Your job contains 1 sequence.
>psy4990
MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA
EKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKNADPVCTREKAKKKMGVY
EISGVSTSAL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4990
(130 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0017457 - symbol:U2af38 "U2 small nuclear riboprot... 499 9.8e-48 1
UNIPROTKB|Q98SE2 - symbol:U2AF1 "U2snRNP auxiliary factor... 443 8.4e-42 1
UNIPROTKB|A1A4K8 - symbol:U2AF1 "Splicing factor U2AF 35 ... 443 8.4e-42 1
UNIPROTKB|F1PUP0 - symbol:U2AF1 "Uncharacterized protein"... 443 8.4e-42 1
UNIPROTKB|J9P492 - symbol:U2AF1 "Uncharacterized protein"... 443 8.4e-42 1
UNIPROTKB|Q01081 - symbol:U2AF1 "Splicing factor U2AF 35 ... 443 8.4e-42 1
MGI|MGI:98884 - symbol:U2af1 "U2 small nuclear ribonucleo... 443 8.4e-42 1
ZFIN|ZDB-GENE-020419-1 - symbol:u2af1 "U2(RNU2) small nuc... 435 5.9e-41 1
UNIPROTKB|F1PU17 - symbol:U2AF1L4 "Uncharacterized protei... 428 3.3e-40 1
UNIPROTKB|F1RM65 - symbol:U2AF1L4 "Uncharacterized protei... 428 3.3e-40 1
MGI|MGI:2678374 - symbol:U2af1l4 "U2 small nuclear RNA au... 428 3.3e-40 1
RGD|1305600 - symbol:U2af1l4 "U2 small nuclear RNA auxili... 428 3.3e-40 1
UNIPROTKB|Q3T127 - symbol:U2AF1L4 "Splicing factor U2AF 2... 427 4.2e-40 1
UNIPROTKB|Q8WU68 - symbol:U2AF1L4 "Splicing factor U2AF 2... 410 2.6e-38 1
WB|WBGene00006698 - symbol:uaf-2 species:6239 "Caenorhabd... 366 1.2e-33 1
POMBASE|SPAP8A3.06 - symbol:SPAP8A3.06 "U2AF small subuni... 341 5.4e-31 1
ASPGD|ASPL0000060533 - symbol:AN9362 species:162425 "Emer... 306 2.8e-27 1
UNIPROTKB|G4MRL7 - symbol:MGG_09948 "Splicing factor U2AF... 306 2.8e-27 1
DICTYBASE|DDB_G0285077 - symbol:u2af1 "CCHC-type zinc fin... 299 3.0e-26 1
TAIR|locus:2196929 - symbol:ATU2AF35A species:3702 "Arabi... 293 6.6e-26 1
GENEDB_PFALCIPARUM|PF11_0200 - symbol:PF11_0200 "U2 snRNP... 290 1.4e-25 1
UNIPROTKB|Q8IIH4 - symbol:PF11_0200 "U2 snRNP auxiliary f... 290 1.4e-25 1
TAIR|locus:2165447 - symbol:U2AF35B species:3702 "Arabido... 287 2.9e-25 1
CGD|CAL0004873 - symbol:TRY2 species:5476 "Candida albica... 248 3.9e-21 1
UNIPROTKB|Q59LX5 - symbol:UAF21 "Potential spliceosomal U... 248 3.9e-21 1
CGD|CAL0000603 - symbol:orf19.53 species:5476 "Candida al... 214 4.0e-17 1
UNIPROTKB|I3LMZ7 - symbol:LOC100624937 "Uncharacterized p... 173 1.5e-12 1
UNIPROTKB|Q15695 - symbol:ZRSR1 "U2 small nuclear ribonuc... 171 4.1e-12 1
UNIPROTKB|Q15696 - symbol:ZRSR2 "U2 small nuclear ribonuc... 171 4.2e-12 1
MGI|MGI:98885 - symbol:Zrsr1 "zinc finger (CCCH type), RN... 170 4.2e-12 1
RGD|1561824 - symbol:Zrsr1 "zinc finger (CCCH type), RNA ... 170 4.2e-12 1
UNIPROTKB|G3MYL6 - symbol:ZRSR2Y "Uncharacterized protein... 170 4.5e-12 1
TAIR|locus:2012843 - symbol:AT1G10320 species:3702 "Arabi... 173 5.4e-12 1
UNIPROTKB|F1PIC2 - symbol:F1PIC2 "Uncharacterized protein... 168 7.9e-12 1
MGI|MGI:103287 - symbol:Zrsr2 "zinc finger (CCCH type), R... 168 8.2e-12 1
UNIPROTKB|F1N5D0 - symbol:ZRSR2 "Uncharacterized protein"... 168 8.6e-12 1
UNIPROTKB|F1NHR6 - symbol:ZRSR2 "Uncharacterized protein"... 166 1.3e-11 1
UNIPROTKB|I3LF64 - symbol:ZRSR2 "Uncharacterized protein"... 166 1.4e-11 1
RGD|1559763 - symbol:Zrsr2 "zinc finger (CCCH type), RNA ... 166 1.8e-11 1
UNIPROTKB|F1PT19 - symbol:F1PT19 "Uncharacterized protein... 164 1.9e-11 1
ZFIN|ZDB-GENE-030131-1495 - symbol:zrsr2 "zinc finger (CC... 162 6.3e-11 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 148 1.8e-09 1
FB|FBgn0031628 - symbol:CG3294 species:7227 "Drosophila m... 132 6.3e-08 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 130 1.4e-07 1
RGD|1563377 - symbol:Htatsf1 "HIV-1 Tat specific factor 1... 117 5.1e-07 2
FB|FBgn0086683 - symbol:Spf45 "Spf45" species:7227 "Droso... 117 2.2e-06 1
UNIPROTKB|I3LC46 - symbol:HTATSF1 "Uncharacterized protei... 118 4.2e-06 1
ZFIN|ZDB-GENE-040426-1578 - symbol:htatsf1 "HIV TAT speci... 114 5.4e-06 1
MGI|MGI:1919709 - symbol:Htatsf1 "HIV TAT specific factor... 116 6.8e-06 1
UNIPROTKB|F1P1G7 - symbol:HTATSF1 "Uncharacterized protei... 111 1.1e-05 1
UNIPROTKB|E2R8T8 - symbol:HTATSF1 "Uncharacterized protei... 113 1.4e-05 1
UNIPROTKB|O43719 - symbol:HTATSF1 "HIV Tat-specific facto... 113 1.4e-05 1
UNIPROTKB|G3N370 - symbol:HTATSF1 "Uncharacterized protei... 113 1.4e-05 1
UNIPROTKB|J9NZQ1 - symbol:HTATSF1 "Uncharacterized protei... 113 1.4e-05 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 107 4.5e-05 1
UNIPROTKB|A7MB77 - symbol:RBM17 "RBM17 protein" species:9... 104 5.5e-05 1
UNIPROTKB|E2RMQ0 - symbol:RBM17 "Uncharacterized protein"... 104 5.5e-05 1
UNIPROTKB|Q96I25 - symbol:RBM17 "Splicing factor 45" spec... 104 5.5e-05 1
MGI|MGI:1924188 - symbol:Rbm17 "RNA binding motif protein... 104 5.6e-05 1
RGD|1311208 - symbol:Rbm17 "RNA binding motif protein 17"... 104 5.6e-05 1
UNIPROTKB|F1RUL1 - symbol:RBM17 "Uncharacterized protein"... 104 5.6e-05 1
ZFIN|ZDB-GENE-040426-817 - symbol:rbm17 "RNA binding moti... 103 7.5e-05 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 104 7.9e-05 1
TAIR|locus:2181452 - symbol:ELF9 "EARLY FLOWERING 9" spec... 104 8.0e-05 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 103 0.00011 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 102 0.00013 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 102 0.00015 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 102 0.00015 1
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle... 101 0.00015 1
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 102 0.00015 1
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd... 100 0.00020 1
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea... 99 0.00024 1
UNIPROTKB|E1BCC3 - symbol:UHMK1 "Uncharacterized protein"... 98 0.00026 1
UNIPROTKB|E2RFD1 - symbol:UHMK1 "Uncharacterized protein"... 98 0.00026 1
UNIPROTKB|Q8TAS1 - symbol:UHMK1 "Serine/threonine-protein... 98 0.00026 1
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 100 0.00033 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 96 0.00036 1
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 97 0.00037 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 96 0.00045 1
TAIR|locus:2028130 - symbol:DRT111 "DNA-DAMAGE-REPAIR/TOL... 95 0.00049 1
MGI|MGI:1341908 - symbol:Uhmk1 "U2AF homology motif (UHM)... 95 0.00055 1
RGD|2968 - symbol:Uhmk1 "U2AF homology motif (UHM) kinase... 95 0.00055 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 86 0.00057 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 96 0.00058 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 96 0.00058 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 96 0.00059 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 96 0.00059 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 96 0.00059 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 96 0.00059 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 96 0.00059 1
>FB|FBgn0017457 [details] [associations]
symbol:U2af38 "U2 small nuclear riboprotein auxiliary factor
38" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=NAS;TAS] [GO:0008187 "poly-pyrimidine tract
binding" evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007052
EMBL:AE014134 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0000381 GO:GO:0008187
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 KO:K12836 OMA:DRGGNND
EMBL:U67066 EMBL:AY058537 PIR:JC6125 RefSeq:NP_477208.1
UniGene:Dm.4117 ProteinModelPortal:Q94535 SMR:Q94535 DIP:DIP-23299N
IntAct:Q94535 MINT:MINT-311934 STRING:Q94535 PaxDb:Q94535
EnsemblMetazoa:FBtr0078133 EnsemblMetazoa:FBtr0333408 GeneID:33201
KEGG:dme:Dmel_CG3582 CTD:33201 FlyBase:FBgn0017457
InParanoid:Q94535 OrthoDB:EOG48GTKF PhylomeDB:Q94535 ChiTaRS:U2af38
GenomeRNAi:33201 NextBio:782394 Bgee:Q94535 GermOnline:CG3582
Uniprot:Q94535
Length = 264
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 88/96 (91%), Positives = 93/96 (96%)
Query: 2 IISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAE 61
+++NV+DEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR E DAE
Sbjct: 67 LVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAE 126
Query: 62 KAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
KA NDLNNRWFGGRPVY+ELSPVTDFREACCRQYEM
Sbjct: 127 KAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEM 162
>UNIPROTKB|Q98SE2 [details] [associations]
symbol:U2AF1 "U2snRNP auxiliary factor small subunit"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0071013 HSSP:Q01081 PANTHER:PTHR12620 CTD:7307
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OMA:DRGGNND OrthoDB:EOG4MSD07
EMBL:AADN02010856 EMBL:AADN02010857 EMBL:AJ291762 EMBL:AJ291763
EMBL:AJ291764 IPI:IPI00603228 RefSeq:NP_989986.2 UniGene:Gga.4951
SMR:Q98SE2 STRING:Q98SE2 Ensembl:ENSGALT00000026115 GeneID:395370
KEGG:gga:395370 InParanoid:Q98SE2 NextBio:20815454 Uniprot:Q98SE2
Length = 237
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>UNIPROTKB|A1A4K8 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050733 "RS domain binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0071013 PANTHER:PTHR12620 EMBL:BC126638 IPI:IPI00695600
RefSeq:NP_001073737.1 UniGene:Bt.23539 ProteinModelPortal:A1A4K8
SMR:A1A4K8 STRING:A1A4K8 PRIDE:A1A4K8 Ensembl:ENSBTAT00000015465
GeneID:512680 KEGG:bta:512680 CTD:7307 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 InParanoid:A1A4K8 KO:K12836 OMA:DRGGNND
OrthoDB:EOG4MSD07 NextBio:20870505 Uniprot:A1A4K8
Length = 237
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>UNIPROTKB|F1PUP0 [details] [associations]
symbol:U2AF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
GeneTree:ENSGT00530000063193 KO:K12836 EMBL:AAEX03016606
