.7 64 19-83 121-185 (346)
25 cd00590 RRM RRM (RNA recogniti 99.1 3.9E-10 8.5E-15 69.0 8.1 62 19-81 13-74 (74)
26 TIGR01622 SF-CC1 splicing fact 99.1 2.7E-10 5.9E-15 94.3 9.6 64 19-83 200-264 (457)
27 TIGR01659 sex-lethal sex-letha 99.1 3.2E-10 7E-15 92.4 9.7 65 20-85 208-275 (346)
28 PLN03120 nucleic acid binding 99.1 2.3E-10 5E-15 89.9 7.2 72 1-83 7-78 (260)
29 KOG0127|consensus 99.1 3.2E-10 6.9E-15 96.1 7.3 71 19-90 131-202 (678)
30 KOG0122|consensus 99.1 3.8E-10 8.3E-15 87.6 6.8 63 20-83 204-267 (270)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 4.5E-10 9.7E-15 94.6 7.2 72 2-84 279-350 (481)
32 KOG0148|consensus 99.0 5.5E-10 1.2E-14 88.0 7.0 60 19-84 178-237 (321)
33 TIGR01628 PABP-1234 polyadenyl 99.0 6.8E-10 1.5E-14 94.6 7.9 75 1-83 3-78 (562)
34 TIGR01645 half-pint poly-U bin 99.0 8.2E-10 1.8E-14 95.6 7.8 63 20-83 219-282 (612)
35 KOG0144|consensus 99.0 5.7E-10 1.2E-14 92.4 5.7 69 18-87 137-208 (510)
36 KOG0125|consensus 99.0 9.8E-10 2.1E-14 88.4 6.5 62 20-83 111-172 (376)
37 KOG0114|consensus 99.0 1.3E-09 2.8E-14 75.2 6.1 73 15-90 28-101 (124)
38 KOG0130|consensus 99.0 6.8E-10 1.5E-14 79.9 4.9 65 17-82 84-149 (170)
39 TIGR01642 U2AF_lg U2 snRNP aux 98.9 2.7E-09 5.8E-14 89.4 7.8 63 20-83 310-373 (509)
40 PLN03121 nucleic acid binding 98.9 3.9E-09 8.6E-14 82.1 7.3 71 2-83 9-79 (243)
41 COG0724 RNA-binding proteins ( 98.9 3.3E-09 7.1E-14 78.7 6.6 66 17-83 127-193 (306)
42 TIGR01648 hnRNP-R-Q heterogene 98.9 3.3E-09 7.2E-14 91.5 7.1 56 20-83 248-305 (578)
43 PLN03213 repressor of silencin 98.9 4.2E-09 9.1E-14 88.9 7.0 81 1-93 13-95 (759)
44 KOG0123|consensus 98.9 5.3E-09 1.2E-13 86.0 7.5 78 2-89 80-157 (369)
45 TIGR01648 hnRNP-R-Q heterogene 98.9 3.5E-09 7.7E-14 91.3 6.4 63 19-82 72-135 (578)
46 KOG0146|consensus 98.9 5.3E-09 1.1E-13 82.7 6.6 67 19-86 33-102 (371)
47 KOG0105|consensus 98.9 7.8E-09 1.7E-13 78.0 6.8 62 20-84 21-82 (241)
48 KOG0145|consensus 98.8 8.5E-09 1.8E-13 81.3 6.3 64 19-83 55-119 (360)
49 KOG4206|consensus 98.8 1.7E-08 3.6E-13 77.5 7.3 78 2-85 13-90 (221)
50 KOG0145|consensus 98.8 1.5E-08 3.2E-13 80.0 6.9 75 1-83 281-356 (360)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 1.5E-08 3.2E-13 85.5 7.4 69 2-83 6-76 (481)
52 KOG0121|consensus 98.8 2.1E-08 4.6E-13 71.6 6.5 64 18-82 49-113 (153)
53 KOG0108|consensus 98.8 1.4E-08 3E-13 85.1 6.1 71 15-86 28-99 (435)
54 KOG0126|consensus 98.7 6.6E-10 1.4E-14 83.3 -2.2 67 15-82 45-112 (219)
55 KOG0111|consensus 98.7 1.4E-08 3.1E-13 78.3 3.9 63 21-84 26-89 (298)
56 KOG0144|consensus 98.7 5.8E-08 1.3E-12 80.7 6.7 67 19-86 48-118 (510)
57 KOG0147|consensus 98.7 4.4E-08 9.4E-13 83.0 6.0 69 14-83 287-356 (549)
58 KOG0124|consensus 98.6 4E-08 8.6E-13 80.6 5.0 62 19-81 127-189 (544)
59 KOG0117|consensus 98.6 1.1E-07 2.3E-12 79.3 7.5 57 18-82 272-328 (506)
60 KOG0117|consensus 98.6 8.2E-08 1.8E-12 80.0 6.8 65 17-82 95-161 (506)
61 KOG0149|consensus 98.6 5.5E-08 1.2E-12 75.3 4.9 68 15-84 22-90 (247)
62 KOG4208|consensus 98.6 1.4E-07 3.1E-12 71.7 6.6 66 19-85 63-130 (214)
63 KOG0131|consensus 98.5 1.7E-07 3.7E-12 70.3 5.5 63 20-83 24-87 (203)
64 KOG0131|consensus 98.5 2E-07 4.4E-12 69.9 5.6 74 1-82 99-174 (203)
65 KOG0109|consensus 98.5 3.7E-07 8.1E-12 72.8 7.4 55 20-82 17-71 (346)
66 KOG0110|consensus 98.5 3.9E-07 8.4E-12 79.3 7.1 69 14-83 524-596 (725)
67 KOG0109|consensus 98.5 2.4E-07 5.2E-12 73.9 5.3 55 20-82 93-147 (346)
68 KOG0123|consensus 98.4 6.3E-07 1.4E-11 73.8 7.1 65 18-85 11-75 (369)
69 KOG0127|consensus 98.4 7.3E-07 1.6E-11 76.1 6.5 67 15-82 302-375 (678)
70 KOG0415|consensus 98.3 1.2E-06 2.6E-11 71.7 4.8 66 20-86 254-321 (479)
71 COG5175 MOT2 Transcriptional r 98.3 2.1E-06 4.6E-11 69.9 6.2 58 24-83 139-201 (480)
72 KOG0110|consensus 98.3 1.3E-06 2.7E-11 76.2 5.0 71 14-85 622-693 (725)
73 KOG4661|consensus 98.2 4.1E-06 8.8E-11 72.2 5.9 62 20-82 420-482 (940)
74 KOG4212|consensus 98.1 1.1E-05 2.5E-10 67.6 6.9 64 20-83 59-122 (608)
75 KOG2314|consensus 98.0 1.2E-05 2.5E-10 69.1 6.5 74 15-89 74-149 (698)
76 KOG0153|consensus 98.0 2.1E-05 4.6E-10 64.0 6.9 62 17-84 240-302 (377)
77 KOG0146|consensus 97.9 8.1E-06 1.7E-10 64.9 3.3 62 20-82 300-362 (371)
78 KOG4212|consensus 97.8 2.1E-05 4.5E-10 66.1 4.6 70 1-82 539-608 (608)
79 KOG0132|consensus 97.8 5.5E-05 1.2E-09 66.9 6.5 59 18-82 434-492 (894)
80 KOG4209|consensus 97.7 2.6E-05 5.7E-10 60.6 3.4 62 19-82 115-177 (231)
81 PF08952 DUF1866: Domain of un 97.7 0.00019 4.1E-09 52.2 7.0 60 14-82 45-104 (146)
82 KOG4660|consensus 97.7 1.9E-05 4.1E-10 67.4 1.9 54 20-78 90-143 (549)
83 KOG0533|consensus 97.7 0.00016 3.4E-09 56.7 6.5 68 17-85 95-162 (243)
84 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00042 9.1E-09 47.4 6.2 63 18-82 18-89 (100)
85 KOG1190|consensus 97.4 0.00056 1.2E-08 57.0 7.4 70 20-94 313-382 (492)
86 KOG4454|consensus 97.3 0.00048 1E-08 53.4 5.1 70 13-83 16-85 (267)
87 KOG0226|consensus 97.3 0.0002 4.3E-09 56.5 3.0 53 28-80 212-265 (290)
88 PF11608 Limkain-b1: Limkain b 97.2 0.0014 3E-08 43.7 6.0 60 16-85 17-77 (90)
89 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.0011 2.4E-08 40.1 4.9 40 19-64 14-53 (53)
90 KOG0106|consensus 97.2 0.00032 7E-09 54.1 3.0 57 19-83 15-71 (216)
91 KOG4205|consensus 97.0 0.00043 9.3E-09 56.0 2.5 66 15-82 16-82 (311)
92 KOG1548|consensus 96.8 0.0038 8.3E-08 51.1 6.3 63 20-83 149-219 (382)
93 PF08777 RRM_3: RNA binding mo 96.8 0.0034 7.3E-08 43.1 5.1 58 19-82 15-77 (105)
94 KOG0116|consensus 96.8 0.0037 8E-08 52.6 6.2 62 19-82 302-364 (419)
95 KOG0106|consensus 96.5 0.0016 3.6E-08 50.2 2.2 55 20-82 114-168 (216)
96 KOG0151|consensus 96.5 0.0048 1E-07 54.7 5.1 62 20-82 189-254 (877)
97 PF04059 RRM_2: RNA recognitio 96.4 0.029 6.2E-07 38.1 7.7 52 31-82 28-84 (97)
98 PF04847 Calcipressin: Calcipr 96.1 0.022 4.9E-07 42.9 6.6 63 17-85 7-71 (184)
99 KOG1365|consensus 96.1 0.0059 1.3E-07 50.9 3.5 75 15-90 290-367 (508)
100 KOG4205|consensus 96.1 0.0059 1.3E-07 49.5 3.4 62 19-82 111-173 (311)
101 KOG2068|consensus 95.9 0.0029 6.3E-08 51.4 0.8 58 24-82 99-160 (327)
102 PF15023 DUF4523: Protein of u 95.9 0.048 1E-06 39.9 7.0 55 20-82 105-159 (166)
103 KOG1456|consensus 95.8 0.027 5.8E-07 46.9 6.2 62 19-85 136-199 (494)
104 KOG4285|consensus 95.7 0.029 6.2E-07 45.4 5.5 51 20-77 211-261 (350)
105 KOG0120|consensus 95.5 0.012 2.6E-07 50.4 3.2 63 19-82 303-366 (500)
106 KOG4211|consensus 95.4 0.087 1.9E-06 45.0 7.9 65 14-82 19-83 (510)
107 KOG1190|consensus 95.3 0.085 1.8E-06 44.4 7.4 79 20-103 165-250 (492)
108 KOG1995|consensus 95.2 0.018 3.9E-07 47.2 3.1 64 19-83 80-152 (351)
109 KOG1457|consensus 94.8 0.15 3.3E-06 39.9 7.2 61 21-82 50-115 (284)
110 KOG4210|consensus 94.5 0.014 3.1E-07 46.7 0.9 65 17-83 197-262 (285)
111 PF11767 SET_assoc: Histone ly 94.3 0.26 5.6E-06 31.2 6.1 52 19-79 14-65 (66)
112 KOG1456|consensus 93.9 0.24 5.2E-06 41.4 6.7 60 20-84 303-362 (494)
113 KOG4211|consensus 93.7 0.11 2.4E-06 44.4 4.5 70 18-89 116-186 (510)
114 KOG1855|consensus 93.6 0.062 1.4E-06 45.3 2.9 51 17-68 243-307 (484)
115 KOG4307|consensus 93.4 0.14 3.1E-06 45.7 5.0 65 16-81 878-943 (944)
116 KOG1457|consensus 91.5 0.31 6.7E-06 38.3 4.1 60 2-72 214-273 (284)
117 KOG0128|consensus 91.5 0.1 2.2E-06 47.1 1.6 66 17-83 748-813 (881)
118 PF07576 BRAP2: BRCA1-associat 91.4 0.76 1.7E-05 31.8 5.6 43 31-74 39-81 (110)
119 KOG4676|consensus 90.7 0.54 1.2E-05 39.5 5.0 71 3-82 12-86 (479)
120 KOG2416|consensus 90.5 0.25 5.5E-06 43.3 3.1 70 20-94 459-531 (718)
121 PF08675 RNA_bind: RNA binding 88.9 1.4 3.1E-05 29.3 5.0 42 20-69 23-64 (87)
122 PF03880 DbpA: DbpA RNA bindin 87.7 1.7 3.7E-05 27.5 4.8 42 32-81 32-73 (74)
123 KOG4206|consensus 87.5 2.5 5.4E-05 32.8 6.3 54 24-82 165-219 (221)
124 KOG2135|consensus 86.7 0.51 1.1E-05 40.4 2.3 59 19-84 387-445 (526)
125 KOG3152|consensus 85.9 0.35 7.7E-06 38.4 1.0 55 21-76 90-157 (278)
126 KOG1365|consensus 85.8 1.3 2.8E-05 37.3 4.2 61 15-77 171-235 (508)
127 KOG0112|consensus 84.6 0.98 2.1E-05 41.4 3.2 57 21-83 471-529 (975)
128 KOG0115|consensus 84.3 1 2.2E-05 35.8 2.9 54 20-74 46-99 (275)
129 KOG2591|consensus 83.2 1.2 2.5E-05 39.1 3.0 57 20-82 190-249 (684)
130 KOG0128|consensus 82.7 0.23 4.9E-06 45.0 -1.5 62 17-79 679-741 (881)
131 KOG4213|consensus 80.2 4.9 0.00011 30.5 5.1 48 17-67 121-170 (205)
132 KOG4574|consensus 79.9 1.5 3.3E-05 40.1 2.7 60 20-85 313-374 (1007)
133 PF03439 Spt5-NGN: Early trans 79.4 3.1 6.8E-05 27.0 3.5 37 32-72 33-69 (84)
134 KOG4307|consensus 76.5 1.2 2.5E-05 40.2 0.9 66 19-85 448-514 (944)
135 PRK08559 nusG transcription an 73.2 14 0.00031 26.6 5.9 47 18-69 21-68 (153)
136 PF10309 DUF2414: Protein of u 72.4 21 0.00045 22.2 6.1 41 20-67 19-62 (62)
137 KOG0804|consensus 71.0 9.4 0.0002 32.8 5.0 52 21-74 90-142 (493)
138 KOG4019|consensus 69.7 7.1 0.00015 29.6 3.6 37 46-82 50-87 (193)
139 KOG0105|consensus 65.7 16 0.00034 28.2 4.8 47 21-74 131-177 (241)
140 PF15513 DUF4651: Domain of un 65.4 26 0.00057 21.9 5.0 24 16-40 5-28 (62)
141 PTZ00397 macrophage migration 60.2 19 0.00041 24.4 4.1 50 3-72 66-115 (116)
142 KOG4660|consensus 57.3 12 0.00026 32.8 3.2 53 30-82 413-470 (549)
143 KOG2193|consensus 54.7 1.8 3.9E-05 36.9 -2.1 63 22-86 96-158 (584)
144 KOG0112|consensus 54.3 4.3 9.4E-05 37.4 0.1 63 19-82 386-448 (975)
145 PF01187 MIF: Macrophage migra 54.1 9.7 0.00021 25.9 1.8 50 3-72 64-113 (114)
146 PF13820 Nucleic_acid_bd: Puta 52.9 72 0.0016 23.3 6.3 54 10-69 14-67 (149)
147 PRK13817 ribosome-binding fact 51.1 41 0.00089 23.3 4.6 55 30-87 31-90 (119)
148 PF11823 DUF3343: Protein of u 50.5 20 0.00044 22.3 2.8 47 49-100 3-49 (73)
149 KOG1999|consensus 50.0 35 0.00076 32.0 5.1 38 44-82 207-244 (1024)
150 PRK14548 50S ribosomal protein 48.2 77 0.0017 20.8 5.6 46 20-67 35-81 (84)
151 KOG3323|consensus 47.0 53 0.0011 23.9 4.7 50 2-57 93-148 (149)
152 PF02714 DUF221: Domain of unk 45.7 25 0.00054 27.8 3.2 33 50-84 1-33 (325)
153 smart00596 PRE_C2HC PRE_C2HC d 45.1 41 0.00089 21.5 3.5 59 20-82 2-62 (69)
154 PF07530 PRE_C2HC: Associated 44.9 49 0.0011 20.7 3.9 59 20-82 2-62 (68)
155 PF03467 Smg4_UPF3: Smg-4/UPF3 44.6 30 0.00065 25.6 3.3 42 45-86 53-99 (176)
156 PTZ00450 macrophage migration 42.7 74 0.0016 21.8 4.8 48 3-72 66-113 (113)
157 KOG1134|consensus 42.5 64 0.0014 29.3 5.6 44 45-88 303-346 (728)
158 KOG4849|consensus 41.7 48 0.001 27.9 4.3 63 20-83 95-160 (498)
159 PF06837 Fijivirus_P9-2: Fijiv 40.9 28 0.00062 26.6 2.6 39 2-40 42-84 (214)
160 TIGR00405 L26e_arch ribosomal 39.9 28 0.0006 24.6 2.4 33 33-69 28-60 (145)
161 CHL00123 rps6 ribosomal protei 39.9 1.1E+02 0.0024 20.3 6.8 52 13-65 21-80 (97)
162 COG3309 VapD Uncharacterized v 38.4 83 0.0018 21.2 4.3 39 14-64 20-58 (96)
163 COG0858 RbfA Ribosome-binding 37.5 43 0.00093 23.3 3.0 63 21-87 25-94 (118)
164 PF14268 YoaP: YoaP-like 36.5 20 0.00044 20.8 1.0 38 51-88 4-43 (44)
165 PRK00521 rbfA ribosome-binding 36.1 1.2E+02 0.0026 20.8 5.1 52 32-86 36-93 (120)
166 PLN02805 D-lactate dehydrogena 35.8 76 0.0017 27.8 4.9 63 21-85 282-347 (555)
167 KOG0862|consensus 35.7 30 0.00066 26.8 2.1 35 17-58 86-120 (216)
168 PF08734 GYD: GYD domain; Int 35.2 1.3E+02 0.0028 19.6 6.7 64 2-69 3-69 (91)
169 TIGR00082 rbfA ribosome-bindin 33.9 1.4E+02 0.003 20.4 5.1 53 32-87 34-92 (114)
170 smart00738 NGN In Spt5p, this 33.7 30 0.00065 22.6 1.7 22 48-69 60-81 (106)
171 PF08776 VASP_tetra: VASP tetr 33.3 81 0.0018 18.0 3.1 17 10-26 4-20 (40)
172 KOG0129|consensus 32.5 1.2E+02 0.0026 26.5 5.4 37 29-65 394-431 (520)
173 PRK13818 ribosome-binding fact 32.0 1.6E+02 0.0035 20.4 5.2 55 30-87 31-92 (121)
174 PRK13259 regulatory protein Sp 30.5 99 0.0022 20.8 3.8 37 32-69 2-39 (94)
175 PF03468 XS: XS domain; Inter 30.0 1.7E+02 0.0037 20.1 5.0 47 20-69 32-78 (116)
176 cd06404 PB1_aPKC PB1 domain is 29.5 1.7E+02 0.0037 19.3 6.6 48 14-68 21-69 (83)
177 TIGR03636 L23_arch archaeal ri 29.4 1.6E+02 0.0035 18.9 5.6 47 19-67 27-74 (77)
178 COG0018 ArgS Arginyl-tRNA synt 28.2 3.5E+02 0.0075 24.0 7.7 61 17-84 58-126 (577)
