Query psy4990
Match_columns 130
No_of_seqs 154 out of 1137
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 22:59:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v4m_A Splicing factor U2AF 65 99.9 6.8E-24 2.3E-28 144.5 8.5 88 2-90 10-102 (105)
2 3s6e_A RNA-binding protein 39; 99.9 1.2E-22 4.2E-27 140.5 7.1 88 2-93 12-101 (114)
3 3ue2_A Poly(U)-binding-splicin 99.9 7.8E-23 2.7E-27 142.2 6.1 85 2-90 25-114 (118)
4 1jmt_A Splicing factor U2AF 35 99.9 2.8E-21 9.5E-26 131.2 9.0 77 6-83 27-104 (104)
5 2pe8_A Splicing factor 45; RRM 99.8 1.7E-21 5.8E-26 132.6 7.0 86 2-91 13-100 (105)
6 2dit_A HIV TAT specific factor 99.7 5.9E-18 2E-22 115.2 8.8 83 2-88 20-106 (112)
7 3dxb_A Thioredoxin N-terminall 99.7 1.9E-18 6.5E-23 129.5 6.2 84 3-90 130-218 (222)
8 2nlw_A Eukaryotic translation 99.6 1.5E-16 5.3E-21 106.9 4.4 83 2-87 19-103 (105)
9 3s8s_A Histone-lysine N-methyl 99.6 1.9E-15 6.6E-20 102.9 9.5 75 2-84 10-85 (110)
10 4fxv_A ELAV-like protein 1; RN 99.6 1.4E-15 4.9E-20 101.6 8.4 73 2-82 23-96 (99)
11 2krb_A Eukaryotic translation 99.6 1.2E-16 4.2E-21 102.3 2.5 75 2-79 5-80 (81)
12 3ns6_A Eukaryotic translation 99.6 7.3E-16 2.5E-20 102.8 5.9 72 15-87 22-96 (100)
13 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-15 3.8E-20 101.6 5.3 73 1-86 10-82 (89)
14 2ywk_A Putative RNA-binding pr 99.6 6.1E-15 2.1E-19 96.4 7.9 63 20-83 31-93 (95)
15 3md1_A Nuclear and cytoplasmic 99.6 1.3E-14 4.3E-19 92.6 8.5 74 2-83 5-79 (83)
16 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.3E-14 4.3E-19 93.3 8.3 63 20-83 21-84 (87)
17 3ulh_A THO complex subunit 4; 99.6 1.4E-14 4.9E-19 96.7 8.2 63 20-83 44-106 (107)
18 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7E-15 2.4E-19 94.2 6.4 62 20-82 22-84 (85)
19 2do4_A Squamous cell carcinoma 99.6 1.6E-14 5.6E-19 95.4 8.2 63 20-83 32-94 (100)
20 4f25_A Polyadenylate-binding p 99.5 1E-14 3.5E-19 99.4 7.1 74 1-83 8-81 (115)
21 1whw_A Hypothetical protein ri 99.5 1.5E-14 5E-19 95.4 7.2 75 2-84 12-87 (99)
22 2do0_A HnRNP M, heterogeneous 99.5 2.9E-14 9.8E-19 96.2 8.6 64 20-84 30-93 (114)
23 2cqc_A Arginine/serine-rich sp 99.5 2.8E-14 9.6E-19 93.1 8.0 63 20-83 30-93 (95)
24 2e5h_A Zinc finger CCHC-type a 99.5 1.8E-14 6E-19 94.0 7.0 62 20-82 31-93 (94)
25 2dgo_A Cytotoxic granule-assoc 99.5 6.5E-14 2.2E-18 94.7 9.7 64 20-84 30-94 (115)
26 2d9p_A Polyadenylate-binding p 99.5 1.8E-14 6.1E-19 95.7 6.8 74 2-84 19-92 (103)
27 2fy1_A RNA-binding motif prote 99.5 2E-14 7E-19 98.3 7.1 75 2-84 11-85 (116)
28 2x1f_A MRNA 3'-END-processing 99.5 3.1E-14 1.1E-18 93.6 7.8 65 20-85 17-82 (96)
29 2cq0_A Eukaryotic translation 99.5 2.5E-14 8.7E-19 95.0 7.1 64 20-84 30-94 (103)
30 2a3j_A U1 small nuclear ribonu 99.5 1.9E-14 6.4E-19 100.8 6.7 79 2-86 33-111 (127)
31 2lkz_A RNA-binding protein 5; 99.5 8.4E-15 2.9E-19 97.7 4.6 75 1-83 12-93 (95)
32 2dnz_A Probable RNA-binding pr 99.5 2.7E-14 9.3E-19 93.3 7.0 63 20-83 20-83 (95)
33 2dnh_A Bruno-like 5, RNA bindi 99.5 3.4E-14 1.2E-18 94.5 7.5 64 20-84 30-96 (105)
34 3p5t_L Cleavage and polyadenyl 99.5 9.9E-15 3.4E-19 95.2 4.7 75 1-83 4-81 (90)
35 1x5t_A Splicing factor 3B subu 99.5 1.7E-14 5.9E-19 94.4 5.7 75 2-84 9-85 (96)
36 2dgx_A KIAA0430 protein; RRM d 99.5 3.6E-14 1.2E-18 93.6 7.2 76 2-83 13-88 (96)
37 2cpz_A CUG triplet repeat RNA- 99.5 3.5E-14 1.2E-18 96.1 7.3 63 20-83 40-103 (115)
38 2cq3_A RNA-binding protein 9; 99.5 6.2E-14 2.1E-18 93.1 8.2 63 20-84 30-92 (103)
39 1x5u_A Splicing factor 3B subu 99.5 2.6E-14 9E-19 95.1 6.2 63 20-83 30-93 (105)
40 2cqi_A Nucleolysin TIAR; RNA r 99.5 6.1E-14 2.1E-18 93.1 7.9 63 20-84 30-92 (103)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.3E-14 8E-19 94.9 5.7 64 20-84 27-91 (102)
42 2cph_A RNA binding motif prote 99.5 4.1E-14 1.4E-18 94.3 6.8 64 20-84 30-96 (107)
43 1p27_B RNA-binding protein 8A; 99.5 5.1E-14 1.8E-18 93.8 7.3 63 20-83 38-101 (106)
44 1s79_A Lupus LA protein; RRM, 99.5 2.5E-14 8.5E-19 96.5 5.8 73 2-83 15-87 (103)
45 2cpf_A RNA binding motif prote 99.5 4.2E-14 1.4E-18 93.0 6.7 75 2-84 9-87 (98)
46 2kt5_A RNA and export factor-b 99.5 4.3E-14 1.5E-18 97.0 6.9 64 20-84 50-113 (124)
47 2dnm_A SRP46 splicing factor; 99.5 3E-14 1E-18 94.6 5.9 64 20-84 28-92 (103)
48 3ucg_A Polyadenylate-binding p 99.5 7.8E-14 2.7E-18 89.9 7.6 62 20-83 21-83 (89)
49 2la6_A RNA-binding protein FUS 99.5 4.3E-14 1.5E-18 93.4 6.5 62 20-82 28-98 (99)
50 2cpi_A CCR4-NOT transcription 99.5 2.9E-14 1E-18 96.5 5.6 63 20-83 30-99 (111)
51 2dgv_A HnRNP M, heterogeneous 99.5 5.3E-14 1.8E-18 91.4 6.6 62 20-83 23-84 (92)
52 1x5s_A Cold-inducible RNA-bind 99.5 3.1E-14 1E-18 94.3 5.5 74 2-83 16-90 (102)
53 2lxi_A RNA-binding protein 10; 99.5 1.1E-14 3.8E-19 95.7 3.3 63 20-83 16-81 (91)
54 4a8x_A RNA-binding protein wit 99.5 4.6E-14 1.6E-18 90.7 6.2 63 20-83 19-83 (88)
55 1oo0_B CG8781-PA, drosophila Y 99.5 8.5E-14 2.9E-18 93.4 7.5 63 20-83 41-104 (110)
56 1p1t_A Cleavage stimulation fa 99.5 3.9E-14 1.3E-18 93.9 5.6 64 20-84 23-87 (104)
57 2dhg_A TRNA selenocysteine ass 99.5 4.1E-14 1.4E-18 94.0 5.5 74 2-83 13-88 (104)
58 1whx_A Hypothetical protein ri 99.5 3.7E-14 1.3E-18 96.3 5.4 73 2-87 14-86 (111)
59 2jrs_A RNA-binding protein 39; 99.5 5.8E-14 2E-18 94.9 6.0 63 20-83 41-104 (108)
60 1x4a_A Splicing factor, argini 99.5 1.1E-13 3.8E-18 92.8 7.2 61 20-83 37-97 (109)
61 2mss_A Protein (musashi1); RNA 99.5 2.2E-14 7.7E-19 90.0 3.5 61 20-82 14-75 (75)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.3E-14 2.8E-18 96.6 6.7 73 2-82 67-140 (140)
63 2khc_A Testis-specific RNP-typ 99.5 6.1E-14 2.1E-18 95.2 5.8 62 20-82 55-117 (118)
64 2div_A TRNA selenocysteine ass 99.5 1.1E-13 3.8E-18 91.1 6.5 74 2-83 13-92 (99)
65 3ex7_B RNA-binding protein 8A; 99.5 8.6E-14 2.9E-18 95.5 6.1 74 2-83 26-100 (126)
66 2cq4_A RNA binding motif prote 99.5 1.4E-13 4.9E-18 93.0 7.0 63 20-84 40-103 (114)
67 2cpe_A RNA-binding protein EWS 99.5 1.1E-13 3.6E-18 93.4 6.3 63 20-83 30-101 (113)
68 1u6f_A Tcubp1, RNA-binding pro 99.5 1.4E-13 4.9E-18 95.9 7.1 64 20-84 57-121 (139)
69 2dgs_A DAZ-associated protein 99.5 1.4E-13 4.9E-18 90.7 6.7 62 20-83 25-87 (99)
70 2dgw_A Probable RNA-binding pr 99.5 1.9E-13 6.4E-18 88.8 7.1 62 20-84 25-86 (91)
71 2err_A Ataxin-2-binding protei 99.5 8.7E-14 3E-18 94.0 5.7 62 20-83 44-105 (109)
72 2kxn_B Transformer-2 protein h 99.5 1.2E-13 4E-18 96.4 6.5 75 2-84 50-125 (129)
73 1x4h_A RNA-binding protein 28; 99.5 1.9E-13 6.3E-18 91.6 7.3 63 20-83 30-99 (111)
74 3n9u_C Cleavage and polyadenyl 99.4 2.2E-13 7.5E-18 98.1 7.8 65 19-84 69-136 (156)
75 2kn4_A Immunoglobulin G-bindin 99.4 1.3E-13 4.5E-18 97.8 6.6 74 2-83 74-148 (158)
76 2dgp_A Bruno-like 4, RNA bindi 99.4 1.1E-13 3.8E-18 92.2 5.7 64 20-84 28-95 (106)
77 2db1_A Heterogeneous nuclear r 99.4 1.3E-13 4.3E-18 94.6 6.1 70 19-90 31-103 (118)
78 2ek1_A RNA-binding protein 12; 99.4 6E-14 2.1E-18 91.6 4.3 63 20-83 30-93 (95)
79 1x5o_A RNA binding motif, sing 99.4 1.8E-13 6.2E-18 92.4 6.8 63 20-83 40-110 (114)
80 1h2v_Z 20 kDa nuclear CAP bind 99.4 3.8E-13 1.3E-17 95.6 8.5 65 19-84 53-118 (156)
81 2cqd_A RNA-binding region cont 99.4 2.7E-13 9.2E-18 91.9 7.4 62 20-83 32-94 (116)
82 3md3_A Nuclear and cytoplasmic 99.4 3.7E-13 1.3E-17 94.3 8.4 63 20-83 102-165 (166)
83 1nu4_A U1A RNA binding domain; 99.4 1.1E-13 3.6E-18 90.8 5.2 77 2-84 12-88 (97)
84 1wi8_A EIF-4B, eukaryotic tran 99.4 1.7E-13 5.8E-18 91.2 6.2 62 20-84 30-93 (104)
85 2g4b_A Splicing factor U2AF 65 99.4 3E-13 1E-17 95.8 7.9 63 19-82 108-171 (172)
86 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.5E-13 1.2E-17 96.9 8.3 74 2-83 76-150 (165)
87 2dh8_A DAZ-associated protein 99.4 2.7E-13 9.1E-18 90.3 7.1 74 1-83 19-93 (105)
88 2cpy_A RNA-binding protein 12; 99.4 1.2E-13 4.2E-18 93.8 5.5 69 20-90 30-99 (114)
89 1sjq_A Polypyrimidine tract-bi 99.4 1.5E-13 5E-18 93.7 5.5 70 2-84 20-91 (105)
90 3s7r_A Heterogeneous nuclear r 99.4 5.3E-13 1.8E-17 85.9 7.8 61 20-82 26-87 (87)
91 1x4d_A Matrin 3; structural ge 99.4 1.3E-13 4.5E-18 93.2 4.7 71 2-84 19-91 (102)
92 3lqv_A PRE-mRNA branch site pr 99.4 2.3E-13 7.9E-18 91.9 5.9 62 20-84 23-84 (115)
93 2dng_A Eukaryotic translation 99.4 5.1E-13 1.8E-17 88.7 7.5 61 20-83 30-91 (103)
94 2cqp_A RNA-binding protein 12; 99.4 1.1E-13 3.7E-18 91.0 4.1 63 20-83 30-93 (98)
95 2dgu_A Heterogeneous nuclear r 99.4 6.7E-13 2.3E-17 88.3 7.7 57 20-84 26-82 (103)
96 3r27_A HnRNP L, heterogeneous 99.4 3.3E-13 1.1E-17 91.2 6.2 58 20-83 36-95 (100)
97 1wg5_A Heterogeneous nuclear r 99.4 1.9E-13 6.4E-18 91.5 4.9 66 19-86 29-95 (104)
98 3nmr_A Cugbp ELAV-like family 99.4 5.2E-13 1.8E-17 94.4 7.4 64 19-83 109-175 (175)
99 1sjr_A Polypyrimidine tract-bi 99.4 4.6E-13 1.6E-17 97.9 7.3 62 20-85 61-124 (164)
100 2ki2_A SS-DNA binding protein 99.4 4.7E-14 1.6E-18 91.4 1.8 63 20-84 16-79 (90)
101 2ytc_A PRE-mRNA-splicing facto 99.4 3.4E-13 1.1E-17 86.3 5.8 57 20-82 27-84 (85)
102 2jwn_A Embryonic polyadenylate 99.4 1.2E-12 4.2E-17 89.4 8.8 63 19-83 50-113 (124)
103 2cq2_A Hypothetical protein LO 99.4 5.4E-13 1.8E-17 92.2 6.8 62 19-86 41-107 (114)
104 1x4g_A Nucleolysin TIAR; struc 99.4 4.4E-13 1.5E-17 90.0 6.2 58 20-83 40-97 (109)
105 1x4c_A Splicing factor, argini 99.4 5.8E-13 2E-17 89.5 6.8 58 20-84 30-92 (108)
106 2cpj_A Non-POU domain-containi 99.4 3.2E-13 1.1E-17 89.1 5.3 58 20-83 30-87 (99)
107 1x5p_A Negative elongation fac 99.4 1.5E-12 5.2E-17 85.6 8.6 60 19-84 27-86 (97)
108 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1E-13 3.5E-18 92.0 2.9 61 20-83 34-96 (100)
109 2dnn_A RNA-binding protein 12; 99.4 9.4E-13 3.2E-17 89.7 7.8 70 18-90 29-98 (109)
110 3zzy_A Polypyrimidine tract-bi 99.4 8.1E-13 2.8E-17 93.2 7.6 61 20-85 43-106 (130)
111 1why_A Hypothetical protein ri 99.4 4.6E-13 1.6E-17 88.1 5.9 58 20-83 32-91 (97)
112 2hvz_A Splicing factor, argini 99.4 1.7E-13 5.8E-18 90.6 3.8 60 20-84 15-74 (101)
113 2fc9_A NCL protein; structure 99.4 5.2E-13 1.8E-17 88.3 6.0 72 2-84 19-90 (101)
114 2jvr_A Nucleolar protein 3; RN 99.4 3.1E-13 1.1E-17 92.5 5.0 60 20-83 43-103 (111)
115 2hgl_A HNRPF protein, heteroge 99.4 2.3E-13 7.9E-18 96.3 4.4 68 18-87 57-127 (136)
116 2f3j_A RNA and export factor b 99.4 3.4E-13 1.2E-17 98.8 5.5 64 20-84 103-166 (177)
117 3tyt_A Heterogeneous nuclear r 99.4 4.4E-13 1.5E-17 100.0 6.1 72 1-83 7-78 (205)
118 2qfj_A FBP-interacting repress 99.4 8.1E-13 2.8E-17 96.7 7.3 64 19-83 139-203 (216)
119 2jvo_A Nucleolar protein 3; nu 99.4 6.7E-13 2.3E-17 89.7 6.4 57 20-84 46-102 (108)
120 2dnq_A RNA-binding protein 4B; 99.4 5.9E-13 2E-17 86.4 5.9 56 20-83 23-78 (90)
121 1b7f_A Protein (SXL-lethal pro 99.4 8.8E-13 3E-17 92.9 7.2 62 20-82 104-168 (168)
122 2cq1_A PTB-like protein L; RRM 99.4 8E-13 2.7E-17 89.0 6.6 59 20-84 30-90 (101)
123 1x4e_A RNA binding motif, sing 99.4 6.6E-14 2.2E-18 89.8 1.1 62 20-82 20-82 (85)
124 4f02_A Polyadenylate-binding p 99.4 8.1E-13 2.8E-17 98.1 7.2 63 20-84 118-180 (213)
125 2lea_A Serine/arginine-rich sp 99.4 2.8E-13 9.6E-18 95.0 4.3 74 2-83 51-125 (135)
126 3q2s_C Cleavage and polyadenyl 99.4 5.1E-13 1.7E-17 101.5 6.0 75 2-84 72-149 (229)
127 1wex_A Hypothetical protein (r 99.4 4.3E-13 1.5E-17 90.7 4.9 60 20-85 30-91 (104)
128 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2E-13 6.9E-18 85.7 3.0 61 20-82 15-76 (77)
129 2diu_A KIAA0430 protein; struc 99.4 5.1E-13 1.8E-17 89.7 5.1 70 2-84 13-83 (96)
130 2ad9_A Polypyrimidine tract-bi 99.4 4.7E-13 1.6E-17 93.0 5.0 70 2-84 35-106 (119)
131 1wel_A RNA-binding protein 12; 99.4 1.6E-13 5.6E-18 94.3 2.6 67 19-87 39-106 (124)
132 2yh0_A Splicing factor U2AF 65 99.4 1.6E-12 5.4E-17 94.0 7.8 64 19-83 128-192 (198)
133 1fxl_A Paraneoplastic encephal 99.4 2.5E-12 8.4E-17 90.1 8.5 64 20-84 17-81 (167)