RefSeq:XP_003640135.1 ProteinModelPortal:F1PUP0
Ensembl:ENSCAFT00000016814 GeneID:478422 KEGG:cfa:478422
Uniprot:F1PUP0
Length = 240
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>UNIPROTKB|J9P492 [details] [associations]
symbol:U2AF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
GeneTree:ENSGT00530000063193 KO:K12836 OMA:DRGGNND
EMBL:AAEX03016606 GeneID:478422 KEGG:cfa:478422
RefSeq:XP_003640134.1 ProteinModelPortal:J9P492
Ensembl:ENSCAFT00000047884 Uniprot:J9P492
Length = 240
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>UNIPROTKB|Q01081 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0050733 "RS domain
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0015030 "Cajal body" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471079 GO:GO:0003723
GO:GO:0015030 GO:GO:0006406 GO:GO:0000398 GO:GO:0071013
Reactome:REACT_1788 PANTHER:PTHR12620 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 EMBL:AP001631 EMBL:AP001748 CTD:7307
eggNOG:NOG323920 HOGENOM:HOG000178619 HOVERGEN:HBG054605 KO:K12836
OMA:DRGGNND OrthoDB:EOG4MSD07 EMBL:M96982 EMBL:AJ627978
EMBL:AF370386 EMBL:BC001177 EMBL:BC001923 IPI:IPI00005613
PIR:A46179 RefSeq:NP_001020374.1 RefSeq:NP_001020375.1
RefSeq:NP_006749.1 UniGene:Hs.365116 PDB:1JMT PDBsum:1JMT
ProteinModelPortal:Q01081 SMR:Q01081 DIP:DIP-1108N IntAct:Q01081
MINT:MINT-3024108 STRING:Q01081 PhosphoSite:Q01081 DMDM:267187
PaxDb:Q01081 PeptideAtlas:Q01081 PRIDE:Q01081 DNASU:7307
Ensembl:ENST00000291552 Ensembl:ENST00000380276
Ensembl:ENST00000398137 Ensembl:ENST00000459639
Ensembl:ENST00000464750 GeneID:7307 KEGG:hsa:7307 UCSC:uc002zcy.1
GeneCards:GC21M044513 HGNC:HGNC:12453 HPA:HPA044833 MIM:191317
neXtProt:NX_Q01081 PharmGKB:PA37103 PhylomeDB:Q01081 ChiTaRS:U2AF1
EvolutionaryTrace:Q01081 GenomeRNAi:7307 NextBio:28572
ArrayExpress:Q01081 Bgee:Q01081 CleanEx:HS_U2AF1
Genevestigator:Q01081 GermOnline:ENSG00000160201 Uniprot:Q01081
Length = 240
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>MGI|MGI:98884 [details] [associations]
symbol:U2af1 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
MGI:MGI:98884 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OrthoDB:EOG4MSD07 ChiTaRS:U2AF1
EMBL:AK008332 EMBL:AK012849 EMBL:AK088979 EMBL:AK150872
EMBL:BC002184 IPI:IPI00318548 RefSeq:NP_001157241.1
RefSeq:NP_077149.2 UniGene:Mm.379289 ProteinModelPortal:Q9D883
SMR:Q9D883 STRING:Q9D883 PaxDb:Q9D883 PRIDE:Q9D883
Ensembl:ENSMUST00000014684 GeneID:108121 KEGG:mmu:108121
InParanoid:Q9D883 NextBio:360106 Bgee:Q9D883 Genevestigator:Q9D883
GermOnline:ENSMUSG00000061613 Uniprot:Q9D883
Length = 239
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 78/92 (84%), Positives = 86/92 (93%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV
Sbjct: 69 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 128
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
DLNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 129 DLNNRWFNGQPIHAELSPVTDFREACCRQYEM 160
>ZFIN|ZDB-GENE-020419-1 [details] [associations]
symbol:u2af1 "U2(RNU2) small nuclear RNA auxiliary
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 ZFIN:ZDB-GENE-020419-1
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620 eggNOG:NOG323920
HOGENOM:HOG000178619 HOVERGEN:HBG054605 OrthoDB:EOG4MSD07
EMBL:BC098601 IPI:IPI00501023 UniGene:Dr.18312
ProteinModelPortal:Q4G0A1 SMR:Q4G0A1 STRING:Q4G0A1
InParanoid:Q4G0A1 ArrayExpress:Q4G0A1 Uniprot:Q4G0A1
Length = 250
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 76/95 (80%), Positives = 88/95 (92%)
Query: 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 62
++ V+D EM+EHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEK
Sbjct: 65 LNAVSDVEMREHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEK 124
Query: 63 AVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
AV +LNNRWF G+P++AELSPVTDFREACCRQYEM
Sbjct: 125 AVINLNNRWFNGQPIHAELSPVTDFREACCRQYEM 159
>UNIPROTKB|F1PU17 [details] [associations]
symbol:U2AF1L4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:SERHDRD EMBL:AAEX03001009 ProteinModelPortal:F1PU17
Ensembl:ENSCAFT00000011030 Uniprot:F1PU17
Length = 220
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 AELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>UNIPROTKB|F1RM65 [details] [associations]
symbol:U2AF1L4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:GQAVHGE
EMBL:FP243365 Ensembl:ENSSSCT00000003200 ArrayExpress:F1RM65
Uniprot:F1RM65
Length = 232
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 AELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>MGI|MGI:2678374 [details] [associations]
symbol:U2af1l4 "U2 small nuclear RNA auxiliary factor 1-like
4" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 MGI:MGI:2678374 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HSSP:Q01081 PANTHER:PTHR12620 CleanEx:MM_U2AF1L4 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OrthoDB:EOG4MSD07 CTD:199746
OMA:SERHDRD EMBL:AF419339 EMBL:AF419340 EMBL:AK160974 EMBL:BC060972
IPI:IPI00221628 RefSeq:NP_739566.1 UniGene:Mm.34790
ProteinModelPortal:Q8BGJ9 SMR:Q8BGJ9 IntAct:Q8BGJ9 STRING:Q8BGJ9
PhosphoSite:Q8BGJ9 PaxDb:Q8BGJ9 PRIDE:Q8BGJ9
Ensembl:ENSMUST00000043273 Ensembl:ENSMUST00000167042
Ensembl:ENSMUST00000171912 GeneID:233073 KEGG:mmu:233073
UCSC:uc009gfa.1 InParanoid:Q8BGJ9 NextBio:381535 Bgee:Q8BGJ9
Genevestigator:Q8BGJ9 Uniprot:Q8BGJ9
Length = 220
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 AELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>RGD|1305600 [details] [associations]
symbol:U2af1l4 "U2 small nuclear RNA auxiliary factor 1-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305600 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 HSSP:Q01081 PANTHER:PTHR12620 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 CTD:199746 OMA:GQAVHGE EMBL:AY325237
EMBL:AY325238 IPI:IPI00365692 IPI:IPI00382197 RefSeq:NP_001008775.1
UniGene:Rn.145185 ProteinModelPortal:Q7TP17 SMR:Q7TP17
STRING:Q7TP17 PhosphoSite:Q7TP17 PRIDE:Q7TP17
Ensembl:ENSRNOT00000038154 Ensembl:ENSRNOT00000046569 GeneID:361542
KEGG:rno:361542 UCSC:RGD:1305600 NextBio:676661
Genevestigator:Q7TP17 Uniprot:Q7TP17
Length = 220
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 AELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>UNIPROTKB|Q3T127 [details] [associations]
symbol:U2AF1L4 "Splicing factor U2AF 26 kDa subunit"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 PANTHER:PTHR12620 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 OrthoDB:EOG4MSD07 EMBL:BC102151 IPI:IPI00689642
RefSeq:NP_001029950.1 UniGene:Bt.13810 ProteinModelPortal:Q3T127
SMR:Q3T127 PRIDE:Q3T127 Ensembl:ENSBTAT00000032279 GeneID:615198
KEGG:bta:615198 CTD:199746 InParanoid:Q3T127 OMA:SERHDRD
NextBio:20899497 Uniprot:Q3T127
Length = 220
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV
Sbjct: 68 HVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+LNNRWF G+ V+AELSPVTDFRE+CCRQYEM
Sbjct: 128 VELNNRWFNGQAVHAELSPVTDFRESCCRQYEM 160
>UNIPROTKB|Q8WU68 [details] [associations]
symbol:U2AF1L4 "Splicing factor U2AF 26 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HSSP:Q01081 PANTHER:PTHR12620 EMBL:AD000671 CleanEx:HS_U2AF1L4
HOGENOM:HOG000178619 HOVERGEN:HBG054605 CTD:199746 EMBL:AY569437
EMBL:BC021186 IPI:IPI00102851 IPI:IPI00871981 IPI:IPI00872091
RefSeq:NP_001035515.1 RefSeq:NP_659424.2 UniGene:Hs.351558
ProteinModelPortal:Q8WU68 SMR:Q8WU68 IntAct:Q8WU68 STRING:Q8WU68
PhosphoSite:Q8WU68 DMDM:160358766 PaxDb:Q8WU68 PRIDE:Q8WU68
Ensembl:ENST00000292879 Ensembl:ENST00000378975
Ensembl:ENST00000412391 GeneID:199746 KEGG:hsa:199746
UCSC:uc002obe.3 UCSC:uc002obf.3 GeneCards:GC19M036233
HGNC:HGNC:23020 HPA:HPA046378 MIM:601080 neXtProt:NX_Q8WU68
PharmGKB:PA164742763 eggNOG:NOG252826 OMA:GQAVHGE GenomeRNAi:199746
NextBio:89722 ArrayExpress:Q8WU68 Bgee:Q8WU68 Genevestigator:Q8WU68
Uniprot:Q8WU68
Length = 220
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 71/93 (76%), Positives = 85/93 (91%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V+D E+QEHYD+FFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREED E+AV
Sbjct: 68 HVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAV 127
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
+L+NRWF G+ V+ ELSPVTDFRE+CCRQYEM
Sbjct: 128 AELSNRWFNGQAVHGELSPVTDFRESCCRQYEM 160
>WB|WBGene00006698 [details] [associations]
symbol:uaf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0030628 "pre-mRNA
3'-splice site binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0018996 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0040035 HSSP:Q01081 PANTHER:PTHR12620 GO:GO:0030628
EMBL:AL117204 eggNOG:NOG323920 GeneTree:ENSGT00530000063193
HOGENOM:HOG000178619 KO:K12836 PIR:T31503 RefSeq:NP_503036.1
ProteinModelPortal:Q9U2U0 SMR:Q9U2U0 DIP:DIP-26717N IntAct:Q9U2U0
MINT:MINT-1068324 STRING:Q9U2U0 PaxDb:Q9U2U0
EnsemblMetazoa:Y116A8C.35.1 EnsemblMetazoa:Y116A8C.35.2
GeneID:178489 KEGG:cel:CELE_Y116A8C.35 UCSC:Y116A8C.35 CTD:178489
WormBase:Y116A8C.35 InParanoid:Q9U2U0 OMA:XAVSDVE NextBio:901340
Uniprot:Q9U2U0
Length = 285
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 63/95 (66%), Positives = 83/95 (87%)
Query: 8 DEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 67
D+E Q ++D+F+E+VFVE E KYGE+EE+NVC+N+G+H+VGNVY+KF +EEDAEKA NDL
Sbjct: 81 DQE-QRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDL 139
Query: 68 NNRWFGGRPVYAELSPVTDFREACCRQYEMVLETK 102
NNRWF G+P+YAEL PVTDFRE+ CRQ+E+ +K
Sbjct: 140 NNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSK 174
>POMBASE|SPAP8A3.06 [details] [associations]