179 smart00356 ZnF_C3H1 zinc finge 27.7 45 0.00098 16.1 1.4 19 88-106 3-21 (27)
180 PRK11230 glycolate oxidase sub 27.5 1.1E+02 0.0025 26.2 4.5 55 29-85 216-270 (499)
181 PF08544 GHMP_kinases_C: GHMP 27.2 1.5E+02 0.0033 18.0 6.0 45 19-68 36-80 (85)
182 COG5507 Uncharacterized conser 26.8 94 0.002 21.4 3.1 23 44-66 63-85 (117)
183 PF02033 RBFA: Ribosome-bindin 25.9 2E+02 0.0043 18.9 4.8 35 32-69 30-65 (104)
184 TIGR00387 glcD glycolate oxida 25.2 1.5E+02 0.0032 24.6 4.7 55 29-85 159-213 (413)
185 PRK11183 D-lactate dehydrogena 24.8 1.3E+02 0.0027 26.7 4.3 68 21-90 239-311 (564)
186 KOG2891|consensus 24.7 17 0.00037 29.6 -0.9 52 20-72 176-247 (445)
187 COG5594 Uncharacterized integr 24.2 64 0.0014 29.8 2.5 43 46-88 356-399 (827)
188 PF04026 SpoVG: SpoVG; InterP 23.9 1.7E+02 0.0037 19.1 3.9 25 32-56 2-27 (84)
189 KOG2187|consensus 22.8 46 0.001 29.1 1.3 38 45-82 61-98 (534)
190 KOG0129|consensus 22.5 1.8E+02 0.004 25.4 4.8 42 20-65 274-324 (520)
191 cd06408 PB1_NoxR The PB1 domai 22.4 2.4E+02 0.0052 18.6 5.4 45 14-67 23-67 (86)
192 PF01076 Mob_Pre: Plasmid reco 22.2 3.3E+02 0.0072 20.1 5.8 33 15-47 100-135 (196)
193 PRK11634 ATP-dependent RNA hel 21.3 3E+02 0.0065 24.4 6.1 34 49-83 528-561 (629)
194 PF02234 CDI: Cyclin-dependent 21.2 53 0.0012 19.4 1.0 27 5-31 6-32 (51)
195 PRK11901 hypothetical protein; 20.6 2.1E+02 0.0045 23.7 4.5 41 28-69 264-306 (327)
196 COG2039 Pcp Pyrrolidone-carbox 20.1 1.3E+02 0.0027 23.2 3.0 29 58-86 17-45 (207)
No 1
>KOG2202|consensus
Probab=99.88 E-value=5.7e-23 Score=159.03 Aligned_cols=121 Identities=60% Similarity=0.949 Sum_probs=109.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 4 SNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 4 ~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
..+++++++.+|+++++||..|++.|||.|++++|..+...|..|+|||+|...++|++|+..|||+||+|++|.+.+.|
T Consensus 67 ~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 67 QFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 35788999999999999999999449999999999999889999999999999999999999999999999999999999
Q ss_pred CcchhhhhccccccccCCCCCCc------ccChhHHhhhhccccccC
Q psy4990 84 VTDFREACCRQYEMVLETKNADP------VCTREKAKKKMGVYEISG 124 (130)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~g~~~~~~ 124 (130)
+++|++++|++++.+.|++|+.+ .+++..++.++|+.+.+.
T Consensus 147 vT~~rea~C~~~e~~~C~rG~~CnFmH~k~~sr~L~r~l~~~~~~~~ 193 (260)
T KOG2202|consen 147 VTDFREAICGQFERTECSRGGACNFMHVKRLSRSLRRELYGRQRKRY 193 (260)
T ss_pred cCchhhhhhcccccccCCCCCcCcchhhhhhhHHHHHHhhhhhhccc
Confidence 99999999999999999998774 356666777777776654
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=1.7e-18 Score=148.89 Aligned_cols=86 Identities=23% Similarity=0.435 Sum_probs=76.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-----CCceeEEEEEecChHHHHHHHHHhCCcEeCCee
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~ 76 (130)
+.|+|+++|+++ +|++||++|| +|||.|++|.|+.+.. .|..|++||+|.+.++|.+|++.||||||+||+
T Consensus 519 L~NMv~~~elde---dl~eDV~eEC-~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~ 594 (612)
T TIGR01645 519 LRNMVTPQDIDE---FLEGEIREEC-GKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRT 594 (612)
T ss_pred EeCCCChHHhHH---HHHHHHHHHh-hcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeE
Confidence 579999998876 4779999999 7999999999998542 356889999999999999999999999999999
Q ss_pred EEEEeccCcchhhhh
Q psy4990 77 VYAELSPVTDFREAC 91 (130)
Q Consensus 77 I~v~~~~~~~~~~~~ 91 (130)
|.|+||+.++|..+.
T Consensus 595 V~a~~yd~~~f~~~~ 609 (612)
T TIGR01645 595 VVAEAYDQILFDHAD 609 (612)
T ss_pred EEEEEcCHHHhhccc
Confidence 999999999997653
No 3
>KOG0120|consensus
Probab=99.73 E-value=9.5e-18 Score=140.96 Aligned_cols=88 Identities=27% Similarity=0.529 Sum_probs=80.6
Q ss_pred cccCCCHHHH--HHHHHHHHHHHHHHhhhccCCeeEEEEecC-CC---CCceeEEEEEecChHHHHHHHHHhCCcEeCCe
Q psy4990 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LG---DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 75 (130)
Q Consensus 2 ~~~~~s~~e~--~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~---~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr 75 (130)
..|+|+++|+ +++|++|.+||+.+| ++||.|.+|.|+++ .. ..+.|+|||+|++.+++++|+.+|+||.|+||
T Consensus 404 L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 404 LTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 3588999999 468999999999999 89999999999998 43 35789999999999999999999999999999
Q ss_pred eEEEEeccCcchhhh
Q psy4990 76 PVYAELSPVTDFREA 90 (130)
Q Consensus 76 ~I~v~~~~~~~~~~~ 90 (130)
+|.++||++++|+..
T Consensus 483 tVvtsYydeDkY~~r 497 (500)
T KOG0120|consen 483 TVVASYYDEDKYHAR 497 (500)
T ss_pred EEEEEecCHHHhhcc
Confidence 999999999999875
No 4
>KOG0147|consensus
Probab=99.70 E-value=1.3e-17 Score=139.75 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=76.8
Q ss_pred cccCCCHHH-HHHHHH-HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 2 IISNVTDEE-MQEHYD-NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e-~~~~~~-~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+-|||+|.+ ++..|+ +|.+||.++| +|||+|.+|.|..++ .|+|||+|.+.+.|..|+++||||||+||.|++
T Consensus 448 L~nMFdpstete~n~d~eI~edV~Eec-~k~g~v~hi~vd~ns----~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita 522 (549)
T KOG0147|consen 448 LSNMFDPSTETEPNWDQEIREDVIEEC-GKHGKVCHIFVDKNS----AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITA 522 (549)
T ss_pred HhhcCCcccccCcchhhHHHHHHHHHH-HhcCCeeEEEEccCC----CceEEEecCcHHHHHHHHHHHhhhhhccceeEE
Confidence 568999984 455666 9999999999 799999999999974 499999999999999999999999999999999
Q ss_pred EeccCcchhhhh
Q psy4990 80 ELSPVTDFREAC 91 (130)
Q Consensus 80 ~~~~~~~~~~~~ 91 (130)
.|.+.+.|....
T Consensus 523 ~~~~~~~Y~~~F 534 (549)
T KOG0147|consen 523 KYLPLERYHSKF 534 (549)
T ss_pred EEeehhhhhhhC
Confidence 999999997753
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=6.5e-17 Score=135.23 Aligned_cols=88 Identities=27% Similarity=0.468 Sum_probs=77.1
Q ss_pred cccCCCHHHH--HHHHHHHHHHHHHHhhhccCCeeEEEEecCC----CCCceeEEEEEecChHHHHHHHHHhCCcEeCCe
Q psy4990 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNVCDNL----GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 75 (130)
Q Consensus 2 ~~~~~s~~e~--~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~----~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr 75 (130)
+.|+++++++ ++.|+++.+||+++| ++||.|++|.|+++. .+.+.|+|||+|.+.++|.+|+..|||++|+||
T Consensus 414 l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr 492 (509)
T TIGR01642 414 LTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDR 492 (509)
T ss_pred eccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4567777776 458999999999999 699999999999752 234679999999999999999999999999999
Q ss_pred eEEEEeccCcchhhh
Q psy4990 76 PVYAELSPVTDFREA 90 (130)
Q Consensus 76 ~I~v~~~~~~~~~~~ 90 (130)
+|.+.|+++..|...
T Consensus 493 ~v~~~~~~~~~~~~~ 507 (509)
T TIGR01642 493 VVVAAFYGEDCYKAG 507 (509)
T ss_pred EEEEEEeCHHHhhcc
Confidence 999999999988754
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=4.9e-17 Score=134.51 Aligned_cols=85 Identities=25% Similarity=0.450 Sum_probs=75.2
Q ss_pred cccCCCHHHH--HHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~--~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+.|++++.+. +.+|.++++||+++| ++||.|++|.|..+ ...|++||+|.+.++|.+|++.|||++|+||.|.|
T Consensus 367 l~n~~~~~~~~~~~~~~~~~~dv~~e~-~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~ 442 (457)
T TIGR01622 367 LSNMFDPATEEEPNFDNEILDDVKEEC-SKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITA 442 (457)
T ss_pred EecCCCCcccccchHHHHHHHHHHHHH-HhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEE
Confidence 4566666544 458889999999999 79999999999865 45799999999999999999999999999999999
Q ss_pred EeccCcchhhh
Q psy4990 80 ELSPVTDFREA 90 (130)
Q Consensus 80 ~~~~~~~~~~~ 90 (130)
.|++++.|...
T Consensus 443 ~~~~~~~~~~~ 453 (457)
T TIGR01622 443 AFVVNDVYDMS 453 (457)
T ss_pred EEEcHHHHHhh
Confidence 99999998776
No 7
>smart00361 RRM_1 RNA recognition motif.
Probab=99.64 E-value=1.8e-15 Score=96.47 Aligned_cols=64 Identities=45% Similarity=0.782 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhccCCeeEEE-Eec-CCC--CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 16 DNFFEDVFVECEDKYGEIEEMN-VCD-NLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 16 ~~~~eDi~~e~~~kfG~I~~v~-i~~-~~~--~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
++|.+.+.++| .+||.|.+|. |+. +.+ ++++|++||+|.+.++|.+|++.|||++|+||+|+|+
T Consensus 3 ~~l~~~~~~~~-~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEE-EYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHH-HhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 46778888999 6999999996 443 333 6789999999999999999999999999999999873
No 8
>KOG1548|consensus
Probab=99.62 E-value=1.4e-15 Score=122.25 Aligned_cols=84 Identities=30% Similarity=0.636 Sum_probs=75.4
Q ss_pred CcccCCCHHHHHH---HHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 1 MIISNVTDEEMQE---HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 1 ~~~~~~s~~e~~~---~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
|+.|+|+|+++.. ...++.+||+++| .|||.|.+|.|..+ |+.|.|-|.|.+.++|..||+.|+||||+||+|
T Consensus 269 i~kn~Ftp~~~~~~~~l~~dlkedl~eec-~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 269 ILKNMFTPEDFEKNPDLLNDLKEDLTEEC-EKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred EeeecCCHHHhccCHHHHHHHHHHHHHHH-HHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 5789999998865 4889999999999 69999999999975 789999999999999999999999999999999
Q ss_pred EEEeccC-cchh
Q psy4990 78 YAELSPV-TDFR 88 (130)
Q Consensus 78 ~v~~~~~-~~~~ 88 (130)
+|+.++. .+|.
T Consensus 345 ~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 345 TASIWDGKTKFQ 356 (382)
T ss_pred EEEEeCCcceee
Confidence 9999953 4443
No 9
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.55 E-value=4.2e-14 Score=86.05 Aligned_cols=56 Identities=30% Similarity=0.636 Sum_probs=50.6
Q ss_pred HHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 22 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 22 i~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
|++.| ++||+|.+|.+..+. .|++||+|.+.++|.+|++.|||++|+|++|+|+|+
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57889 799999999998863 589999999999999999999999999999999884
No 10
>KOG1996|consensus
Probab=99.53 E-value=1.6e-14 Score=114.42 Aligned_cols=84 Identities=31% Similarity=0.515 Sum_probs=73.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC--CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~--~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
.|+|++.+.++ +|++++++|| .|||+|.+|.|...++ .+-...+||+|+..++|.+|+-.||||+|+||.+.+.
T Consensus 287 rnmVg~gevd~---elede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 287 RNMVGAGEVDE---ELEDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred hhhcCcccccH---HHHHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 46788877776 5668999999 5999999999986543 3557889999999999999999999999999999999
Q ss_pred eccCcchhhh
Q psy4990 81 LSPVTDFREA 90 (130)
Q Consensus 81 ~~~~~~~~~~ 90 (130)
|+++++|...
T Consensus 363 Fyn~ekfs~~ 372 (378)
T KOG1996|consen 363 FYNLEKFSNL 372 (378)
T ss_pred eccHHhhhhh
Confidence 9999998754
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.3e-13 Score=110.32 Aligned_cols=75 Identities=13% Similarity=0.269 Sum_probs=64.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||.+++++- -.++|++.| ++||.|.+|+|+.+. ++.++|++||+|.+.++|.+|+..|||..|+||.|.|+
T Consensus 273 fV~NL~~~~-------~e~~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 273 FVYNLSPDT-------DETVLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred EEeCCCCCC-------CHHHHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 556666532 235899999 799999999999765 67899999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
|...