134 1x4b_A Heterogeneous nuclear r 99.4 7.9E-13 2.7E-17 89.5 5.7 62 20-83 42-104 (116)
135 3pgw_S U1-70K; protein-RNA com 99.4 1.7E-12 5.9E-17 107.0 8.9 76 1-84 105-181 (437)
136 2la4_A Nuclear and cytoplasmic 99.4 4.8E-13 1.6E-17 88.4 4.5 59 19-83 41-99 (101)
137 2i2y_A Fusion protein consists 99.4 5.6E-13 1.9E-17 94.1 4.9 59 20-83 88-146 (150)
138 1wez_A HnRNP H', FTP-3, hetero 99.4 5.8E-13 2E-17 89.3 4.7 62 19-83 29-90 (102)
139 2dgt_A RNA-binding protein 30; 99.4 1.9E-12 6.4E-17 84.3 7.0 56 20-83 25-80 (92)
140 2dis_A Unnamed protein product 99.3 9.7E-13 3.3E-17 87.9 5.5 63 20-83 23-90 (109)
141 1wg1_A KIAA1579 protein, homol 99.3 7.9E-13 2.7E-17 85.7 4.9 60 20-86 20-79 (88)
142 1wf1_A RNA-binding protein RAL 99.3 9.5E-13 3.3E-17 88.5 5.4 56 20-83 43-98 (110)
143 2rs2_A Musashi-1, RNA-binding 99.3 1.5E-12 5.3E-17 87.9 6.4 62 20-83 40-102 (109)
144 3md3_A Nuclear and cytoplasmic 99.3 6.9E-12 2.3E-16 87.7 10.0 65 19-84 14-78 (166)
145 2m2b_A RNA-binding protein 10; 99.3 1.9E-13 6.4E-18 95.0 1.9 74 2-84 27-107 (131)
146 2xnq_A Nuclear polyadenylated 99.3 5.1E-12 1.7E-16 83.6 8.8 56 20-83 38-93 (97)
147 2dnp_A RNA-binding protein 14; 99.3 2.3E-12 7.8E-17 83.6 6.6 56 20-83 24-79 (90)
148 1fxl_A Paraneoplastic encephal 99.3 4.6E-12 1.6E-16 88.7 8.7 63 19-82 102-167 (167)
149 2cqg_A TDP-43, TAR DNA-binding 99.3 4.4E-12 1.5E-16 84.0 8.1 61 20-83 30-91 (103)
150 2cpd_A Apobec-1 stimulating pr 99.3 3.3E-12 1.1E-16 84.2 7.4 67 2-83 19-87 (99)
151 2e5j_A Methenyltetrahydrofolat 99.3 7.2E-13 2.5E-17 87.2 4.1 60 20-84 34-93 (97)
152 1iqt_A AUF1, heterogeneous nuc 99.3 3.8E-13 1.3E-17 84.2 2.5 61 20-82 14-75 (75)
153 3smz_A Protein raver-1, ribonu 99.3 4.5E-12 1.5E-16 97.0 9.0 65 19-84 199-263 (284)
154 2bz2_A Negative elongation fac 99.3 2.2E-12 7.7E-17 89.0 6.5 61 19-85 51-111 (121)
155 2xs2_A Deleted in azoospermia- 99.3 1.7E-12 6E-17 85.8 5.6 60 20-82 24-83 (102)
156 2kvi_A Nuclear polyadenylated 99.3 1E-12 3.5E-17 86.4 4.1 56 20-83 26-81 (96)
157 1x4f_A Matrin 3; structural ge 99.3 3.7E-13 1.3E-17 92.6 1.9 59 20-84 41-101 (112)
158 1fjc_A Nucleolin RBD2, protein 99.3 9.4E-13 3.2E-17 86.2 3.7 60 19-83 30-89 (96)
159 2lmi_A GRSF-1, G-rich sequence 99.3 2.1E-13 7.1E-18 91.7 0.4 68 19-88 25-95 (107)
160 2lcw_A RNA-binding protein FUS 99.0 1.8E-13 6.3E-18 92.8 0.0 65 18-83 20-93 (116)
161 1b7f_A Protein (SXL-lethal pro 99.3 3.7E-12 1.3E-16 89.6 6.7 64 20-84 18-82 (168)
162 2e44_A Insulin-like growth fac 99.3 9.5E-12 3.3E-16 81.3 8.0 62 19-84 29-91 (96)
163 2dha_A FLJ20171 protein; RRM d 99.3 1.3E-12 4.3E-17 91.0 3.8 72 17-90 35-110 (123)
164 2cpx_A Hypothetical protein FL 99.3 1.6E-12 5.3E-17 87.7 4.0 61 20-84 40-104 (115)
165 4f02_A Polyadenylate-binding p 99.3 1E-11 3.5E-16 92.1 8.6 75 2-84 19-94 (213)
166 2e5i_A Heterogeneous nuclear r 99.3 1.2E-11 3.9E-16 86.5 8.2 59 20-84 40-101 (124)
167 1l3k_A Heterogeneous nuclear r 99.3 8.9E-12 3E-16 89.8 7.5 63 19-83 118-181 (196)
168 2cqh_A IGF-II mRNA-binding pro 99.3 3E-12 1E-16 83.4 4.3 68 2-83 12-81 (93)
169 3beg_B Splicing factor, argini 99.3 3E-12 1E-16 87.1 4.5 56 20-82 31-86 (115)
170 2ghp_A U4/U6 snRNA-associated 99.3 1.3E-11 4.4E-16 94.8 8.5 63 19-83 225-289 (292)
171 2hgn_A Heterogeneous nuclear r 99.3 8.8E-13 3E-17 93.6 1.8 63 19-84 60-122 (139)
172 2cjk_A Nuclear polyadenylated 99.3 8.4E-12 2.9E-16 87.9 6.8 63 19-83 101-164 (167)
173 3egn_A RNA-binding protein 40; 99.3 1.9E-12 6.4E-17 90.8 3.3 62 19-83 59-128 (143)
174 3pgw_A U1-A; protein-RNA compl 99.3 1.4E-11 4.9E-16 94.1 8.3 78 1-84 12-89 (282)
175 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-11 4E-16 91.6 7.5 63 18-82 122-184 (193)
176 1fj7_A Nucleolin RBD1, protein 99.3 2.7E-13 9.2E-18 89.7 -1.4 62 20-83 32-93 (101)
177 1fje_B Nucleolin RBD12, protei 99.3 7.3E-12 2.5E-16 89.1 5.9 59 20-83 114-172 (175)
178 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.3E-16 82.7 7.1 58 19-83 31-88 (100)
179 2hzc_A Splicing factor U2AF 65 99.2 9.2E-12 3.1E-16 79.7 5.6 54 20-80 21-85 (87)
180 2qfj_A FBP-interacting repress 99.2 1.1E-11 3.9E-16 90.5 6.7 65 19-84 42-107 (216)
181 2fc8_A NCL protein; structure 99.2 1.6E-11 5.6E-16 81.0 6.7 60 20-83 30-90 (102)
182 2e5g_A U6 snRNA-specific termi 99.2 9.7E-12 3.3E-16 81.3 5.4 58 20-83 23-80 (94)
183 2hgm_A HNRPF protein, heteroge 99.2 3.4E-12 1.2E-16 89.3 2.8 64 19-85 56-121 (126)
184 3pgw_A U1-A; protein-RNA compl 99.2 2.2E-11 7.5E-16 93.0 7.5 59 19-82 221-280 (282)
185 3u1l_A PRE-mRNA-splicing facto 99.2 3.4E-11 1.1E-15 92.7 7.7 61 18-84 156-228 (240)
186 1l3k_A Heterogeneous nuclear r 99.2 4.7E-11 1.6E-15 86.0 7.8 63 20-84 28-91 (196)
187 2j8a_A Histone-lysine N-methyl 99.2 1.6E-11 5.5E-16 86.9 5.2 66 19-85 20-96 (136)
188 2dnr_A Synaptojanin-1; RRM dom 99.2 1.4E-10 5E-15 77.0 8.3 59 16-83 26-84 (91)
189 2adc_A Polypyrimidine tract-bi 99.2 2.5E-11 8.6E-16 90.9 5.0 59 20-83 50-108 (229)
190 3smz_A Protein raver-1, ribonu 99.2 1.1E-10 3.7E-15 89.3 8.6 65 20-85 110-175 (284)
191 3nmr_A Cugbp ELAV-like family 99.2 5.8E-11 2E-15 83.8 6.4 74 2-83 7-86 (175)
192 1qm9_A Polypyrimidine tract-bi 99.1 3E-11 1E-15 87.7 4.9 59 20-83 135-195 (198)
193 1qm9_A Polypyrimidine tract-bi 99.1 1.9E-11 6.4E-16 88.8 3.3 60 20-84 19-78 (198)
194 2dnl_A Cytoplasmic polyadenyla 99.1 5.1E-11 1.7E-15 80.7 5.3 71 2-83 12-86 (114)
195 3sde_A Paraspeckle component 1 99.1 9.1E-11 3.1E-15 89.5 7.0 64 20-84 111-178 (261)
196 2ghp_A U4/U6 snRNA-associated 99.1 7.6E-11 2.6E-15 90.5 6.2 64 20-84 132-196 (292)
197 2adc_A Polypyrimidine tract-bi 99.1 8.1E-11 2.8E-15 88.1 5.9 59 20-83 166-226 (229)
198 1ufw_A Synaptojanin 2; RNP dom 99.1 1.8E-10 6.1E-15 77.1 6.7 60 14-82 33-92 (95)
199 3d2w_A TAR DNA-binding protein 99.1 1.3E-10 4.4E-15 75.8 5.9 56 19-83 25-82 (89)
200 2cjk_A Nuclear polyadenylated 99.1 1.6E-10 5.6E-15 81.2 5.6 73 2-84 7-80 (167)
201 3sde_A Paraspeckle component 1 99.1 1.9E-10 6.6E-15 87.7 6.3 69 2-83 26-94 (261)
202 3tyt_A Heterogeneous nuclear r 99.0 2.9E-10 1E-14 84.6 5.2 55 19-75 137-193 (205)
203 3tht_A Alkylated DNA repair pr 99.0 1.1E-09 3.9E-14 88.0 8.0 60 19-84 34-98 (345)
204 1fje_B Nucleolin RBD12, protei 99.0 4.2E-11 1.4E-15 85.1 -0.7 74 2-84 17-90 (175)
205 1wf0_A TDP-43, TAR DNA-binding 98.9 2.4E-10 8.3E-15 73.6 2.1 55 20-83 20-76 (88)
206 2g4b_A Splicing factor U2AF 65 98.9 1.4E-09 4.9E-14 76.6 5.9 68 2-83 8-86 (172)
207 2yh0_A Splicing factor U2AF 65 98.9 1.6E-09 5.5E-14 78.0 5.5 68 2-83 8-86 (198)
208 1owx_A Lupus LA protein, SS-B, 98.4 1.1E-06 3.8E-11 61.0 6.9 67 19-91 33-105 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.9 2.2E-05 7.6E-10 53.8 6.4 56 21-82 37-97 (117)
210 1wey_A Calcipressin 1; structu 97.6 0.00011 3.6E-09 49.7 5.5 61 17-83 22-82 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.4 0.00039 1.3E-08 48.0 6.7 57 19-82 37-94 (119)
212 3p3d_A Nucleoporin 53; structu 96.8 0.0012 4.2E-08 46.2 4.2 63 19-83 20-97 (132)
213 2i2y_A Fusion protein consists 96.0 0.0024 8.1E-08 44.1 1.6 40 44-84 10-50 (150)
214 2kn4_A Immunoglobulin G-bindin 95.9 0.0074 2.5E-07 41.7 3.9 35 35-70 2-36 (158)
215 1whv_A Poly(A)-specific ribonu 91.0 0.37 1.3E-05 32.0 4.6 41 20-68 30-70 (100)
216 3ctr_A Poly(A)-specific ribonu 90.0 0.31 1.1E-05 32.4 3.6 41 20-68 20-60 (101)
217 1uw4_A UPF3X; nonsense mediate 85.4 5.5 0.00019 25.6 7.8 49 23-72 19-70 (91)
218 3pq1_A Poly(A) RNA polymerase; 80.3 0.96 3.3E-05 37.5 2.7 41 20-65 67-107 (464)
219 3lpe_A Putative transcription 77.3 7.3 0.00025 24.8 5.8 33 33-69 40-72 (92)
220 3h7h_B Transcription elongatio 69.9 4.2 0.00014 26.9 3.3 35 32-70 40-74 (106)
221 2dhx_A Poly (ADP-ribose) polym 65.1 25 0.00087 23.2 6.3 44 31-82 38-81 (104)
222 2l08_A Regulator of nonsense t 60.6 6 0.00021 25.9 2.6 38 46-83 52-94 (97)
223 3p8b_B Transcription antitermi 57.2 9.7 0.00033 26.1 3.4 34 33-70 33-66 (152)
224 1use_A VAsp, vasodilator-stimu 57.1 15 0.00053 20.6 3.5 22 5-26 3-24 (45)
225 2exu_A Transcription initiatio 54.3 8.7 0.0003 28.2 2.8 36 33-72 139-174 (200)
226 3djh_A Macrophage migration in 52.4 6.9 0.00023 25.5 1.8 50 3-72 64-113 (114)
227 3d45_A Poly(A)-specific ribonu 49.1 32 0.0011 28.4 5.8 42 20-69 454-495 (507)
228 3t5s_A Gilaa.00834.A, macropha 48.5 12 0.00041 25.3 2.7 44 3-63 86-129 (135)
229 2g0c_A ATP-dependent RNA helic 48.5 22 0.00075 21.1 3.6 43 32-82 32-74 (76)
230 2e7g_A Putative ribosome-bindi 42.4 74 0.0025 21.2 6.1 55 30-87 43-103 (129)
231 1k4n_A Protein EC4020, protein 39.7 1.1E+02 0.0037 22.3 6.8 67 6-82 12-86 (192)
232 2kzf_A RBFA, ribosome-binding 37.5 44 0.0015 21.5 4.0 35 31-68 36-71 (106)
233 4dh4_A MIF; trimer, isomerase; 36.0 16 0.00055 23.5 1.6 41 3-60 65-105 (114)
234 2dyj_A Ribosome-binding factor 35.7 48 0.0017 21.0 3.9 37 30-69 30-67 (95)
235 4bby_A Alkyldihydroxyacetoneph 33.7 51 0.0018 27.9 4.8 55 28-84 369-423 (658)
236 1jsu_C P27, KIP1, CIP2; comple 31.6 18 0.00063 22.9 1.3 27 5-31 13-39 (84)
237 1jos_A RBFA, ribosome-binding 30.1 77 0.0027 21.1 4.4 53 32-87 36-96 (128)
238 2i9x_A Putative septation prot 28.4 87 0.003 19.8 4.1 25 32-56 5-30 (87)
239 3pm9_A Putative oxidoreductase 25.7 90 0.0031 25.3 4.8 57 28-85 212-268 (476)
240 2ia9_A Putative septation prot 24.7 1.1E+02 0.0036 19.9 4.1 25 32-56 5-30 (100)
241 1nz8_A Transcription antitermi 23.7 47 0.0016 21.6 2.3 24 46-69 61-89 (119)
242 2i9z_A Putative septation prot 22.8 1.2E+02 0.0042 19.8 4.2 25 32-56 5-30 (105)
243 3fwu_A Macrophage migration in 22.7 1.2E+02 0.004 20.1 4.2 38 3-57 86-123 (133)
244 2qyc_A Ferredoxin-like protein 21.6 1.5E+02 0.0052 18.3 4.9 44 15-59 22-68 (103)
245 3kan_A D-dopachrome tautomeras 20.9 30 0.001 22.5 0.8 49 4-72 65-114 (117)
No 1
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.90 E-value=6.8e-24 Score=144.46 Aligned_cols=88 Identities=26% Similarity=0.492 Sum_probs=80.1
Q ss_pred cccCCCHHHHH--HHHHHHHHHHHHHhhhccCCeeEEEEecCCCC---CceeEEEEEecChHHHHHHHHHhCCcEeCCee
Q psy4990 2 IISNVTDEEMQ--EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGD---HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76 (130)
Q Consensus 2 ~~~~~s~~e~~--~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~---~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~ 76 (130)
+.|+++++++. .+|+++++||+++| ++||+|.+|+|+++..+ +++|++||+|++.++|.+|++.|||++|+||+
T Consensus 10 L~Nm~~~~~l~~d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 10 LMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp EESSCCGGGSSSHHHHHHHHHHHHHHH-HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCHHHccChHHHHHHHHHHHHHH-HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 57899999874 58999999999999 79999999999987543 57899999999999999999999999999999
Q ss_pred EEEEeccCcchhhh
Q psy4990 77 VYAELSPVTDFREA 90 (130)
Q Consensus 77 I~v~~~~~~~~~~~ 90 (130)
|+|.|++.++|...
T Consensus 89 i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 89 VVTKYCDPDSYHRR 102 (105)
T ss_dssp CEEEEECHHHHHTT
T ss_pred EEEEEeCHHHHhhc
Confidence 99999999998764
No 2
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.87 E-value=1.2e-22 Score=140.54 Aligned_cols=88 Identities=27% Similarity=0.423 Sum_probs=79.1
Q ss_pred cccCCCHHHH--HHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~--~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+.|+|+++++ ++.|++|++||+++| ++||.|.+|.|+++. ++|++||+|.+.++|.+|++.|||++|+||+|.|
T Consensus 12 L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v 87 (114)
T 3s6e_A 12 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 87 (114)
T ss_dssp EESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 5689999875 347899999999999 799999999998763 5899999999999999999999999999999999
Q ss_pred EeccCcchhhhhcc
Q psy4990 80 ELSPVTDFREACCR 93 (130)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (130)
.|++.+.|......