symbol:SPAP8A3.06 "U2AF small subunit, U2AF-23"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=IDA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IDA]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 PomBase:SPAP8A3.06 GO:GO:0005829
EMBL:CU329670 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000243 GO:GO:0000349
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0045292 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 EMBL:U48234 PIR:T39243
RefSeq:NP_594945.1 ProteinModelPortal:Q09176 SMR:Q09176
IntAct:Q09176 STRING:Q09176 EnsemblFungi:SPAP8A3.06.1
GeneID:2542482 KEGG:spo:SPAP8A3.06 OMA:HETSECQ OrthoDB:EOG476P88
NextBio:20803537 Uniprot:Q09176
Length = 216
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 64/110 (58%), Positives = 83/110 (75%)
Query: 7 TDEEMQEHYDNFFEDVFVECE-DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
T E+ E +D F+ED+F CE KYGE+E++ VCDN+GDHLVGNVY++F+ EE A+ A++
Sbjct: 65 TQRELAEQFDAFYEDMF--CEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAID 122
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKNADPVCTREKAKK 115
DLN+RW+ RPVYAELSPVTDFREACCRQ+E E + +C AKK
Sbjct: 123 DLNSRWYSQRPVYAELSPVTDFREACCRQHE-TSECQRGG-LCNFMHAKK 170
>ASPGD|ASPL0000060533 [details] [associations]
symbol:AN9362 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0000166
EMBL:BN001308 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AACD01000172 PANTHER:PTHR12620 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 OrthoDB:EOG476P88 OMA:NDNGRKG
RefSeq:XP_682631.1 ProteinModelPortal:Q5AQR8 STRING:Q5AQR8
EnsemblFungi:CADANIAT00001149 GeneID:2867825 KEGG:ani:AN9362.2
Uniprot:Q5AQR8
Length = 209
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 54/91 (59%), Positives = 70/91 (76%)
Query: 4 SNVTDEEMQEHYDNFFEDVFVE-CEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 62
S + ++Q H+D F+EDV+ E C KYGE+EE+ VCDN DHL+GNVY +F+ EEDA+
Sbjct: 61 SKMNPSQLQNHFDAFYEDVWCEMC--KYGELEELVVCDNNNDHLIGNVYARFKYEEDAQA 118
Query: 63 AVNDLNNRWFGGRPVYAELSPVTDFREACCR 93
A + LN+RW+ RP+Y ELSPVTDFREACCR
Sbjct: 119 ACDALNSRWYAARPIYCELSPVTDFREACCR 149
>UNIPROTKB|G4MRL7 [details] [associations]
symbol:MGG_09948 "Splicing factor U2AF 23 kDa subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CM001231 PANTHER:PTHR12620 KO:K12836 RefSeq:XP_003710052.1
ProteinModelPortal:G4MRL7 EnsemblFungi:MGG_09948T0 GeneID:2680918
KEGG:mgr:MGG_09948 Uniprot:G4MRL7
Length = 209
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 52/91 (57%), Positives = 72/91 (79%)
Query: 4 SNVTDEEMQEHYDNFFEDVFVE-CEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 62
+N+ ++Q H+D F+ED++ E C KYGE+EE+ VCDN DHL+GNVY +F+ E+ A+K
Sbjct: 61 NNMNASQLQNHFDAFYEDLWCELC--KYGELEELVVCDNNNDHLIGNVYARFKYEDSAQK 118
Query: 63 AVNDLNNRWFGGRPVYAELSPVTDFREACCR 93
A ++LN+RW+ RP+Y ELSPVTDFREACCR
Sbjct: 119 ACDELNSRWYAARPIYCELSPVTDFREACCR 149
>DICTYBASE|DDB_G0285077 [details] [associations]
symbol:u2af1 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 dictyBase:DDB_G0285077
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 EMBL:AAFI02000073 GO:GO:0003723 GO:GO:0000398
GO:GO:0005686 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
RefSeq:XP_639991.1 ProteinModelPortal:Q54NS6
EnsemblProtists:DDB0233354 GeneID:8624909 KEGG:ddi:DDB_G0285077
InParanoid:Q54NS6 OMA:DFTEARC Uniprot:Q54NS6
Length = 471
Score = 299 (110.3 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 49/93 (52%), Positives = 75/93 (80%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
N++D E+Q+H+D F+ED++ E KYG+++ +NVC NLGDHLVGNVY+K+++E+DA +++
Sbjct: 70 NLSDAELQQHFDEFYEDIY-EGLAKYGQVDLLNVCANLGDHLVGNVYVKYQKEDDANESI 128
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
L R++ GRP+ +E SPVTDF EA CRQY++
Sbjct: 129 KGLKGRFYDGRPIISEFSPVTDFTEARCRQYDI 161
>TAIR|locus:2196929 [details] [associations]
symbol:ATU2AF35A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048573
"photoperiodism, flowering" evidence=RCA;IMP] [GO:0007067 "mitosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642
PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012375 GO:GO:0048573 HSSP:Q01081 PANTHER:PTHR12620
EMBL:AC005916 eggNOG:NOG323920 HOGENOM:HOG000178619 KO:K12836
EMBL:AF409139 EMBL:AF344324 EMBL:AY065202 EMBL:AY090343
EMBL:AY096507 EMBL:AY122894 EMBL:AY088540 IPI:IPI00530007
RefSeq:NP_174086.1 UniGene:At.20200 UniGene:At.63995
UniGene:At.67851 ProteinModelPortal:Q9S709 SMR:Q9S709 STRING:Q9S709
PaxDb:Q9S709 PRIDE:Q9S709 EnsemblPlants:AT1G27650.1 GeneID:839657
KEGG:ath:AT1G27650 GeneFarm:4543 TAIR:At1g27650 InParanoid:Q9S709
OMA:NDNGRKG PhylomeDB:Q9S709 ProtClustDB:CLSN2686618
Genevestigator:Q9S709 Uniprot:Q9S709
Length = 296
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 49/87 (56%), Positives = 69/87 (79%)
Query: 10 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69
++QEH+++FFED+F E K+GEIE +N+CDNL DH++GNVY++F+ E+ A A+ L
Sbjct: 73 KIQEHFEDFFEDLFEEL-GKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQG 131
Query: 70 RWFGGRPVYAELSPVTDFREACCRQYE 96
R++ GRP+ A+ SPVTDFREA CRQYE
Sbjct: 132 RFYSGRPIIADFSPVTDFREATCRQYE 158
>GENEDB_PFALCIPARUM|PF11_0200 [details] [associations]
symbol:PF11_0200 "U2 snRNP auxiliary factor,
small subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GO:GO:0005686 HSSP:Q01081 PANTHER:PTHR12620
EMBL:AE014186 HOGENOM:HOG000178619 KO:K12836 RefSeq:XP_001347871.1
ProteinModelPortal:Q8IIH4 IntAct:Q8IIH4 MINT:MINT-1572548
EnsemblProtists:PF11_0200:mRNA GeneID:810747 KEGG:pfa:PF11_0200
EuPathDB:PlasmoDB:PF3D7_1119300 OMA:DFREARC ProtClustDB:CLSZ2733259
Uniprot:Q8IIH4
Length = 294
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 53/95 (55%), Positives = 73/95 (76%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
M+ V D+ +H++ F+E+VF E KYGEIE+M VCDN+GDH++GNVYIK+ E+ A
Sbjct: 66 MVEDEVLDKAA-DHFEEFYEEVFDELM-KYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYA 123
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQY 95
EKAVN+LN R++ G+P+ E +PVTDFREA CRQ+
Sbjct: 124 EKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQF 158
>UNIPROTKB|Q8IIH4 [details] [associations]
symbol:PF11_0200 "U2 snRNP auxiliary factor, small subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005686 "U2
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0005686 HSSP:Q01081 PANTHER:PTHR12620 EMBL:AE014186
HOGENOM:HOG000178619 KO:K12836 RefSeq:XP_001347871.1
ProteinModelPortal:Q8IIH4 IntAct:Q8IIH4 MINT:MINT-1572548
EnsemblProtists:PF11_0200:mRNA GeneID:810747 KEGG:pfa:PF11_0200
EuPathDB:PlasmoDB:PF3D7_1119300 OMA:DFREARC ProtClustDB:CLSZ2733259
Uniprot:Q8IIH4
Length = 294
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 53/95 (55%), Positives = 73/95 (76%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
M+ V D+ +H++ F+E+VF E KYGEIE+M VCDN+GDH++GNVYIK+ E+ A
Sbjct: 66 MVEDEVLDKAA-DHFEEFYEEVFDELM-KYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYA 123
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQY 95
EKAVN+LN R++ G+P+ E +PVTDFREA CRQ+
Sbjct: 124 EKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQF 158
>TAIR|locus:2165447 [details] [associations]
symbol:U2AF35B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048573
"photoperiodism, flowering" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048573
EMBL:AB008264 EMBL:AB007647 HSSP:Q01081 PANTHER:PTHR12620
UniGene:At.8456 eggNOG:NOG323920 HOGENOM:HOG000178619 KO:K12836
OMA:SERHDRD ProtClustDB:CLSN2686618 EMBL:AF409140 EMBL:AY136436
EMBL:BT000219 IPI:IPI00531951 RefSeq:NP_199096.1 RefSeq:NP_974870.1
UniGene:At.25814 ProteinModelPortal:Q9FMY5 SMR:Q9FMY5 IntAct:Q9FMY5
STRING:Q9FMY5 PaxDb:Q9FMY5 PRIDE:Q9FMY5 EnsemblPlants:AT5G42820.1
EnsemblPlants:AT5G42820.2 GeneID:834293 KEGG:ath:AT5G42820
GeneFarm:4540 TAIR:At5g42820 InParanoid:Q9FMY5 PhylomeDB:Q9FMY5
Genevestigator:Q9FMY5 Uniprot:Q9FMY5
Length = 283
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 47/87 (54%), Positives = 69/87 (79%)
Query: 10 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 69
++Q+H+++F+ED+F E +K+GE+E +NVCDNL DH++GNVY+ F+ E+ A A+ L
Sbjct: 73 KIQDHFEDFYEDIFEEL-NKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQG 131
Query: 70 RWFGGRPVYAELSPVTDFREACCRQYE 96
R++ GRP+ A+ SPVTDFREA CRQYE
Sbjct: 132 RFYSGRPIIADFSPVTDFREATCRQYE 158
>CGD|CAL0004873 [details] [associations]
symbol:TRY2 species:5476 "Candida albicans" [GO:0044011
"single-species biofilm formation on inanimate substrate"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0010811 "positive
regulation of cell-substrate adhesion" evidence=IMP] [GO:1900189
"positive regulation of cell adhesion involved in single-species
biofilm formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 CGD:CAL0004873 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006357 GO:GO:0003723 GO:GO:0010811 GO:GO:1900189
GO:GO:0044011 EMBL:AACQ01000243 EMBL:AACQ01000242 PANTHER:PTHR12620
eggNOG:NOG323920 KO:K12836 RefSeq:XP_710731.1 RefSeq:XP_710740.1
ProteinModelPortal:Q59LX5 GeneID:3647660 GeneID:3647670
KEGG:cal:CaO19.11544 KEGG:cal:CaO19.4062 Uniprot:Q59LX5
Length = 371
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
T + Q+ +D FF+D+FV K G+I ++ VC+N +HL GNVY+ F EDA A
Sbjct: 203 TISQSQKDFDQFFQDIFVHIS-KLGQIRDIAVCENENNHLAGNVYVMFESAEDAYNANLQ 261
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQY 95
LN WF G+PVY++LSPV DF +ACC +Y
Sbjct: 262 LNQEWFNGKPVYSDLSPVNDFNDACCEEY 290
>UNIPROTKB|Q59LX5 [details] [associations]
symbol:UAF21 "Potential spliceosomal U2AF small subunit"
species:237561 "Candida albicans SC5314" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0010811 "positive regulation of cell-substrate adhesion"
evidence=IMP] [GO:0044011 "single-species biofilm formation on