T Consensus 345 ~~~~ 348 (352)
T TIGR01661 345 FKTN 348 (352)
T ss_pred EccC
Confidence 9853
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=3.8e-13 Score=83.51 Aligned_cols=69 Identities=29% Similarity=0.512 Sum_probs=59.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
+|.++++.-.+ +||++.| ++||.|..+.+..+..++.+|++||+|.+.++|.+|+..|||..++|+.|+
T Consensus 2 ~v~nlp~~~t~-------~~l~~~f-~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 2 YVGNLPPDVTE-------EELRDFF-SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEESETTTSSH-------HHHHHHH-HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEcCCCCcCCH-------HHHHHHH-HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 45555554333 4889999 699999999998876678999999999999999999999999999999985
No 13
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=8.5e-13 Score=95.41 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++||++.| ++||.|.+|.|+.+. +++++|++||+|++.++|++|+..|||..++|+.|+|.+..
T Consensus 48 e~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 48 DASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred HHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46999999 699999999998764 57889999999999999999999999999999999999884
No 14
>KOG0148|consensus
Probab=99.39 E-value=1.2e-12 Score=102.84 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=82.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhh--------h
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE--------A 90 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~--------~ 90 (130)
++|++.| .+||+|.+++|+++. +.+++|++||.|-+.++|+.||..|||.|+++|.|+..++......+ -
T Consensus 77 e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfde 155 (321)
T KOG0148|consen 77 EKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDE 155 (321)
T ss_pred HHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHH
Confidence 5889999 699999999999875 57899999999999999999999999999999999999995443222 2
Q ss_pred hccccccccCCC--CCCc-ccChhHHhhhhccc
Q psy4990 91 CCRQYEMVLETK--NADP-VCTREKAKKKMGVY 120 (130)
Q Consensus 91 ~~~~~~~~~~~~--g~~~-~~~~~~~~~~~g~~ 120 (130)
..++..+++|+. |+-. +++++..+++|.+|
T Consensus 156 V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f 188 (321)
T KOG0148|consen 156 VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF 188 (321)
T ss_pred HhccCCCCCceEEeCCcCccccHHHHHHhcccC
Confidence 355667777753 4333 48999999998776
No 15
>KOG0124|consensus
Probab=99.36 E-value=1.3e-12 Score=106.51 Aligned_cols=85 Identities=21% Similarity=0.516 Sum_probs=73.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-----CCceeEEEEEecChHHHHHHHHHhCCcEeCCee
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~ 76 (130)
.-|+|+|.++++ +++.+|.+|| +|||.|..|.|..... ...-..+||+|....++.+|..+||||||+||.
T Consensus 451 LRNMV~P~DiDe---~LegEi~EEC-gKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~ 526 (544)
T KOG0124|consen 451 LRNMVDPKDIDE---DLEGEITEEC-GKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRK 526 (544)
T ss_pred EeccCChhhhhh---HHHHHHHHHH-hcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCce
Confidence 358899988877 4668999999 8999999999986432 123568999999999999999999999999999
Q ss_pred EEEEeccCcchhhh
Q psy4990 77 VYAELSPVTDFREA 90 (130)
Q Consensus 77 I~v~~~~~~~~~~~ 90 (130)
|.++.|+...|..+
T Consensus 527 VvAE~YDQ~~FD~~ 540 (544)
T KOG0124|consen 527 VVAEVYDQERFDNS 540 (544)
T ss_pred eehhhhhhhccccc
Confidence 99999998888665
No 16
>KOG0107|consensus
Probab=99.27 E-value=6.3e-12 Score=93.39 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=60.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
||.+|...- .+.||..+| .+||.|.+|+|..+ +.||+||+|+++.+|.+|+..|||+.|.|..|.|++
T Consensus 14 YVGnL~~~a-------~k~eLE~~F-~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 14 YVGNLGSRA-------TKRELERAF-SKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred EeccCCCCc-------chHHHHHHH-HhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 455555533 345788899 79999999999986 379999999999999999999999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
...
T Consensus 82 S~G 84 (195)
T KOG0107|consen 82 STG 84 (195)
T ss_pred ecC
Confidence 854
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=3.3e-11 Score=75.59 Aligned_cols=58 Identities=28% Similarity=0.471 Sum_probs=53.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
+||++.| +.||.|..+.+..+..+..+|++||+|.+.++|.+|++.++|.+++||.|.
T Consensus 13 ~~l~~~f-~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 13 EDLRNFF-SRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHC-TTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHH-HhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 5899999 699999999999875577899999999999999999999999999999884
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.24 E-value=2.4e-11 Score=103.49 Aligned_cols=65 Identities=26% Similarity=0.429 Sum_probs=60.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
++|++.| ++||.|.+|+|..+.++.++|++||+|.+.++|.+|++.|||+.|+|++|.|.++...
T Consensus 300 ~~L~~~F-~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 300 EKLRELF-SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHHH-HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 6899999 6999999999998877889999999999999999999999999999999999998543
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.23 E-value=2.7e-11 Score=96.88 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=57.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||+|.+|+|+.+. ++.++|++||+|.+.++|.+|+..|||..+.|+.|.+.+..
T Consensus 18 ~~l~~~F-~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 18 EEIRSLF-TSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred HHHHHHH-HccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 5899999 799999999998753 46789999999999999999999999999999999999873
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=7.4e-11 Score=71.88 Aligned_cols=58 Identities=36% Similarity=0.599 Sum_probs=53.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+||++.| .+||.|..+.+..+. +.+.|++||+|.+.++|..|++.++|..+.|+.|.+
T Consensus 14 ~~l~~~~-~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 14 EDLKELF-SKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred HHHHHHH-HhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5888899 699999999998765 567899999999999999999999999999999986
No 21
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=9.8e-11 Score=70.99 Aligned_cols=60 Identities=32% Similarity=0.516 Sum_probs=54.0
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
.+||++.| .+||.|..+.+..+. .+.++|++||+|.+.++|..|++.|+|..++|+.|.+
T Consensus 10 ~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 10 EEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred HHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 36889999 699999999998764 3677899999999999999999999999999999986
No 22
>KOG0113|consensus
Probab=99.17 E-value=8.3e-11 Score=93.47 Aligned_cols=68 Identities=22% Similarity=0.439 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+|+.-+.+|+.+| .+||.|+.|+|+.+ .++.++|++||+|++..+...|.+..+|..++|+.|.|++-
T Consensus 110 nydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 110 NYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred cccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4667778999999 69999999999987 56899999999999999999999999999999999999987
No 23
>KOG4207|consensus
Probab=99.17 E-value=2.8e-11 Score=92.26 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
|...-+||+..| .|||.|-+|.|+++. +..++||+||.|....+|++|+.+|+|..++||.|.|.++
T Consensus 23 yRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 23 YRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 455667999999 599999999999874 4678999999999999999999999999999999999887
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.16 E-value=6.2e-11 Score=96.61 Aligned_cols=64 Identities=14% Similarity=0.283 Sum_probs=58.1
Q ss_pred HHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++||++.| ++||+|++|+|+.+ .++..+|++||+|.+.++|.+|+..|||..+.+++|++.+..
T Consensus 121 e~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 121 DRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred HHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 46899999 69999999999876 356789999999999999999999999999999999999873
No 25
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=3.9e-10 Score=68.96 Aligned_cols=62 Identities=34% Similarity=0.584 Sum_probs=55.7
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
.++|++.| +.||.|..+.+.......+.|++||+|.+.++|..|++.++|..++|+.+.+.+
T Consensus 13 ~~~i~~~~-~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 13 EEDLRELF-SKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHH-HhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 36889999 699999999999865556789999999999999999999999999999999864
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.14 E-value=2.7e-10 Score=94.32 Aligned_cols=64 Identities=20% Similarity=0.381 Sum_probs=58.1
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++||++.| ++||.|..|.++.+.. +..+|++||+|.+.++|.+|+..|||..+.|++|.|.|+.
T Consensus 200 e~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 200 EQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36889999 6999999999987643 5789999999999999999999999999999999999975
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.14 E-value=3.2e-10 Score=92.42 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=57.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCC--eeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G--r~I~v~~~~~~ 85 (130)
+||++.| ++||.|+.|.|+.+. +++.+|++||+|.+.++|.+|++.|||..+.| ++|+|.++...
T Consensus 208 e~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 208 DQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 5899999 799999999998764 57789999999999999999999999999977 78999988543
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2.3e-10 Score=89.85 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
++|.++++.-.+ +||++.| +.||+|.+|.|+.+. ...|++||+|.++++|..|+. |||..+.||.|.+.
T Consensus 7 VfVgNLs~~tTE-------~dLrefF-S~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt 75 (260)
T PLN03120 7 VKVSNVSLKATE-------RDIKEFF-SFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTIT 75 (260)
T ss_pred EEEeCCCCCCCH-------HHHHHHH-HhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEE
Confidence 356677765333 5899999 799999999998764 357999999999999999995 99999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
..+
T Consensus 76 ~a~ 78 (260)
T PLN03120 76 PAE 78 (260)
T ss_pred ecc
Confidence 874
No 29
>KOG0127|consensus
Probab=99.08 E-value=3.2e-10 Score=96.14 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=65.7
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec-cCcchhhh
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFREA 90 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~-~~~~~~~~ 90 (130)
..||+..| ++||.|.+|.||+..++...||+||+|....+|.+|++.+||..++||+|.|+|+ +.+.|...
T Consensus 131 ~~dLk~vF-s~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~t 202 (678)
T KOG0127|consen 131 KPDLKNVF-SNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDT 202 (678)
T ss_pred cHHHHHHH-hhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccccc
Confidence 35899999 8999999999999888888899999999999999999999999999999999999 77777664
No 30
>KOG0122|consensus
Probab=99.06 E-value=3.8e-10 Score=87.61 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=58.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||.++| .+||.|..|.|.++. ++.++||+||.|.+.++|.+||..|||+-|+.-.|.|+++.
T Consensus 204 ~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 204 DDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred hHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5788889 699999999998764 58899999999999999999999999999999999999973
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.05 E-value=4.5e-10 Score=94.64 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=60.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
++.+++++.+.+ ++|++.| ++||.|.+|+|+.+. +|++||+|.+.++|..|+..|||..+.|++|.|.+
T Consensus 279 ~v~nL~~~~vt~------~~L~~lF-~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 279 MVSGLHQEKVNC------DRLFNLF-CVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred EEeCCCCCCCCH------HHHHHHH-HhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 455665533333 5899999 799999999998852 69999999999999999999999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
+..
T Consensus 348 s~~ 350 (481)
T TIGR01649 348 SKQ 350 (481)
T ss_pred ccc
Confidence 743
No 32
>KOG0148|consensus
Probab=99.05 E-value=5.5e-10 Score=88.01 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=55.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.++|++.| +.||.|.+|+|.++ +|++||+|++.|+|.+||-.+||..+.|.+|+|.+-.+
T Consensus 178 e~~mr~~F-s~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 178 EDLMRQTF-SPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHhc-ccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 46889999 89999999999987 79999999999999999999999999999999988643
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.04 E-value=6.8e-10 Score=94.57 Aligned_cols=75 Identities=20% Similarity=0.451 Sum_probs=64.0
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+||.+++++-. ++||++.| ++||.|.+|+|+++.. ++++|++||+|.+.++|.+|+..||+..+.|+.|++
T Consensus 3 l~VgnLp~~vt-------e~~L~~~F-~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i 74 (562)
T TIGR01628 3 LYVGDLDPDVT-------EAKLYDLF-KPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRI 74 (562)
T ss_pred EEEeCCCCCCC-------HHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEe
Confidence 35666665433 35889999 7999999999998754 678999999999999999999999999999999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
.++.
T Consensus 75 ~~s~ 78 (562)
T TIGR01628 75 MWSQ 78 (562)
T ss_pred eccc
Confidence 8874
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.02 E-value=8.2e-10 Score=95.64 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=57.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|++++|.++. ++..+|++||+|.+.++|.+|+..|||..++|+.|+|.++-
T Consensus 219 edLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 219 TDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 5889999 699999999998764 35789999999999999999999999999999999998873
No 35
>KOG0144|consensus
Probab=99.00 E-value=5.7e-10 Score=92.40 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe-C--CeeEEEEeccCcch
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-G--GRPVYAELSPVTDF 87 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f-~--Gr~I~v~~~~~~~~ 87 (130)
.+.||++.| ++||.|++|.|.++..+.++||+||+|++.+-|..||+.|||.+- . ..+|.|.|++..+-
T Consensus 137 te~evr~iF-s~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 137 TENEVREIF-SRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cHHHHHHHH-HhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 456999999 899999999999998889999999999999999999999999764 3 47899999976543
No 36
>KOG0125|consensus
Probab=98.99 E-value=9.8e-10 Score=88.41 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=56.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.|++..| .+||+|.+|.|+.+.. -++||.||+|++.++|.+|-..|||..+.||.|.|.-+.
T Consensus 111 pDL~aMF-~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 111 PDLRAMF-EKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred ccHHHHH-HhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 5999999 5999999999998753 469999999999999999999999999999999998873
No 37
>KOG0114|consensus
Probab=98.98 E-value=1.3e-09 Score=75.22 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec-cCcchhhh
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFREA 90 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~-~~~~~~~~ 90 (130)
|+-..+++.+.| ++||.|..|+|-... ..+|-+||.|++..+|.+|+.+|+|..+++|.+.|-|+ +...|+.+
T Consensus 28 ~~ITseemydlF-Gkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~~~~~ 101 (124)
T KOG0114|consen 28 FKITSEEMYDLF-GKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDAFKLM 101 (124)
T ss_pred ccccHHHHHHHh-hcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHHHHHH
Confidence 344567899999 899999999996532 45899999999999999999999999999999999999 44555443
No 38
>KOG0130|consensus
Probab=98.98 E-value=6.8e-10 Score=79.90 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhccCCeeEEEEec-CCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~-~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
..++||.+.| +.||+|+++++-- ..++-.+|++.|+|++.++|++|+..|||..+-|..|.|.|+
T Consensus 84 atEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 84 ATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred hhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3456999999 7999999999954 456788999999999999999999999999999999999987
No 39
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.94 E-value=2.7e-09 Score=89.43 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=57.5
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++|++.| ++||.|..+.|+.+ .++..+|++||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 310 ~~l~~~f-~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 310 DQIKELL-ESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred HHHHHHH-HhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 6899999 69999999999875 356789999999999999999999999999999999999873
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.92 E-value=3.9e-09 Score=82.05 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=60.4
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+|.++|+.-.+ +||++.| +.||+|.+|+|+++. ...|++||+|.++++|..|+ .|||..+.+++|.+.-
T Consensus 9 ~V~NLS~~tTE-------~dLrefF-S~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 9 EVTNLSPKATE-------KDVYDFF-SHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred EEecCCCCCCH-------HHHHHHH-HhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 56677765444 4899999 799999999999873 45689999999999999998 6999999999999988
Q ss_pred cc
Q psy4990 82 SP 83 (130)
Q Consensus 82 ~~ 83 (130)
++
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 64
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.91 E-value=3.3e-09 Score=78.68 Aligned_cols=66 Identities=26% Similarity=0.428 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
-..++|++.| .+||.|..+.+..+ ..+..+|++||+|.+.++|..|+..++|..|.|+.|.+.+..
T Consensus 127 ~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 127 VTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 3446899999 69999999999877 367899999999999999999999999999999999999963
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.90 E-value=3.3e-09 Score=91.48 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=52.0
Q ss_pred HHHHHHhhhcc--CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKY--GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kf--G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++|+++| ++| |.|++|.+++ |++||+|++.++|.+|+..|||..|+|+.|.|+++.
T Consensus 248 e~L~~~F-~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 248 EIIEKSF-SEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred HHHHHHH-HhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 6899999 699 9999998764 599999999999999999999999999999999993
No 43
>PLN03213 repressor of silencing 3; Provisional
Probab=98.89 E-value=4.2e-09 Score=88.91 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=64.7
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecCh--HHHHHHHHHhCCcEeCCeeEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE--EDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~--~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
|||.+++..-.+ +||+..| +.||.|.+|.|++.. .+||+||+|.+. .++.+|+..|||..+.||.|+
T Consensus 13 IYVGNLSydVTE-------DDLravF-SeFGsVkdVEIpRET---GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 13 LHVGGLGESVGR-------DDLLKIF-SPMGTVDAVEFVRTK---GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred EEEeCCCCCCCH-------HHHHHHH-HhcCCeeEEEEeccc---CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 466677664444 4899999 799999999999543 399999999988 689999999999999999999
Q ss_pred EEeccCcchhhhhcc
Q psy4990 79 AELSPVTDFREACCR 93 (130)
Q Consensus 79 v~~~~~~~~~~~~~~ 93 (130)
|.-+. +.|....-.