T Consensus 88 ~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 88 AYVPLPTYHNLFPD 101 (114)
T ss_dssp EEECHHHHHHHCGG
T ss_pred EEEcHHHHHHhCcc
Confidence 99999999876433
No 3
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.87 E-value=7.8e-23 Score=142.25 Aligned_cols=85 Identities=24% Similarity=0.553 Sum_probs=75.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-----CCceeEEEEEecChHHHHHHHHHhCCcEeCCee
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 76 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~ 76 (130)
+.|+|+++|+++ ++++||+++| ++||+|.+|+|+++.. ++++|++||+|.+.++|.+|++.|||++|+||+
T Consensus 25 L~Nm~~~~el~d---dleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 25 LRNMVDPKDIDD---DLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp EESCSCGGGCCT---THHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCHHHHHH---HHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 578999987654 6789999999 7999999999997632 457899999999999999999999999999999
Q ss_pred EEEEeccCcchhhh
Q psy4990 77 VYAELSPVTDFREA 90 (130)
Q Consensus 77 I~v~~~~~~~~~~~ 90 (130)
|.|.|++.++|...
T Consensus 101 i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 101 VVAEVYDQERFDNS 114 (118)
T ss_dssp CEEEEECHHHHHTT
T ss_pred EEEEEcChHhcccc
Confidence 99999999998764
No 4
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.85 E-value=2.8e-21 Score=131.16 Aligned_cols=77 Identities=83% Similarity=1.372 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHh-hhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 6 VTDEEMQEHYDNFFEDVFVEC-EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 6 ~s~~e~~~~~~~~~eDi~~e~-~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+++++++++|+++++||+++| . +||+|.+|.|+++..++++|++||+|.+.++|.+|++.|||++|+||+|.|.|+|
T Consensus 27 ~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 27 VSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 356788899999999999999 7 9999999999988767889999999999999999999999999999999999975
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.85 E-value=1.7e-21 Score=132.63 Aligned_cols=86 Identities=31% Similarity=0.486 Sum_probs=74.4
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC--CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~--~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+.|+++++++. +++++||+++| ++||+|.+|+|+++. +++++|++||+|.+.++|.+|++.|||++|+||+|.|
T Consensus 13 l~Nm~~~~~l~---dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 13 LRNMVGAGEVD---EDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp EESSSCSCCC------CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EEcCCChHHhh---HHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 46778887664 35789999999 799999999999764 2578999999999999999999999999999999999
Q ss_pred EeccCcchhhhh
Q psy4990 80 ELSPVTDFREAC 91 (130)
Q Consensus 80 ~~~~~~~~~~~~ 91 (130)
.|++.++|....
T Consensus 89 ~~a~~~~f~~~~ 100 (105)
T 2pe8_A 89 CFYNLDKFRVLD 100 (105)
T ss_dssp EECCHHHHHTTC
T ss_pred EEcCHHHhhhhh
Confidence 999998887764
No 6
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=115.17 Aligned_cols=83 Identities=31% Similarity=0.598 Sum_probs=71.5
Q ss_pred cccCCCHHHHH---HHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 2 IISNVTDEEMQ---EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 2 ~~~~~s~~e~~---~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
+.|++++.++. +.|+++++||+++| ++||.|.+|.|+.+ +++|++||+|.+.++|.+|++.|||++|+||+|.
T Consensus 20 l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 95 (112)
T 2dit_A 20 IKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 95 (112)
T ss_dssp EESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECE
T ss_pred EEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 45777887764 46899999999999 79999999988543 4789999999999999999999999999999999
Q ss_pred EEecc-Ccchh
Q psy4990 79 AELSP-VTDFR 88 (130)
Q Consensus 79 v~~~~-~~~~~ 88 (130)
|.++. ..+|.
T Consensus 96 v~~a~~~~~~~ 106 (112)
T 2dit_A 96 AQAWDGTTDYQ 106 (112)
T ss_dssp EEECCSCCCSS
T ss_pred EEEeCCCCCcc
Confidence 99984 35553
No 7
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.74 E-value=1.9e-18 Score=129.45 Aligned_cols=84 Identities=24% Similarity=0.549 Sum_probs=73.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
.++++++++++ ++.+|++++| ++||+|.+|.|+++.. ++++|++||+|.+.++|.+|++.||||+|+||+|
T Consensus 130 ~n~v~~~e~~~---e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 130 RNMVDPKDIDD---DLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp ESSCCGGGCCT---THHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred hcCCCHHHHHH---HHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 46778877665 4568999999 7999999999986533 3789999999999999999999999999999999
Q ss_pred EEEeccCcchhhh
Q psy4990 78 YAELSPVTDFREA 90 (130)
Q Consensus 78 ~v~~~~~~~~~~~ 90 (130)
.|.|++.++|+..
T Consensus 206 ~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 206 VAEVYDQERFDNS 218 (222)
T ss_dssp EEEECCHHHHHTT
T ss_pred EEEEcCHHHhhhc
Confidence 9999999998765
No 8
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=106.85 Aligned_cols=83 Identities=12% Similarity=0.215 Sum_probs=68.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCe-eEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr-~I~v~ 80 (130)
||.++.. .+++.++..+++|++.| ++||.|.+|.|+ ..++.++|++||+|.+.++|.+|+..|||..++|| +|.|.
T Consensus 19 ~V~nLp~-~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~ 95 (105)
T 2nlw_A 19 VVDNVPQ-VGPDRLEKLKNVIHKIF-SKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 95 (105)
T ss_dssp EEESCCC-CCTTTTTHHHHHHHHHH-GGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEE
T ss_pred EEeCCCc-chhhhhHHHHHHHHHHH-hcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEE
Confidence 4555554 33333445778999999 799999999999 44578899999999999999999999999999999 99999
Q ss_pred ec-cCcch
Q psy4990 81 LS-PVTDF 87 (130)
Q Consensus 81 ~~-~~~~~ 87 (130)
++ +.++|
T Consensus 96 ~a~~~~k~ 103 (105)
T 2nlw_A 96 LFTDFDKY 103 (105)
T ss_dssp CSCCCCCC
T ss_pred EcchHhhh
Confidence 98 44444
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=102.94 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=64.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++++.-. .+||++.| ++||.|.+|.|+.+.. +.++|++||+|.+.++|.+|++.|||..++||.|.|.
T Consensus 10 fV~nL~~~~t-------e~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 10 TFARLNDNVR-------ETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp EEESCCTTCC-------HHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEECCCCCCC-------HHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4556655322 25889999 7999999999987654 7899999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
+++.
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 9854
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=101.62 Aligned_cols=73 Identities=18% Similarity=0.353 Sum_probs=63.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||.++.+.-. .+||++.| ++||+|.+|.|+++. ++.++|++||+|.+.++|.+|++.|||..++||+|.|.
T Consensus 23 fV~nLp~~~t-------e~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 23 IVNYLPQNMT-------QDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 5566655332 25889999 799999999998764 47889999999999999999999999999999999999
Q ss_pred ec
Q psy4990 81 LS 82 (130)
Q Consensus 81 ~~ 82 (130)
++
T Consensus 95 ~A 96 (99)
T 4fxv_A 95 YA 96 (99)
T ss_dssp EC
T ss_pred Ee
Confidence 87
No 11
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=102.31 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=63.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCe-eEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr-~I~v 79 (130)
+|.+++. .+.+.++..++||++.| ++||.|.+|.|++ .++.++|++||+|.+.++|.+|++.|||..++|| +|+|
T Consensus 5 ~V~nLp~-~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 5 VVDNVPQ-VGPDRLEKLKNVIHKIF-SKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEESCCC-CCTTTHHHHHHHHHHHH-HTTCCEEEEECCC-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEeCCCC-CcHHHHHHHHHHHHHHH-hhcCCeEEEEecC-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4556643 33444566789999999 7999999999984 4578899999999999999999999999999999 8876
No 12
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=7.3e-16 Score=102.80 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCC-eeEEEEec-cCcch
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-RPVYAELS-PVTDF 87 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G-r~I~v~~~-~~~~~ 87 (130)
++...++|++.| ++||.|.+|.|+.+.. +.++|++||+|.+.++|.+|++.|||..++| |+|.|.++ +..+|
T Consensus 22 ~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 22 VPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVERY 96 (100)
T ss_dssp HHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhhhh
Confidence 355668999999 7999999999987654 7889999999999999999999999999999 99999998 44444
No 13
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.1e-15 Score=101.56 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=62.9
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+++.|+++.-.+ ++|++.| .+||+|.++++.. ++|++||+|.+.++|.+|++.|||..+.||+|.|.
T Consensus 10 L~VgNL~~~~te-------~~L~~lF-~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 10 LLLKNLTAQIDG-------PTLRTLC-MQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp EEEECCCTTCCC-------HHHHHHH-HHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEEeCCCccCCH-------HHHHHHH-HhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 356677775333 5899999 6999999999976 38999999999999999999999999999999999
Q ss_pred eccCcc
Q psy4990 81 LSPVTD 86 (130)
Q Consensus 81 ~~~~~~ 86 (130)
++.+..
T Consensus 77 ~A~e~~ 82 (89)
T 2wbr_A 77 SPSENE 82 (89)
T ss_dssp CCCHHH
T ss_pred ECCHHH
Confidence 996544
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=96.42 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=58.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+..+.++|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 31 ~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 31 EILYELF-LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHH-HhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 5789999 79999999999987767889999999999999999999999999999999999863
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.57 E-value=1.3e-14 Score=92.56 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=63.4
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
++.++++.-. .+||++.| ++||.|.+|.++.+ .++.++|++||+|.+.++|.+|+..|||..++|++|.|.
T Consensus 5 ~V~nlp~~~t-------~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 5 FVGDLNVNVD-------DETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEECCCTTCC-------HHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4556655422 25889999 79999999999876 457889999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 77 ~a~ 79 (83)
T 3md1_A 77 WAA 79 (83)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=93.33 Aligned_cols=63 Identities=21% Similarity=0.500 Sum_probs=58.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 21 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 21 AAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5899999 799999999998763 57889999999999999999999999999999999999874
No 17
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=1.4e-14 Score=96.69 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=58.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 44 ~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 44 ADIQELF-AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHH-HTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHH-HhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5789999 69999999999987778889999999999999999999999999999999999874
No 18
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=7e-15 Score=94.16 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=56.9
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.++.+ .++..+|++||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 22 ~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 22 KVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHHHHHH-GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHH-hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5889999 79999999999865 45678999999999999999999999999999999999885
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=95.43 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=59.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 32 ~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 32 EELEEIC-KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp HHHHHHH-TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred HHHHHHH-HhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5789999 79999999999987777889999999999999999999999999999999999984
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.55 E-value=1e-14 Score=99.44 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=63.0
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+||.++++.-. .+||++.| ++||.|.+|+|+.+. +.++|++||+|.+.++|.+|++.|||..++||.|.|.
T Consensus 8 lfV~nLp~~~t-------e~~L~~~F-~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 8 IFIKNLDKSID-------NKALYDTF-SAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp EEEESCCTTCC-------HHHHHHHH-GGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEECCCCCCCC-------HHHHHHHH-hccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35666665422 25899999 799999999998764 3478999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 79 ~a~ 81 (115)
T 4f25_A 79 RFK 81 (115)
T ss_dssp ESS
T ss_pred ECC
Confidence 874
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=95.40 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=63.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++++.-. .+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 12 ~V~nlp~~~t-------~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 12 FVRNLSYTSS-------EEDLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp EEECCCTTCC-------HHHHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4555655422 24889999 799999999998765 57789999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
++..
T Consensus 84 ~a~~ 87 (99)
T 1whw_A 84 PSTI 87 (99)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9844
No 22
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=96.19 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 30 ~~l~~~f-~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 30 KKLKEVF-SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HHHHHHH-TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHH-HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 5889999 799999999999877788899999999999999999999999999999999999843
No 23
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=93.08 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=57.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 30 ~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 30 RDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred HHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 4789999 699999999998764 36789999999999999999999999999999999999874
No 24
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=94.02 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=56.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.|+.+.. +.++|++||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 31 ~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 31 NDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp HHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred HHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5899999 7999999999987643 678899999999999999999999999999999999885
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=6.5e-14 Score=94.69 Aligned_cols=64 Identities=23% Similarity=0.521 Sum_probs=58.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 30 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred HHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 5899999 799999999998764 578899999999999999999999999999999999999843
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=95.73 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=63.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
||.++++.-. .+||++.| ++||.|.+|.|+.+ ++..+|++||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 19 ~V~nlp~~~t-------~~~l~~~F-~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 19 YVKNLDDGID-------DERLRKAF-SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp EEECCCTTCC-------HHHHHHTT-TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4555555322 25889999 79999999999987 678899999999999999999999999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 843
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=98.30 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=64.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+|.+++..-. .+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 11 ~V~nLp~~~t-------~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 11 FIGGLNRETN-------EKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp EEECCTTTCC-------HHHHHHHH-HTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4555655322 35889999 699999999999877778899999999999999999999999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
+..
T Consensus 83 a~~ 85 (116)
T 2fy1_A 83 AKK 85 (116)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=3.1e-14 Score=93.55 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=59.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++...
T Consensus 17 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 17 EQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp HHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 5889999 799999999998764 4678999999999999999999999999999999999998543
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=94.98 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=58.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 30 ~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 30 TDLQELF-RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp HHHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred HHHHHHH-HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 5889999 799999999998763 578899999999999999999999999999999999999843
No 30
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=100.78 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=64.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
||.++++.-.+ +++.+.|++.| ++||.|.+|.+... +.++|++||+|.+.++|.+|++.|||..+.||+|.|.|
T Consensus 33 fV~nL~~~~~e---~~L~~~L~~~F-~~~G~I~~v~i~~~--~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 33 LITNINPEVPK---EKLQALLYALA-SSQGDILDIVVDLS--DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp EEESCCTTSCH---HHHHHHHHHHH-HHHSCEEEEEECCC--CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred EEeCCCCCCCH---HHHHHHHHHHh-ccCCCeEEEEeccC--CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 56666653222 34556788999 79999999988753 56799999999999999999999999999999999999
Q ss_pred ccCcc
Q psy4990 82 SPVTD 86 (130)
Q Consensus 82 ~~~~~ 86 (130)
+....
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 85433
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=8.4e-15 Score=97.67 Aligned_cols=75 Identities=11% Similarity=0.313 Sum_probs=63.2
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCC--eeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCc----EeC
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGE--IEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNR----WFG 73 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~--I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr----~f~ 73 (130)
+||.++++.-.+ +||++.| ++||. |.+|+|+++. ++.++|++||+|.+.++|.+|++.|||. .++
T Consensus 12 lfV~nL~~~~te-------e~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 12 IILRNIAPHTVV-------DSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp EEEESCCTTCCH-------HHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred EEEeCCCCcCCH-------HHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 366777775444 4899999 79995 6799998764 4788999999999999999999999997 599
Q ss_pred CeeEEEEecc
Q psy4990 74 GRPVYAELSP 83 (130)
Q Consensus 74 Gr~I~v~~~~ 83 (130)
||+|.|+|+.
T Consensus 84 Gr~i~V~~Ak 93 (95)
T 2lkz_A 84 GKTIGVDFAK 93 (95)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEEcc
Confidence 9999999973
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=93.29 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=58.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 20 ~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 20 DMLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp HHHHHHH-TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred HHHHHHH-HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5889999 799999999998764 46789999999999999999999999999999999999984
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=3.4e-14 Score=94.52 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=59.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC---eeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG---RPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G---r~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..+.| ++|.|.++..
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 30 EDVLRLF-QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp HHHHHHH-TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred HHHHHHH-HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 5889999 79999999999987777889999999999999999999999999998 9999999843
No 34
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.51 E-value=9.9e-15 Score=95.18 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=62.6
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccC--CeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG--~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
++|.+++..-. .+||++.| ++|| .|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++||.|
T Consensus 4 l~V~nL~~~~t-------~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 4 LYIGNLTWWTT-------DEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp CEEESCCTTCC-------HHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred EEEeCCCCCCC-------HHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 35666665432 35889999 7999 99999998764 57889999999999999999999999999999999
Q ss_pred EEEecc
Q psy4990 78 YAELSP 83 (130)
Q Consensus 78 ~v~~~~ 83 (130)
.|.++.
T Consensus 76 ~V~~~~ 81 (90)
T 3p5t_L 76 VVTPSN 81 (90)
T ss_dssp EECCC-
T ss_pred EEEECC
Confidence 999874
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=94.41 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=63.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEE-EEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEM-NVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v-~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
+|.++++.-. .+||++.| ++||.|.+| .|+.+ .++.++|++||+|.+.++|.+|+..|||..++|++|.|
T Consensus 9 ~V~nLp~~~t-------~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 9 FIGNLDPEID-------EKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp EEECCCTTCC-------HHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4555655422 35899999 699999999 99876 45778999999999999999999999999999999999
Q ss_pred EeccC
Q psy4990 80 ELSPV 84 (130)
Q Consensus 80 ~~~~~ 84 (130)
.++..
T Consensus 81 ~~a~~ 85 (96)
T 1x5t_A 81 SYAFK 85 (96)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 99843
No 36
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=93.62 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=61.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+|.+++..-.++ ++.+.|++.| ++||.|.+|.|+.+... +|++||+|.+.++|.+|++.|||..++||.|.|.+
T Consensus 13 ~V~nL~~~~~~~---~l~~~l~~~F-~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 13 QVSNIDYRLSRK---ELQQLLQEAF-ARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp EEESCCTTSCHH---HHHHHHHHHH-HHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred EEECCCCCCCHH---HHHHHHHHhc-cccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 455665543333 2333455999 69999999999977544 89999999999999999999999999999999999
Q ss_pred cc
Q psy4990 82 SP 83 (130)
Q Consensus 82 ~~ 83 (130)
+.