inanimate substrate" evidence=IMP] [GO:1900189 "positive regulation
of cell adhesion involved in single-species biofilm formation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642
PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
CGD:CAL0004873 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0003723
GO:GO:0010811 GO:GO:1900189 GO:GO:0044011 EMBL:AACQ01000243
EMBL:AACQ01000242 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
RefSeq:XP_710731.1 RefSeq:XP_710740.1 ProteinModelPortal:Q59LX5
GeneID:3647660 GeneID:3647670 KEGG:cal:CaO19.11544
KEGG:cal:CaO19.4062 Uniprot:Q59LX5
Length = 371
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
T + Q+ +D FF+D+FV K G+I ++ VC+N +HL GNVY+ F EDA A
Sbjct: 203 TISQSQKDFDQFFQDIFVHIS-KLGQIRDIAVCENENNHLAGNVYVMFESAEDAYNANLQ 261
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQY 95
LN WF G+PVY++LSPV DF +ACC +Y
Sbjct: 262 LNQEWFNGKPVYSDLSPVNDFNDACCEEY 290
>CGD|CAL0000603 [details] [associations]
symbol:orf19.53 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IEA] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 PRINTS:PR01848
PROSITE:PS50103 SMART:SM00356 CGD:CAL0000603 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 EMBL:AACQ01000232 EMBL:AACQ01000231
eggNOG:NOG323920 RefSeq:XP_710852.1 RefSeq:XP_710864.1
ProteinModelPortal:Q59MA7 GeneID:3647530 GeneID:3647542
KEGG:cal:CaO19.53 KEGG:cal:CaO19.7714 Uniprot:Q59MA7
Length = 377
Score = 214 (80.4 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 41/91 (45%), Positives = 61/91 (67%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
+TDE++Q+ +D F++D+FV K G+I +M VC+N +HL G+VYIKF DA A
Sbjct: 209 LTDEQIQKDFDLFYQDIFVHVA-KLGQINDMAVCEN-ENHLSGHVYIKFNDYNDAIAANL 266
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYE 96
LN W+ G+PVY+ELSPV +A C+ ++
Sbjct: 267 QLNQEWYNGKPVYSELSPVNILADAHCKSWD 297
>UNIPROTKB|I3LMZ7 [details] [associations]
symbol:LOC100624937 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 EMBL:FP565155
Ensembl:ENSSSCT00000024533 OMA:VEREACS Uniprot:I3LMZ7
Length = 385
Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/91 (34%), Positives = 58/91 (63%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F++DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 189 SEEETYQQFLDFYDDVLPEFKN-VGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 247
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E+ PVT ++ A C +E+
Sbjct: 248 FNGRWYAGRQLQCEICPVTQWKMAICGLFEI 278
>UNIPROTKB|Q15695 [details] [associations]
symbol:ZRSR1 "U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit-related protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG304335 PANTHER:PTHR12620 UniGene:Hs.637001
HOVERGEN:HBG054605 EMBL:D49676 EMBL:U51224 EMBL:AK313576
IPI:IPI00018952 ProteinModelPortal:Q15695 SMR:Q15695 STRING:Q15695
PhosphoSite:Q15695 DMDM:2833265 PaxDb:Q15695 PRIDE:Q15695
Ensembl:ENST00000391338 UCSC:uc021ycm.1 GeneCards:GC05P112228
HGNC:HGNC:12456 HPA:HPA047500 MIM:601079 neXtProt:NX_Q15695
PharmGKB:PA37106 HOGENOM:HOG000049279 InParanoid:Q15695 OMA:HSSKSHE
OrthoDB:EOG4CNQRM PhylomeDB:Q15695 Genevestigator:Q15695
GermOnline:ENSG00000174044 Uniprot:Q15695
Length = 479
Score = 171 (65.3 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 32/91 (35%), Positives = 57/91 (62%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 233 SEEETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 291
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 292 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 322
>UNIPROTKB|Q15696 [details] [associations]
symbol:ZRSR2 "U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit-related protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030628 "pre-mRNA 3'-splice
site binding" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0000245 "spliceosomal complex assembly"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IC] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000245 eggNOG:NOG304335
PANTHER:PTHR12620 GO:GO:0005689 GO:GO:0030628 HOVERGEN:HBG054605
HPA:HPA047500 HOGENOM:HOG000049279 OrthoDB:EOG4CNQRM EMBL:D49677
EMBL:AC004106 EMBL:AC096510 EMBL:BC113454 EMBL:BC113480
IPI:IPI00018954 RefSeq:NP_005080.1 UniGene:Hs.171909
ProteinModelPortal:Q15696 SMR:Q15696 STRING:Q15696
PhosphoSite:Q15696 DMDM:2833266 PaxDb:Q15696 PRIDE:Q15696
DNASU:8233 Ensembl:ENST00000307771 GeneID:8233 KEGG:hsa:8233
UCSC:uc004cxg.4 CTD:8233 GeneCards:GC0XP015808 H-InvDB:HIX0017758
HGNC:HGNC:23019 MIM:300028 neXtProt:NX_Q15696 PharmGKB:PA162410930
InParanoid:Q15696 OMA:EDAFIEE PhylomeDB:Q15696 ChiTaRS:ZRSR2
GenomeRNAi:8233 NextBio:30981 ArrayExpress:Q15696 Bgee:Q15696
CleanEx:HS_ZRSR2 Genevestigator:Q15696 GermOnline:ENSG00000169249
Uniprot:Q15696
Length = 482
Score = 171 (65.3 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 32/91 (35%), Positives = 57/91 (62%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 228 SEEETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 286
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 287 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 317
>MGI|MGI:98885 [details] [associations]
symbol:Zrsr1 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 MGI:MGI:98885 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG304335 PANTHER:PTHR12620
CleanEx:MM_SP2 HOVERGEN:HBG054605 HOGENOM:HOG000049279
OrthoDB:EOG4CNQRM EMBL:D17407 EMBL:S69507 EMBL:D26474
IPI:IPI00137872 PIR:S41485 RefSeq:NP_035793.1 UniGene:Mm.29542
ProteinModelPortal:Q64707 SMR:Q64707 PhosphoSite:Q64707
PRIDE:Q64707 Ensembl:ENSMUST00000049506 GeneID:22183 KEGG:mmu:22183
CTD:7310 InParanoid:Q64707 OMA:AENERIW NextBio:302139 Bgee:Q64707
Genevestigator:Q64707 GermOnline:ENSMUSG00000044068 Uniprot:Q64707
Length = 428
Score = 170 (64.9 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 32/91 (35%), Positives = 56/91 (61%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+ DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 219 SEEETYQQFLDFYHDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 277
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +EM
Sbjct: 278 FNGRWYAGRQLQCEFCPVTRWKVAICGLFEM 308
>RGD|1561824 [details] [associations]
symbol:Zrsr1 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 1" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 RGD:1561824 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG304335 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
HOVERGEN:HBG054605 HOGENOM:HOG000049279 OrthoDB:EOG4CNQRM CTD:7310
OMA:EDAFIEE EMBL:BC086322 IPI:IPI00205826 RefSeq:NP_001017504.1
UniGene:Rn.204453 Ensembl:ENSRNOT00000012767 GeneID:498425
KEGG:rno:498425 UCSC:RGD:1561824 InParanoid:Q5RK33 NextBio:699756
Genevestigator:Q5RK33 Uniprot:Q5RK33
Length = 428
Score = 170 (64.9 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 32/91 (35%), Positives = 56/91 (61%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+ DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 220 SEEETYQQFLDFYHDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 278
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +EM
Sbjct: 279 FNGRWYAGRQLQCEFCPVTRWKVAICGLFEM 309
>UNIPROTKB|G3MYL6 [details] [associations]
symbol:ZRSR2Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 EMBL:DAAA02075512
Ensembl:ENSBTAT00000066104 Uniprot:G3MYL6
Length = 439
Score = 170 (64.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 31/91 (34%), Positives = 57/91 (62%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE+ + + +F++DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 215 SEEEIYQQFLDFYDDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 273
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT + A C +E+
Sbjct: 274 FNGRWYAGRQLQCEFCPVTQWNMAICGLFEI 304
>TAIR|locus:2012843 [details] [associations]
symbol:AT1G10320 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC005489 EMBL:AK226684 IPI:IPI00524917 RefSeq:NP_172503.1
UniGene:At.51551 HSSP:Q01081 ProteinModelPortal:Q9SY74 SMR:Q9SY74
PRIDE:Q9SY74 EnsemblPlants:AT1G10320.1 GeneID:837571
KEGG:ath:AT1G10320 GeneFarm:4542 TAIR:At1g10320 eggNOG:NOG304335
HOGENOM:HOG000083070 InParanoid:Q9SY74 OMA:CSRKHVY PhylomeDB:Q9SY74
ProtClustDB:CLSN2679568 Genevestigator:Q9SY74 PANTHER:PTHR12620
Uniprot:Q9SY74
Length = 757
Score = 173 (66.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 39/103 (37%), Positives = 56/103 (54%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
TDEE + Y+ F+EDV E KYGE+ VC N HL GNVY+ +R E A A
Sbjct: 296 TDEEAELCYEEFYEDVHTEFL-KYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 354
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQY-EMVLETKNADPVC 108
+N R+F G+ V E ++ ++ A C +Y + L+T + C
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSAC 397
>UNIPROTKB|F1PIC2 [details] [associations]
symbol:F1PIC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:EDAFIEE EMBL:AAEX03026161 Ensembl:ENSCAFT00000019389
Uniprot:F1PIC2
Length = 455
Score = 168 (64.2 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 31/91 (34%), Positives = 57/91 (62%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F++DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 227 SEEETYQQFLDFYDDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 285
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 286 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 316
>MGI|MGI:103287 [details] [associations]
symbol:Zrsr2 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030628 "pre-mRNA
3'-splice site binding" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
MGI:MGI:103287 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000245 eggNOG:NOG304335