T Consensus 82 VNKAK-P~YLeRLkr 95 (759)
T PLN03213 82 LEKAK-EHYLARLKR 95 (759)
T ss_pred Eeecc-HHHHHHHHH
Confidence 99883 344443333
No 44
>KOG0123|consensus
Probab=98.89 E-value=5.3e-09 Score=86.01 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=64.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
++-+++++-..+ ++.+.| +.||+|++|+|..+..+ ++|+ ||+|+++++|.+|+..+||..+.|+.|.|..
T Consensus 80 ~i~nl~~~~~~~-------~~~d~f-~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 80 FIKNLDESIDNK-------SLYDTF-SEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred eecCCCcccCcH-------HHHHHH-HhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 556666654443 677888 79999999999988766 8999 9999999999999999999999999999988
Q ss_pred ccCcchhh
Q psy4990 82 SPVTDFRE 89 (130)
Q Consensus 82 ~~~~~~~~ 89 (130)
......+.
T Consensus 150 ~~~~~er~ 157 (369)
T KOG0123|consen 150 FERKEERE 157 (369)
T ss_pred ccchhhhc
Confidence 75544433
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.88 E-value=3.5e-09 Score=91.32 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=55.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC-CeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~-Gr~I~v~~~ 82 (130)
++||++.| ++||.|.+|+|+.+.++.++|++||+|.+.++|.+|++.|||..+. |+.|.+...
T Consensus 72 Ed~L~~~F-~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 72 EDELVPLF-EKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHHHH-HhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 35889999 6999999999998877889999999999999999999999999985 787766543
No 46
>KOG0146|consensus
Probab=98.87 E-value=5.3e-09 Score=82.69 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe---CCeeEEEEeccCcc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTD 86 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f---~Gr~I~v~~~~~~~ 86 (130)
+|||+..| ..||.|++|.|.+..++.++||+||+|.+..+|..||+.|||..- ....|.|.|++.++
T Consensus 33 e~dvrrlf-~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 33 EDDVRRLF-QPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 102 (371)
T ss_pred HHHHHHHh-cccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchH
Confidence 57999999 699999999999998899999999999999999999999999654 34678999998765
No 47
>KOG0105|consensus
Probab=98.85 E-value=7.8e-09 Score=77.96 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=55.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.||.+.| .|||.|..|.+..+. .+..++||+|+++.+|..||..-||..|+|..|.|+|...
T Consensus 21 keieDlF-yKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 21 KEIEDLF-YKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccHHHHH-hhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 4788889 799999999987653 3568999999999999999999999999999999999854
No 48
>KOG0145|consensus
Probab=98.82 E-value=8.5e-09 Score=81.25 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=59.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.++++..| +..|+|++|+++++. .+++-|+.||.|.++.+|++|+..|||-.+..++|+|+|+.
T Consensus 55 qdE~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 55 QDELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred HHHHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45889999 799999999999874 57899999999999999999999999999999999999994
No 49
>KOG4206|consensus
Probab=98.81 E-value=1.7e-08 Score=77.48 Aligned_cols=78 Identities=18% Similarity=0.398 Sum_probs=65.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
|||++-+ ...-+++..-+...| ++||+|.+|...+.. +.+|-|||.|.+.+.|..|+++|+|.-|-|+++++.|
T Consensus 13 YInnLne---kI~~~elkrsL~~LF-sqfG~ildI~a~kt~--KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 13 YINNLNE---KIKKDELKRSLYLLF-SQFGKILDISAFKTP--KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred eehhccc---cccHHHHHHHHHHHH-HhhCCeEEEEecCCC--CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4555544 233456778888899 799999999998763 7899999999999999999999999999999999999
Q ss_pred ccCc
Q psy4990 82 SPVT 85 (130)
Q Consensus 82 ~~~~ 85 (130)
+..+
T Consensus 87 A~s~ 90 (221)
T KOG4206|consen 87 AKSD 90 (221)
T ss_pred ccCc
Confidence 9443
No 50
>KOG0145|consensus
Probab=98.80 E-value=1.5e-08 Score=79.95 Aligned_cols=75 Identities=13% Similarity=0.313 Sum_probs=63.9
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
||+-+++|+-.+ .-+++.| ++||.|.+|+|.++.+ .+.+|++||...+-++|..|+..|||..+++|.|.|
T Consensus 281 iFvYNLspd~de-------~~LWQlF-gpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 281 IFVYNLSPDADE-------SILWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred EEEEecCCCchH-------hHHHHHh-CcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 355667764332 2578899 8999999999998864 678999999999999999999999999999999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
+|-.
T Consensus 353 sFKt 356 (360)
T KOG0145|consen 353 SFKT 356 (360)
T ss_pred EEec
Confidence 9863
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.79 E-value=1.5e-08 Score=85.46 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=57.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHH--hCCcEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND--LNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~--lnGr~f~Gr~I~v 79 (130)
+|.+++..- .++||++.| ++||.|.+|.|++. +|++||+|.+.++|.+|++. +|+..+.|++|.+
T Consensus 6 ~V~nLp~~~-------te~~L~~~f-~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 6 HVRNLPQDV-------VEADLVEAL-IPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred EEcCCCCCC-------CHHHHHHHH-HhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 455565532 235899999 69999999999863 58999999999999999997 4789999999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
.|+.
T Consensus 73 ~~s~ 76 (481)
T TIGR01649 73 NYST 76 (481)
T ss_pred EecC
Confidence 9984
No 52
>KOG0121|consensus
Probab=98.78 E-value=2.1e-08 Score=71.56 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.++.|.+.| ++.|.|..|.+--+ ....+-|++||+|.+.++|..|++.+||..++.|+|.+++-
T Consensus 49 tEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 49 TEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457899999 89999999988433 34567899999999999999999999999999999999875
No 53
>KOG0108|consensus
Probab=98.76 E-value=1.4e-08 Score=85.07 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcc
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 86 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~ 86 (130)
|+-.+++|.+.| +..|.|.++++..+ .++..+|++|++|.+.++|..|++.|||..|.||.|+|.|....+
T Consensus 28 ~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 28 YEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred CcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 455668999999 79999999999755 458999999999999999999999999999999999999996544
No 54
>KOG0126|consensus
Probab=98.74 E-value=6.6e-10 Score=83.32 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
|+-.+.||...| ++||.|++|.++++. ++.++||+|+.|+++.+..-|+.+|||-.+.||.|+|+.+
T Consensus 45 ~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 45 YELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccccCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 445567999999 899999999999874 5899999999999999999999999999999999999876
No 55
>KOG0111|consensus
Probab=98.70 E-value=1.4e-08 Score=78.32 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=56.2
Q ss_pred HHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 21 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 21 Di~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
=+...| -+||.|..|.+|-+. +++.+|++||+|...++|..||.+||+..+-||+|+|.|+..
T Consensus 26 vLhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 26 VLHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred HHHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 345677 699999999999764 467899999999999999999999999999999999999943
No 56
>KOG0144|consensus
Probab=98.66 E-value=5.8e-08 Score=80.65 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=58.3
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEe---CCeeEEEEeccCcc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTD 86 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f---~Gr~I~v~~~~~~~ 86 (130)
+.||++.|| +||.|.+|.|+++. ++.++||+||+|.+.++|.+|+.+||...- ...+|.|.|++.++
T Consensus 48 E~dlr~lFe-~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 48 EKDLRELFE-KYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER 118 (510)
T ss_pred HHHHHHHHH-HhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh
Confidence 579999995 99999999999874 467899999999999999999999998764 44789999997654
No 57
>KOG0147|consensus
Probab=98.66 E-value=4.4e-08 Score=83.03 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
|++-..++++..| ..||+|..|.+..+. ++..+||.||+|.+.++|.+|...|||-.+.||.|+|....
T Consensus 287 HfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 287 HFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred ccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 4555667899999 599999999999886 68999999999999999999999999999999999998873
No 58
>KOG0124|consensus
Probab=98.63 E-value=4e-08 Score=80.56 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=55.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
++-|+..| ..||+|++|.+..+ .+++.+||+||+|+-++.|+-|+..|||..++||.|+|..
T Consensus 127 EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 127 EDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 45788999 69999999999755 4688999999999999999999999999999999998864
No 59
>KOG0117|consensus
Probab=98.63 E-value=1.1e-07 Score=79.31 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.++-|+.+| ++||+|+.|+.+++ ++||.|.+.++|.+|++.|||..++|..|.|.++
T Consensus 272 TeE~lk~~F-~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 272 TEETLKKLF-NEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hHHHHHHHH-HhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 445788889 79999999998875 8999999999999999999999999999999999
No 60
>KOG0117|consensus
Probab=98.63 E-value=8.2e-08 Score=79.98 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEe-CCeeEEEEec
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GGRPVYAELS 82 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f-~Gr~I~v~~~ 82 (130)
-+++||.-.|+ +-|+|-++++..+ -++..+|++||.|.+.++|++||+.||+..| .|+.|.|+.+
T Consensus 95 ~~EdeLvplfE-kiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 95 VFEDELVPLFE-KIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred ccchhhHHHHH-hccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 45689999994 9999999999876 5688999999999999999999999999988 7899988765
No 61
>KOG0149|consensus
Probab=98.61 E-value=5.5e-08 Score=75.27 Aligned_cols=68 Identities=26% Similarity=0.378 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
|+.-.+++++-|| +||.|++.+|+.+ .+++++|+.||+|.+.++|.+|.+.-|= .++||...|.++..
T Consensus 22 w~T~~~~l~~yFe-qfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 22 WETHKETLRRYFE-QFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLASL 90 (247)
T ss_pred cccchHHHHHHHH-HhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchhhh
Confidence 5566789999995 9999999988755 4689999999999999999999986654 78999999988754
No 62
>KOG4208|consensus
Probab=98.59 E-value=1.4e-07 Score=71.73 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=57.2
Q ss_pred HHHHHHHhhhcc-CCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 19 FEDVFVECEDKY-GEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 19 ~eDi~~e~~~kf-G~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
+..+..-| .+| |.|..+++.++ .+|.++||+||+|++++.|.-|...||+.-|.|+.|.|.|.+.+
T Consensus 63 e~~~~~~~-~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 63 ETEILNYF-RQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HHHHhhhh-hhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 35566667 577 78888888776 46899999999999999999999999999999999999999766
No 63
>KOG0131|consensus
Probab=98.53 E-value=1.7e-07 Score=70.28 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=56.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+-|++.| -+-|+|.+++||++. .+..+|++|++|.++++|.-|++.||+-.+-||+|++.-++
T Consensus 24 ~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 24 ELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4567788 699999999999874 35679999999999999999999999999999999998886
No 64
>KOG0131|consensus
Probab=98.52 E-value=2e-07 Score=69.88 Aligned_cols=74 Identities=15% Similarity=0.355 Sum_probs=60.9
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEE-EEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEM-NVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v-~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
+++.++++ ++++ .-+...| ++||.|..- .|.++ .++.++|++||.|++.+.+.+|+..|||.+...|+|+
T Consensus 99 lfvgNLd~-~vDe------~~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 99 LFVGNLDP-EVDE------KLLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccCc-chhH------HHHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 46778888 6666 2467778 899998663 44443 3478899999999999999999999999999999999
Q ss_pred EEec
Q psy4990 79 AELS 82 (130)
Q Consensus 79 v~~~ 82 (130)
++|+
T Consensus 171 v~ya 174 (203)
T KOG0131|consen 171 VSYA 174 (203)
T ss_pred EEEE
Confidence 9998
No 65
>KOG0109|consensus
Probab=98.51 E-value=3.7e-07 Score=72.80 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=51.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.+|+..|| +||+|++|.|+++ ++||..++...|..||++|||..++|..|.|+-+
T Consensus 17 ~elr~lFe-~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 17 QELRSLFE-QYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred HHHHHHHH-hhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 57899995 9999999999998 6899999999999999999999999999999876
No 66
>KOG0110|consensus
Probab=98.48 E-value=3.9e-07 Score=79.29 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCCCC----CceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGD----HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~----~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.|++..+++...| .+.|.|.++.|...... .+.|++||+|.++++|+.|++.|+|+.++|+.|.+.+++
T Consensus 524 nf~Tt~e~l~~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 524 NFDTTLEDLEDLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CcccchhHHHHHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 5677888999999 69999999999865432 245999999999999999999999999999999999997
No 67
>KOG0109|consensus
Probab=98.47 E-value=2.4e-07 Score=73.87 Aligned_cols=55 Identities=29% Similarity=0.585 Sum_probs=51.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
++++..| .+||+|.+|.|.++ ++||.|.-.++|..|++.|||+.|+|+.++|.+.
T Consensus 93 ~ElRa~f-e~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 93 QELRAKF-EKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred HHHhhhh-cccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4789999 59999999999885 8999999999999999999999999999999987
No 68
>KOG0123|consensus
Probab=98.44 E-value=6.3e-07 Score=73.81 Aligned_cols=65 Identities=23% Similarity=0.422 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
.+.++++.| +++|+|.+++|+++. . +.|++||.|.++++|.+|+..||...+.|++|+.-+...+
T Consensus 11 ~e~~l~~~f-~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 11 TEAMLFDKF-SPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred ChHHHHHHh-cccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 346889999 799999999999998 6 9999999999999999999999999999999999888443
No 69
>KOG0127|consensus
Probab=98.39 E-value=7.3e-07 Score=76.07 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHh-----CC-cEeCCeeEEEEec
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDL-----NN-RWFGGRPVYAELS 82 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~l-----nG-r~f~Gr~I~v~~~ 82 (130)
|+..+++|.+.| ++||.|.-+.|+.. .++++.|.+||.|.++.+|..||.+. .| -.++||+|.|..+
T Consensus 302 fD~tEEel~~~f-skFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 302 FDTTEEELKEHF-SKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred ccccHHHHHHHH-HhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 667778999999 79999999998764 46899999999999999999999987 34 6789999999987
No 70
>KOG0415|consensus
Probab=98.26 E-value=1.2e-06 Score=71.69 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=58.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec-cCcc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTD 86 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~-~~~~ 86 (130)
+|+.-.| +.||+|.+|.|+++. ++.+--++||+|++.++.++|.-.|++-.++.|.|+|.|+ ++.+
T Consensus 254 eDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 254 EDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred cchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 4788889 899999999999863 4566779999999999999999999999999999999999 4444
No 71
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.26 E-value=2.1e-06 Score=69.91 Aligned_cols=58 Identities=24% Similarity=0.478 Sum_probs=48.8
Q ss_pred HHhhhccCCeeEEEEecCCC-----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 24 VECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 24 ~e~~~kfG~I~~v~i~~~~~-----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+-| ++||+|.+|.|-+... ....| |||.|.+.++|..||...+|...+||.|+|.|-.
T Consensus 139 eyF-GQyGkI~KIvvNkkt~s~nst~~h~g-vYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 139 EYF-GQYGKIKKIVVNKKTSSLNSTASHAG-VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hhh-hhccceeEEEecccccccccccccce-EEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 346 8999999999987531 11234 8999999999999999999999999999999864
No 72
>KOG0110|consensus
Probab=98.25 E-value=1.3e-06 Score=76.18 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
-|+..+.+|+..| +.||.|.+|.||.. ..+.++|++||.|-++.+|..|+++|.++.+-||.|..+|+..+
T Consensus 622 pFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 622 PFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred chHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 3677788999999 79999999999987 33456899999999999999999999999999999999999544
No 73
>KOG4661|consensus
Probab=98.15 E-value=4.1e-06 Score=72.20 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=56.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.||+..| +|||+|+..+|+.+.. .-.+.|.||++.+.++|.+||.+||-+.+.||.|.|+-+
T Consensus 420 tDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 420 TDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred hHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 5899999 8999999999998753 334679999999999999999999999999999999877
No 74
>KOG4212|consensus
Probab=98.07 E-value=1.1e-05 Score=67.58 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=56.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+|+++.+..|-|.|.=|.+..+.+++++||+.|+|+++|.+++|+..||...+.||+|.|.-.+
T Consensus 59 qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 59 QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 3555555446699999999999889999999999999999999999999999999999997663
No 75
>KOG2314|consensus
Probab=98.04 E-value=1.2e-05 Score=69.10 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC-eeEEEEec-cCcchhh
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-RPVYAELS-PVTDFRE 89 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G-r~I~v~~~-~~~~~~~ 89 (130)
.+.+..-+...| +++|+|.++.+|.+..+..+|++|++|++..+|..|++.|||..++- .+..|..+ +.++|..