T Consensus 87 a~ 88 (96)
T 2dgx_A 87 AT 88 (96)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 37
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=3.5e-14 Score=96.14 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=58.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 40 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 40 QDLLQMF-MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp HHHHHHH-GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 5899999 799999999998765 57889999999999999999999999999999999999984
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.2e-14 Score=93.09 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=57.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.. ..+|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 30 ~~l~~~f-~~~G~v~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 30 PDLRQMF-GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp HHHHHHG-GGTSCEEEEEEECCTT-TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred HHHHHHH-HhcCCeEEEEEEecCC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 5789999 7999999999998754 3789999999999999999999999999999999999843
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.6e-14 Score=95.07 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=58.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 30 PLLWELF-LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp HHHHHHH-HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred HHHHHHH-HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5789999 699999999998865 57889999999999999999999999999999999999984
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.1e-14 Score=93.13 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=57.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.. ..+|++||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 30 VLILQLF-SQIGPCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHHHHH-HHHSCEEEEEEECCCC-SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHH-HhcCCEeEEEEEecCC-CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 5889999 7999999999998753 3689999999999999999999999999999999999843
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=94.87 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=58.3
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+ .++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 27 ~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 27 KVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp HHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 5889999 79999999999876 4467899999999999999999999999999999999999843
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.1e-14 Score=94.31 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=58.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCC--CCCceeEEEEEecChHHHHHHHHHh-CCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~--~~~~~G~~fV~F~~~~~A~~Ai~~l-nGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..| ||..+.|+.|.|.++..
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 30 REIRELF-STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp HHHHHHH-HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred HHHHHHH-HccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 5889999 799999999998763 5778999999999999999999999 99999999999999843
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=93.81 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=57.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 38 ~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 38 EDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 5789999 799999999998764 47789999999999999999999999999999999999973
No 44
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=96.45 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=62.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
||.+++++-. .+||++.| ++||+|.+|.|+.+..+.++|++||+|.+.++|.+|+. +||..|+|+.|.|.+
T Consensus 15 fV~~Lp~~~t-------e~~L~~~F-~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 15 YIKGFPTDAT-------LDDIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp EEECCCTTCC-------HHHHHHHH-HTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred EEECCCCCCC-------HHHHHHHH-hhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 4556665433 35889999 79999999999987667889999999999999999999 999999999999987
Q ss_pred cc
Q psy4990 82 SP 83 (130)
Q Consensus 82 ~~ 83 (130)
..
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 63
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=92.99 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=62.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
+|.++++.-. .+||++.| ++||.|.+|.|+.+.. +..+|++||+|.+.++|.+|+..|||..++|+.|
T Consensus 9 ~V~nLp~~~t-------~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 9 FIKNLNFSTT-------EETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 4556655422 25889999 6999999999986532 3678999999999999999999999999999999
Q ss_pred EEEeccC
Q psy4990 78 YAELSPV 84 (130)
Q Consensus 78 ~v~~~~~ 84 (130)
.|.++..
T Consensus 81 ~V~~a~~ 87 (98)
T 2cpf_A 81 EVRISER 87 (98)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999843
No 46
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.49 E-value=4.3e-14 Score=97.01 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=59.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 50 ~~l~~~F-~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 50 ADIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp HHHHHHH-HTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred HHHHHHH-HhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 5789999 799999999999877778899999999999999999999999999999999999843
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=94.62 Aligned_cols=64 Identities=16% Similarity=0.332 Sum_probs=58.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 28 ~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 28 DSLRRVF-EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp HHHHHHH-TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred HHHHHHH-HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 5889999 799999999998764 367899999999999999999999999999999999999843
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.49 E-value=7.8e-14 Score=89.93 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=57.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|+ .|||..++|+.|.|.++.
T Consensus 21 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 21 EELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred HHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 5789999 799999999998764 5778999999999999999999 999999999999999874
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=93.35 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=57.2
Q ss_pred HHHHHHhhhccCCeeE--------EEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEE--------MNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~--------v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+ |.|+.+ .++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 28 ~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 28 ESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHH-TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHH-HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 5889999 79999999 999876 45788999999999999999999999999999999999886
No 50
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=96.48 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=56.0
Q ss_pred HHHH---HHhhhccCCeeEEEEecCCC----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVF---VECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~---~e~~~kfG~I~~v~i~~~~~----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||+ +.| ++||+|.+|.|+.+.. ..++|++||+|.+.++|.+|++.|||..++||+|.|.++.
T Consensus 30 ~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 30 PEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp HHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred HHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 4677 899 7999999999987642 2567999999999999999999999999999999999984
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=5.3e-14 Score=91.37 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=57.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|..|.|+.+ ++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 23 ~~l~~~f-~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 23 KMLKDKF-NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp HHHHHHH-HTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred HHHHHHH-HhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5889999 79999999999874 46789999999999999999999999999999999999974
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.1e-14 Score=94.30 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=62.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++.+.-. .+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 16 ~v~nLp~~~t-------~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 16 FVGGLSFDTN-------EQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred EEECCCCCCC-------HHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4555655322 35789999 699999999998764 46789999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 88 ~a~ 90 (102)
T 1x5s_A 88 QAG 90 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 984
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=95.66 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=55.9
Q ss_pred HHHHHHhhhccC-CeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhC-CcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLN-NRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~ln-Gr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++|| .|.+|+|+++. ++.++|++||+|.+.++|.+|++.|+ +..++||+|.|.|+.
T Consensus 16 ~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 16 DDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp HHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred HHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999 6999 89999998764 47889999999999999999999874 667999999999983
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=90.69 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=56.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCC-CC-ceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLG-DH-LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~-~~-~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+.. +. .+|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 19 ~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 19 DHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp HHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5889999 7999999999987643 22 78999999999999999999999999999999999984
No 55
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=8.5e-14 Score=93.43 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=57.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 41 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 41 DEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp HHHHHHH-GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 5789999 799999999998763 57789999999999999999999999999999999999973
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-14 Score=93.95 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=58.4
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+ .++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 23 ~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 23 EQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred HHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 5889999 79999999999866 3577899999999999999999999999999999999999844
No 57
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-14 Score=93.99 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhc-cCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcE-eCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDK-YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW-FGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~k-fG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~-f~Gr~I~v 79 (130)
+|.++++.-. .+||++.| ++ ||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||.. ++|+.|.|
T Consensus 13 ~V~nLp~~~t-------~~~l~~~F-~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 13 FVGDLTPDVD-------DGMLYEFF-VKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp EEECCCTTCC-------HHHHHHHH-HHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred EEeCCCCCCC-------HHHHHHHH-HHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4555655422 25889999 69 999999999987777899999999999999999999999999 99999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
.++.
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 9874
No 58
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-14 Score=96.30 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=62.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+|.++.+.- ..+||++.| ++||.|.+|.|+. .+|++||+|.+.++|.+|++.|||..|+|++|.|.|
T Consensus 14 ~V~nLp~~~-------te~~L~~~F-~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 14 LAKNLPAGT-------LAAEIQETF-SRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEESCCTTC-------CHHHHHHHH-HTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred EEeCCCCCC-------CHHHHHHHH-HhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 556665532 235899999 7999999999885 368999999999999999999999999999999999
Q ss_pred ccCcch
Q psy4990 82 SPVTDF 87 (130)
Q Consensus 82 ~~~~~~ 87 (130)
+....|
T Consensus 81 a~~~~~ 86 (111)
T 1whx_A 81 APIGVF 86 (111)
T ss_dssp EETTTT
T ss_pred CCCCcc
Confidence 976555
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=5.8e-14 Score=94.91 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=57.8
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+ .++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 41 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 41 DMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp HHHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred HHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 5889999 79999999999875 446789999999999999999999999999999999999874
No 60
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=92.82 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=55.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|..+ ...+|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 37 ~~l~~~F-~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 37 KDIEDVF-YKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp HHHHHHH-GGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 5889999 79999999999764 3578999999999999999999999999999999999974
No 61
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.47 E-value=2.2e-14 Score=90.03 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=55.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|+. |||..++|++|.|.++
T Consensus 14 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 14 EDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5789999 799999999998765 57789999999999999999998 9999999999999763
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.47 E-value=8.3e-14 Score=96.60 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=61.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++++.-. .+||++.| ++||.|.+|.|+.+ .++..+|++||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 67 ~v~nlp~~~~-------~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 67 YVGGLAEEVD-------DKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp EEECCCTTCC-------HHHHHHHH-GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred EEEeCCCCCC-------HHHHHHHH-HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4555655322 25899999 79999999999876 456789999999999999999999999999999999998
Q ss_pred ec
Q psy4990 81 LS 82 (130)
Q Consensus 81 ~~ 82 (130)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 74
No 63
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=6.1e-14 Score=95.24 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|+.|+|.+.
T Consensus 55 ~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 55 TDLASTF-LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHHT-TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHH-HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5889999 799999999998763 4678999999999999999999999999999999999875
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=91.08 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=62.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCee-EEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCee---
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIE-EMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP--- 76 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~-~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~--- 76 (130)
+|.++.+.-. .+||++.| ++||.|. +|.|+.+. ++.++|++||+|.+.++|.+|++.|||..+.|+.
T Consensus 13 ~V~nLp~~~t-------~~~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 13 WMGDLEPYMD-------ENFISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp EECSCCTTCC-------HHHHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 4556655422 25889999 6999999 99998764 5788999999999999999999999999999999
Q ss_pred -EEEEecc
Q psy4990 77 -VYAELSP 83 (130)
Q Consensus 77 -I~v~~~~ 83 (130)
|.+.++.
T Consensus 85 ~l~v~~a~ 92 (99)
T 2div_A 85 RFKLNYAT 92 (99)
T ss_dssp ECCEEETT
T ss_pred eEEEeecC
Confidence 9999874
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.46 E-value=8.6e-14 Score=95.49 Aligned_cols=74 Identities=22% Similarity=0.391 Sum_probs=63.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||.++++.-. .+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 26 ~V~nlp~~~t-------~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 26 FVTGVHEEAT-------EEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4556654322 35889999 699999999998764 57789999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 983
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=92.99 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=57.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCC-CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~-~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.. +..+|++||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 40 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 40 RDLEDFF-SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHHHHHH-TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred HHHHHHH-HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 5889999 7999999999987643 678999999999999999999 9999999999999999843
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=93.38 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=57.7
Q ss_pred HHHHHHhhhccCCee--------EEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIE--------EMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~--------~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|. .|.|+.+ .++..+|++||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 30 DDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp HHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred HHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 5889999 7999999 6999876 457889999999999999999999999999999999999984
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=95.85 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=58.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 57 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 57 VQLRQLF-ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp HHHHHHH-HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred HHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5889999 799999999998754 467899999999999999999999999999999999999854
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=90.71 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=56.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+. |||..++|+.|.|.++.
T Consensus 25 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 25 TELREYF-KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp HHHHHHH-SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred HHHHHHH-HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 5789999 799999999998764 46789999999999999999998 99999999999999984
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=88.83 Aligned_cols=62 Identities=18% Similarity=0.330 Sum_probs=57.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++| .|.+|.|+.+.++.++|++||+|.+.++|.+|++ |||..++||.|.|.++..
T Consensus 25 ~~l~~~F-~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 25 KNVMEFL-APL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp HHHHHHH-TTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred HHHHHHH-hhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 5899999 799 9999999988778889999999999999999999 999999999999998843
No 71
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.7e-14 Score=93.95 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=56.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+.. ..+|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 44 ~~l~~~F-~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 44 PDLRQMF-GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp HHHHHHG-GGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHH-HhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5889999 7999999999987643 478999999999999999999999999999999999974
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=1.2e-13 Score=96.40 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=63.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++.+.-. .+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 50 ~V~nLp~~~t-------e~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 50 GVFGLSLYTT-------ERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CEETCTTSCC-------HHHHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4555655422 24889999 799999999998764 46789999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
++..
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 8743
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.9e-13 Score=91.62 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=57.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhC------CcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLN------NRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~ln------Gr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|| |..++|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 30 EALGEVL-QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp HHHHHHH-HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 5889999 699999999998764 46789999999999999999999999 999999999999984
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=98.06 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccC--CeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYG--EIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG--~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++|| .|.+|.|+.+ .++.++|++||+|.+.++|.+|+..|||..++||.|.|.++..
T Consensus 69 e~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 69 DQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred HHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 35899999 7999 9999999876 4578899999999999999999999999999999999999843
No 75
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=1.3e-13 Score=97.80 Aligned_cols=74 Identities=18% Similarity=0.363 Sum_probs=63.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||.++++.-. .+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.
T Consensus 74 ~v~nl~~~~~-------~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 74 KVDNLTYRTS-------PDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4555555432 35889999 799999999998764 57889999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 146 ~a~ 148 (158)
T 2kn4_A 146 MAR 148 (158)
T ss_dssp EEC
T ss_pred ECC
Confidence 984
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.44 E-value=1.1e-13 Score=92.17 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=57.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEe---CCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f---~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..+ .|+.|.|.++..
T Consensus 28 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 28 KDLKPLF-EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp HHHHHHH-HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred HHHHHHH-HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 5899999 699999999998764 367899999999999999999999999998 999999999843
No 77
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=94.58 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=62.1
Q ss_pred HHHHHHHhhhccCC---eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhh
Q psy4990 19 FEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90 (130)
Q Consensus 19 ~eDi~~e~~~kfG~---I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~ 90 (130)
.+||++.| ++||. |.+|+|+.+..++++|++||+|.+.++|.+|+. |||..++||.|.|.++....+...
T Consensus 31 e~~l~~~F-~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~~ 103 (118)
T 2db1_A 31 IEDVQNFL-SDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDWV 103 (118)
T ss_dssp HHHHHHHT-TTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHH-HHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHHH
Confidence 36899999 79999 899999987668899999999999999999999 999999999999999866555444
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=6e-14 Score=91.63 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.++.++.+ .++..+|++||+|.+.++|.+|++.|||..++||.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 30 DEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 5889999 69999998877653 446789999999999999999999999999999999999864
No 79
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=92.35 Aligned_cols=63 Identities=11% Similarity=0.288 Sum_probs=57.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe--------CCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--------GGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f--------~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|+..|||..+ .+++|.|.|+.
T Consensus 40 ~~l~~~F-~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 40 QELENML-KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHHTT-TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHH-HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 5789999 799999999999877778899999999999999999999999999 68889999874
No 80
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.44 E-value=3.8e-13 Score=95.57 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 53 ~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 53 EEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred HHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 35899999 799999999998764 467899999999999999999999999999999999999853
No 81
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.7e-13 Score=91.86 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=56.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..||+ .|+|+.|.|.++.
T Consensus 32 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 32 ASLRKYF-EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp HHHHHHH-HTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred HHHHHHH-HhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 5889999 699999999998764 467899999999999999999999999 8999999999984
No 82
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.7e-13 Score=94.27 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=58.1
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.++.++.+ .++.++|++||+|.+.++|.+|++.|||..++|++|.|.|+.
T Consensus 102 ~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 102 ETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 5899999 79999999999876 457889999999999999999999999999999999999874
No 83
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.44 E-value=1.1e-13 Score=90.76 Aligned_cols=77 Identities=14% Similarity=0.331 Sum_probs=61.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+|.++++.-.++ ++.+.|++.| ++||.|.+|.+++. +.++|++||+|.+.++|.+|++.|||..++|++|.|.+
T Consensus 12 ~V~nLp~~~~~~---~l~~~l~~~f-~~~G~i~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 12 YINNLNEKIKKD---ELKKSLHAIF-SRFGQILDILVSRS--LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp EEESCCTTSCHH---HHHHHHHHHH-GGGSCEEEEECCHH--HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEeCCCCCCCHH---HHHHHHHHHH-HhCCCEEEEEEEcC--CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 455665533332 3444556999 79999999999852 45689999999999999999999999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
+..
T Consensus 86 a~~ 88 (97)
T 1nu4_A 86 AKT 88 (97)
T ss_dssp CSS
T ss_pred ccC
Confidence 844
No 84
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=91.21 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=56.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCC--CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~--~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++|| |.+|.|+.+.. +..+|++||+|.+.++|.+|+ .|||..++|+.|.|.++..
T Consensus 30 ~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 30 ESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp HHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred HHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 5889999 7999 99999987653 678999999999999999999 9999999999999999843
No 85
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=3e-13 Score=95.75 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=58.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 108 ~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 108 DDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 36899999 799999999998874 6788999999999999999999999999999999999986
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=3.5e-13 Score=96.93 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=63.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||.++++.-. .++|++.| ++||.|..|.|+.+ .++.++|++||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 76 ~V~nLp~~~t-------~~~L~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 76 FVTSIHEEAQ-------EDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp EEESCCTTCC-------HHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEeCCCCCCC-------HHHHHHHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 5566655322 35889999 79999999999876 457889999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 973
No 87
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=90.28 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=62.8
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
++|.++++.-. .+||++.| ++||.|.+|.|+.+ .++..+|++||+|.+.++|.+|+.. ||..++|+.|.|
T Consensus 19 l~V~nlp~~~t-------~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 19 LFVGGLDWSTT-------QETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp ECCBSCCTTCC-------HHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred EEEeCCCCCCC-------HHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 35666665433 35889999 69999999999876 3577899999999999999999999 999999999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
.++.
T Consensus 90 ~~a~ 93 (105)
T 2dh8_A 90 KPCT 93 (105)
T ss_dssp CCSC
T ss_pred EEcc
Confidence 8873
No 88
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=93.79 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=61.0
Q ss_pred HHHHHHhhhccCCe-eEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhh
Q psy4990 20 EDVFVECEDKYGEI-EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90 (130)
Q Consensus 20 eDi~~e~~~kfG~I-~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~ 90 (130)
+||++.| ++||.| .+|.|+.+.++..+|++||+|.+.++|.+|+.. ||..++||.|.|.++........