PANTHER:PTHR12620 GO:GO:0005689 GO:GO:0030628 HOVERGEN:HBG054605
HOGENOM:HOG000049279 ChiTaRS:ZRSR2 EMBL:D45205 IPI:IPI00828580
PIR:A57120 UniGene:Mm.426178 ProteinModelPortal:Q62377 SMR:Q62377
PhosphoSite:Q62377 PRIDE:Q62377 NextBio:302143
Genevestigator:Q62377 GermOnline:ENSMUSG00000031370 Uniprot:Q62377
Length = 462
Score = 168 (64.2 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 32/91 (35%), Positives = 55/91 (60%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE+ + + +F+ DV E + G++ + V NL HL GNVY++++ EED + A +
Sbjct: 232 SEEEIYQQFLDFYYDVLPEFKS-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSV 290
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 291 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEV 321
>UNIPROTKB|F1N5D0 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:EDAFIEE
EMBL:DAAA02074879 IPI:IPI01017474 Ensembl:ENSBTAT00000027211
Uniprot:F1N5D0
Length = 474
Score = 168 (64.2 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 31/91 (34%), Positives = 57/91 (62%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F++DV E ++ G++ + V NL HL GNVY++++ EE+ + A++
Sbjct: 237 SEEETYQQFLDFYDDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSL 295
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 296 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 326
>UNIPROTKB|F1NHR6 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:EDAFIEE EMBL:AADN02011332 IPI:IPI00585296
Ensembl:ENSGALT00000026711 Uniprot:F1NHR6
Length = 459
Score = 166 (63.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
+DEE + + F+EDV E ++ G++ + V N HL GNVY++++ E+D + A+
Sbjct: 215 SDEETYQQFLEFYEDVLPEFQN-VGKVVQFKVSCNYEPHLRGNVYVQYQTEKDCQAALAL 273
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYE 96
+ RW+ GR ++ E PVT ++ A C +E
Sbjct: 274 FSGRWYAGRQLHCEFCPVTRWKTAICGLFE 303
>UNIPROTKB|I3LF64 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:EDAFIEE
EMBL:FP102132 Ensembl:ENSSSCT00000028847 Uniprot:I3LF64
Length = 479
Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F++DV E ++ G++ + V NL HL GNVY++++ EE+ + A+
Sbjct: 235 SEEETYQQFLDFYDDVLPEFKN-VGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQAALAL 293
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 294 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEI 324
>RGD|1559763 [details] [associations]
symbol:Zrsr2 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 2" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030628 "pre-mRNA 3'-splice
site binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1559763 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 OrthoDB:EOG4CNQRM CTD:8233
IPI:IPI00358500 RefSeq:XP_001067753.2 RefSeq:XP_217612.5
UniGene:Rn.26786 Ensembl:ENSRNOT00000045300 GeneID:302670
KEGG:rno:302670 UCSC:RGD:1559763 NextBio:649974 Uniprot:D3ZHQ8
Length = 541
Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE + + +F+ DV E + G++ + V NL HL GNVY++++ EED + A +
Sbjct: 228 SEEETYQQFLDFYYDVLPEFKS-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSV 286
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
N RW+ GR + E PVT ++ A C +E+
Sbjct: 287 FNGRWYAGRQLQCEFCPVTRWKMAICGLFEV 317
>UNIPROTKB|F1PT19 [details] [associations]
symbol:F1PT19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
EMBL:AAEX03012736 EMBL:AAEX03012735 Ensembl:ENSCAFT00000038958
OMA:REXLENG Uniprot:F1PT19
Length = 430
Score = 164 (62.8 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++E+ +H+ F++DV E G + + V NL HL GNVY+++R E + A++
Sbjct: 228 SEEDTYQHFRAFYDDVLPEFR-AVGTVVQFKVSRNLEPHLRGNVYVQYRSEAECRAALSL 286
Query: 67 LNNRWFGGRPVYAELSPVTDFREACC 92
N RW+ GR + EL PVT ++ A C
Sbjct: 287 FNGRWYAGRRLQCELCPVTRWKAAIC 312
>ZFIN|ZDB-GENE-030131-1495 [details] [associations]
symbol:zrsr2 "zinc finger (CCCH type), RNA-binding
motif and serine/arginine rich 2" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
ZFIN:ZDB-GENE-030131-1495 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 CTD:8233 EMBL:CR848805 IPI:IPI00899441
RefSeq:XP_001920562.1 UniGene:Dr.116918 UniGene:Dr.77318
Ensembl:ENSDART00000081319 GeneID:100005490 KEGG:dre:100005490
NextBio:20786710 Uniprot:E7F2A1
Length = 635
Score = 162 (62.1 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 7 TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 66
++EE+ + + +F+ED E ++ G + + V N HL GNVY+++ EE ++A
Sbjct: 241 SEEELHQQFLDFYEDALPEFKNA-GRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVM 299
Query: 67 LNNRWFGGRPVYAELSPVTDFREACCRQYE 96
N RW+ GR + E SPVT ++ A C ++
Sbjct: 300 FNGRWYAGRQLQCEFSPVTRWKTAICGLFD 329
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 148 (57.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
N +E +DV EC++KYG++ + V N +G +++KF + AEKA+
Sbjct: 515 NPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNE----LGQIFVKFENADFAEKAI 570
Query: 65 NDLNNRWFGGRPVYAELSPVTDF 87
L+ RWFGGR + A + P TD+
Sbjct: 571 TGLHQRWFGGRTIKASILPETDY 593
>FB|FBgn0031628 [details] [associations]
symbol:CG3294 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0042060 GO:GO:0000398 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 UniGene:Dm.11865 GeneID:33677
KEGG:dme:Dmel_CG3294 FlyBase:FBgn0031628 GenomeRNAi:33677
NextBio:784734 RefSeq:NP_608857.2 ProteinModelPortal:Q9VR26
SMR:Q9VR26 IntAct:Q9VR26 MINT:MINT-825396 STRING:Q9VR26
EnsemblMetazoa:FBtr0077381 UCSC:CG3294-RA InParanoid:Q9VR26
OMA:HKEYASA PhylomeDB:Q9VR26 ArrayExpress:Q9VR26 Bgee:Q9VR26
Uniprot:Q9VR26
Length = 456
Score = 132 (51.5 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
+T+++++ YD FF DV E K+G I N +HL G+V++++ E A +A
Sbjct: 227 LTEQDLRHDYDEFFNDVVEELR-KFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFT 285
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACC 92
+L R++ + + E S + +R A C
Sbjct: 286 NLQGRYYASKRLNVEFSNLRTWRGAVC 312
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 62
++ + EE + +DV ECE+KYG + +++ L + G++Y+KF R + E
Sbjct: 462 VNMASREEGESWVKELEDDVRAECEEKYGHV--VHIA--LDPNSQGDIYLKFDRVQGGEN 517
Query: 63 AVNDLNNRWFGGRPVYAELSPVTD 86
A+ LN R+FGGR + A+ PV D
Sbjct: 518 AIKGLNGRFFGGRQITAQ--PVVD 539
>RGD|1563377 [details] [associations]
symbol:Htatsf1 "HIV-1 Tat specific factor 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1563377 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000009902
OrthoDB:EOG4BRWKT IPI:IPI00949770 Ensembl:ENSRNOT00000065636
ArrayExpress:D4A997 Uniprot:D4A997
Length = 776
Score = 117 (46.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFREPEEADNCIQTLDGRWFGGRQITA 344
Query: 80 EL-SPVTDFR-EACCRQYE 96
+ TD++ E R+ E
Sbjct: 345 QAWDGTTDYQVEETSRERE 363
Score = 33 (16.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 92 CRQYEMVLETKNADPVCT-----REKAKKKMGVYEISGVS 126
C + E+ LE N RE KK YE +G++
Sbjct: 495 CPERELELEXGNPKKESQENGPERESKKKXKEXYEKNGLA 534
>FB|FBgn0086683 [details] [associations]
symbol:Spf45 "Spf45" species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IGI] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 EMBL:AE014134 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
HSSP:Q01081 GO:GO:0000381 KO:K12840 InterPro:IPR016967
PIRSF:PIRSF031066 GeneTree:ENSGT00390000008837 UniGene:Dm.7003
GeneID:3355114 KEGG:dme:Dmel_CG17540 CTD:3355114
FlyBase:FBgn0086683 GenomeRNAi:3355114 NextBio:850653 EMBL:DQ295864
EMBL:BT044104 RefSeq:NP_001036426.1 SMR:Q7PL83 IntAct:Q7PL83
MINT:MINT-964924 STRING:Q7PL83 EnsemblMetazoa:FBtr0111239
UCSC:CG17540-RA InParanoid:Q7PL83 OMA:RAGFYNQ Uniprot:Q7PL83
Length = 403
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 25 ECEDKYGEIEEMNVCDNLG---DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
EC KYGE+ + + ++ G + V ++++FRR E A KAV DLN R+FGGR V A
Sbjct: 333 ECNTKYGEVNSVIIHESFGTVPEDAV-KIFVEFRRIESAIKAVVDLNGRFFGGRQVRA 389
>UNIPROTKB|I3LC46 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000009902
KO:K13093 OMA:MQELYGD EMBL:FP340295 RefSeq:XP_003360505.1
Ensembl:ENSSSCT00000022638 GeneID:100622043 KEGG:ssc:100622043
Uniprot:I3LC46
Length = 760
Score = 118 (46.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFREPEEADYCIQTLDGRWFGGRQITA 344
Query: 80 EL-SPVTDFR-EACCRQYE 96
E TD++ E R+ E
Sbjct: 345 EAWDGTTDYQVEESTRERE 363
>ZFIN|ZDB-GENE-040426-1578 [details] [associations]
symbol:htatsf1 "HIV TAT specific factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1578 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG317500 KO:K13093
CTD:27336 HOVERGEN:HBG059454 OrthoDB:EOG4BRWKT EMBL:BC055565
IPI:IPI00510206 RefSeq:NP_957497.1 UniGene:Dr.77530
ProteinModelPortal:Q7SXJ9 SMR:Q7SXJ9 STRING:Q7SXJ9 PRIDE:Q7SXJ9
GeneID:394178 KEGG:dre:394178 HOGENOM:HOG000067967
InParanoid:Q7SXJ9 NextBio:20815121 ArrayExpress:Q7SXJ9 Bgee:Q7SXJ9
Uniprot:Q7SXJ9
Length = 450
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 35/102 (34%), Positives = 56/102 (54%)
Query: 1 MIISNV---TD-EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 56
+II N+ TD EE + + +D+ ECE K+G+++++ + D H G + F+
Sbjct: 270 IIIQNMFHPTDFEEDPLVLNEYRDDLRTECE-KFGQVKKVIIFDR---HPDGVASVAFKE 325
Query: 57 EEDAEKAVNDLNNRWFGGRPVYAEL-SPVTDFR-EACCRQYE 96
E+A+ LN RWFGGR + A L VTD++ E R+ E
Sbjct: 326 PEEADACQVALNGRWFGGRKLSALLWDGVTDYQVEETSRERE 367
>MGI|MGI:1919709 [details] [associations]
symbol:Htatsf1 "HIV TAT specific factor 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919709 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG317500
GeneTree:ENSGT00390000009902 KO:K13093 EMBL:AL672263 CTD:27336
HOGENOM:HOG000049201 HOVERGEN:HBG059454 OrthoDB:EOG4BRWKT
EMBL:AK005527 EMBL:AK011234 EMBL:AK049495 EMBL:BC037711
EMBL:BC114588 EMBL:BC114589 IPI:IPI00221566 IPI:IPI00775823