T Consensus 74 l~klk~vl~kvf-sk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~d~eky~s 149 (698)
T KOG2314|consen 74 LEKLKKVLTKVF-SKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFKDFEKYES 149 (698)
T ss_pred HHHHHHHHHHHH-HhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehhhhHHHhcC
Confidence 455667788889 79999999999987777799999999999999999999999999964 55666554 4444433
No 76
>KOG0153|consensus
Probab=97.99 E-value=2.1e-05 Score=63.99 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHH-HhCCcEeCCeeEEEEeccC
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN-DLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~-~lnGr~f~Gr~I~v~~~~~ 84 (130)
-++.||++.| .+||.|..|.+... +|++||+|.+.++|+.|.. .+|-..++|+.|++.+.+.
T Consensus 240 v~e~dIrdhF-yqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 240 VLEQDIRDHF-YQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred hhHHHHHHHH-hhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4567999999 69999999999875 5799999999999998877 5666667999999996644
No 77
>KOG0146|consensus
Probab=97.92 E-value=8.1e-06 Score=64.86 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.+|.+.| -.||.|.+.+|..+ .+..++.+.||.|.++.+|+.||.+|||-.++.+.|+|.+-
T Consensus 300 aEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 300 AELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred HHHHHHh-ccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 3788899 69999999999754 45678999999999999999999999999999999999765
No 78
>KOG4212|consensus
Probab=97.85 E-value=2.1e-05 Score=66.06 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=55.6
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
|||.++-=+=+|+ -+++.| ..||.|+-..|..+ ++.+| .|+|.++++|+.|+..|||..++||.|.|.
T Consensus 539 IiirNlP~dfTWq-------mlrDKf-re~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 539 IIIRNLPFDFTWQ-------MLRDKF-REIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred EEEecCCccccHH-------HHHHHH-Hhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 4555554433333 677788 68999999988655 45566 899999999999999999999999999998
Q ss_pred ec
Q psy4990 81 LS 82 (130)
Q Consensus 81 ~~ 82 (130)
|+
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 74
No 79
>KOG0132|consensus
Probab=97.79 E-value=5.5e-05 Score=66.93 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.+.||...| ..||.|.+|.+.-+ +|++||+.....+|.+|+.+|+...+.++.|++.|.
T Consensus 434 ~e~dL~~~f-eefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 434 TEQDLANLF-EEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred hHHHHHHHH-HhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 346999999 59999999998875 799999999999999999999999999999999887
No 80
>KOG4209|consensus
Probab=97.74 E-value=2.6e-05 Score=60.58 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=55.1
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.+.+..+| ..||.|..+.|+.+. .++++|++||+|.+.+.+..|++ |||..+.|+.+.+.+.
T Consensus 115 ~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 115 LTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 34588889 599999999998654 46799999999999999999999 9999999999999887
No 81
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.69 E-value=0.00019 Score=52.19 Aligned_cols=60 Identities=22% Similarity=0.459 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+-+.+..++.+.| ..||.|.-|++... ..+|.|.+-++|.+|+. |+|..++|+.|++..-
T Consensus 45 Fdd~l~~~ll~~~-~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 45 FDDNLMDELLQKF-AQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp --HHHHHHHHHHH-HCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred CCHHHHHHHHHHH-HhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 3457889999999 79999988877764 58999999999999987 9999999999999875
No 82
>KOG4660|consensus
Probab=97.68 E-value=1.9e-05 Score=67.40 Aligned_cols=54 Identities=30% Similarity=0.501 Sum_probs=48.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
++|++.| +.||.|..|+--. +..|-+||+|-+..+|+.|+++||++.+.|+.|+
T Consensus 90 ~~L~~~f-~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 90 DTLLRIF-GAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHH-Hhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5788889 7999999965544 3578999999999999999999999999999998
No 83
>KOG0533|consensus
Probab=97.65 E-value=0.00016 Score=56.70 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
-+-+||++.| ..||.++.+-|.-+..+.+.|.+=|.|...++|..|++.+||--++|+++........
T Consensus 95 V~~~Dl~eLF-~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 95 VIDADLKELF-AEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cchHHHHHHH-HHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3446999999 6999999999988878889999999999999999999999999999999999888443
No 84
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.49 E-value=0.00042 Score=47.40 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhccCCeeEEEE-ecC-------CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE-EEEec
Q psy4990 18 FFEDVFVECEDKYGEIEEMNV-CDN-------LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV-YAELS 82 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i-~~~-------~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I-~v~~~ 82 (130)
....|.++| ++||.|.+..- .+. +......++.|+|.++.+|.+|++ -||+.|+|..+ -|.+.
T Consensus 18 ~~~~Vl~~F-~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 18 ASNQVLRHF-SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp GHHHHHHHH-HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred HHHHHHHHH-HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 446789999 79999988851 111 011234699999999999999997 89999998665 45554
No 85
>KOG1190|consensus
Probab=97.44 E-value=0.00056 Score=57.05 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=59.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhhhccc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQ 94 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~~~~~ 94 (130)
+-+...| +-||.|.+|+|..+. +-.+-|+|.+...|+-|+.+|+|..+-|+.|++.+.........+.++
T Consensus 313 d~LftlF-gvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 313 DVLFTLF-GVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hHHHHHH-hhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 4677888 899999999999864 367999999999999999999999999999999999665554444333
No 86
>KOG4454|consensus
Probab=97.30 E-value=0.00048 Score=53.44 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 13 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 13 ~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
..|.+.-+++..|+.-+-|+|.+|.|+...++..+ ++||.|.++-+..-|+..|||-.+.++.+.+.+..
T Consensus 16 n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 16 NMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34445555555444368899999999988776666 99999999999999999999999999999998874
No 87
>KOG0226|consensus
Probab=97.29 E-value=0.0002 Score=56.46 Aligned_cols=53 Identities=21% Similarity=0.467 Sum_probs=45.3
Q ss_pred hccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 28 DKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 28 ~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
.||=.-...+|+++. +++++|+.||.|.+..++..|++.|||++.+.|+|+..
T Consensus 212 ~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 212 KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 566666666777653 57899999999999999999999999999999999873
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.23 E-value=0.0014 Score=43.73 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcc-CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 16 DNFFEDVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 16 ~~~~eDi~~e~~~kf-G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
..+..-+++.++ .+ |+|.+|. .|.+.|.|.+++.|.+|.+.|+|...-|+.|.|.|.+..
T Consensus 17 ~~I~~RL~qLsd-NCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 17 SSIKNRLRQLSD-NCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp HHHHHHHHHHHH-TTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred HHHHHHHHHHhh-ccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 456667788874 55 6887772 367999999999999999999999999999999998653
No 89
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.18 E-value=0.0011 Score=40.07 Aligned_cols=40 Identities=33% Similarity=0.596 Sum_probs=33.3
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHH
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai 64 (130)
.++|+..| ..||+|.++.++.. .-.+||+|.+..+|++|+
T Consensus 14 ~~~vl~~F-~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHF-ASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHH-HhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 45778889 69999999999843 237999999999999984
No 90
>KOG0106|consensus
Probab=97.17 E-value=0.00032 Score=54.06 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=49.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
..||...| .+||.|.++.+.. |++||+|.+..+|..|+..|||..|.|-.+.+++.-
T Consensus 15 ~~d~E~~f-~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 15 ERDVERFF-KGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred hhHHHHHH-hhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 46888999 6999998886654 688999999999999999999999999888777763
No 91
>KOG4205|consensus
Probab=97.02 E-value=0.00043 Score=56.04 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
|+...+.+++.| ++||.|.++.|.++. +++++|+.||+|++++....++. ..-+.++||.|.+.-+
T Consensus 16 w~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 16 WETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred ccccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 344556888899 799999999999764 47899999999999887776654 4455678888766544
No 92
>KOG1548|consensus
Probab=96.81 E-value=0.0038 Score=51.11 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=55.4
Q ss_pred HHHHHHhhhccCCeeE--------EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEE--------MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~--------v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+++.+++ +++|-|.. |++.++..++.+|-+-+.|-..++..-|++.|++..|.|+.|+|+-+.
T Consensus 149 dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 149 DEFAEVM-SKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHHHHH-HhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 4567778 79998865 778887779999999999999999999999999999999999998763
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.79 E-value=0.0034 Score=43.10 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=37.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc-----EeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR-----WFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr-----~f~Gr~I~v~~~ 82 (130)
.+||++.| ++||.|.=|.+.+. .-.+||.|.++++|++|+..+.-. .+.+..+++...
T Consensus 15 re~iK~~f-~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 15 REDIKEAF-SQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp HHHHHHHT--SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred HHHHHHHH-HhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 47999999 79999988777664 236899999999999999977644 678888888877
No 94
>KOG0116|consensus
Probab=96.77 E-value=0.0037 Score=52.56 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=49.7
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
..+|+++| .+||.|++..|.... .+....++||+|.+.+++..|+.+- =-.+++|.|.++-=
T Consensus 302 ~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 302 PAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred HHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 34688999 799999999997543 2333389999999999999999855 77789999998753
No 95
>KOG0106|consensus
Probab=96.50 E-value=0.0016 Score=50.17 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=46.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||.+.| .++|.+....+ . .+.+||+|++.++|.+|+..|+|..+.++.|.+.+.
T Consensus 114 qdl~d~~-~~~g~~~~~~~-~------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 114 QDLKDHF-RPAGEVTYVDA-R------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred HHHhhhh-cccCCCchhhh-h------ccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 5778888 79999943333 2 578999999999999999999999999999999544
No 96
>KOG0151|consensus
Probab=96.48 E-value=0.0048 Score=54.68 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=53.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCC----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+.+...| +.||+|-.|+|.-+.+ ....-|+||-|-+..+|.+|++.|+|..+.++.++.-|.
T Consensus 189 ~~ll~tf-GrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 189 NFLLRTF-GRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred HHHHHHh-cccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 4678889 8999999999986643 345678999999999999999999999999999887766
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.42 E-value=0.029 Score=38.14 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=41.9
Q ss_pred CCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeC----CeeEEEEec
Q psy4990 31 GEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFG----GRPVYAELS 82 (130)
Q Consensus 31 G~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~----Gr~I~v~~~ 82 (130)
|...=+.+|.+. +....|+|||.|.+++.|.+-.+.++|+... .++..+.|+
T Consensus 28 g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 28 GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYA 84 (97)
T ss_pred CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehh
Confidence 888888888664 3567899999999999999999999998874 344556555
No 98
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.15 E-value=0.022 Score=42.86 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC--CcEeCCeeEEEEeccCc
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPVT 85 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln--Gr~f~Gr~I~v~~~~~~ 85 (130)
+..+.++..| ..|+.+......+. -+.+-|.|.+.++|..|...|+ +..|.|..+++.|....
T Consensus 7 ~~~~~l~~l~-~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELF-STYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHH-HTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHH-HhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4567788888 69999999988774 4689999999999999999999 99999999999998443
No 99
>KOG1365|consensus
Probab=96.09 E-value=0.0059 Score=50.86 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhccCCe-eE--EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhh
Q psy4990 15 YDNFFEDVFVECEDKYGEI-EE--MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I-~~--v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~ 90 (130)
|+...+||...+ +.|..- .- |++.-+..+++.|-+||+|.+.++|..|...-|.....+|.|.+--++.+...+.
T Consensus 290 y~AtvEdIL~Fl-gdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~v 367 (508)
T KOG1365|consen 290 YEATVEDILDFL-GDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEV 367 (508)
T ss_pred hhhhHHHHHHHH-HHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHH
Confidence 677788888888 577643 22 7888887789999999999999999999999999988999999877777666543
No 100
>KOG4205|consensus
Probab=96.08 E-value=0.0059 Score=49.48 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred HHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
++|+++.| .+||.|..+.++.+ ....++|+.||.|.+.++..++.. .+-+.|+|+.|.|.-+
T Consensus 111 e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 111 EEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred hHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 46889999 59999999988755 346789999999999887777664 8889999999999877
No 101
>KOG2068|consensus
Probab=95.89 E-value=0.0029 Score=51.39 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=47.6
Q ss_pred HHhhhccCCeeEEEEecCCC----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 24 VECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 24 ~e~~~kfG~I~~v~i~~~~~----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+-| ++||+|.+|.+....+ ...---+||.|...++|..||...+|-.++|+.+++.+-
T Consensus 99 eyf-gqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 99 EYF-GQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred ccc-cccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 346 7899999999987542 111123999999999999999999999999999998877
No 102
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.89 E-value=0.048 Score=39.92 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=44.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
..|...+ +.||+|.+|...-.. -+-|.|.+..+|-+|++++.. .--|..+.|++-
T Consensus 105 ~sV~~~L-s~fGpI~SVT~cGrq------savVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRL-SVFGPIQSVTLCGRQ------SAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHH-HhcCCcceeeecCCc------eEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3667777 799999999988653 489999999999999999987 445666777653
No 103
>KOG1456|consensus
Probab=95.84 E-value=0.027 Score=46.93 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=51.0
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe-CC-eeEEEEeccCc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GG-RPVYAELSPVT 85 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f-~G-r~I~v~~~~~~ 85 (130)
.+=|...| ...|+|..|.|.+.. -..+-|+|++.+.|++|..+|||-.+ .| -+|+++|+..+
T Consensus 136 vDVly~Ic-np~GkVlRIvIfkkn----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 136 VDVLYTIC-NPQGKVLRIVIFKKN----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred hhhhhhhc-CCCCceEEEEEEecc----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 34567889 799999999999863 35699999999999999999999765 44 57899998444
No 104
>KOG4285|consensus
Probab=95.66 E-value=0.029 Score=45.45 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=43.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
.-|..+| .+||.|++.+-..+. -+.+|+|.+.-+|.+|+. -||+.|+|-.+
T Consensus 211 s~vL~~F-~~cG~Vvkhv~~~ng-----NwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 211 SIVLNLF-SRCGEVVKHVTPSNG-----NWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred hHHHHHH-HhhCeeeeeecCCCC-----ceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 3578999 699999998877542 489999999999999997 78999998765
No 105
>KOG0120|consensus
Probab=95.54 E-value=0.012 Score=50.42 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=55.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.+.+++.+ ..||.++...++.+.. +.++|++|.+|.++.-+..|+..|||....++.+.|..+
T Consensus 303 ~~q~~Ell-~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 303 EDQVKELL-DSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred HHHHHHHH-HhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34667777 5889999999987654 688999999999999999999999999999999999877
No 106
>KOG4211|consensus
Probab=95.42 E-value=0.087 Score=45.00 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
-|...++||++.| +.. .|.++.+++.. ++..|-+||+|++.+++++|++ .|-.....|-|.|--+
T Consensus 19 Pwsat~~ei~~Ff-~~~-~I~~~~~~r~~-Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 19 PWSATEKEILDFF-SNC-GIENLEIPRRN-GRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CccccHHHHHHHH-hcC-ceeEEEEeccC-CCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3667789999999 343 58887777753 6788999999999999999998 6777778888887555
No 107
>KOG1190|consensus
Probab=95.32 E-value=0.085 Score=44.38 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCcee-EEEEEecChHHHHHHHHHhCCcEe-CC-eeEEEEeccCc----chhhhhc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVG-NVYIKFRREEDAEKAVNDLNNRWF-GG-RPVYAELSPVT----DFREACC 92 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G-~~fV~F~~~~~A~~Ai~~lnGr~f-~G-r~I~v~~~~~~----~~~~~~~ 92 (130)
|=+.+.| ++||.|.+|.-+... .| .+-|+|.+.+.|..|..+|+|+-+ +| -+|+.+|.... +|.+-+-
T Consensus 165 DVLHqvF-S~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkS 239 (492)
T KOG1190|consen 165 DVLHQVF-SKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKS 239 (492)
T ss_pred HHHHHHH-hhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecccccc
Confidence 4567889 899999999888753 33 388999999999999999999986 44 45788887443 4555555
Q ss_pred cccccccCCCC
Q psy4990 93 RQYEMVLETKN 103 (130)
Q Consensus 93 ~~~~~~~~~~g 103 (130)
+.+-....|-|
T Consensus 240 RDyTnp~LP~g 250 (492)
T KOG1190|consen 240 RDYTNPDLPVG 250 (492)
T ss_pred ccccCCCCCCC
Confidence 55555555544
No 108
>KOG1995|consensus
Probab=95.23 E-value=0.018 Score=47.24 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHhhhccCCeeE--------EEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEE--------MNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~--------v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.++|.+-| .++|.|.. |+|.++ .++.++|-+-|.|+++..|+.|+..++++.|.|.+|+|.++.