T Consensus 30 ~~l~~~F-~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~ 99 (114)
T 2cpy_A 30 MDVLQFL-EGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMREI 99 (114)
T ss_dssp HHHHHHT-TTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHH-HhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHHH
Confidence 5899999 799999 899998877788999999999999999999987 99999999999999965554443
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=93.73 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=59.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC--CcEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln--Gr~f~Gr~I~v 79 (130)
||.++++.-. ++||++.| ++||.|.+|.|+++ +|++||+|++.++|.+|+..|+ |..++||+|.|
T Consensus 20 fV~nLp~~vt-------e~dL~~lF-~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 20 HIRKLPIDVT-------EGEVISLG-LPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp EECSCCTTSC-------HHHHHHHH-HHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 5666665422 25889999 69999999999874 7999999999999999999886 47999999999
Q ss_pred EeccC
Q psy4990 80 ELSPV 84 (130)
Q Consensus 80 ~~~~~ 84 (130)
.++..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 99843
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.42 E-value=5.3e-13 Score=85.88 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|++ ++|..++|+.|.|.++
T Consensus 26 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 26 KDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 5889999 799999999998764 47889999999999999999996 5889999999999764
No 91
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-13 Score=93.25 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=58.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc--EeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr--~f~Gr~I~v 79 (130)
+|.++++.++.+ +||++.| ++||.|.+|.|+++ +|++||+|++.++|.+|++.|||. .+.||+|.|
T Consensus 19 ~V~nLp~~~~te------~dL~~lF-~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 19 HIMDFQRGKNLR------YQLLQLV-EPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp EEESCCCSSSHH------HHHHTTT-GGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred EEeCCCCCcCCH------HHHHHHH-HhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 556666522333 5899999 69999999999874 589999999999999999999864 599999999
Q ss_pred EeccC
Q psy4990 80 ELSPV 84 (130)
Q Consensus 80 ~~~~~ 84 (130)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99853
No 92
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.42 E-value=2.3e-13 Score=91.94 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=56.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ..+|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 23 ~~l~~~F-~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 23 EEMYDIF-GKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HHHHHHH-HTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred HHHHHHH-HhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5789999 799999999998753 4589999999999999999999999999999999999843
No 93
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=5.1e-13 Score=88.71 Aligned_cols=61 Identities=15% Similarity=0.350 Sum_probs=55.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++|| |.+|.|+.+. ++..+|++||+|.+.++|.+|+ .|||..++|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 30 GDIDAIF-KDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp HHHHHHT-TTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred HHHHHHH-HhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 5889999 7997 9999998764 4788999999999999999999 899999999999999984
No 94
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=90.99 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=56.2
Q ss_pred HHHHHHhhhccCCeeEEEEec-CCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~-~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.++.++. +.++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 30 DEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp HHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5889999 7999999877764 3456789999999999999999999999999999999999974
No 95
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.41 E-value=6.7e-13 Score=88.28 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=52.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|++ |++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 26 ~~l~~~F-~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 26 EILEKAF-SQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp HHHHHHH-HHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHH-HhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 5889999 6999999999874 5999999999999999999999999999999999843
No 96
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=91.25 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=53.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcE--eCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW--FGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~--f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.+++. +|++||+|++.++|.+|++.|||.. +.||+|.|.|+.
T Consensus 36 ~~L~~lF-~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 36 ADLVEAL-QEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp HHHHHHH-GGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred HHHHHHH-hccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 5889999 79999999999863 6999999999999999999999875 789999999984
No 97
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.9e-13 Score=91.48 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=58.9
Q ss_pred HHHHHHHhhhccCCeeE-EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcc
Q psy4990 19 FEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 86 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~-v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~ 86 (130)
.+||++.| ++||.|.+ |.|+.+.++.++|++||+|.+.++|.+|+.. ||..++||.|.|.......
T Consensus 29 e~~l~~~F-~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 29 KEEIVQFF-SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHHHHHT-TTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred HHHHHHHH-HhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 46899999 79999998 8888877788999999999999999999998 9999999999998875544
No 98
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=5.2e-13 Score=94.43 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=57.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC---CeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG---GRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~---Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|.+|.++.+.++.++|++||+|.+.++|.+|++.|||..+. ||+|.|.|++
T Consensus 109 ~~~l~~~F-~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 109 ENDIRVMF-SSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHH-HhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 36899999 7999999999998877888999999999999999999999998776 4999999874
No 99
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=4.6e-13 Score=97.87 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC--eeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G--r~I~v~~~~~~ 85 (130)
+||++.| ++||.|++|+|..+ ..+|++||+|.+.++|.+|++.|||+.+.| +.|+|+|+...
T Consensus 61 d~L~~~F-s~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 61 DVLHQIF-SKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHHH-HHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHHH-HhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 5789999 79999999999764 257999999999999999999999999965 99999999543
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=4.7e-14 Score=91.43 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=56.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.+ |.+|+..|||..++|+.|.|.++..
T Consensus 16 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 16 EQVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp HHHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred HHHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5789999 799999999998764 3678999999999999 9999999999999999999999854
No 101
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.4e-13 Score=86.34 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=53.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh-CCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l-nGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.++++ +|++||+|.+.++|.+|++.| ||..++|++|.|.++
T Consensus 27 ~~l~~~f-~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 27 TDLRNHF-YQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HHHHHHH-HTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred HHHHHHH-HhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 5889999 79999999999974 799999999999999999999 999999999999885
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.40 E-value=1.2e-12 Score=89.42 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=57.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|.+|.|+.+ .++.++|++||+|.+.++|.+|+ .|||..|+|+.|.|.+..
T Consensus 50 ~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 50 AQDLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHHHHHH-HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred HHHHHHHH-HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999 79999999999875 45788999999999999999999 899999999999999874
No 103
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.4e-13 Score=92.16 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=55.0
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe-----CCeeEEEEeccCcc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-----GGRPVYAELSPVTD 86 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f-----~Gr~I~v~~~~~~~ 86 (130)
.+||++.| ++||.|.+|.|+.. +|++||+|++.++|.+|++.|||+.+ .|++|.+.|+..-.
T Consensus 41 e~~L~~~F-~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 41 RNQLLPVL-EKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp HHHHHHHH-HHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred HHHHHHHH-HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 36899999 79999999988752 79999999999999999999999999 79999999985433
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.4e-13 Score=90.02 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=54.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+ +|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 40 ~~l~~~F-~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 40 QLMRQTF-SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp HHHHHHH-HHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 5889999 69999999999986 7999999999999999999999999999999999984
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=5.8e-13 Score=89.50 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=54.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC-----eeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-----RPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G-----r~I~v~~~~~ 84 (130)
+||++.| ++||.|..|.|+.+ |++||+|.+.++|.+|++.|||..++| +.|.|.++..
T Consensus 30 ~~l~~~F-~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 30 QDLKDHM-REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp HHHHHHH-GGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred HHHHHHH-HhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 5889999 79999999999885 899999999999999999999999999 9999999843
No 106
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.2e-13 Score=89.13 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=54.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.+.++ +|++||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 30 EEMRKLF-EKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp HHHHHHT-STTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred HHHHHHH-hhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 5789999 79999999999864 6999999999999999999999999999999999984
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-12 Score=85.64 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=54.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++||.|.+|.|.. .+|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 27 ~~~l~~~F-~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 27 PTLLRGAF-SPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp HHHHHHHH-TTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred HHHHHHHH-hhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 46899999 7999999999963 479999999999999999999999999999999999843
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=92.04 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=56.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCC--CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~--~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++|| |.+|.|+.+. ++.++|++||+|.+.++|.+|+ .|||..++|+.|.|.++.
T Consensus 34 ~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 34 ESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp SHHHHHS-CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred HHHHHHH-HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 5889999 7999 9999998764 5788999999999999999999 899999999999999874
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.4e-13 Score=89.75 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhh
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~ 90 (130)
..+||++.| ++| .|.+|.|+.+..++++|++||+|.+.++|.+|+ .+||..++||.|.|..+....|..+
T Consensus 29 te~dl~~~F-~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~~ 98 (109)
T 2dnn_A 29 MENDVRDFF-HGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVAA 98 (109)
T ss_dssp CHHHHHHHT-TTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHHH
T ss_pred CHHHHHHHh-ccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhhc
Confidence 346899999 699 899999998777888999999999999999999 6999999999999988866666544
No 110
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=8.1e-13 Score=93.19 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=54.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeE-EEEEecChHHHHHHHHHhCCcEeCC--eeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~-~fV~F~~~~~A~~Ai~~lnGr~f~G--r~I~v~~~~~~ 85 (130)
++|++.| ++||.|.+|+|+... +|+ +||+|.+.++|.+|++.|||..+.| ++|+++|+...
T Consensus 43 ~~L~~lF-s~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 43 DVLHQIF-SKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp HHHHHHH-TTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred HHHHHHH-hCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 5789999 799999999998642 577 9999999999999999999999988 99999999543
No 111
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.6e-13 Score=88.05 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=53.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC--CeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG--GRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~--Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.+..+ +|++||+|.+.++|.+|++.|||..+. |+.|.|.++.
T Consensus 32 ~~l~~~F-~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 32 AALAREF-DRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp HHHHHHH-HTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred HHHHHHH-HhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 5889999 79999999999864 789999999999999999999999999 9999999984
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=90.65 Aligned_cols=60 Identities=27% Similarity=0.392 Sum_probs=55.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.++.+ ++|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 15 ~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 15 GELERAF-SYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp HHHHHHH-HHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred HHHHHHH-HhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 5889999 79999999999986 589999999999999999999999999999999999844
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-13 Score=88.28 Aligned_cols=72 Identities=29% Similarity=0.325 Sum_probs=59.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
||.++.+.-. .+||++.| ++||.| .++.+.++..+|++||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 19 ~V~nLp~~~t-------~~~l~~~F-~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 19 VLSNLSYSAT-------EETLQEVF-EKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp EEESCCTTCC-------HHHHHHHC-SSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4555555422 35889999 699987 566655677899999999999999999999999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
+..
T Consensus 88 a~~ 90 (101)
T 2fc9_A 88 QGP 90 (101)
T ss_dssp CSS
T ss_pred cCC
Confidence 843
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.39 E-value=3.1e-13 Score=92.54 Aligned_cols=60 Identities=23% Similarity=0.198 Sum_probs=54.4
Q ss_pred HHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++|| .|..+.|... .++|++||+|.+.++|.+|++.|||..++||+|.|.+..
T Consensus 43 ~dL~~~F-~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 43 QDLKDLA-RENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HHHHHHH-HHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred HHHHHHH-HHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 5889999 6999 9999999743 368999999999999999999999999999999999874
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.39 E-value=2.3e-13 Score=96.28 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhccCC---eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcch
Q psy4990 18 FFEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~---I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~ 87 (130)
..+||++.| ++||. |.+|+|+.+..++++|++||+|.+.++|.+|++ |||..++||.|.|..+.....
T Consensus 57 te~dL~~~F-~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 57 SVEDVQNFL-SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTEM 127 (136)
T ss_dssp CHHHHHHHT-TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHHH
T ss_pred CHHHHHHHH-HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHHH
Confidence 346899999 79999 899999987668899999999999999999999 999999999999998854443
No 116
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.39 E-value=3.4e-13 Score=98.79 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=59.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 103 ~~L~~~F-~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 103 ADIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp HHHHHHH-HHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred HHHHHHH-HhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5789999 699999999999877778899999999999999999999999999999999999854
No 117
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=4.4e-13 Score=100.01 Aligned_cols=72 Identities=18% Similarity=0.359 Sum_probs=62.5
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
++|.++++..+.+ ++|++.| ++||.|.+|+|+.+ .+|++||+|.+.++|.+|++.|||..+.|++|.|.
T Consensus 7 l~V~nL~~~~~~~------~~L~~~F-~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 7 LMVYGLDQSKMNC------DRVFNVF-CLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp EEEECCCTTTCCH------HHHHHHH-TTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEeCCCcccCCH------HHHHHHH-HhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 4677777544444 4899999 79999999999875 37999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 76 ~s~ 78 (205)
T 3tyt_A 76 VSK 78 (205)
T ss_dssp ECS
T ss_pred Ecc
Confidence 984
No 118
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=8.1e-13 Score=96.69 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=59.0
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|..|.|+.+. ++.++|++||+|.+.++|.+|++.|||+.|+|+.|.|.++.
T Consensus 139 ~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 139 DDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred HHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999 799999999998764 56789999999999999999999999999999999999984
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.38 E-value=6.7e-13 Score=89.70 Aligned_cols=57 Identities=19% Similarity=0.446 Sum_probs=53.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.+. +|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 46 ~~L~~~F-~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 46 SELNEIF-GPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHHHH-TTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred HHHHHHH-HhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5889999 799999999998 58999999999999999999999999999999999843
No 120
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.9e-13 Score=86.42 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=52.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.++ +|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 23 ~~l~~~F-~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 23 QEIRSLF-EQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp HHHHHHH-HTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred HHHHHHH-HhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 5789999 799999999998 4799999999999999999999999999999999984
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=8.8e-13 Score=92.86 Aligned_cols=62 Identities=24% Similarity=0.454 Sum_probs=57.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCC--eeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G--r~I~v~~~ 82 (130)
+||++.| ++||.|..+.++.+. ++.++|++||+|.+.++|.+|++.|||+.+.| ++|.|.|+
T Consensus 104 ~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 104 DQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 6899999 799999999998865 57789999999999999999999999999988 99999874
No 122
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8e-13 Score=88.98 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=53.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh--CCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL--NNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l--nGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+++ +|++||+|++.++|.+|++.| ++..+.||+|.|.|+..
T Consensus 30 ~~L~~~F-~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 30 TEVIALG-LPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp HHHHHTT-TTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred HHHHHHH-HhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 5889999 69999999999874 799999999999999999977 57889999999999853
No 123
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.6e-14 Score=89.83 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=55.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|++.+.
T Consensus 20 ~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 20 QDLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp HHHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HHHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5789999 799999999998763 4678999999999999999999999999999999987653
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=8.1e-13 Score=98.11 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=57.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. +.++|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 118 ~~l~~~F-~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 118 KALYDTF-SAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHH-GGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHH-hhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 5899999 799999999998764 34799999999999999999999999999999999999843
No 125
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.37 E-value=2.8e-13 Score=95.03 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=63.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++++.- ..+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.|.
T Consensus 51 ~V~nLp~~~-------te~~L~~~F-~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 51 KVDNLTYRT-------SPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp EEECCCSSC-------HHHHHHHHH-GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred EEeCCCCCC-------CHHHHHHHH-HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455665542 235899999 799999999998764 46789999999999999999999999999999999999
Q ss_pred ecc
Q psy4990 81 LSP 83 (130)
Q Consensus 81 ~~~ 83 (130)
++.
T Consensus 123 ~a~ 125 (135)
T 2lea_A 123 MAR 125 (135)
T ss_dssp ECC
T ss_pred ECC
Confidence 984
No 126
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=5.1e-13 Score=101.46 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=64.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccC--CeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG--~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~ 78 (130)
||.+++..-. .+||++.| ++|| .|++|+|+.+. ++.++|++||+|.+.++|.+|++.|||..|+||.|.
T Consensus 72 fVgnL~~~~t-------e~~L~~~F-~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 72 YIGNLTWWTT-------DEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 4555554332 35889999 7999 99999998764 578999999999999999999999999999999999
Q ss_pred EEeccC
Q psy4990 79 AELSPV 84 (130)
Q Consensus 79 v~~~~~ 84 (130)
|.++..
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999853
No 127
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=4.3e-13 Score=90.70 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=53.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc--EeCCeeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr--~f~Gr~I~v~~~~~~ 85 (130)
+||++.| ++||.|.+|.|++. +|++||+|++.++|.+|++.|||. .+.||+|.|.|+...
T Consensus 30 ~~L~~~F-~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 30 ADLVEAL-EKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp HHHHHHH-TTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred HHHHHHH-HhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 5889999 69999999999864 799999999999999999998765 599999999998543
No 128
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2e-13 Score=85.74 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|+..+| ..++|++|.|.++
T Consensus 15 ~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5789999 799999999998764 47789999999999999999999999 9999999999874
No 129
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=89.71 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=57.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kf-G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||+|+...-. -+++..+|++.| ++| |+|.+|. .|++||+|.+.++|.+|++.|||..+.||+|+++
T Consensus 13 YV~NL~~~~~---~~~lk~~L~~lF-~~yGG~Vl~Vt---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 13 YVYNLPANKD---GKSVSNRLRRLS-DNCGGKVLSIT---------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEESCCTTSC---HHHHHHHHHHHH-HTTTCCEEECC---------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred EEeCCCCcCC---HHHHHHHHHHHH-HHcCCeeEEEe---------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4555554322 246778999999 799 5999992 2999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
|+..
T Consensus 80 ~A~~ 83 (96)
T 2diu_A 80 FTPK 83 (96)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9943
No 130
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.7e-13 Score=92.99 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=59.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC--cEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN--RWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG--r~f~Gr~I~v 79 (130)
+|.++++.- .++||++.| ++||.|.+|.|+++ +|++||+|++.++|.+|++.||+ ..+.||+|.|
T Consensus 35 fVgNLp~~v-------te~dL~~lF-~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 35 HIRKLPIDV-------TEGEVISLG-LPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp EEESCCTTC-------CHHHHHHHH-TTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred EEeCCCCCC-------CHHHHHHHH-HhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456666542 235899999 79999999999874 79999999999999999999984 6899999999
Q ss_pred EeccC
Q psy4990 80 ELSPV 84 (130)
Q Consensus 80 ~~~~~ 84 (130)
.|+..
T Consensus 102 ~~a~~ 106 (119)
T 2ad9_A 102 QFSNH 106 (119)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99853
No 131
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.6e-13 Score=94.31 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=58.1
Q ss_pred HHHHHHHhhhccCCeeE-EEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcch
Q psy4990 19 FEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~-v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~ 87 (130)
.+||++.| ++||.|.+ +.+..+.++..+|++||+|.+.++|.+|+. |||..++||.|.|.++....+
T Consensus 39 e~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 39 NKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp HHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred HHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 35899999 79999998 455555667889999999999999999999 999999999999999865443
No 132
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=1.6e-12 Score=93.95 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=59.0
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 128 ~~~l~~~f-~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 128 DDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp HHHHHHHH-HTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHH-HHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 36899999 699999999998874 67889999999999999999999999999999999999984
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=2.5e-12 Score=90.11 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=58.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|++.|||..+.|++|.+.+...
T Consensus 17 ~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 17 EEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp HHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999 799999999998765 678899999999999999999999999999999999999854
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7.9e-13 Score=89.53 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=56.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+.. ||..++|+.|.|.++.
T Consensus 42 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 42 ESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred HHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 5889999 799999999998764 467899999999999999999998 9999999999999873
No 135
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.36 E-value=1.7e-12 Score=106.98 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=64.8
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
|||.+|+..-. .++|++.| ++||.|+.|.|+.+ .++.++|++||+|.+.++|.+|+..|||.+|+|+.|.|
T Consensus 105 lfV~nL~~~~t-------e~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 105 LFVARVNYDTT-------ESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred EEEeCCCCCCC-------HHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 35666665432 35889999 79999999999876 35778999999999999999999999999999999999
Q ss_pred EeccC
Q psy4990 80 ELSPV 84 (130)
Q Consensus 80 ~~~~~ 84 (130)
.++..