RefSeq:NP_082518.1 RefSeq:NP_083647.1 UniGene:Mm.2152
ProteinModelPortal:Q8BGC0 SMR:Q8BGC0 DIP:DIP-46367N STRING:Q8BGC0
PhosphoSite:Q8BGC0 PaxDb:Q8BGC0 PRIDE:Q8BGC0
Ensembl:ENSMUST00000088652 Ensembl:ENSMUST00000114751 GeneID:72459
KEGG:mmu:72459 UCSC:uc009tgv.2 InParanoid:Q8BGC0 NextBio:336274
Bgee:Q8BGC0 CleanEx:MM_HTATSF1 Genevestigator:Q8BGC0
GermOnline:ENSMUSG00000067873 Uniprot:Q8BGC0
Length = 757
Score = 116 (45.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 290 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITA 345
Query: 80 EL-SPVTDFR-EACCRQYE 96
+ TD++ E R+ E
Sbjct: 346 QAWDGTTDYQVEETSRERE 364
>UNIPROTKB|F1P1G7 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000009902 KO:K13093 CTD:27336 OMA:AAYQANY
EMBL:AADN02013314 IPI:IPI00582585 RefSeq:XP_001233032.1
UniGene:Gga.15900 ProteinModelPortal:F1P1G7
Ensembl:ENSGALT00000010348 GeneID:422245 KEGG:gga:422245
NextBio:20824907 Uniprot:F1P1G7
Length = 450
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ ECE K+G+++++ + D H G + F+ +A+ LN RWFGGR + A
Sbjct: 291 EDLRTECE-KFGQVKKVLIFDR---HPDGVASVSFKEATEADLCKLTLNGRWFGGRQLSA 346
Query: 80 EL-SPVTDFR-EACCRQYE 96
E VTD++ E R+ E
Sbjct: 347 ETWDGVTDYQVEETARERE 365
>UNIPROTKB|E2R8T8 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000009902 EMBL:AAEX03026952
Ensembl:ENSCAFT00000035753 NextBio:20855936 Uniprot:E2R8T8
Length = 750
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 80 EL-SPVTDFR-EACCRQYE 96
+ TD++ E R+ E
Sbjct: 345 QAWDGTTDYQVEETTRERE 363
>UNIPROTKB|O43719 [details] [associations]
symbol:HTATSF1 "HIV Tat-specific factor 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0019079 "viral genome replication" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0006351 GO:GO:0003723
EMBL:CH471150 EMBL:Z97632 GO:GO:0019079 eggNOG:NOG317500 KO:K13093
GO:GO:0032784 EMBL:U76992 EMBL:BT006886 EMBL:AB209303 EMBL:BC009896
IPI:IPI00013788 RefSeq:NP_001156752.1 RefSeq:NP_055315.2
UniGene:Hs.204475 PDB:2DIT PDBsum:2DIT ProteinModelPortal:O43719
SMR:O43719 DIP:DIP-42095N IntAct:O43719 MINT:MINT-1193787
STRING:O43719 PhosphoSite:O43719 PaxDb:O43719 PeptideAtlas:O43719
PRIDE:O43719 DNASU:27336 Ensembl:ENST00000218364
Ensembl:ENST00000535601 GeneID:27336 KEGG:hsa:27336 UCSC:uc004ezw.3
CTD:27336 GeneCards:GC0XP135579 HGNC:HGNC:5276 HPA:HPA000504
MIM:300346 neXtProt:NX_O43719 PharmGKB:PA29540 HOGENOM:HOG000049201
HOVERGEN:HBG059454 InParanoid:O43719 OMA:MQELYGD OrthoDB:EOG4BRWKT
PhylomeDB:O43719 ChiTaRS:HTATSF1 EvolutionaryTrace:O43719
GenomeRNAi:27336 NextBio:50396 PMAP-CutDB:O43719
ArrayExpress:O43719 Bgee:O43719 CleanEx:HS_HTATSF1
Genevestigator:O43719 GermOnline:ENSG00000102241 Uniprot:O43719
Length = 755
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 80 EL-SPVTDFR-EACCRQYE 96
+ TD++ E R+ E
Sbjct: 345 QAWDGTTDYQVEETSRERE 363
>UNIPROTKB|G3N370 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000009902
OMA:MQELYGD EMBL:DAAA02033795 Ensembl:ENSBTAT00000025363
Uniprot:G3N370
Length = 756
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + LN RWFGGR + A
Sbjct: 289 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFRSPEEADYCIQTLNGRWFGGRQITA 344
Query: 80 E 80
+
Sbjct: 345 Q 345
>UNIPROTKB|J9NZQ1 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000009902 KO:K13093 CTD:27336 OMA:MQELYGD
EMBL:AAEX03026952 RefSeq:XP_538183.3 Ensembl:ENSCAFT00000048239
GeneID:481062 KEGG:cfa:481062 Uniprot:J9NZQ1
Length = 768
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 80 EL-SPVTDFR-EACCRQYE 96
+ TD++ E R+ E
Sbjct: 345 QAWDGTTDYQVEETTRERE 363
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 2 IISNVTDEEMQEH--YD-NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREE 58
I+SN+ D + + +D +DV EC K+G + ++V D + H G VY+K
Sbjct: 487 ILSNMFDPRTETNPTWDVEIRDDVLEECA-KHGGVLHIHV-DTIS-H-TGTVYVKCPSTT 542
Query: 59 DAEKAVNDLNNRWFGGRPVYAELSPVTDFREA---CCRQYEMVLET-KNAD 105
A AVN L+ RWF GR + A PV ++ ++V T KN D
Sbjct: 543 TAVLAVNALHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLVTSTRKNTD 593
>UNIPROTKB|A7MB77 [details] [associations]
symbol:RBM17 "RBM17 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 CTD:84991 HOVERGEN:HBG059363
OMA:IPPPVYD OrthoDB:EOG48SGTF GeneTree:ENSGT00390000008837
EMBL:DAAA02035345 EMBL:BC151377 IPI:IPI00691962
RefSeq:NP_001094553.1 UniGene:Bt.106839 SMR:A7MB77 STRING:A7MB77
Ensembl:ENSBTAT00000029268 GeneID:512694 KEGG:bta:512694
InParanoid:A7MB77 NextBio:20870515 Uniprot:A7MB77
Length = 401
Score = 104 (41.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 329 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 387
Query: 83 PVTDFR 88
+ FR
Sbjct: 388 NLDKFR 393
>UNIPROTKB|E2RMQ0 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12840 InterPro:IPR016967 PIRSF:PIRSF031066
CTD:84991 OMA:IPPPVYD GeneTree:ENSGT00390000008837
EMBL:AAEX03001312 RefSeq:XP_849339.1 ProteinModelPortal:E2RMQ0
Ensembl:ENSCAFT00000008395 GeneID:478014 KEGG:cfa:478014
NextBio:20853403 Uniprot:E2RMQ0
Length = 401
Score = 104 (41.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 329 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 387
Query: 83 PVTDFR 88
+ FR
Sbjct: 388 NLDKFR 393
>UNIPROTKB|Q96I25 [details] [associations]
symbol:RBM17 "Splicing factor 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000467
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102
PROSITE:PS50174 SMART:SM00361 SMART:SM00443 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:NOG317167 HOGENOM:HOG000231726
KO:K12840 InterPro:IPR016967 PIRSF:PIRSF031066 PDB:2PEH PDBsum:2PEH
EMBL:BC007871 EMBL:BC009064 EMBL:BC039322 IPI:IPI00176706
RefSeq:NP_001139019.1 RefSeq:NP_116294.1 UniGene:Hs.498548 PDB:2PE8
PDBsum:2PE8 ProteinModelPortal:Q96I25 SMR:Q96I25 DIP:DIP-29409N
IntAct:Q96I25 MINT:MINT-3053773 STRING:Q96I25 PhosphoSite:Q96I25
DMDM:34925383 PaxDb:Q96I25 PeptideAtlas:Q96I25 PRIDE:Q96I25
DNASU:84991 Ensembl:ENST00000379888 Ensembl:ENST00000446108
GeneID:84991 KEGG:hsa:84991 UCSC:uc001ijb.3 CTD:84991
GeneCards:GC10P006130 HGNC:HGNC:16944 HPA:HPA037477 MIM:606935
neXtProt:NX_Q96I25 PharmGKB:PA134860993 HOVERGEN:HBG059363
InParanoid:Q96I25 OMA:IPPPVYD OrthoDB:EOG48SGTF PhylomeDB:Q96I25
EvolutionaryTrace:Q96I25 GenomeRNAi:84991 NextBio:75577
ArrayExpress:Q96I25 Bgee:Q96I25 CleanEx:HS_RBM17
Genevestigator:Q96I25 GermOnline:ENSG00000134453 Uniprot:Q96I25
Length = 401
Score = 104 (41.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 329 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 387
Query: 83 PVTDFR 88
+ FR
Sbjct: 388 NLDKFR 393
>MGI|MGI:1924188 [details] [associations]
symbol:Rbm17 "RNA binding motif protein 17" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=TAS] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00361 SMART:SM00443 MGI:MGI:1924188 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000375 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 EMBL:AL831794 CTD:84991
HOVERGEN:HBG059363 OMA:IPPPVYD OrthoDB:EOG48SGTF EMBL:AF083384
EMBL:BC034896 IPI:IPI00170394 RefSeq:NP_690037.1 UniGene:Mm.182769
ProteinModelPortal:Q8JZX4 SMR:Q8JZX4 STRING:Q8JZX4
PhosphoSite:Q8JZX4 PaxDb:Q8JZX4 PRIDE:Q8JZX4
Ensembl:ENSMUST00000040314 GeneID:76938 KEGG:mmu:76938
UCSC:uc008iio.1 GeneTree:ENSGT00390000008837 InParanoid:A2AP41
NextBio:346129 Bgee:Q8JZX4 CleanEx:MM_RBM17 Genevestigator:Q8JZX4
GermOnline:ENSMUSG00000037197 Uniprot:Q8JZX4
Length = 405
Score = 104 (41.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 333 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 391
Query: 83 PVTDFR 88
+ FR
Sbjct: 392 NLDKFR 397
>RGD|1311208 [details] [associations]
symbol:Rbm17 "RNA binding motif protein 17" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000467 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50174 SMART:SM00361 SMART:SM00443
RGD:1311208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 CTD:84991 HOVERGEN:HBG059363
OMA:IPPPVYD OrthoDB:EOG48SGTF GeneTree:ENSGT00390000008837
EMBL:BC079248 IPI:IPI00464500 RefSeq:NP_001013076.1
UniGene:Rn.20694 SMR:Q6AY02 STRING:Q6AY02
Ensembl:ENSRNOT00000025550 GeneID:291295 KEGG:rno:291295
UCSC:RGD:1311208 InParanoid:Q6AY02 NextBio:632368
Genevestigator:Q6AY02 Uniprot:Q6AY02
Length = 405
Score = 104 (41.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 333 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 391
Query: 83 PVTDFR 88
+ FR
Sbjct: 392 NLDKFR 397
>UNIPROTKB|F1RUL1 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR016967 PIRSF:PIRSF031066 OMA:IPPPVYD
GeneTree:ENSGT00390000008837 EMBL:CU928668
Ensembl:ENSSSCT00000012186 Uniprot:F1RUL1
Length = 406
Score = 104 (41.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 334 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 392
Query: 83 PVTDFR 88
+ FR
Sbjct: 393 NLDKFR 398
>ZFIN|ZDB-GENE-040426-817 [details] [associations]
symbol:rbm17 "RNA binding motif protein 17"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 ZFIN:ZDB-GENE-040426-817 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 HSSP:P26368 CTD:84991
HOVERGEN:HBG059363 OMA:IPPPVYD GeneTree:ENSGT00390000008837
EMBL:BX842686 EMBL:BC045473 IPI:IPI00506477 RefSeq:NP_957209.1
UniGene:Dr.82331 SMR:Q7ZVN6 STRING:Q7ZVN6
Ensembl:ENSDART00000044043 GeneID:393889 KEGG:dre:393889
InParanoid:Q7ZVN6 NextBio:20814869 Uniprot:Q7ZVN6
Length = 418
Score = 103 (41.3 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 25 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
ECE KYG++ + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 346 ECE-KYGKVVRCVIFEISGVTDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 404
Query: 83 PVTDFR 88
+ FR
Sbjct: 405 NLDRFR 410