T Consensus 80 ~~~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 80 ENDNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAE 152 (351)
T ss_pred HHHHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhh
Confidence 45666667 57777654 444333 346789999999999999999999999999999999998884
No 109
>KOG1457|consensus
Probab=94.85 E-value=0.15 Score=39.91 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHHHhhhccCCeeEEEEec--CCCCCceeEEEEEecChHHHHHHHHHhCCcEeC---CeeEEEEec
Q psy4990 21 DVFVECEDKYGEIEEMNVCD--NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG---GRPVYAELS 82 (130)
Q Consensus 21 Di~~e~~~kfG~I~~v~i~~--~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~---Gr~I~v~~~ 82 (130)
+|+..| ..|---+...+-- ......+-++|+.|.+..+|..|+++|||-.|+ +..|+.+++
T Consensus 50 EiynLF-R~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 50 EIYNLF-RRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred HHHHHh-ccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 556666 4554444444432 111223458999999999999999999999995 678999988
No 110
>KOG4210|consensus
Probab=94.53 E-value=0.014 Score=46.67 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.-.+||+..+ ..+|.|..+.++.. .++...|++||.|.....+..|+.. ..+...++++.+.+-+
T Consensus 197 ~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 197 LTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 3445777888 79999999999865 4567899999999999999999988 8999999999998764
No 111
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.27 E-value=0.26 Score=31.19 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=39.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
.+|++.-+ .+|+-. .|... ..| .||.|.+..+|.+|.+..||+.+-+..+.+
T Consensus 14 v~d~K~~L-r~y~~~-~I~~d------~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRL-RKYRWD-RIRDD------RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHH-hcCCcc-eEEec------CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788888 688743 23222 246 699999999999999999999998877654
No 112
>KOG1456|consensus
Probab=93.89 E-value=0.24 Score=41.45 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=52.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+-|...| ..||.|.+|+..+. ..|-+-|+..+..+.++|+..||+-.+-|..|.+.++..
T Consensus 303 drlFNl~-ClYGNV~rvkFmkT----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 303 DRLFNLF-CLYGNVERVKFMKT----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hhhhhhh-hhcCceeeEEEeec----ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4567778 69999999999874 258899999999999999999999999999999988744
No 113
>KOG4211|consensus
Probab=93.66 E-value=0.11 Score=44.40 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhccCCeeE-EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhh
Q psy4990 18 FFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 89 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~-v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~ 89 (130)
.++||.+.| +-.=.|.. |.++....+++.|-+||+|++.+.|++|+. =|...++.|-|.+--++...++.
T Consensus 116 te~dI~~FF-aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 116 TEEDIVEFF-AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred cHHHHHHHh-cCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHh
Confidence 357888888 44444444 445555556788999999999999999987 45667788888886665544433
No 114
>KOG1855|consensus
Probab=93.59 E-value=0.062 Score=45.31 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCC---C---CC--------ceeEEEEEecChHHHHHHHHHhC
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNL---G---DH--------LVGNVYIKFRREEDAEKAVNDLN 68 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~---~---~~--------~~G~~fV~F~~~~~A~~Ai~~ln 68 (130)
...+.|...| +.+|.|+.|+|+.+. . +. .+-+++|+|.+.+.|.+|...||
T Consensus 243 h~~enl~kiF-g~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 243 HSYENLSKIF-GTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred hHHHHHHHHh-hcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4558899999 899999999999872 1 11 24579999999999999999885
No 115
>KOG4307|consensus
Probab=93.44 E-value=0.14 Score=45.67 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhccCCeeE-EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 16 DNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 16 ~~~~eDi~~e~~~kfG~I~~-v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+-..+||.+.| .-|-.+-. |.+-.+.++...|-+-|-|++.++|..|...|+++.+..|+|.+.+
T Consensus 878 ~v~l~dI~~FF-~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 878 DVTLEDIVEFF-NDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred cccHHHHHHHh-cccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34457888888 78876544 4444555678899999999999999999999999999999998765
No 116
>KOG1457|consensus
Probab=91.46 E-value=0.31 Score=38.26 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=42.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
||-|++++-.+ ++++..| +.|---.-++|-.. .+.-.+|+.|++.+.|..|+..|.|-.+
T Consensus 214 fianl~~~~~e-------d~l~~~~-~~~~gf~~l~~~~~---~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 214 FIANLGPNCTE-------DELKQLL-SRYPGFHILKIRAR---GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhccCCCCCH-------HHHHHHH-HhCCCceEEEEecC---CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 45566665443 4778888 79976555555433 1345799999999999999999988554
No 117
>KOG0128|consensus
Probab=91.45 E-value=0.1 Score=47.13 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
...+.++..| +++|++.++.++....+.++|.+||.|.++.+|.+++-..++..+.-+.+.+...+
T Consensus 748 gt~e~~k~l~-~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 748 GTKEELKSLA-SKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred CchHHHHhhc-cccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 3456788899 89999999998887778999999999999999999999999999988888888763
No 118
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.38 E-value=0.76 Score=31.81 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=35.8
Q ss_pred CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC
Q psy4990 31 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 74 (130)
Q Consensus 31 G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G 74 (130)
..|..++|.++.. ..+=-|-++|.+.++|..-.+.+||+.|+.
T Consensus 39 ~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 39 EDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4688899988753 234468899999999999999999999976
No 119
>KOG4676|consensus
Probab=90.69 E-value=0.54 Score=39.50 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=52.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
+-|++|.-.. +.++.+| +-.|+|.++.+..+.. ....-.+||.|.+...+..|. +|....|=++.|.
T Consensus 12 vanispsat~-------dqm~tlF-g~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdrali 82 (479)
T KOG4676|consen 12 VANISPSATK-------DQMQTLF-GNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALI 82 (479)
T ss_pred ecccCchhhH-------HHHHHHH-hhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEE
Confidence 4456664443 4678889 7899999999976432 234557999999999888665 5888888888887
Q ss_pred EEec
Q psy4990 79 AELS 82 (130)
Q Consensus 79 v~~~ 82 (130)
|--|
T Consensus 83 v~p~ 86 (479)
T KOG4676|consen 83 VRPY 86 (479)
T ss_pred EEec
Confidence 7766
No 120
>KOG2416|consensus
Probab=90.48 E-value=0.25 Score=43.33 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe---CCeeEEEEeccCcchhhhhccc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTDFREACCRQ 94 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f---~Gr~I~v~~~~~~~~~~~~~~~ 94 (130)
-.|++++....|.|.+.||.+- +--+||.|.+.++|..-..+|||-.. +++.|.+.|...+.....+.+.
T Consensus 459 gQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld~hr~~l 531 (718)
T KOG2416|consen 459 GQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELDKHRNGL 531 (718)
T ss_pred HHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHHHHhccc
Confidence 4567777225678888876543 45699999999999999999999765 7788999999777666544443
No 121
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.85 E-value=1.4 Score=29.33 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=35.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
.||.+.| +.||.|.=-+|... -+||...+.+.|..|++.++-
T Consensus 23 ~DI~qlF-spfG~I~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 23 SDIYQLF-SPFGQIYVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHC-CCCCCEEEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred hhHHHHh-ccCCcEEEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 5999999 89999966666554 499999999999999998863
No 122
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.73 E-value=1.7 Score=27.50 Aligned_cols=42 Identities=29% Similarity=0.463 Sum_probs=26.3
Q ss_pred CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
.|-+|.|..+ +.||+-.. +.|..++..|++..+.|+.|.++.
T Consensus 32 ~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 32 DIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred hEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 5777888775 57888776 468999999999999999999875
No 123
>KOG4206|consensus
Probab=87.46 E-value=2.5 Score=32.81 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC-CeeEEEEec
Q psy4990 24 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 82 (130)
Q Consensus 24 ~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~-Gr~I~v~~~ 82 (130)
..| .+|.--++|+..... .|.+||+|.+...|..|...|.|-.+- ..++.+.|+
T Consensus 165 ~lf-~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 165 DLF-EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHH-hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 344 467777777776642 589999999999999999999998776 667777665
No 124
>KOG2135|consensus
Probab=86.65 E-value=0.51 Score=40.42 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=49.7
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
..|+...| .+||+|..|.|..+. --+-|+|.+..+|-.|.. .+|-.|++|.|++.+-..
T Consensus 387 ~a~ln~hf-A~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 387 IADLNPHF-AQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred Hhhhhhhh-hhcCccccccccCch-----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 46888889 799999999997652 237899999999988875 899999999999988744
No 125
>KOG3152|consensus
Probab=85.94 E-value=0.35 Score=38.36 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHhhhccCCeeEEEEecCCCC---------Ccee----EEEEEecChHHHHHHHHHhCCcEeCCee
Q psy4990 21 DVFVECEDKYGEIEEMNVCDNLGD---------HLVG----NVYIKFRREEDAEKAVNDLNNRWFGGRP 76 (130)
Q Consensus 21 Di~~e~~~kfG~I~~v~i~~~~~~---------~~~G----~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~ 76 (130)
-+++.+ +.||.|-.|.+-...+. .... -++|+|.+...|..+...|||..++|+.
T Consensus 90 rlReil-~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 90 RLREIL-SQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHH-HhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 478888 79999999999654321 1111 3689999999999999999999999986
No 126
>KOG1365|consensus
Probab=85.82 E-value=1.3 Score=37.34 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhcc----CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 15 YDNFFEDVFVECEDKY----GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kf----G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
|+....||.+.| ..- |..+.|..+...+++..|-+||.|..+++|+.|+.. |...++-|-|
T Consensus 171 fdat~~dVv~FF-~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 171 FDATALDVVEFF-GPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred CCcchHHHHHhc-CCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 445567888777 332 356677777777789999999999999999999873 2223344444
No 127
>KOG0112|consensus
Probab=84.60 E-value=0.98 Score=41.39 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=48.1
Q ss_pred HHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC--eeEEEEecc
Q psy4990 21 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSP 83 (130)
Q Consensus 21 Di~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G--r~I~v~~~~ 83 (130)
-+..+| ..||.|..|.+-. ..-++||.|++...|+.|++.|-|--|+| +.+.|.|+.
T Consensus 471 ~l~r~f-d~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 471 RLNREF-DRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred HHHHHh-hccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 356778 7999999976643 45699999999999999999999999977 668999883
No 128
>KOG0115|consensus
Probab=84.35 E-value=1 Score=35.77 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=44.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 74 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G 74 (130)
+.+.+.| +.||.|..-++..+..+.+.|-..|.|...-.|.+|.+..+-.-|.+
T Consensus 46 dll~~~f-~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 46 DLLEQAF-RRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred HHHHHhh-hhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 3567788 79999999988877667788899999999999999999886555544
No 129
>KOG2591|consensus
Probab=83.21 E-value=1.2 Score=39.10 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=41.0
Q ss_pred HHHHHHhhh-ccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC--cEeCCeeEEEEec
Q psy4990 20 EDVFVECED-KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN--RWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~-kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG--r~f~Gr~I~v~~~ 82 (130)
|+|+.+|.+ .+=++.+|...-+. .-||.|++..+|+.|.+.|.- ..|.|++|.|.+-
T Consensus 190 e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 190 EVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred HHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 566666631 13466666665542 479999999999999998874 4699999988654
No 130
>KOG0128|consensus
Probab=82.68 E-value=0.23 Score=45.02 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhccCCeeEEEEec-CCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~-~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
.-..|+...+ +.+|.|..+.|.. ...+..+|.+|+.|..+++|.+|+-..++..|+...+.+
T Consensus 679 ~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 679 MSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred hcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 4457889999 7999988887762 223678899999999999999999877777666444433
No 131
>KOG4213|consensus
Probab=80.21 E-value=4.9 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCC--CceeEEEEEecChHHHHHHHHHh
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGD--HLVGNVYIKFRREEDAEKAVNDL 67 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~--~~~G~~fV~F~~~~~A~~Ai~~l 67 (130)
+..+|+.+-. + |++..|..-+.... .-+|-+||+|.+.++|.++++.-
T Consensus 121 ~ql~~l~qw~-~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 121 DQLDDLNQWA-S--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHHHHHHHHh-c--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4556676665 3 88988888664332 45799999999999999887743
No 132
>KOG4574|consensus
Probab=79.91 E-value=1.5 Score=40.08 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=50.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe--CCeeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f--~Gr~I~v~~~~~~ 85 (130)
.-|-..| ++||.|.+.+..++- --+-|+|.+.+.|..|..+|+|+.. .|-+.+|.|+...
T Consensus 313 ssL~~l~-s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 313 SSLATLC-SDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred HHHHHHH-Hhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4567789 799999999998763 2478999999999999999999986 7888999998543
No 133
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=79.39 E-value=3.1 Score=27.05 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=25.9
Q ss_pred CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
.|.++-.+. +.+|++||+=.++.+...|++.+.+-+.
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccceee
Confidence 455555554 4799999999999999999988877443
No 134
>KOG4307|consensus
Probab=76.45 E-value=1.2 Score=40.16 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=53.2
Q ss_pred HHHHHHHhhhccCCeeE-EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 19 FEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~-v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
..++-..| .+--.|++ |.|..-..+...+.+||.|..++++.+|...-+..+.+.|.|+|.-+...
T Consensus 448 ~~~~v~~f-~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 448 IVPPVNKF-MGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred ccchhhhh-hhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 35677777 46556666 77776666788899999999999999999999999999999999876443
No 135
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=73.19 E-value=14 Score=26.57 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 18 FFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 18 ~~eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
+.+.|.... ...| .|.+|.++.. ..||+||+-...+++..+++.+.|
T Consensus 21 V~~~L~~~~-~~~~~~i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 21 VALMLAMRA-KKENLPIYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHH-HhCCCcEEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 334455444 2222 2777777764 589999999988999999998886
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=72.42 E-value=21 Score=22.25 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHHhhhcc---CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh
Q psy4990 20 EDVFVECEDKY---GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 67 (130)
Q Consensus 20 eDi~~e~~~kf---G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l 67 (130)
+||+.-| ..| .....|.-..+. .+=|.|.+.+.|.+|+.+|
T Consensus 19 ~dI~~y~-~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 19 DDIKAYF-SEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHH-HHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 3455555 355 234455545543 3778999999999999865
No 137
>KOG0804|consensus
Probab=70.97 E-value=9.4 Score=32.75 Aligned_cols=52 Identities=23% Similarity=0.398 Sum_probs=40.1
Q ss_pred HHHHHhhhcc-CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC
Q psy4990 21 DVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 74 (130)
Q Consensus 21 Di~~e~~~kf-G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G 74 (130)
|+...| ..| -.|.+|+|++++. ..+=-|-|+|.+.++|..-...+||+.|+.
T Consensus 90 Dll~F~-~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 90 DLLRFC-ASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred HHHHHH-HHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 444445 343 5789999999643 224458999999999999999999999976
No 138
>KOG4019|consensus
Probab=69.66 E-value=7.1 Score=29.62 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=32.5
Q ss_pred ceeEEEEEecChHHHHHHHHHhCCcEeCCe-eEEEEec
Q psy4990 46 LVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYAELS 82 (130)
Q Consensus 46 ~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr-~I~v~~~ 82 (130)
+.+++-|.|.+++.|..|...++++.|.|. .+++.|+
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 467899999999999999999999999999 6666665
No 139
>KOG0105|consensus
Probab=65.69 E-value=16 Score=28.16 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC
Q psy4990 21 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 74 (130)
Q Consensus 21 Di~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G 74 (130)
||++.+ .+-|.|.-..|.++ |..-|+|...++-+-|++.|+...|..
T Consensus 131 DLKDHm-ReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 131 DLKDHM-REAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred HHHHHH-HhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccC
Confidence 556666 47788877777775 577899999999999999999988854
No 140
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.45 E-value=26 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhccCCeeEEEEec
Q psy4990 16 DNFFEDVFVECEDKYGEIEEMNVCD 40 (130)
Q Consensus 16 ~~~~eDi~~e~~~kfG~I~~v~i~~ 40 (130)
+.+..+||+.| +..|+|.-+.|-.