T Consensus 177 ~~a~~ 181 (437)
T 3pgw_S 177 DVERG 181 (437)
T ss_pred EEeCC
Confidence 99953
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=4.8e-13 Score=88.43 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=53.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|.+|.+.+ .+|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 41 ~~~l~~~f-~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 41 EADLIPLF-QNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp HHHHHHHH-HTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred HHHHHHHH-HhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 36889999 7999999999984 37999999999999999999999999999999998863
No 137
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.36 E-value=5.6e-13 Score=94.15 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=55.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+ ++|++||+|.+.++|.+|+..|||..++|++|.|.++.
T Consensus 88 ~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 88 TELERAF-GYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp HHHHHHH-HHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred HHHHHHH-HhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5789999 79999999999886 48999999999999999999999999999999999974
No 138
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.8e-13 Score=89.27 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.| +|+|+.+.+++++|++||+|.+.++|.+|+ .+||..++||.|.|..+.
T Consensus 29 e~~l~~~F-~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 29 ENDIYNFF-SPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp HHHHHHSS-CSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred HHHHHHHH-HHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 36899999 799954 999988777889999999999999999999 489999999999998764
No 139
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=84.33 Aligned_cols=56 Identities=25% Similarity=0.523 Sum_probs=52.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.+++ +++||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 25 ~~l~~~F-~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 25 QELRAKF-EEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp HHHHHHH-HTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred HHHHHHH-HhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5889999 6999999999985 499999999999999999999999999999999984
No 140
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.7e-13 Score=87.94 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred HHHHHHhhhccCC-eeEEEEe-cCC-CCCceeEEEEEecChHHHHHHHHHhC--CcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGE-IEEMNVC-DNL-GDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~-I~~v~i~-~~~-~~~~~G~~fV~F~~~~~A~~Ai~~ln--Gr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||. |.+|.++ .+. ++..+|++||+|.+.++|.+|++.|| +..++|+.|.|.++.
T Consensus 23 ~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 23 EEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp HHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred HHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 5889999 69998 9999998 443 35789999999999999999999996 589999999999984
No 141
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.35 E-value=7.9e-13 Score=85.69 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=54.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 86 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~ 86 (130)
+||++.| ++| .|.+|.|+ ..+|++||+|.+.++|.+|++.|||..++|++|.|.+++...
T Consensus 20 ~~l~~~F-~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 20 QEVHDLL-KDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHHHT-CSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHHH-hhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 5889999 799 99999996 458999999999999999999999999999999999987654
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.35 E-value=9.5e-13 Score=88.47 Aligned_cols=56 Identities=25% Similarity=0.400 Sum_probs=52.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.| .+|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 43 ~~l~~~F-~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 43 SDVETIF-SKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHH-GGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHH-HhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 5889999 79999999999 36899999999999999999999999999999999984
No 143
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.35 E-value=1.5e-12 Score=87.86 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=55.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..+ |..++|+.|.|.++.
T Consensus 40 ~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 40 EGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp HHHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred HHHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 5899999 799999999998764 4778999999999999999999986 599999999999873
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=6.9e-12 Score=87.74 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++||.|.+|.++.+..+.++|++||+|.+.++|.+|+..|||..+.|+.|.+.+...
T Consensus 14 ~~~l~~~f-~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 14 EDILKQYF-QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp HHHHHHHH-GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHH-HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 35889999 799999999999887778899999999999999999999999999999999999843
No 145
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-13 Score=94.97 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=62.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeE--EEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCc----EeCC
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE--MNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNR----WFGG 74 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~--v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr----~f~G 74 (130)
||.+++..-. ++||++.| ++||.|.. |+|+.+. ++.++|++||+|.+. +|.+|+..|||. .++|
T Consensus 27 fV~nL~~~~t-------e~~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 27 ILRNLNPHST-------MDSILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp EECSCCTTCC-------SHHHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred EEeCCCCCCC-------HHHHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4556655332 35889999 79999977 9998875 678999999999999 999999999999 9999
Q ss_pred eeEEEEeccC
Q psy4990 75 RPVYAELSPV 84 (130)
Q Consensus 75 r~I~v~~~~~ 84 (130)
|.|.|.++..
T Consensus 98 r~l~V~~a~~ 107 (131)
T 2m2b_A 98 KTINVEFAKG 107 (131)
T ss_dssp CCCCCEECCC
T ss_pred EEEEEEECCC
Confidence 9999999843
No 146
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.34 E-value=5.1e-12 Score=83.61 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=52.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.+. +|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 38 ~~L~~~F-~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 38 EDLFRIF-SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp HHHHHHH-GGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred HHHHHHH-HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 5789999 799999999994 5899999999999999999999999999999999874
No 147
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=83.58 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=52.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.+++ |++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 24 ~~l~~~F-~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 24 QELRSLF-ERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp HHHHHHH-HHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHH-HcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 5889999 6999999999985 489999999999999999999999999999999984
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.34 E-value=4.6e-12 Score=88.71 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=56.2
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCee--EEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP--VYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~--I~v~~~ 82 (130)
.+||++.| ++||.|..+.++.+. ++.++|++||+|.+.++|.+|++.|||+.+.|+. |.+.|+
T Consensus 102 ~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 102 QKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 36899999 799999999998764 5678999999999999999999999999999975 888774
No 149
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.4e-12 Score=84.03 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=55.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 30 QDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 5889999 799999999998764 47889999999999999999998 5889999999999983
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.3e-12 Score=84.17 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=56.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhcc--CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKY--GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kf--G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v 79 (130)
||.++.+.-. .+||++.| ++| |.|.+|.++ +|++||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 19 ~V~nLp~~~t-------~~~l~~~F-~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 19 YVRNLMLSTS-------EEMIEKEF-NNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4556655422 25789999 799 999999876 479999999999999999999999999999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
.++.
T Consensus 84 ~~a~ 87 (99)
T 2cpd_A 84 TLAK 87 (99)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9984
No 151
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.2e-13 Score=87.23 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|. +.++.. ..+|++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 34 ~~l~~~F-~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 34 SDLKRAL-RELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HHHHHHH-HHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred HHHHHHH-HhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 5889999 7999997 666543 5689999999999999999999999999999999999843
No 152
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.33 E-value=3.8e-13 Score=84.18 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=54.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.++.+. ++.++|++||+|.+.++|.+|++. +|..++|+.|.+.++
T Consensus 14 ~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 14 EKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5789999 699999999998764 467899999999999999999985 999999999998763
No 153
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=4.5e-12 Score=97.00 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=60.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|+..|||+.++|++|.|.|+..
T Consensus 199 ~~~l~~~f-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 199 VDALCRAL-SAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHHHHT-CSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred HHHHHHHh-hCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 36899999 799999999999887788999999999999999999999999999999999999854
No 154
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2.2e-12 Score=89.00 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=55.5
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
.+||++.| ++||.|.+|.|.. .+|++||+|.+.++|.+|+..|||..++|+.|.|.++...
T Consensus 51 e~~L~~~F-~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 51 PTLLRGAF-SPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHHHHHHH-STTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred HHHHHHHH-HccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 47899999 7999999999973 4799999999999999999999999999999999998543
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.33 E-value=1.7e-12 Score=85.85 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=55.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|+. ||..++|+.|.|.++
T Consensus 24 ~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 24 TEIRSFF-ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred HHHHHHH-HhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 5789999 79999999999987777889999999999999999999 999999999998877
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=1e-12 Score=86.44 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=52.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+ +|++||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 26 ~~l~~~F-~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 26 EDLFRIF-SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp HHHHHHH-TTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred HHHHHHH-HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5889999 799999999995 5899999999999999999999999999999999983
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3.7e-13 Score=92.64 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=52.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC--CcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln--Gr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|.+. +|++||+|++.++|.+|++.|| +..+.||+|.|.|+..
T Consensus 41 ~~L~~lF-~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 41 SAVLKLA-EPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp HHHHTTT-TTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred HHHHHHH-HhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 5899999 69999999999753 7999999999999999999886 4669999999999843
No 158
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.31 E-value=9.4e-13 Score=86.15 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=52.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|..+ ..++.++|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 30 ~~~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 30 EDELKEVF-EDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp HHHHHHHH-CSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred HHHHHHHH-hhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 35889999 699988776 2335789999999999999999999999999999999999984
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-13 Score=91.69 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=59.9
Q ss_pred HHHHHHHhhhccCC---eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchh
Q psy4990 19 FEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 88 (130)
Q Consensus 19 ~eDi~~e~~~kfG~---I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~ 88 (130)
.+||++.| ++||. |.+|.|+.+..+.++|++||+|.+.++|.+|+. +||..++||.|.|.++....+.
T Consensus 25 e~~l~~~F-~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~ 95 (107)
T 2lmi_A 25 MEDVLNFF-SDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVD 95 (107)
T ss_dssp SHHHHHHT-TTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHH
T ss_pred HHHHHHHH-HhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHH
Confidence 35889999 69888 999999987668899999999999999999999 9999999999999988654443
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-13 Score=92.83 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhccCCeeE--------EEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 18 FFEDVFVECEDKYGEIEE--------MNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~--------v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
..+||++.| ++||.|.. |.|+.+ .++..+|++||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 20 t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 20 TIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 346899999 79999999 888776 346789999999999999999999999999999999999984
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.30 E-value=3.7e-12 Score=89.63 Aligned_cols=64 Identities=14% Similarity=0.256 Sum_probs=58.2
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.++.+ .++.++|++||+|.+.++|.+|++.|||..+.|++|.+.+...
T Consensus 18 ~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 18 RELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp HHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5789999 79999999999875 3567899999999999999999999999999999999999853
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.5e-12 Score=81.28 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHhhhccCCeeEE-EEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEM-NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v-~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++||.|.+| .|+.+. ..|.+||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 29 ~~~l~~~F-~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 29 WEVLDSLL-VQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp HHHHHHHH-HHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred HHHHHHHH-HhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 35889999 799999999 577653 245599999999999999999999999999999999854
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=91.01 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhccCCe----eEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCcchhhh
Q psy4990 17 NFFEDVFVECEDKYGEI----EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I----~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~~~~~~ 90 (130)
...+||++.| ++||.| ..|+|+.+.+++++|++||+|.+.++|.+|++. ||..++||.|.|..+....+...
T Consensus 35 ~te~dl~~~F-~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~ 110 (123)
T 2dha_A 35 ATAEEVVAFF-GQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQV 110 (123)
T ss_dssp CCHHHHHHHH-HTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHH
T ss_pred CCHHHHHHHH-HhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHH
Confidence 3456999999 699986 689998877788999999999999999999996 99999999999988865555444
No 164
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.6e-12 Score=87.70 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=53.2
Q ss_pred HHHHHHhhhccCCe----eEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEI----EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I----~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.| ..+.+. ++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 40 ~~l~~~f-~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 40 RDLVSLF-ARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp HHHHHHT-HHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred HHHHHHH-HHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 5888999 699999 455544 457799999999999999999999999999999999999843
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.29 E-value=1e-11 Score=92.12 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=63.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
||.++++.-. ++||++.| ++||.|.+|+|+++. ++.++|++||+|.+.++|.+|++.+||..+.|+.|.+.
T Consensus 19 fVgnLp~~~t-------e~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 19 YVGDLHPDVT-------EAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp EEESCCTTCC-------HHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 5566655333 35889999 799999999998764 47889999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
+...
T Consensus 91 ~~~~ 94 (213)
T 4f02_A 91 WSQR 94 (213)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8854
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=1.2e-11 Score=86.45 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=52.9
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeE-EEEEecChHHHHHHHHHhCCcEeCC--eeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~-~fV~F~~~~~A~~Ai~~lnGr~f~G--r~I~v~~~~~ 84 (130)
++|++.| ++||.|.+|+|... .|+ +||+|.+.++|.+|++.|||..+.| +.|++.|+..
T Consensus 40 ~~L~~~F-s~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 40 DVLYTVC-NPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp HHHHHHH-TTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred HHHHHHH-HhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 5899999 79999999999763 286 9999999999999999999999987 6999999844
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.28 E-value=8.9e-12 Score=89.83 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|..|.|+.+. ++.++|++||+|.+.++|.+|+.. +|..++|+.|.|.++.
T Consensus 118 ~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 118 EHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp HHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred HHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 36899999 799999999998764 577899999999999999999986 8999999999999984
No 168
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3e-12 Score=83.35 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=55.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCC-eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC-cEeCCeeEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGE-IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN-RWFGGRPVYA 79 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~-I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG-r~f~Gr~I~v 79 (130)
||.++++.-. .+||++.| ++||. |..+.+. .+|++||+|.+.++|.+|++.||| ..++|+.|.|
T Consensus 12 ~V~nLp~~~t-------~~~l~~~F-~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 12 YIGNLSPAVT-------ADDLRQLF-GDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp EEECCCTTCC-------HHHHHHHH-HHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4555655432 35889999 69999 6666663 368999999999999999999999 9999999999
Q ss_pred Eecc
Q psy4990 80 ELSP 83 (130)
Q Consensus 80 ~~~~ 83 (130)
.++.
T Consensus 78 ~~a~ 81 (93)
T 2cqh_A 78 DYSV 81 (93)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9984
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.27 E-value=3e-12 Score=87.14 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=50.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+||++.| ++||.|..|.|+.+ |++||+|.+.++|.+|++.|||..++|+.|.+.++
T Consensus 31 ~~l~~~F-~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 31 QDLKDHM-REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp THHHHHH-GGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred HHHHHHH-HhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 5888999 69999999999875 89999999999999999999999999999544443
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=1.3e-11 Score=94.78 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=57.7
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCC--CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~--~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|..|.|+.+.. +.++|++||+|.+.++|.+|+ .|||+.++|+.|.|.|+.
T Consensus 225 ~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 225 ENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp HHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred HHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 36899999 7999999999998765 788999999999999999999 999999999999999984
No 171
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.27 E-value=8.8e-13 Score=93.62 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=56.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
++||++.| ++|| |++|.|+.+..++++|++||+|++.++|.+|+ .+||..++||.|.|.....
T Consensus 60 e~dL~~~F-~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 60 ENDIYNFF-SPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp HHHHHHHH-CSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred HHHHHHHH-HhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 46899999 7999 77999998766889999999999999999999 7999999999999988754
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=8.4e-12 Score=87.85 Aligned_cols=63 Identities=8% Similarity=0.095 Sum_probs=57.2
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++ +||..++|++|.|.++.
T Consensus 101 ~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 101 PKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred HHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 36889999 799999999998764 57889999999999999999998 89999999999999974
No 173
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=90.76 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=53.8
Q ss_pred HHHHHHHhhhccCCeeEE--------EEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEM--------NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v--------~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|..+ .+.. ++..+|++||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 59 e~~L~~~F-~~~G~i~~~~~~~~~di~~~~--~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 59 EKDLKYIF-GRYVDFSSETQRIMFDIRLMK--EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp HHHHHHHH-GGGCCTTCHHHHHHCEEEEEE--ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred HHHHHHHH-HHhCCcccccccceeeEEecc--CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46889999 799999874 3332 36789999999999999999999999999999999999983
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=1.4e-11 Score=94.11 Aligned_cols=78 Identities=14% Similarity=0.353 Sum_probs=63.3
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 1 ~~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+||.++...-.++ +|++.|.+.| ++||.|.+|+|.+ ++..+|++||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 12 l~V~nlp~~~~~~---~l~~~L~~~F-~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 12 IYINNLNEKIKKD---ELKKSLYAIF-SQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred EEEeCCCCCCCHH---HHHHHHHHHH-hccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3566666543332 3444566889 7999999999987 35788999999999999999999999999999999999
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
++..
T Consensus 86 ~a~~ 89 (282)
T 3pgw_A 86 YAKT 89 (282)
T ss_pred Eecc
Confidence 9843
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=1.2e-11 Score=91.62 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
..++|++.| ++||.|.+|.|+++.++..+|++||+|++.++|.+|+..++ ..|+||+|.|.+.
T Consensus 122 t~~~L~~~F-~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 122 TLDDIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp CHHHHHHHH-TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred CHHHHHHHH-hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 346899999 79999999999988778889999999999999999998665 5999999999875
No 176
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=2.7e-13 Score=89.67 Aligned_cols=62 Identities=21% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|....+....++.++|++||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 32 ~~l~~~F-~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 32 AELKVAI-SELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp HHHHHHH-HHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred HHHHHHH-HHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5889999 69999988333333345778999999999999999999 99999999999999874
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.25 E-value=7.3e-12 Score=89.08 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=53.2
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|..+ ..++.++|++||+|.+.++|.+|++.|||+.++||+|.|.|+.
T Consensus 114 ~~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 114 DELKEVF-EDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHC-TTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHH-HhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 6899999 699988776 4446789999999999999999999999999999999999984
No 178
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-11 Score=82.72 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++||++.| ++||.|.+|.|+. .++|++||+|.+.++|.+|++.++| +.|++|+|.++.
T Consensus 31 e~~L~~~F-~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 31 KDVLLRLL-QKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp HHHHHHHH-HTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred HHHHHHHH-HhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 47899999 7999999999984 4689999999999999999999666 689999999874
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.25 E-value=9.2e-12 Score=79.73 Aligned_cols=54 Identities=13% Similarity=0.321 Sum_probs=49.7
Q ss_pred HHHHHHhhhcc----C-------CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 20 EDVFVECEDKY----G-------EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 20 eDi~~e~~~kf----G-------~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+||++.| ++| | .|.++.+..+ +|++||+|.+.++|.+|+ .|||..++|+.|.|.
T Consensus 21 ~~l~~~F-~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 21 EAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HHHHHHH-HHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred HHHHHHH-HHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 5788888 699 8 9999999865 799999999999999999 999999999999986
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.24 E-value=1.1e-11 Score=90.50 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=56.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
.+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..+.|+.|.+.+...
T Consensus 42 ~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 42 EDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred HHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 35889999 799999999998764 567899999999999999999999999999999999988744
No 181
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=80.98 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHHHHHhhhccCCeeEEEEecC-CCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~-~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++|+ .|.++.+ .++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 30 ~~l~~~F-~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 30 ETLKESF-DGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp HHHHHTS-TTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHh-cCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 5788888 5774 5666654 356789999999999999999999999999999999999984
No 182
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.7e-12 Score=81.30 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+| +....++. ++||+|.+.++|.+|+. |||..++|+.|.|.+..