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 104 (41.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ E + D+ +V EC KYG + + + + G+ ++ ++++F
Sbjct: 421 MVLRNMVGPEDID--DDLEGEVMEEC-GKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFS 477
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ LNNRWF GR V AEL
Sbjct: 478 DAGEMNKAIQALNNRWFAGRKVVAEL 503
>TAIR|locus:2181452 [details] [associations]
symbol:ELF9 "EARLY FLOWERING 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0009910 "negative regulation of flower
development" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] InterPro:IPR000504 InterPro:IPR003169
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0000184 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009910 SUPFAM:SSF55277 HSSP:Q01081 EMBL:AL391148
eggNOG:NOG317500 KO:K13093 InterPro:IPR025640 Pfam:PF14237
OMA:AAYQANY EMBL:BT022024 EMBL:AK229192 IPI:IPI00529602 PIR:T51496
RefSeq:NP_197130.1 UniGene:At.10000 ProteinModelPortal:Q9LF02
SMR:Q9LF02 PaxDb:Q9LF02 PRIDE:Q9LF02 EnsemblPlants:AT5G16260.1
GeneID:831486 KEGG:ath:AT5G16260 TAIR:At5g16260
HOGENOM:HOG000240892 InParanoid:Q9LF02 PhylomeDB:Q9LF02
ProtClustDB:CLSN2916222 Genevestigator:Q9LF02 Uniprot:Q9LF02
Length = 519
Score = 104 (41.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 65
+ DE++ + EDV E K+G + + VC++ H G V ++F+ DA+K +
Sbjct: 420 MADEDLVAELE---EDVKEESL-KHGPFDSVKVCEH---HPQGVVLVRFKDRRDAQKCIE 472
Query: 66 DLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLE 100
+N RW+ R ++A L + A R +++ E
Sbjct: 473 AMNGRWYAKRQIHASLDDGS-VNHATVRDFDLEAE 506
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ E + D+ +V EC K+G + + + + G+ ++ ++++F
Sbjct: 443 MVLRNMVGPEDID--DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEVIVKIFVEFS 499
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ LNNRWFGGR V AE+
Sbjct: 500 AASEMNKAIQALNNRWFGGRKVIAEV 525
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ D + + D+ +V EC K+G + + + + G+ ++ ++++F
Sbjct: 435 MVLRNMVDPKDID--DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS 491
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ DLN RWF GR V AE+
Sbjct: 492 VASETHKAIQDLNGRWFAGRKVVAEV 517
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ D + + D+ +V EC K+G + + + + G+ ++ ++++F
Sbjct: 469 MVLRNMVDPKDID--DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS 525
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ LN RWFGGR V AE+
Sbjct: 526 MASETHKAIQALNGRWFGGRKVVAEV 551
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ D + + D+ +V EC K+G + + + + G+ ++ ++++F
Sbjct: 469 MVLRNMVDPKDID--DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS 525
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ LN RWFGGR V AE+
Sbjct: 526 MASETHKAIQALNGRWFGGRKVVAEV 551
>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
symbol:u2af2b "U2 small nuclear RNA auxiliary
factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046660 "female sex differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
NextBio:20816796 Uniprot:Q6P022
Length = 475
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNV---CDNLGDHLVGNVYIKFRR 56
+++ V EE+ E Y+ EDV EC KYG+++ + + D L G ++++F
Sbjct: 380 LMNMVAPEELIDDEEYEEIVEDVKEECS-KYGQVKSIEIPRPVDGLDIPGTGKIFVEFTS 438
Query: 57 EEDAEKAVNDLNNRWFGGRPV 77
D++KA+ L R F R V
Sbjct: 439 VYDSQKAMQGLTGRKFANRVV 459
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 2 IISNVTD--EEMQEHYDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREE 58
++SN+ D +E + +D+ EDV +C G + +V + G GNVY+K
Sbjct: 425 LLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGAL---HVFVDKGSEQ-GNVYVKCPSIV 480
Query: 59 DAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC--CRQYEMVLETKNADPV 107
A +AV+ L+ RWF G+ + A PV + + +VL T+ A PV
Sbjct: 481 IAHQAVSALHGRWFSGKVITANYVPVNSYHDLFPDAVHARIVLTTRGAAPV 531
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 100 (40.3 bits), Expect = 0.00020, P = 0.00020
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 2 IISNVTDEEMQ--EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLV---GNVYIKFRR 56
+++ VT++E++ + Y+ EDV EC KYG + + + DH V G V+++F
Sbjct: 402 LMNMVTEDELKADDEYEEILEDVRDECS-KYGIVRSLEIPRPYEDHPVPGVGKVFVEFAS 460
Query: 57 EEDAEKAVNDLNNRWFGGRPV 77
D ++A L R F R V
Sbjct: 461 TSDCQRAQAALTGRKFANRTV 481
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 99 (39.9 bits), Expect = 0.00024, P = 0.00024
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNV---CDNLGDHLVGNVYIKFRR 56
+++ V EE+ E Y+ EDV EC KYG+++ + + D L G ++++F
Sbjct: 375 LMNMVAPEELLDDEEYEEIVEDVRDECS-KYGQVKSIEIPRPVDGLDIPGTGKIFVEFMS 433
Query: 57 EEDAEKAVNDLNNRWFGGRPV 77
D++KA+ L R F R V
Sbjct: 434 VFDSQKAMQGLTGRKFANRVV 454
>UNIPROTKB|E1BCC3 [details] [associations]
symbol:UHMK1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0046825 "regulation of protein export from
nucleus" evidence=IEA] [GO:0046777 "protein autophosphorylation"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0032839 "dendrite cytoplasm"
evidence=IEA] [GO:0031175 "neuron projection development"
evidence=IEA] [GO:0030424 "axon" evidence=IEA] [GO:0007050 "cell
cycle arrest" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000719 InterPro:IPR011009 InterPro:IPR012677
Pfam:PF00069 PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360
GO:GO:0005524 GO:GO:0005634 GO:GO:0030424 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.70.330 GO:GO:0046777 GO:GO:0007050
GO:GO:0003676 GO:GO:0032839 GO:GO:0031175 GO:GO:0043021
GO:GO:0045948 GO:GO:0046825 GO:GO:0071598
GeneTree:ENSGT00690000102248 CTD:127933 KO:K08877 OMA:YGVFTNH
EMBL:DAAA02006926 EMBL:DAAA02006927 IPI:IPI00718633
RefSeq:NP_001192514.1 UniGene:Bt.112437 ProteinModelPortal:E1BCC3
Ensembl:ENSBTAT00000016871 GeneID:538770 KEGG:bta:538770
NextBio:20877567 Uniprot:E1BCC3
Length = 419
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E +E Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEEEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFR 88
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>UNIPROTKB|E2RFD1 [details] [associations]
symbol:UHMK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0046825 "regulation of protein export from
nucleus" evidence=IEA] [GO:0046777 "protein autophosphorylation"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0032839 "dendrite cytoplasm"
evidence=IEA] [GO:0031175 "neuron projection development"
evidence=IEA] [GO:0030424 "axon" evidence=IEA] [GO:0007050 "cell
cycle arrest" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000719 InterPro:IPR011009 InterPro:IPR012677
Pfam:PF00069 PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360
GO:GO:0005524 GO:GO:0005634 GO:GO:0030424 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.70.330 GO:GO:0046777 GO:GO:0007050
GO:GO:0003676 GO:GO:0032839 GO:GO:0031175 GO:GO:0043021
GO:GO:0045948 GO:GO:0046825 GO:GO:0071598
GeneTree:ENSGT00690000102248 CTD:127933 KO:K08877 OMA:YGVFTNH
EMBL:AAEX03018419 EMBL:AAEX03018420 RefSeq:XP_536143.3
ProteinModelPortal:E2RFD1 Ensembl:ENSCAFT00000020791 GeneID:478986
KEGG:cfa:478986 Uniprot:E2RFD1
Length = 419
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E +E Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEEEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFR 88
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>UNIPROTKB|Q8TAS1 [details] [associations]
symbol:UHMK1 "Serine/threonine-protein kinase Kist"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0018105
"peptidyl-serine phosphorylation" evidence=ISS;IDA] [GO:0016740
"transferase activity" evidence=IC] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004674 "protein serine/threonine kinase
activity" evidence=IDA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0046777 "protein autophosphorylation" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0007050 "cell cycle arrest"
evidence=IMP] [GO:0046825 "regulation of protein export from
nucleus" evidence=IDA] [GO:0045948 "positive regulation of
translational initiation" evidence=ISS] [GO:0032839 "dendrite
cytoplasm" evidence=ISS] [GO:0030424 "axon" evidence=ISS]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0043021 "ribonucleoprotein complex binding" evidence=ISS]
[GO:0071598 "neuronal ribonucleoprotein granule" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000719 InterPro:IPR011009
InterPro:IPR012677 Pfam:PF00069 PROSITE:PS00107 PROSITE:PS00108
PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360 GO:GO:0005524
GO:GO:0005634 eggNOG:COG0515 GO:GO:0030424 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.70.330 EMBL:CH471067 GO:GO:0046777
GO:GO:0007050 GO:GO:0018105 GO:GO:0003723 GO:GO:0032839
GO:GO:0031175 GO:GO:0043021 GO:GO:0045948 GO:GO:0046825
GO:GO:0071598 EMBL:AJ536197 EMBL:AK292369 EMBL:AL359699
EMBL:BC014917 EMBL:BC026046 IPI:IPI00163376 IPI:IPI00220575
RefSeq:NP_653225.2 RefSeq:NP_787062.1 UniGene:Hs.127310
ProteinModelPortal:Q8TAS1 SMR:Q8TAS1 IntAct:Q8TAS1
MINT:MINT-7241640 STRING:Q8TAS1 PhosphoSite:Q8TAS1 DMDM:24211880
PRIDE:Q8TAS1 DNASU:127933 Ensembl:ENST00000489294
Ensembl:ENST00000538489 GeneID:127933 KEGG:hsa:127933
UCSC:uc001gcc.2 UCSC:uc009wuu.2 CTD:127933 GeneCards:GC01P162467
HGNC:HGNC:19683 MIM:608849 neXtProt:NX_Q8TAS1 PharmGKB:PA134974001
HOGENOM:HOG000013166 HOVERGEN:HBG056149 InParanoid:Q8TAS1 KO:K08877
OMA:YGVFTNH OrthoDB:EOG4X6C8F PhylomeDB:Q8TAS1 ChiTaRS:UHMK1
GenomeRNAi:127933 NextBio:82204 ArrayExpress:Q8TAS1 Bgee:Q8TAS1
CleanEx:HS_UHMK1 Genevestigator:Q8TAS1 GermOnline:ENSG00000152332
Uniprot:Q8TAS1
Length = 419
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E +E Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEEEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFR 88