T Consensus 5 e~i~~~iR~~f-s~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFF-SQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHH-HhcCcEEEEEEcc
Confidence 57889999999 8999998888854
No 141
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=60.24 E-value=19 Score=24.37 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=34.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
+...+++..++.+.+|.+-+.+.+ | -+...+||.|.+.....-+ .+|+.|
T Consensus 66 ~g~~~~e~k~~l~~~i~~~l~~~l----g-------------i~~~rv~I~f~~~~~~~w~---~~G~~f 115 (116)
T PTZ00397 66 IGGISRSNNSSIAAAITKILASHL----K-------------VKSERVYIEFKDCSAQNWA---FNGSTF 115 (116)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHh----C-------------cCcccEEEEEEECChhhee---EcceeC
Confidence 355677778888888888887777 2 3356799999988765443 445444
No 142
>KOG4660|consensus
Probab=57.29 E-value=12 Score=32.76 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=36.9
Q ss_pred cCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcE---eCCeeE-EEEec
Q psy4990 30 YGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRW---FGGRPV-YAELS 82 (130)
Q Consensus 30 fG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~---f~Gr~I-~v~~~ 82 (130)
.|.=.=+.++.+- .....|+|||.|.+++++..+.++.||.. |++..| ...|+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA 470 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA 470 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh
Confidence 3444444554432 23468999999999999999999999965 555444 55555
No 143
>KOG2193|consensus
Probab=54.69 E-value=1.8 Score=36.92 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=50.1
Q ss_pred HHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcc
Q psy4990 22 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 86 (130)
Q Consensus 22 i~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~ 86 (130)
+..-+...||.|.+|.+... +.....+-|+|.+.+.+..|+..|||..+....+++.|.|-+.
T Consensus 96 vld~Ll~qyg~ve~~eqvnt--~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 96 VLDSLLAQYGTVENCEQVNT--DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHHHhccCCHhHhhhhcc--chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 33333379999999988543 2234567789999999999999999999999999999997544
No 144
>KOG0112|consensus
Probab=54.31 E-value=4.3 Score=37.40 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=52.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
..+|+..| ..||+|.+|.|..+..+...-++||.|.+...|-.|...+.|..+..-.+.+-+-
T Consensus 386 eseiR~af-~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 386 ESEIRPAF-DESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhh-hhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 35889999 6999999999988755556679999999999999999999999887766666554
No 145
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=54.11 E-value=9.7 Score=25.89 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=33.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
++.+++++..+.-..|.+-+.+++. -+...+||.|.+...+.-+ .||+.|
T Consensus 64 ig~~~~~~n~~~s~~i~~~l~~~Lg-----------------Ip~~Riyi~f~d~~~~~~g---~nG~tf 113 (114)
T PF01187_consen 64 IGGLDPEQNKKYSAAITEFLEEELG-----------------IPPDRIYINFHDLPAWNVG---WNGTTF 113 (114)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHT-------------------GGGEEEEEEEETGGGEE---ETTEES
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhC-----------------CCcCceEEEEEECCHHHee---eCcEEc
Confidence 3456888888888888888888882 2245789999987755433 444443
No 146
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=52.87 E-value=72 Score=23.28 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 10 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 10 e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
+.++.++.|...|...|. . .+.++..-.. .+...+.|+|.-+.+|..-++.|--
T Consensus 14 ~~~~~ld~i~~~l~~L~~-~--~~~~l~~~~~---~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 14 MFQYKLDDIKNWLASLYK-P--RISDLKVRKV---EPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred hhHHHHHHHHHHHHHHHh-c--ccccceeecc---ccCceEEEEEechHHHHHHHHHHhh
Confidence 567778888888888883 3 3334444332 3457899999999999999988765
No 147
>PRK13817 ribosome-binding factor A; Provisional
Probab=51.08 E-value=41 Score=23.33 Aligned_cols=55 Identities=11% Similarity=0.229 Sum_probs=30.8
Q ss_pred cCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC-----cEeCCeeEEEEeccCcch
Q psy4990 30 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN-----RWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 30 fG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG-----r~f~Gr~I~v~~~~~~~~ 87 (130)
+-.|.+|.+..+ .....||+.+-..++...+++.|+. |..-++.+...+.|+-.|
T Consensus 31 ~vtVt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lR~~PeL~F 90 (119)
T PRK13817 31 KISLTAVSISPD---LKQAKVFYSLLENQNEKEVQKALNKATGYLRHLLAQATVLRYVPKLEF 90 (119)
T ss_pred ceEEeEEEECCC---CCEEEEEEEECCCccHHHHHHHHHHhHHHHHHHHHHhCCCeECCEEEE
Confidence 445666666654 4567888887654444444444443 223445556666665544
No 148
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.48 E-value=20 Score=22.33 Aligned_cols=47 Identities=23% Similarity=0.106 Sum_probs=33.5
Q ss_pred EEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhhhccccccccC
Q psy4990 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLE 100 (130)
Q Consensus 49 ~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~~~~~~~~~~~ 100 (130)
+.+|.|.+..+|.+|-+.|...-+.. ...|...--.+.|+-.-...+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~-----~liP~P~~i~~~CG~al~~~~ 49 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV-----RLIPTPREISAGCGLALRFEP 49 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE-----EEeCCChhccCCCCEEEEECh
Confidence 57999999999999999888755544 444655555666776544443
No 149
>KOG1999|consensus
Probab=50.01 E-value=35 Score=32.02 Aligned_cols=38 Identities=24% Similarity=0.508 Sum_probs=32.0
Q ss_pred CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 44 DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 44 ~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
++.+|++||+-..+.....|++.|-+-+.+ +.+.|-.-
T Consensus 207 D~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lVPik 244 (1024)
T KOG1999|consen 207 DHLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLVPIK 244 (1024)
T ss_pred cccceeEEEEechhHHHHHHHhhhhhheec-cEEEEehh
Confidence 378999999999999999999999997766 76666544
No 150
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=48.20 E-value=77 Score=20.79 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=31.7
Q ss_pred HHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 67 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l 67 (130)
.+|++.++.-|| +|.+|...... ...-.+||.+....+|......+
T Consensus 35 ~eIK~AvE~lf~VkV~~VnT~~~~--~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 35 PDIKRAVEELFDVKVEKVNTLITP--KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred HHHHHHHHHHhCCceEEEEeEEcC--CCcEEEEEEeCCCCcHHHHHHhh
Confidence 456666643366 78888876643 23357999999999988876544
No 151
>KOG3323|consensus
Probab=47.03 E-value=53 Score=23.90 Aligned_cols=50 Identities=22% Similarity=0.423 Sum_probs=35.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHh------hhccCCeeEEEEecCCCCCceeEEEEEecCh
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVEC------EDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE 57 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~------~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~ 57 (130)
|+.++-++|..+.|+.+.+-++.+. .++||..-.|++..+ |=+-|.++++
T Consensus 93 fH~am~~~ea~elY~qfl~~l~k~~~~~~ikdG~fGamm~v~l~n~------GPvTi~~es~ 148 (149)
T KOG3323|consen 93 FHLAMKGEEAKELYNQFLELLRKAYGADKIKDGKFGAMMQVHLVND------GPVTILLESP 148 (149)
T ss_pred hhhhcCchhhHHHHHHHHHHHHHHhCchhhhccccceEEEEEEecC------CCeEEEecCC
Confidence 5677888899999988887776655 136788888888775 3355665553
No 152
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.72 E-value=25 Score=27.78 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=25.4
Q ss_pred EEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 50 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 50 ~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
|||.|++..+|..|.+.+....- +.+.+..+|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC
Confidence 69999999999999997766543 4456766654
No 153
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=45.07 E-value=41 Score=21.45 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHHHHHhhhccC-CeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
..|+++| .++| .+..++.+...+ ..+.--.+|+-....+-.. .|+=++++|+.|.|+--
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEAL-KDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHH-HHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 3678888 5999 688898887654 3344567777776544333 56677788888887643
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.94 E-value=49 Score=20.69 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHhhhccC-CeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
++|++++ ...| +|..|+-+... +..+.--.||+.+...+.. +.++=+.+.+..|.++-.
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEEL-KDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHH-HHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecC
Confidence 5788888 5888 67777777654 3445567888888776533 345556677888877643
No 155
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=44.60 E-value=30 Score=25.60 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=29.7
Q ss_pred CceeEEEEEecChHHHHHHHHHhCCcEeCC-----eeEEEEeccCcc
Q psy4990 45 HLVGNVYIKFRREEDAEKAVNDLNNRWFGG-----RPVYAELSPVTD 86 (130)
Q Consensus 45 ~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G-----r~I~v~~~~~~~ 86 (130)
.....+||.|.+.++...-...++|..|-. .+..|+|++-.+
T Consensus 53 ~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 53 PTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQK 99 (176)
T ss_dssp S--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS--
T ss_pred CcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhc
Confidence 346789999999999999999999988832 334677776433
No 156
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=42.70 E-value=74 Score=21.82 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=27.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
+..++++..++.=..|.+=+.+++ | -+..++||.|.+.. -=..||+.|
T Consensus 66 iG~~~~~~n~~~s~~i~~~l~~~L----g-------------Ip~dRiYI~f~d~~-----~~G~nG~tF 113 (113)
T PTZ00450 66 WGEYAPSKPKMMTPRITAAITKEC----G-------------IPAERIYVFYYSTK-----HCGWNGTNF 113 (113)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHc----C-------------CCcccEEEEEEcHH-----HcccCcEeC
Confidence 345566555554445555555554 2 23457999999842 134666554
No 157
>KOG1134|consensus
Probab=42.54 E-value=64 Score=29.31 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=31.9
Q ss_pred CceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchh
Q psy4990 45 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 88 (130)
Q Consensus 45 ~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~ 88 (130)
...+.+||+|.+.-+|+.|.+....+....-.+.....|.+-++
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W 346 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYW 346 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCccccee
Confidence 34688999999999999999987766666655554444544443
No 158
>KOG4849|consensus
Probab=41.66 E-value=48 Score=27.93 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHHHHhhhccC--CeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG--~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+|+.+.+ ..-| .+.+++.+.+. .+.++||+.|...+..+.++-+..|--+.+.|..-+|.-++
T Consensus 95 ~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 95 ADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred HHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 3555555 2444 56667777654 47899999999999999999999999999999887776664
No 159
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=40.85 E-value=28 Score=26.55 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=30.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHH----hhhccCCeeEEEEec
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVE----CEDKYGEIEEMNVCD 40 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e----~~~kfG~I~~v~i~~ 40 (130)
+-+++|+.|+++-.++++-||.+. +..+||+|..|.+..
T Consensus 42 fe~~~sdse~Dd~vd~lE~~ve~~~~pl~rr~ygkvg~Ii~mI 84 (214)
T PF06837_consen 42 FERPLSDSELDDKVDKLETDVEDKVDPLVRRKYGKVGHIIWMI 84 (214)
T ss_pred HcccCcchhHHHHHHHHhhhHHhCCCHHHHhhccCcceeehHH
Confidence 446899999999999998888764 334689998876654
No 160
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=39.95 E-value=28 Score=24.56 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=26.0
Q ss_pred eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 33 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 33 I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
+..+.++. ...||+||+.....+...+++.+.|
T Consensus 28 ~~~~~vp~----~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 28 VYSILAPE----SLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred EEEEEccC----CCCcEEEEEEECcHHHHHHHhCCCC
Confidence 44555555 3689999999988888999988877
No 161
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=39.90 E-value=1.1e+02 Score=20.26 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhcc-CCeeEEEEecCC------CCCcee-EEEEEecChHHHHHHHH
Q psy4990 13 EHYDNFFEDVFVECEDKY-GEIEEMNVCDNL------GDHLVG-NVYIKFRREEDAEKAVN 65 (130)
Q Consensus 13 ~~~~~~~eDi~~e~~~kf-G~I~~v~i~~~~------~~~~~G-~~fV~F~~~~~A~~Ai~ 65 (130)
+..+++.+.+.+.+ .+. |.|.++.-.-.. ..+..| ++++.|.-..++.+.+.
T Consensus 21 ~~~~~~~~~~~~~i-~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 21 EELLKWIENYKKLL-RKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 33444555566666 355 578777654321 245677 68899998777777765
No 162
>COG3309 VapD Uncharacterized virulence-associated protein D [Function unknown]
Probab=38.44 E-value=83 Score=21.25 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHH
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai 64 (130)
.|..-.+||+..+ .++|-. ...|.+|+..+...+|.--+
T Consensus 20 ~~~~aY~Dir~~L-~~~gF~-----------~tQGSVYl~~~~i~~~~~~~ 58 (96)
T COG3309 20 NYRQAYDDIRRVL-ERHGFE-----------NTQGSVYLNDEGINQAAGTL 58 (96)
T ss_pred hHHHHHHHHHHHH-HHcCcc-----------cccceEEEccchHHHHHHHH
Confidence 3567789999999 499954 34799999999777665433
No 163
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=37.49 E-value=43 Score=23.32 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecC-----hHHHHHHHHHhCC--cEeCCeeEEEEeccCcch
Q psy4990 21 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-----EEDAEKAVNDLNN--RWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 21 Di~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~-----~~~A~~Ai~~lnG--r~f~Gr~I~v~~~~~~~~ 87 (130)
+|++.- -+.+.|.+|.+..+ -....|||.+-. .+.+.+|++...| +.+-|+.+...+.|+-.|
T Consensus 25 eikDpr-l~~~~Vt~V~vS~D---l~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~~PeL~F 94 (118)
T COG0858 25 EIKDPR-LGLVTVTDVEVSKD---LSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRKTPELHF 94 (118)
T ss_pred HccCCC-cCceEEEEEEEcCC---CceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEeCCeEEE
Confidence 344443 24555777877765 456788888633 3334455555555 345777788888776555
No 164
>PF14268 YoaP: YoaP-like
Probab=36.53 E-value=20 Score=20.76 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=28.7
Q ss_pred EEEecChHHHHHHHHHhC--CcEeCCeeEEEEeccCcchh
Q psy4990 51 YIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPVTDFR 88 (130)
Q Consensus 51 fV~F~~~~~A~~Ai~~ln--Gr~f~Gr~I~v~~~~~~~~~ 88 (130)
.|..++.++|+.|---.+ .-.|+|+-|+.+..++.+|.
T Consensus 4 ~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils~~kf~ 43 (44)
T PF14268_consen 4 LIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILSEKKFE 43 (44)
T ss_pred EEEeccHHHHhcCCCceeEEEEEECCEEEEeeccChhhhc
Confidence 577888888887766555 34679999999988776654
No 165
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=36.09 E-value=1.2e+02 Score=20.82 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=25.9
Q ss_pred CeeEEEEecCCCCCceeEEEEEecC----hHHHHHHHHHhCC--cEeCCeeEEEEeccCcc
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRR----EEDAEKAVNDLNN--RWFGGRPVYAELSPVTD 86 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~----~~~A~~Ai~~lnG--r~f~Gr~I~v~~~~~~~ 86 (130)
.|.+|.+..+ .....|||.+-. .+.+.++++...| |..-++.|...+.|.-.
T Consensus 36 tIt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~~L~~~~~~iR~~la~~l~lr~~P~L~ 93 (120)
T PRK00521 36 TVTDVEVSPD---LAHAKVYVTVLGDEEDKEEALAALKKAAGFLRSELGKRLRLRYVPELR 93 (120)
T ss_pred EEEEEEECCC---CCEEEEEEEECCCchhHHHHHHHHHHhHHHHHHHHHhhCCCccCCEEE
Confidence 4455555443 456788888854 2344444443333 22334444444444433
No 166
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=35.82 E-value=76 Score=27.78 Aligned_cols=63 Identities=17% Similarity=0.021 Sum_probs=41.3
Q ss_pred HHHHHh---hhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 21 DVFVEC---EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 21 Di~~e~---~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
|+...| ++.+|-|.++++--.+.......+.+.|.+.++|.+|+..+-.. .-.+-.+++.+..
T Consensus 282 dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~--g~~psa~ElmD~~ 347 (555)
T PLN02805 282 DLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLS--GIQVSRVELLDEV 347 (555)
T ss_pred cHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhC--CCCcEEEEEECHH
Confidence 455554 36789999998853222234567889999999999999876531 1235566666543
No 167
>KOG0862|consensus
Probab=35.65 E-value=30 Score=26.79 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChH
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREE 58 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~ 58 (130)
-..+||.+||...||+-..=.+.+| ++||+|.+--
T Consensus 86 ~YLedL~~EF~~~~~~~~~~~~~RP-------Y~FieFD~~I 120 (216)
T KOG0862|consen 86 SYLEDLAQEFDKSYGKNIIQPASRP-------YAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHHHHhcccccCCccCCC-------eeEEehhHHH
Confidence 4568999999766886433333343 8999998754
No 168
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.18 E-value=1.3e+02 Score=19.65 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=44.5
Q ss_pred cccCCCHHHHHH--HHHHHHHHHHHHhhhcc-CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 2 IISNVTDEEMQE--HYDNFFEDVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 2 ~~~~~s~~e~~~--~~~~~~eDi~~e~~~kf-G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
+..+++|+-++. +-.+-.+.+++.++ +. |+++++..... .....+-+++.+.+.|.++.-.+..