T Consensus 23 ~~l~~~F-~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 23 AQLSEYF-LAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp HHHHHHG-GGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred HHHHHHH-HhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 5899999 799999998 43332222 99999999999999999 99999999999998764
No 183
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=3.4e-12 Score=89.32 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHHHHHHhhhccCCee--EEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 19 FEDVFVECEDKYGEIE--EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~--~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
++||++.| ++| .|. +|.|+.+..+.++|++||+|.+.++|.+|++ +++..++||.|.|..+...
T Consensus 56 e~dL~~~F-~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 56 KEEIVQFF-SGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp HHHHHHHT-TTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECHH
T ss_pred HHHHHHHH-hcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCHH
Confidence 46899999 799 677 8999987668899999999999999999998 4889999999999877543
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.22 E-value=2.2e-11 Score=93.04 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC-CeeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~-Gr~I~v~~~ 82 (130)
.+||++.| ++||.|.+|.|..+. +|++||+|.+.++|.+|++.|||..++ |+.|+|+|+
T Consensus 221 ~~~l~~~F-~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 221 ELMLSMLF-NQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred HHHHHHHH-HhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 46899999 799999999999653 589999999999999999999999999 999999986
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=3.4e-11 Score=92.68 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe------------CCeeEEEEeccC
Q psy4990 18 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF------------GGRPVYAELSPV 84 (130)
Q Consensus 18 ~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f------------~Gr~I~v~~~~~ 84 (130)
.+++|++.| ++||.|.+|.|+.. +|++||+|.+.++|+.|+.+|||..+ .|+.|.|.++..
T Consensus 156 tEe~L~~~F-~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVF-SRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHH-HTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cHHHHHHHH-HccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 567999999 79999999999863 79999999999999999999999999 899999999843
No 186
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.20 E-value=4.7e-11 Score=86.00 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=56.5
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+.. +|..++|+.|.+.+...
T Consensus 28 ~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 28 ESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred HHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 5889999 799999999998764 467899999999999999999986 99999999999998843
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.6e-11 Score=86.94 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecC----hHH----HHHHHH--HhCCcEeCCeeEEEEeccCc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRR----EED----AEKAVN--DLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~----~~~----A~~Ai~--~lnGr~f~Gr~I~v~~~~~~ 85 (130)
.++|++.| ++||.|.+|.++.++ ++.++|++||+|.+ +++ |.+|+. .|||..++||+|+|.+-+..
T Consensus 20 e~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 20 DISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 35899999 799999999998654 57999999999996 433 899999 89999999999999987543
No 188
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-10 Score=77.05 Aligned_cols=59 Identities=15% Similarity=0.374 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 16 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 16 ~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+++..+|.+.| ++||.|..++++.+. +||+|.+.++|.+|++ |||..++||.|+|.+..
T Consensus 26 ~~l~~~L~~~F-~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 26 DALIDELLQQF-ASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHHHHHH-HhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 47889999999 799999999999862 7999999999999998 99999999999999874
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.16 E-value=2.5e-11 Score=90.90 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=55.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|..+. +|++||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 50 ~~L~~~F-~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 50 QSLFILF-GVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp HHHHHHH-HHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred HHHHHHH-HhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 5889999 699999999999863 7999999999999999999999999999999999984
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.16 E-value=1.1e-10 Score=89.29 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=59.0
Q ss_pred HHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
+||++.| ++||.|.++.++.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.+.++...
T Consensus 110 ~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 110 QQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 5889999 799999999998754 5788999999999999999999999999999999999998543
No 191
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.15 E-value=5.8e-11 Score=83.79 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=60.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCC---CceeEEEEEecChHHHHHHHHHhCCcEeC---Ce
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGD---HLVGNVYIKFRREEDAEKAVNDLNNRWFG---GR 75 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~---~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~---Gr 75 (130)
+|.++++.-. .+||++.| ++||.|.+|.|+.+..+ .++|++||+|.+.++|.+|++.|||..+. ++
T Consensus 7 ~V~nLp~~~t-------e~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 7 FVGQVPRTWS-------EKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 4556655422 35889999 69999999999876544 68999999999999999999999998876 67
Q ss_pred eEEEEecc
Q psy4990 76 PVYAELSP 83 (130)
Q Consensus 76 ~I~v~~~~ 83 (130)
++.+.+..
T Consensus 79 ~~~~~~~~ 86 (175)
T 3nmr_A 79 PIQMKPAD 86 (175)
T ss_dssp CCEEEECG
T ss_pred ceEEcccc
Confidence 78887764
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=3e-11 Score=87.74 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=54.2
Q ss_pred HHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC-CeeEEEEecc
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~-Gr~I~v~~~~ 83 (130)
+||++.| ++|| .|.+|.+..+. +|++||+|.+.++|.+|+..|||+.++ |++|.+.|+.
T Consensus 135 ~~l~~~f-~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 135 EDLKVLF-SSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp HHHHHHH-HHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred HHHHHHH-HHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 6899999 7999 99999997642 799999999999999999999999999 9999999974
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.14 E-value=1.9e-11 Score=88.85 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=55.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.++.+. +|++||+|.+.++|.+|+..|||..+.|++|.+.++..
T Consensus 19 ~~l~~~F-~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 19 QSLFILF-GVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHHHHHH-HTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred HHHHHHH-HhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 5889999 799999999998863 78999999999999999999999999999999999843
No 194
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=5.1e-11 Score=80.70 Aligned_cols=71 Identities=10% Similarity=0.197 Sum_probs=54.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC----CCceeEEEEEecChHHHHHHHHHhCCcEeCCeeE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~----~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I 77 (130)
||.++++.-. .+||++.| ++||.|. +.++.+.. +.++|++||+|.+.++|.+|++.|++ ++|+.+
T Consensus 12 fVgnLp~~~t-------e~~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 12 FVGGLPPDID-------EDEITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp EEECCCTTCC-------HHHHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred EEcCCCCCCC-------HHHHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 4555554332 35889999 7999999 77765432 47899999999999999999999953 777777
Q ss_pred EEEecc
Q psy4990 78 YAELSP 83 (130)
Q Consensus 78 ~v~~~~ 83 (130)
.+...+
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776554
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.13 E-value=9.1e-11 Score=89.53 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=57.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHh-CCcEeC---CeeEEEEeccC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL-NNRWFG---GRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~l-nGr~f~---Gr~I~v~~~~~ 84 (130)
+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|+..| +|.++. +|+|.|.++..
T Consensus 111 ~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 111 ELLEQAF-SQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHH-GGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHH-HhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 5899999 7999999999998777889999999999999999999999 566665 99999999854
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.12 E-value=7.6e-11 Score=90.46 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=53.8
Q ss_pred HHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
++|++.| ++|| .|.+|.++.+..+.++|++||+|.+.++|.+|+..|||..++|+.|.+.++..
T Consensus 132 ~~l~~~f-~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 132 RNIRDLL-QDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp HHHHHHH-HHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHH-HHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 5789999 7999 99999999876677899999999999999999999999999999999999853
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.11 E-value=8.1e-11 Score=88.12 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=53.9
Q ss_pred HHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeC-CeeEEEEecc
Q psy4990 20 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~-Gr~I~v~~~~ 83 (130)
+||++.| ++|| .|..|.+... .+|++||+|.+.++|.+|+..|||..++ |++|.|.|+.
T Consensus 166 ~~l~~~f-~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 166 EDLKVLF-SSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp HHHHHHH-HTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred HHHHHHH-HHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 6899999 7999 9999999653 2689999999999999999999999999 9999999974
No 198
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.8e-10 Score=77.12 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 14 ~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
+-+++..+|.+.| +.||.|..+++..+. +||+|.+.++|.+|++ |||..++||.|+|.+-
T Consensus 33 fd~~l~~~L~~~F-~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 33 FPEDLRTELMQTL-GSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp CCHHHHHHHHHHH-HHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred CCHHHHHHHHHHH-HHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 3358899999999 799999999999862 9999999999999998 9999999999999864
No 199
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.10 E-value=1.3e-10 Score=75.82 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe--CCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f--~Gr~I~v~~~~ 83 (130)
.+||++.| ++||.|.+|.|+.+ ++|++||+|.+.++|. .|+|..+ .|+.|.+.++.
T Consensus 25 e~~L~~~F-~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 25 AEELQQFF-CQYGEVVDVFIPKP----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp HHHHHHHH-TTTSCEEEEECCSS----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred HHHHHHHH-hccCCEEEEEEeeC----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 35899999 79999999999985 5899999999999988 3677765 59999998873
No 200
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.07 E-value=1.6e-10 Score=81.15 Aligned_cols=73 Identities=11% Similarity=0.259 Sum_probs=59.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCC-CCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEE
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 80 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~-~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~ 80 (130)
+|.++++.-. .+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+.. +..++|+.|.+.
T Consensus 7 ~v~nLp~~~t-------~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 7 FIGGLNWDTT-------EDNLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp EECSCCTTCC-------HHHHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred EEeCCCCCCC-------HHHHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 4556655332 35889999 799999999998764 578899999999999999999984 678999999988
Q ss_pred eccC
Q psy4990 81 LSPV 84 (130)
Q Consensus 81 ~~~~ 84 (130)
+...
T Consensus 77 ~~~~ 80 (167)
T 2cjk_A 77 RAIP 80 (167)
T ss_dssp ECCC
T ss_pred cccc
Confidence 7743
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.06 E-value=1.9e-10 Score=87.70 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=59.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
||.++.+.- ..+||++.| ++||.|.+|.+.++ +|++||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 26 ~V~nLp~~~-------te~~l~~~F-~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 26 FVGNLPTDI-------TEEDFKRLF-ERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp EEESCCTTC-------CHHHHHHHT-GGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEECCCCCC-------CHHHHHHHH-HhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 455565432 235889999 79999999999764 69999999999999999999999999999999998
Q ss_pred cc
Q psy4990 82 SP 83 (130)
Q Consensus 82 ~~ 83 (130)
+.
T Consensus 93 a~ 94 (261)
T 3sde_A 93 AT 94 (261)
T ss_dssp CC
T ss_pred cc
Confidence 84
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.01 E-value=2.9e-10 Score=84.59 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=49.0
Q ss_pred HHHHHHHhhhccCCe--eEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCe
Q psy4990 19 FEDVFVECEDKYGEI--EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 75 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I--~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr 75 (130)
.+||++.| ++||.| .+|++..+. +..+|++||+|.+.++|.+|+..|||..++|+
T Consensus 137 ~~~L~~~F-~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 137 EENFFEIC-DELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HHHHHHHH-HHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHHHH-HhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 36899999 699999 899998764 34569999999999999999999999999998
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=1.1e-09 Score=88.05 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=51.6
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe---CCe--eEEEEeccC
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGR--PVYAELSPV 84 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f---~Gr--~I~v~~~~~ 84 (130)
++||++.| ++||.|.+|.++. .+||+||+|++.++|++|++.|||..+ .|+ ++.+.|+..
T Consensus 34 e~~L~~~F-~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 34 RNQLLPVL-EKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp HHHHHHHH-HTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred HHHHHHHH-HhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 46889999 7999999998865 379999999999999999999999998 355 678888743
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.97 E-value=4.2e-11 Score=85.12 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=56.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEe
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 81 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~ 81 (130)
+|.++++.-.+ +||++.| ++||.|..+.+....++.++|++||+|.+.++|.+|+ .|||..+.|++|.+.+
T Consensus 17 ~V~nLp~~~t~-------~~l~~~f-~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 17 FIGNLNPNKSV-------AELKVAI-SELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp EEECCCTTSCH-------HHHHHHH-HHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred EEeCCCCCCCH-------HHHHHHH-HHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 45566554333 4777778 5888776643433334567899999999999999999 5999999999999999
Q ss_pred ccC
Q psy4990 82 SPV 84 (130)
Q Consensus 82 ~~~ 84 (130)
+..
T Consensus 88 ~~~ 90 (175)
T 1fje_B 88 PKG 90 (175)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
No 205
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.4e-10 Score=73.56 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=46.7
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe--CCeeEEEEecc
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSP 83 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f--~Gr~I~v~~~~ 83 (130)
+||++.| ++||.|.+|.|+.+ ++|++||+|.+.++|++ +++..+ .|+.|.+.++.
T Consensus 20 ~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 20 DELREFF-SQYGDVMDVFIPKP----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp HHHHHHS-TTTSCCCEEECCSS----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCC
T ss_pred HHHHHHH-HHcCCeeEEEEecC----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecC
Confidence 5899999 79999999999875 58999999999999975 455544 99999998874
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.93 E-value=1.4e-09 Score=76.62 Aligned_cols=68 Identities=12% Similarity=0.256 Sum_probs=55.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhcc----C-------CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKY----G-------EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 70 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kf----G-------~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr 70 (130)
+|.++++.-.+ +||++.| ++| | .|.++.+... +|++||+|.+.++|.+|+ .|||.
T Consensus 8 ~V~nLp~~~t~-------~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 8 YVGNIPFGITE-------EAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp EEESCCTTCCH-------HHHHHHH-HHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTC
T ss_pred EEcCCCcccCH-------HHHHHHH-HHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCc
Confidence 45666554332 4788888 688 7 7888887654 799999999999999999 89999
Q ss_pred EeCCeeEEEEecc
Q psy4990 71 WFGGRPVYAELSP 83 (130)
Q Consensus 71 ~f~Gr~I~v~~~~ 83 (130)
.+.|++|.+.+..
T Consensus 74 ~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 74 IFQGQSLKIRRPH 86 (172)
T ss_dssp EETTEECEEECCS
T ss_pred EecCceeeecCCc
Confidence 9999999998864
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.90 E-value=1.6e-09 Score=77.97 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=54.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhcc----C-------CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc
Q psy4990 2 IISNVTDEEMQEHYDNFFEDVFVECEDKY----G-------EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 70 (130)
Q Consensus 2 ~~~~~s~~e~~~~~~~~~eDi~~e~~~kf----G-------~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr 70 (130)
+|.++++.-. .+||++.| ++| | .|.++.+.. .+|++||+|.+.++|.+|+ .|||.
T Consensus 8 ~V~nLp~~~t-------e~~l~~~F-~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 8 YVGNIPFGIT-------EEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp EEESCCTTCC-------HHHHHHHH-HHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred EEcCCCCCCC-------HHHHHHHH-HHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 4556655432 25788888 688 5 677777754 3799999999999999999 89999
Q ss_pred EeCCeeEEEEecc
Q psy4990 71 WFGGRPVYAELSP 83 (130)
Q Consensus 71 ~f~Gr~I~v~~~~ 83 (130)
.+.|++|.+.+..
T Consensus 74 ~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 74 IFQGQSLKIRRPH 86 (198)
T ss_dssp EETTEEEEEECCC
T ss_pred EEcCceEEEeCCC
Confidence 9999999999874
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=1.1e-06 Score=60.96 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=55.9
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecC-hHHHHHHHHHhC--CcEeCCeeEEEEecc---Ccchhhhh
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLN--NRWFGGRPVYAELSP---VTDFREAC 91 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~-~~~A~~Ai~~ln--Gr~f~Gr~I~v~~~~---~~~~~~~~ 91 (130)
.+||++.| ++||+|..|.+..+.. .+||+|.+ ..+|..|++.|| |..++|..++++... +..|+.-.
T Consensus 33 redLke~F-~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~GeeE~~yw~Ki 105 (121)
T 1owx_A 33 REDLHILF-SNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKI 105 (121)
T ss_dssp HHHHHHHT-CSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHHHHHHHHHH
Confidence 46999999 7999999999988642 59999999 799999999995 888999999999883 34555543
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.2e-05 Score=53.80 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=48.5
Q ss_pred HHHHHhhhcc-----CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 21 DVFVECEDKY-----GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 21 Di~~e~~~kf-----G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
-|+... .+| |.|.+|.+..+ .|=+.|+|.+...|.+|.-+|||..|+||+|+|.=.
T Consensus 37 rIr~lv-e~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 37 LICQFL-QEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHH-HHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred HHHHHH-hhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 466777 488 99999999776 245999999999999999999999999999999655
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=0.00011 Score=49.72 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 17 ~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
++++.+++.| ..|+++......+- =..+-|.|.++++|.+|-..|||..|.|+.+++.|..
T Consensus 22 ~lk~~~e~Lf-~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 22 ETRAKFESLF-RTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp THHHHHHHHH-HTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHHHHHH-HhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4556788889 69999999777653 2378999999999999999999999999999999986
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.00039 Score=47.97 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=45.8
Q ss_pred HHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCC-eeEEEEec
Q psy4990 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-RPVYAELS 82 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G-r~I~v~~~ 82 (130)
...|..+| ++||.|.+...+.. .-++.|+|.+..+|++|++ .||+.++| -.|=|..+
T Consensus 37 ~~~VL~~F-~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 37 ASYILLQF-AQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHHHHHHH-HTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHHHHHHH-HhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35788999 69999999987432 4699999999999999998 69999986 44555443
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.81 E-value=0.0012 Score=46.21 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=47.7
Q ss_pred HHHHHHHhhhccCCeeE-EEEecCCC-------------C-CceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEecc
Q psy4990 19 FEDVFVECEDKYGEIEE-MNVCDNLG-------------D-HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83 (130)
Q Consensus 19 ~eDi~~e~~~kfG~I~~-v~i~~~~~-------------~-~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~ 83 (130)
..-|.++| ++||.|.+ +.+.++.. . ....++.|+|.+..+|.+|++ -||+.|+|..|=|..++
T Consensus 20 ~~~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 20 ANQVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 34688999 69999987 32222110 0 135699999999999999997 89999999988887774
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.97 E-value=0.0024 Score=44.15 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCceeEEEEEecChHHHHHHHHHh-CCcEeCCeeEEEEeccC
Q psy4990 44 DHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPV 84 (130)
Q Consensus 44 ~~~~G~~fV~F~~~~~A~~Ai~~l-nGr~f~Gr~I~v~~~~~ 84 (130)
...+|+.+|+|.+.++|.+|+..| ||..++| .+.+.+...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 367899999999999999999999 9999999 999998754
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.91 E-value=0.0074 Score=41.73 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=27.9
Q ss_pred EEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc
Q psy4990 35 EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 70 (130)
Q Consensus 35 ~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr 70 (130)
++.|..+.. .++|++||+|.+.++|.+|++.+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 355555432 57999999999999999999988853
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=91.04 E-value=0.37 Score=32.01 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=32.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 68 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln 68 (130)
.||.+.| +.||.|.==+|... -+||.|.+++.|..|++.++
T Consensus 30 ~DI~~lF-s~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLF-SAFGNIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHH-TTTCSCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHh-hccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 5899999 79996544444433 49999999999999999774
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.04 E-value=0.31 Score=32.45 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 68 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~ln 68 (130)
.||.+.| +.||.|.==+|. +. -+||.|.+++.|..|++.++
T Consensus 20 ~Di~~lF-s~fggv~I~Wid-DT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLF-SAFGNIQISWID-DT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHT-TTSEEEEEEEEE-TT------EEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHH-hccCCEEEEEEc-CC------eEEEEecCHHHHHHHHHhcc
Confidence 5899999 799944322333 32 59999999999999999875
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=85.40 E-value=5.5 Score=25.60 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHhhhccCCeeEEEEecCC---CCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 23 FVECEDKYGEIEEMNVCDNL---GDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 23 ~~e~~~kfG~I~~v~i~~~~---~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
.+.+ +.+.++.-..-.... ..+....+||.|.+.+++..-.+.++|..|
T Consensus 19 ~~~l-~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 19 QEHL-QPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp HHHH-CSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred HHHh-cCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 3444 466665544443321 124568999999999999999999999999
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=80.32 E-value=0.96 Score=37.46 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHH
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~ 65 (130)
.++.+-| ++||+|.++...... .-++-|+|.+.+++..++.
T Consensus 67 ~~l~~y~-~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 67 NKFLKYL-SQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp CHHHHHH-GGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHHHHHH-HhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 5788889 799999999998752 2589999999998886654
No 219
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=77.34 E-value=7.3 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=27.9
Q ss_pred eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 33 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 33 I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
|.++.++.. ..||+||++...++...+++.+.|
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 777877763 589999999999999999988776
No 220
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=69.93 E-value=4.2 Score=26.88 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=28.0
Q ss_pred CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 70 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr 70 (130)
.|.++..+. +.+|++||+=.+..+...|++.+.+-
T Consensus 40 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPE----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECT----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 477776665 46999999999999999998876553
No 221
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.06 E-value=25 Score=23.17 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=33.6
Q ss_pred CCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 31 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 31 G~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
|.|.+|.... +-+.|+|.+.+.|++.++ -.-+.|.|.+|.|.-+
T Consensus 38 G~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 38 GPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred ceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 6899998866 248999999999887765 3356788888888544
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=60.61 E-value=6 Score=25.86 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=29.7
Q ss_pred ceeEEEEEecChHHHHHHHHHhCCcEeCC-----eeEEEEecc
Q psy4990 46 LVGNVYIKFRREEDAEKAVNDLNNRWFGG-----RPVYAELSP 83 (130)
Q Consensus 46 ~~G~~fV~F~~~~~A~~Ai~~lnGr~f~G-----r~I~v~~~~ 83 (130)
.-..|||.|.+.++...-.+.++|..|-. -+..|+|++
T Consensus 52 ~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 52 LYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred cceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 34689999999999999999999999832 233456654
No 223
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=57.18 E-value=9.7 Score=26.13 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=28.8
Q ss_pred eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCc
Q psy4990 33 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 70 (130)
Q Consensus 33 I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr 70 (130)
|.++.++.. ..||+||++...++...+++.+.|-
T Consensus 33 i~~v~vp~~----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 778888753 5799999999999999999988874
No 224
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=57.12 E-value=15 Score=20.62 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q psy4990 5 NVTDEEMQEHYDNFFEDVFVEC 26 (130)
Q Consensus 5 ~~s~~e~~~~~~~~~eDi~~e~ 26 (130)
+++..+++..=.+|.++++.|+
T Consensus 3 ~~~~~dle~~KqEIL~E~RkEl 24 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKEL 24 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 5666666665556666666666
No 225
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=54.26 E-value=8.7 Score=28.25 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.3
Q ss_pred eeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 33 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 33 I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
|.+|.++. +.+|++||+=.+..+...|++.+.+-+-
T Consensus 139 I~Si~~~d----~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQRD----NYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECCT----TSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEecC----CCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 66665554 4789999999999999999999988643
No 226
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=52.41 E-value=6.9 Score=25.46 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=33.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
+..+++++.++.-..|.+-+.+++ | -+...+||.|.+...+.-+ .||+.|
T Consensus 64 ig~~~~~~n~~~s~~i~~~l~~~L----g-------------i~~~riyI~f~d~~~~~~g---~~G~tf 113 (114)
T 3djh_A 64 IGKIGGAQNRSYSKLLCGLLAERL----R-------------ISPDRVYINYYDMNAANVG---WNNSTF 113 (114)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHH----C-------------CCGGGEEEEEEECCGGGEE---ETTEEC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHh----C-------------cCcceEEEEEEECCHHHee---ECCEEC
Confidence 455788777777778888888777 2 2345789999987654433 444444
No 227
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=49.06 E-value=32 Score=28.37 Aligned_cols=42 Identities=19% Similarity=0.428 Sum_probs=32.4
Q ss_pred HHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC
Q psy4990 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69 (130)
Q Consensus 20 eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG 69 (130)
.||.+.| +.||.| .|.-..+ -.+||.|.+.+.|..+++.++.
T Consensus 454 ~~i~~~f-s~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLF-SAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHG-GGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHH-HhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 5889999 799954 3333332 2599999999999999998863
No 228
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=48.51 E-value=12 Score=25.29 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=23.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHH
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKA 63 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~A 63 (130)
+..+++++.+.....|.+-+.+.+ | -+...+||.|.+...+.-+
T Consensus 86 ig~~t~e~n~~~s~~i~~~l~~~L----g-------------i~~~riyI~f~d~~~~~wg 129 (135)
T 3t5s_A 86 IGVISQAKNPSISAAITGCLTQHF----K-------------VKPERVYISFNEAKGHNWG 129 (135)
T ss_dssp CC-----CCHHHHHHHHHHHHHHH----C-------------CCGGGEEEEEEC-------
T ss_pred EEEEeccCCchHHHHHHHHHHHhc----c-------------cCccEEEEEeccccCcccc
Confidence 345677777888888888888777 2 2345699999998766554
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.50 E-value=22 Score=21.08 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=30.6
Q ss_pred CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEec
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~ 82 (130)
.|-.|.|... +.||+-.. ..|..+++.|++..+.|+.+.++..
T Consensus 32 ~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 4666777654 57888776 4588899999999999999988754
No 230
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=42.44 E-value=74 Score=21.21 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=30.5
Q ss_pred cCCeeEEEEecCCCCCceeEEEEE-ecChHHHHHHHHHhC---C--cEeCCeeEEEEeccCcch
Q psy4990 30 YGEIEEMNVCDNLGDHLVGNVYIK-FRREEDAEKAVNDLN---N--RWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 30 fG~I~~v~i~~~~~~~~~G~~fV~-F~~~~~A~~Ai~~ln---G--r~f~Gr~I~v~~~~~~~~ 87 (130)
+=.|.+|.|..+ -....|||. |-+.++...++..|+ | |..-|+.+...+.|.-.|
T Consensus 43 ~vtVt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F 103 (129)
T 2e7g_A 43 NVELSKVSLTPD---FSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVF 103 (129)
T ss_dssp TCCEEEEEECTT---SCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHHTCTTCSCCCCEEE
T ss_pred eeEEEEEEECCC---CcEEEEEEEecCChhhHHHHHHHHHHhHHHHHHHHHhhcCCccCCeEEE
Confidence 457888888775 346788998 655544333443333 3 112333444555555444
No 231
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=39.70 E-value=1.1e+02 Score=22.30 Aligned_cols=67 Identities=12% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhccC-CeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCC-------cEeCCeeE
Q psy4990 6 VTDEEMQEHYDNFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN-------RWFGGRPV 77 (130)
Q Consensus 6 ~s~~e~~~~~~~~~eDi~~e~~~kfG-~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnG-------r~f~Gr~I 77 (130)
..+.++..+|..|++-|.+.. ..-| .+... ...=+-++..+.+.|+.....|-- ..++||+|
T Consensus 12 ~~~~~l~~dl~~F~~ki~~l~-~~Lgldl~~~---------~~DHIalRvn~~~~Ae~~~~~l~~~G~llSen~INGRPI 81 (192)
T 1k4n_A 12 DELQDIASDLPRFIHALDELS-RRLGLNITPL---------TADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPI 81 (192)
T ss_dssp GGGHHHHHHHHHHHHHHHHHH-HHHTCCCTTC---------EEEEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HHhCCCchhc---------cCcEEEEecCCHHHHHHHHHHHHHhchhhhccccCCeeE
Confidence 344566778889999999888 5777 33222 233478888999999888887653 45799998
Q ss_pred EEEec
Q psy4990 78 YAELS 82 (130)
Q Consensus 78 ~v~~~ 82 (130)
..--.
T Consensus 82 ~l~~L 86 (192)
T 1k4n_A 82 CLFKL 86 (192)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 76443
No 232
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=37.49 E-value=44 Score=21.54 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=22.1
Q ss_pred CCeeEEEEecCCCCCceeEEEEEecC-hHHHHHHHHHhC
Q psy4990 31 GEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLN 68 (130)
Q Consensus 31 G~I~~v~i~~~~~~~~~G~~fV~F~~-~~~A~~Ai~~ln 68 (130)
=.|.+|.|..+ -....|||.+-. .++...++..|+
T Consensus 36 vtVt~V~vs~D---l~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 36 VTFSRVELSKD---KRYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp CCEEEEEECTT---SCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCC---CCEEEEEEEeCCChhhHHHHHHHHH
Confidence 46777777765 456789998764 444444444444
No 233
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=36.01 E-value=16 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=28.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHH
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A 60 (130)
+..++++..++....|.+-+.+++ | -+...+||.|.+...+
T Consensus 65 ig~~~~e~~~~l~~~i~~~l~~~L----g-------------i~~~riyI~f~d~~~~ 105 (114)
T 4dh4_A 65 IGGITSSTNCKIAAALSAACERHL----G-------------VPKNRIYTTFTNKSPS 105 (114)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHH----C-------------CCGGGEEEEEEEECGG
T ss_pred EcCCCHHHHHHHHHHHHHHHHHHh----C-------------cCcccEEEEEEeCCHH
Confidence 346788777788888888888777 2 2345688888886543
No 234
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=35.73 E-value=48 Score=20.98 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=23.8
Q ss_pred cCCeeEEEEecCCCCCceeEEEEEecC-hHHHHHHHHHhCC
Q psy4990 30 YGEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLNN 69 (130)
Q Consensus 30 fG~I~~v~i~~~~~~~~~G~~fV~F~~-~~~A~~Ai~~lnG 69 (130)
+=.|.+|.+..+ -....||+.+-. .+++.++++...|
T Consensus 30 ~vtVt~V~vs~D---l~~AkVyvs~~~~~~~~~~~L~~a~g 67 (95)
T 2dyj_A 30 LLTVEAVRLSKD---GSVLSVYVEAFREEEGALRALSRAER 67 (95)
T ss_dssp TCEEEEEEECTT---SSEEEEEEECSSCHHHHHHHHHHTHH
T ss_pred cEEEEEEEECCC---CCEEEEEEEeCCCHHHHHHHHHHhHH
Confidence 346777777665 456789998765 5556666665544
No 235
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=33.73 E-value=51 Score=27.88 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred hccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccC
Q psy4990 28 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 84 (130)
Q Consensus 28 ~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~ 84 (130)
+.+|-|.++++---+.......+++.|.+.++|.+|+..+-..- -.+..+++.+.
T Consensus 369 GTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~--~~psa~El~D~ 423 (658)
T 4bby_A 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQR--CAPASIRLMDN 423 (658)
T ss_dssp TSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTT--CCCSEEEEECH
T ss_pred CcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcC--CCccccccccH
Confidence 56888999988532223456778999999999999998764321 12334455543
No 236
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=31.58 E-value=18 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhccC
Q psy4990 5 NVTDEEMQEHYDNFFEDVFVECEDKYG 31 (130)
Q Consensus 5 ~~s~~e~~~~~~~~~eDi~~e~~~kfG 31 (130)
-+|.+|++.++...++++.+++..||+
T Consensus 13 ~vd~eEl~~~f~~~l~~~~e~~~~KWN 39 (84)
T 1jsu_C 13 PVDHEELTRDLEKHCRDMEEASQRKWN 39 (84)
T ss_dssp CCCHHHHHHHHHHHHTTTTHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478899999999888888888855677
No 237
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=30.06 E-value=77 Score=21.10 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=27.7
Q ss_pred CeeEEEEecCCCCCceeEEEEEecC---hHHHHHHHHHhC---C--cEeCCeeEEEEeccCcch
Q psy4990 32 EIEEMNVCDNLGDHLVGNVYIKFRR---EEDAEKAVNDLN---N--RWFGGRPVYAELSPVTDF 87 (130)
Q Consensus 32 ~I~~v~i~~~~~~~~~G~~fV~F~~---~~~A~~Ai~~ln---G--r~f~Gr~I~v~~~~~~~~ 87 (130)
.|.+|.|..+ -....|||.+-. .++...++..|+ | |..-|+.+...+.|.-.|
T Consensus 36 tVt~V~vS~D---l~~AkVyvs~~g~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F 96 (128)
T 1jos_A 36 TVSDVEVSSD---LSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRF 96 (128)
T ss_dssp EEEEEEECTT---SCEEEEEEEESCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSCCEEEE
T ss_pred EEeEEEECCC---CCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcCCCcCCeEEE
Confidence 4555555554 457889998775 444444444444 3 112344444444454443
No 238
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.38 E-value=87 Score=19.77 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=19.4
Q ss_pred CeeEEEEec-CCCCCceeEEEEEecC
Q psy4990 32 EIEEMNVCD-NLGDHLVGNVYIKFRR 56 (130)
Q Consensus 32 ~I~~v~i~~-~~~~~~~G~~fV~F~~ 56 (130)
+|.+|+|-. ...++.+|++-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 578888854 3457889999999975
No 239
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=25.70 E-value=90 Score=25.32 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=37.5
Q ss_pred hccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEeCCeeEEEEeccCc
Q psy4990 28 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 85 (130)
Q Consensus 28 ~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f~Gr~I~v~~~~~~ 85 (130)
+.+|-|.++++--.+.......+++.|.+.++|.+++..+... .+-.+..+++.+..
T Consensus 212 GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~-~g~~p~a~El~d~~ 268 (476)
T 3pm9_A 212 GTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGE-AAGNLTSFELIAET 268 (476)
T ss_dssp TSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHH-HGGGEEEEEEEEHH
T ss_pred CCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHh-cCCCceEEEecCHH
Confidence 4678899998853222344567889999999999998877321 12345556666543
No 240
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.75 E-value=1.1e+02 Score=19.90 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=19.3
Q ss_pred CeeEEEEec-CCCCCceeEEEEEecC
Q psy4990 32 EIEEMNVCD-NLGDHLVGNVYIKFRR 56 (130)
Q Consensus 32 ~I~~v~i~~-~~~~~~~G~~fV~F~~ 56 (130)
+|.+|+|-. ...++.+|++-|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 578888854 3347889999999975
No 241
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=23.67 E-value=47 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.9
Q ss_pred ceeEEEEEecChH-----HHHHHHHHhCC
Q psy4990 46 LVGNVYIKFRREE-----DAEKAVNDLNN 69 (130)
Q Consensus 46 ~~G~~fV~F~~~~-----~A~~Ai~~lnG 69 (130)
-.|++||++.-.+ ++...++...|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 5799999999887 88889998877
No 242
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.81 E-value=1.2e+02 Score=19.79 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=19.0
Q ss_pred CeeEEEEec-CCCCCceeEEEEEecC
Q psy4990 32 EIEEMNVCD-NLGDHLVGNVYIKFRR 56 (130)
Q Consensus 32 ~I~~v~i~~-~~~~~~~G~~fV~F~~ 56 (130)
+|.+|+|-. ...++.+|+|-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 577788854 3457889999999975
No 243
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=22.75 E-value=1.2e+02 Score=20.15 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=29.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecCh
Q psy4990 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE 57 (130)
Q Consensus 3 ~~~~s~~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~ 57 (130)
+..+++++.++.+..|.+-+.+++ | -+.-.+||.|.+.
T Consensus 86 ig~~~~e~n~~~s~~i~~~l~~~L----g-------------I~~~riyI~f~d~ 123 (133)
T 3fwu_A 86 LGGYGPSEPEKVTSIVTAAITKEC----G-------------IVADRIFVLYFSP 123 (133)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHH----C-------------CCGGGEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh----C-------------cChhhEEEEEEEH
Confidence 456788888888889988888888 2 2234689999987
No 244
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=21.58 E-value=1.5e+02 Score=18.26 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCC---ceeEEEEEecChHH
Q psy4990 15 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDH---LVGNVYIKFRREED 59 (130)
Q Consensus 15 ~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~---~~G~~fV~F~~~~~ 59 (130)
.+++.+.+...- .+.-.|.++.+-.+.++. ..-..+++|++.++
T Consensus 22 ~~~~~~~l~~L~-~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~ 68 (103)
T 2qyc_A 22 FRTVDEYVARMK-RECDGLLLYHFGENVAARSQGYTHATSSAFVDAAA 68 (103)
T ss_dssp HHHHHHHHHHHH-HHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHH
T ss_pred HHHHHHHHHHhh-hcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHH
Confidence 344555555555 467789999987664332 23457778888664
No 245
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=20.87 E-value=30 Score=22.48 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=30.1
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCCceeEEEEEecChHHHHHHHHHhCCcEe
Q psy4990 4 SNVTD-EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 72 (130)
Q Consensus 4 ~~~s~-~e~~~~~~~~~eDi~~e~~~kfG~I~~v~i~~~~~~~~~G~~fV~F~~~~~A~~Ai~~lnGr~f 72 (130)
..+++ ++.++.-..|.+-+.+++ | -+...+||.|.+...+.-+ .||+.|
T Consensus 65 G~~~~~~~n~~~s~~i~~~l~~~L----g-------------i~~~RiyI~f~d~~~~~~G---~nG~tf 114 (117)
T 3kan_A 65 GVVGTAEDNRSHSAHFFEFLTKEL----A-------------LGQDRILIRFFPLESWQIG---KIGTVM 114 (117)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHH----T-------------CCGGGEEEEEEEECGGGCE---ETTEEG
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHh----C-------------cCcCeEEEEEEEcCHHHee---eCCEEe
Confidence 44555 345566667777777666 2 2345789999998755433 455544
Done!