T Consensus 3 ~l~~~T~~g~~~~~~~~~R~~a~~~~~e-~~Gg~l~~~y~t~G---~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 3 ILARYTPEGAKGIKDSPDRAEAVRALIE-ALGGKLKSFYWTLG---EYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred EEEEeCHHHHHHHhhcHHHHHHHHHHHH-HcCCEEEEEEEecC---CCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 455677775542 11566677888884 65 68999988863 4567888999999988877765554
No 169
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=33.95 E-value=1.4e+02 Score=20.43 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=28.8
Q ss_pred CeeEEEEecCCCCCceeEEEEEecC-hHHHHHHHHHhCC-----cEeCCeeEEEEeccCcch
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLNN-----RWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~-~~~A~~Ai~~lnG-----r~f~Gr~I~v~~~~~~~~ 87 (130)
.|.+|.+..+ -....|||.+-. ..+...+++.|+. |..-|+.|...+.|.-.|
T Consensus 34 tVt~V~lS~D---l~~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~l~lR~~P~L~F 92 (114)
T TIGR00082 34 TVTKVEVSKD---LQHAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQAMRLRKTPELHF 92 (114)
T ss_pred EEeEEEECCC---CCEEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhhCCceECCEEEE
Confidence 4555555443 456788998873 3333445555543 223455556666665444
No 170
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=33.68 E-value=30 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.1
Q ss_pred eEEEEEecChHHHHHHHHHhCC
Q psy4990 48 GNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 48 G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
|++||++...++...+++.+.|
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCC
Confidence 9999999987777888888777
No 171
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=33.27 E-value=81 Score=17.96 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy4990 10 EMQEHYDNFFEDVFVEC 26 (130)
Q Consensus 10 e~~~~~~~~~eDi~~e~ 26 (130)
+++....+|.++++.|+
T Consensus 4 dle~~KqEIL~EvrkEl 20 (40)
T PF08776_consen 4 DLERLKQEILEEVRKEL 20 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444455555555555
No 172
>KOG0129|consensus
Probab=32.46 E-value=1.2e+02 Score=26.51 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=30.8
Q ss_pred ccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHH
Q psy4990 29 KYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVN 65 (130)
Q Consensus 29 kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~ 65 (130)
-||.|.=+-|..++. .=++|-+=|.|.+..+=.+||.
T Consensus 394 lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 394 LFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred hcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 579999999987743 4478889999999999888886
No 173
>PRK13818 ribosome-binding factor A; Provisional
Probab=31.96 E-value=1.6e+02 Score=20.40 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=30.5
Q ss_pred cCCeeEEEEecCCCCCceeEEEEEecC--hH---HHHHHHHHhCC--cEeCCeeEEEEeccCcch
Q psy4990 30 YGEIEEMNVCDNLGDHLVGNVYIKFRR--EE---DAEKAVNDLNN--RWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 30 fG~I~~v~i~~~~~~~~~G~~fV~F~~--~~---~A~~Ai~~lnG--r~f~Gr~I~v~~~~~~~~ 87 (130)
+-.|..|.+..+ .....|||.+-. .. .+.++++...| |..-++.+...+.|.-.|
T Consensus 31 ~vtVt~V~lS~D---l~~AkVyvs~~~~~~~~~~~~~~~L~~a~g~iR~~la~~l~lR~~P~L~F 92 (121)
T PRK13818 31 DVTITAVECTND---LSYATVYYSLLTEDEAKEKEVQEGLEKAKGMMRHLLGQTLTVYKVPELIF 92 (121)
T ss_pred ceEEeEEEECCC---CCEEEEEEEeCCCchhHHHHHHHHHHHhHHHHHHHHHhhCCCeECCEEEE
Confidence 456666666654 456788998864 22 23444554444 223445555556655443
No 174
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=30.51 E-value=99 Score=20.83 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=24.3
Q ss_pred CeeEEEEec-CCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 32 EIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 32 ~I~~v~i~~-~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
+|.+|+|-. ...++.+|+|-|.|.+.= +.+-++.+.|
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd~f-vI~~ikVieg 39 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDNEF-VVHDIRVIEG 39 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECCEE-EEeeeEEEEC
Confidence 477888853 345789999999998832 3334444444
No 175
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=30.03 E-value=1.7e+02 Score=20.15 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
+.+++.| ..|..++ ++.+-+. ....|++.|+|.+.-+..+-...|+.
T Consensus 32 ~~l~~~l-~~f~p~k-v~~l~~~-~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 32 EELLDKL-AEFNPLK-VKPLYGK-QGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp HHHHHHH-HH---SE-EEEEEET-TEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCce-eEECcCC-CCCcEEEEEEECCChHHHHHHHHHHH
Confidence 4666677 5788875 4444332 24579999999998766554444443
No 176
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=29.49 E-value=1.7e+02 Score=19.28 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEe-cCCCCCceeEEEEEecChHHHHHHHHHhC
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLN 68 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~-~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln 68 (130)
.|+++.++|++.| ++-.=...++. .+.++. -|.+++.++-..|++.+.
T Consensus 21 s~e~L~~~v~~~c--~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 21 SLEELCNEVRDMC--RFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLYE 69 (83)
T ss_pred CHHHHHHHHHHHh--CCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHHH
Confidence 5889999999999 56443344442 222222 578899999999998554
No 177
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.41 E-value=1.6e+02 Score=18.92 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh
Q psy4990 19 FEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 67 (130)
Q Consensus 19 ~eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l 67 (130)
..+|+..++.-|| +|.+|...... ...-.+||++..-..|......+
T Consensus 27 K~eIK~avE~lf~VkV~~Vnt~~~~--~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 27 KGDIKRAVEKLFDVKVEKVNTLITP--RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred HHHHHHHHHHHhCCceEEEEeEEcC--CCceEEEEEECCCCcHHHHHHhh
Confidence 3456666643366 78888776543 22457999999988888776544
No 178
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.20 E-value=3.5e+02 Score=24.01 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC--CcEe------CCeeEEEEeccC
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWF------GGRPVYAELSPV 84 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln--Gr~f------~Gr~I~v~~~~~ 84 (130)
+|-+.|.+.+ ..-+.|.+|.+.-| |++.+......-+......+. +..+ .|+.|.++|++.
T Consensus 58 eiA~~i~~~l-~~~~~~~~veiaGp------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa 126 (577)
T COG0018 58 EIAEEIAEKL-DTDEIIEKVEIAGP------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA 126 (577)
T ss_pred HHHHHHHHhc-cccCcEeEEEEcCC------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC
Confidence 4556777777 46667888888775 677777666555555555555 4444 578999999954
No 179
>smart00356 ZnF_C3H1 zinc finger.
Probab=27.72 E-value=45 Score=16.06 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=13.5
Q ss_pred hhhhccccccccCCCCCCc
Q psy4990 88 REACCRQYEMVLETKNADP 106 (130)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~ 106 (130)
+...|..+..+.|++|...
T Consensus 3 k~~~C~~~~~g~C~~g~~C 21 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRC 21 (27)
T ss_pred CCCcCcCccCCCCCCCCCc
Confidence 4456888888899877644
No 180
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.55 E-value=1.1e+02 Score=26.20 Aligned_cols=55 Identities=20% Similarity=0.047 Sum_probs=38.0
Q ss_pred ccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 29 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 29 kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
.+|-|.++++--.+.......+++.|.+.++|..|+..+.... -.+..+++.+..
T Consensus 216 tlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~--~~p~~~el~d~~ 270 (499)
T PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAG--IIPGGLEMMDNL 270 (499)
T ss_pred ccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcC--CCcEEEEeeCHH
Confidence 5788999988543323445778899999999999998875321 235566666543
No 181
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.22 E-value=1.5e+02 Score=17.99 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 68 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln 68 (130)
..++++.+ .++| +.-..+.-- ..=+++|+-+.+.+.|.++.+.|.
T Consensus 36 i~~~~~~~-~~~G-a~~~~~sGs---G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAA-EENG-ALGAKMSGS---GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHH-HHTT-ESEEEEETT---SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCC-CCceecCCC---CCCCeEEEEECCHHHHHHHHHHHH
Confidence 35666777 5888 555555442 123689999999999988888764
No 182
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=26.83 E-value=94 Score=21.43 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCceeEEEEEecChHHHHHHHHH
Q psy4990 44 DHLVGNVYIKFRREEDAEKAVND 66 (130)
Q Consensus 44 ~~~~G~~fV~F~~~~~A~~Ai~~ 66 (130)
+...-+.+++|.+.+.+..|...
T Consensus 63 dE~VvFsW~~Y~skq~rDA~~~k 85 (117)
T COG5507 63 DEEVVFSWIEYPSKQVRDAANAK 85 (117)
T ss_pred CcEEEEEEEEcCchhHHHHHHHH
Confidence 45678999999999877777654
No 183
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=25.93 E-value=2e+02 Score=18.89 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=23.0
Q ss_pred CeeEEEEecCCCCCceeEEEEEec-ChHHHHHHHHHhCC
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFR-REEDAEKAVNDLNN 69 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~-~~~~A~~Ai~~lnG 69 (130)
.|..|.+..+ .....+|+.+. +..+-..++..|+.
T Consensus 30 tIt~V~ls~D---l~~a~Vy~~~~~~~~~~~~~~~~L~~ 65 (104)
T PF02033_consen 30 TITRVELSPD---LSHAKVYVSILGDEEEQEEVLEALNK 65 (104)
T ss_dssp EEEEEEECTT---SSEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred EEEEEEECCC---CCEEEEEEEEecCchhHHHHHHHHHH
Confidence 4566666554 45788999986 66666666666654
No 184
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=25.23 E-value=1.5e+02 Score=24.63 Aligned_cols=55 Identities=20% Similarity=0.059 Sum_probs=37.3
Q ss_pred ccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 29 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 29 kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
.+|-|.++.+--.+.......+.+.|.+.++|.+|+..+... .-.+-.+++++..
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~p~a~el~d~~ 213 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA--GIIPAGMEFLDNL 213 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc--CCCcEEEEccCHH
Confidence 478899988853322344567788999999999999776532 2245566666543
No 185
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=24.78 E-value=1.3e+02 Score=26.74 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=48.0
Q ss_pred HHHHHh-----hhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhh
Q psy4990 21 DVFVEC-----EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90 (130)
Q Consensus 21 Di~~e~-----~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~ 90 (130)
|++..| +++.|-| .|++..-+........||-|.+.++|.++.+.+ -..|.--++..+|.+...|..+
T Consensus 239 Dl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~i-l~~~~~lP~a~Eym~r~~~d~~ 311 (564)
T PRK11183 239 DPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHI-LANFKNLPVAGEYMHRDAFDIA 311 (564)
T ss_pred CHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHH-HHhCCCCceeEeecCHHHHHHH
Confidence 445555 2233344 666643332345668999999999999999988 4567888999999987776654
No 186
>KOG2891|consensus
Probab=24.68 E-value=17 Score=29.65 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHhhhccCCeeEEEEecC-C-----CCC-----ceeE---------EEEEecChHHHHHHHHHhCCcEe
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-L-----GDH-----LVGN---------VYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~-----~~~-----~~G~---------~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
+-++..| ..||.|..|.||.- + ++. -.|+ +||+|..--.-..|+.+|.|+.+
T Consensus 176 ~rlr~a~-eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 176 DRLRKAF-EAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHH-HHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 4467778 49999999998741 1 121 1222 56776666655666666666554
No 187
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=24.15 E-value=64 Score=29.76 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=29.8
Q ss_pred ceeEEEEEecChHHHHHHHHHhCCcE-eCCeeEEEEeccCcchh
Q psy4990 46 LVGNVYIKFRREEDAEKAVNDLNNRW-FGGRPVYAELSPVTDFR 88 (130)
Q Consensus 46 ~~G~~fV~F~~~~~A~~Ai~~lnGr~-f~Gr~I~v~~~~~~~~~ 88 (130)
+.+.+||+|++...|+.|.+..-+.. +.+..+.....|.+--+
T Consensus 356 ~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W 399 (827)
T COG5594 356 PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIW 399 (827)
T ss_pred ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCcccccc
Confidence 45689999999999999999764444 44443555555555433
No 188
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.89 E-value=1.7e+02 Score=19.08 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.6
Q ss_pred CeeEEEEecC-CCCCceeEEEEEecC
Q psy4990 32 EIEEMNVCDN-LGDHLVGNVYIKFRR 56 (130)
Q Consensus 32 ~I~~v~i~~~-~~~~~~G~~fV~F~~ 56 (130)
+|.+|+|-.- ..++.+|++-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 4778888543 337889999999987
No 189
>KOG2187|consensus
Probab=22.79 E-value=46 Score=29.15 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.9
Q ss_pred CceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 45 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 45 ~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+..+++++.|+++..+.+|++.++|..+.+..+.+...
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 34578999999999999999999999999998888665
No 190
>KOG0129|consensus
Probab=22.48 E-value=1.8e+02 Score=25.45 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHhhhccCCeeEEEEecC--CC----CCcee---EEEEEecChHHHHHHHH
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN--LG----DHLVG---NVYIKFRREEDAEKAVN 65 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~--~~----~~~~G---~~fV~F~~~~~A~~Ai~ 65 (130)
+.|..-| ..||.+. |.-+ .. ..++| +||+.|+++.+.+.-+.
T Consensus 274 ~~i~~~F-~~FGs~~---VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 274 AQINASF-GQFGSVK---VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred HHHHhhc-ccccceE---eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 4677778 6888763 3222 11 23566 99999999887664433
No 191
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=22.35 E-value=2.4e+02 Score=18.59 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 67 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l 67 (130)
.|++|.+.|++.| ++..-..|+...+ | -+|.-.+.++-..|++..
T Consensus 23 ~f~dL~~kIrdkf--~~~~~~~iKykDE------G-D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 23 GFADFEDKIRDKF--GFKRRLKIKMKDD------G-DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred CHHHHHHHHHHHh--CCCCceEEEEEcC------C-CCccccCHHHHHHHHHHH
Confidence 4788999999999 6765444444443 2 577888888777777643
No 192
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=22.16 E-value=3.3e+02 Score=20.13 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhccC--CeeEEEEecCCC-CCce
Q psy4990 15 YDNFFEDVFVECEDKYG--EIEEMNVCDNLG-DHLV 47 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG--~I~~v~i~~~~~-~~~~ 47 (130)
...+.++..+.|+.+|| .|..+.|..+.+ .|..
T Consensus 100 ~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H 135 (196)
T PF01076_consen 100 QKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMH 135 (196)
T ss_pred HHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceE
Confidence 34455555666656788 799999976643 4443
No 193
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=21.33 E-value=3e+02 Score=24.43 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=28.5
Q ss_pred EEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 49 ~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+.||+-.. ..|...++.|++.++.|+.|.++.+.
T Consensus 528 ~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 528 HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 56777665 45888999999999999999999874
No 194
>PF02234 CDI: Cyclin-dependent kinase inhibitor; InterPro: IPR003175 Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs). CDIs are involved in cell cycle arrest at the G1 phase.; GO: 0004861 cyclin-dependent protein kinase inhibitor activity, 0007050 cell cycle arrest, 0005634 nucleus; PDB: 1H27_E 1JSU_C.
Probab=21.22 E-value=53 Score=19.37 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhccC
Q psy4990 5 NVTDEEMQEHYDNFFEDVFVECEDKYG 31 (130)
Q Consensus 5 ~~s~~e~~~~~~~~~eDi~~e~~~kfG 31 (130)
-++.+|+..++......+.+++..||+
T Consensus 6 p~d~~e~~~~~~~~l~~~~e~~~~kWN 32 (51)
T PF02234_consen 6 PVDHEELERFFQEELQEQREEFSEKWN 32 (51)
T ss_dssp ---HHHHHHHHHHHHTTTTHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788999888888888887755565
No 195
>PRK11901 hypothetical protein; Reviewed
Probab=20.56 E-value=2.1e+02 Score=23.67 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=29.0
Q ss_pred hccCCeeEEEEecC--CCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 28 DKYGEIEEMNVCDN--LGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 28 ~kfG~I~~v~i~~~--~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
.+++ +.+++|... ....+...+|=.|.+.++|..|+..|--
T Consensus 264 ~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 264 KKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred HHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3454 456677642 2234667788899999999999998754
No 196
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=1.3e+02 Score=23.22 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCcEeCCeeEEEEeccCcc
Q psy4990 58 EDAEKAVNDLNNRWFGGRPVYAELSPVTD 86 (130)
Q Consensus 58 ~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~ 86 (130)
.-++.|++.|||+.++|-.|+....|..-
T Consensus 17 NPs~e~vk~L~~~~i~g~~V~~~~lP~~f 45 (207)
T COG2039 17 NPSWEAVKELNGRIIGGAEVKGRILPVVF 45 (207)
T ss_pred ChHHHHHHhcCcccccCceEEEEEcCccH
Confidence 35788999999999999999998887653
Done!