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 100 (40.3 bits), Expect = 0.00033, P = 0.00033
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 1 MIISNVTDEEMQ--EHYD-NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE 57
+I+ N+ D E + E++D + + EC +G+I M++ L + G +YI++
Sbjct: 637 LILRNMFDPETETEENWDQDILSETHAECST-FGKI--MHIY--LDKNTKGCIYIRYDNN 691
Query: 58 EDAEKAVNDLNNRWFGGRPVYAELSP 83
E KA+ L+ RWF + + AEL P
Sbjct: 692 ESPLKAIQKLHGRWFSKKQIIAELVP 717
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 271 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 326
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 327 AIAAVNALHGRWFAGKMITAAYVPLPTY 354
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 2 IISNVTDEEM--QEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHL---VGNVYIKFRR 56
+++ V EE+ E +++ D+ EC K+GE+ + + +G G V+++F
Sbjct: 354 LLNMVRPEELLDDEEFEDIRTDIKQECA-KFGEVRSIKIPRPIGQFPKRGCGKVFVQFES 412
Query: 57 EEDAEKAVNDLNNRWFGGRPV 77
ED++KA+ L+ R F GR V
Sbjct: 413 VEDSQKALKALSGRKFSGRIV 433
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 96 (38.9 bits), Expect = 0.00045, P = 0.00045
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECED--------KYGEIEEMNVC-DNLGDHLVGNVYIKFR 55
N + E H+ F D+ E + K+GE+ E + DN + G ++ +
Sbjct: 122 NRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYP 181
Query: 56 REEDAEKAVNDLNNRWFGGRPV 77
R EDAE+A++++N W G R +
Sbjct: 182 RREDAERAIDEMNGAWLGRRTI 203
>TAIR|locus:2028130 [details] [associations]
symbol:DRT111 "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006312 "mitotic
recombination" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0010212 "response to
ionizing radiation" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0009507 "chloroplast"
evidence=ISS] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00360 SMART:SM00443 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009507 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 EMBL:AC009917 GO:GO:0003723 EMBL:M98455
EMBL:AY045859 EMBL:AY091399 IPI:IPI00533002 PIR:G86429 PIR:S33706
RefSeq:NP_174336.1 UniGene:At.20697 UniGene:At.75631
ProteinModelPortal:P42698 SMR:P42698 IntAct:P42698 PaxDb:P42698
PRIDE:P42698 EnsemblPlants:AT1G30480.1 GeneID:839927
KEGG:ath:AT1G30480 GeneFarm:2948 TAIR:At1g30480 eggNOG:NOG317167
HOGENOM:HOG000231726 InParanoid:P42698 KO:K12840 OMA:EEMEKCG
PhylomeDB:P42698 ProtClustDB:CLSN2714275 Genevestigator:P42698
GermOnline:AT1G30480 InterPro:IPR016967 PIRSF:PIRSF031066
Uniprot:P42698
Length = 387
Score = 95 (38.5 bits), Expect = 0.00049, P = 0.00049
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 16 DNFFEDVFVECEDKYGEIEEMNVCD----NLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 71
D ++V EC KYG + + + + N H ++++F R E+ KA+ DL+ R+
Sbjct: 298 DELEDEVGGEC-GKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRY 356
Query: 72 FGGRPVYA 79
FGGR V A
Sbjct: 357 FGGRTVRA 364
>MGI|MGI:1341908 [details] [associations]
symbol:Uhmk1 "U2AF homology motif (UHM) kinase 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=TAS] [GO:0004674 "protein serine/threonine
kinase activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006468 "protein phosphorylation" evidence=TAS] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0018105 "peptidyl-serine phosphorylation"
evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030424 "axon" evidence=IDA] [GO:0031175 "neuron projection
development" evidence=IMP] [GO:0032839 "dendrite cytoplasm"
evidence=IDA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0046777 "protein autophosphorylation"
evidence=ISO] [GO:0046825 "regulation of protein export from
nucleus" evidence=ISO] [GO:0071598 "neuronal ribonucleoprotein
granule" evidence=IDA] InterPro:IPR000504 InterPro:IPR000719
InterPro:IPR011009 InterPro:IPR012677 Pfam:PF00069 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1341908 GO:GO:0005524 GO:GO:0005634 eggNOG:COG0515
GO:GO:0030424 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.70.330
GO:GO:0046777 GO:GO:0007050 BRENDA:2.7.11.1 GO:GO:0018105
GO:GO:0003723 GO:GO:0032839 GO:GO:0031175 GO:GO:0043021
GO:GO:0045948 GO:GO:0046825 GO:GO:0071598
GeneTree:ENSGT00690000102248 CTD:127933 HOGENOM:HOG000013166
HOVERGEN:HBG056149 KO:K08877 OMA:YGVFTNH OrthoDB:EOG4X6C8F
EMBL:AY180177 EMBL:Y10725 EMBL:BC058732 EMBL:AK013347 EMBL:X82320
IPI:IPI00311920 PIR:I48615 RefSeq:NP_034763.3 UniGene:Mm.209150
UniGene:Mm.389214 ProteinModelPortal:P97343 SMR:P97343
STRING:P97343 PhosphoSite:P97343 PRIDE:P97343
Ensembl:ENSMUST00000027979 GeneID:16589 KEGG:mmu:16589
UCSC:uc007dma.1 InParanoid:P97343 NextBio:290133 Bgee:P97343
CleanEx:MM_UHMK1 Genevestigator:P97343
GermOnline:ENSMUSG00000026667 Uniprot:P97343
Length = 419
Score = 95 (38.5 bits), Expect = 0.00055, P = 0.00055
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E ++ Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEDEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFR 88
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>RGD|2968 [details] [associations]
symbol:Uhmk1 "U2AF homology motif (UHM) kinase 1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=NAS]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=ISO;IDA] [GO:0005524 "ATP binding" evidence=IC] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0018105
"peptidyl-serine phosphorylation" evidence=ISO;IDA] [GO:0019899
"enzyme binding" evidence=IPI] [GO:0030424 "axon" evidence=IEA;ISO]
[GO:0031175 "neuron projection development" evidence=IEA;ISO]
[GO:0032839 "dendrite cytoplasm" evidence=IEA;ISO] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
[GO:0046777 "protein autophosphorylation" evidence=IEA;ISO]
[GO:0046825 "regulation of protein export from nucleus"
evidence=IEA;ISO] [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR000719
InterPro:IPR011009 InterPro:IPR012677 Pfam:PF00069 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360
RGD:2968 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 eggNOG:COG0515
GO:GO:0030424 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.70.330
GO:GO:0046777 GO:GO:0007050 BRENDA:2.7.11.1 GO:GO:0018105
GO:GO:0003723 GO:GO:0032839 GO:GO:0031175 GO:GO:0043021 GO:GO:0045948
GO:GO:0046825 GO:GO:0071598 GeneTree:ENSGT00690000102248 CTD:127933
HOGENOM:HOG000013166 HOVERGEN:HBG056149 KO:K08877 OMA:YGVFTNH
OrthoDB:EOG4X6C8F EMBL:X98374 EMBL:U70372 IPI:IPI00207043
RefSeq:NP_058989.1 UniGene:Rn.89229 ProteinModelPortal:Q63285
IntAct:Q63285 STRING:Q63285 PhosphoSite:Q63285
Ensembl:ENSRNOT00000003950 GeneID:246332 KEGG:rno:246332
InParanoid:Q63285 NextBio:623773 Genevestigator:Q63285
GermOnline:ENSRNOG00000002941 Uniprot:Q63285
Length = 419
Score = 95 (38.5 bits), Expect = 0.00055, P = 0.00055
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 5 NVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDA 60
NV D+ E ++ Y++ EDV EC+ KYG + + V +N G G V++++ D+
Sbjct: 327 NVLDDDYLENEDEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAGDS 382
Query: 61 EKAVNDLNNRWFGGRPVYAELSPVTDFR 88
+ A L R F G+ V A P++ ++
Sbjct: 383 KAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMN-VCDNLGDHLVGNVYIKFRREEDAE 61
+ N + +E NFF + G+I + VCD G +I+F E A+
Sbjct: 9 VGNAPFQTTEEELGNFFSSI--------GQINNVRIVCDRETGRPRGFAFIEFAEEGSAQ 60
Query: 62 KAVNDLNNRWFGGRPVYAELS 82
+AV +N F GRP+ L+
Sbjct: 61 RAVEQMNGAEFNGRPLRVNLA 81
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 96 (38.9 bits), Expect = 0.00058, P = 0.00058
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFR 55
M++ N+ D + + D+ +V EC K+G + + + + G+ ++ ++++F
Sbjct: 427 MVLRNMVDPKDID--DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS 483
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAEL 81
+ KA+ LN RWF GR V AE+
Sbjct: 484 MASETHKAIQALNGRWFAGRKVVAEV 509
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 96 (38.9 bits), Expect = 0.00058, P = 0.00058
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 422 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 477
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 478 AIAAVNALHGRWFAGKMITAAYVPLPTY 505
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 96 (38.9 bits), Expect = 0.00059, P = 0.00059
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 427 LSNMFNPQTEEEAGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 482
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 483 AIAAVNALHGRWFAGKMITAAYVPLPTY 510
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 96 (38.9 bits), Expect = 0.00059, P = 0.00059
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 428 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 483
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 484 AIAAVNALHGRWFAGKMITAAYVPLPTY 511
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 96 (38.9 bits), Expect = 0.00059, P = 0.00059
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 428 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 483
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 484 AIAAVNALHGRWFAGKMITAAYVPLPTY 511
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 96 (38.9 bits), Expect = 0.00059, P = 0.00059
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 428 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 483
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 484 AIAAVNALHGRWFAGKMITAAYVPLPTY 511
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 96 (38.9 bits), Expect = 0.00059, P = 0.00059
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 3 ISNVTDEEMQEH--YDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 59
+SN+ + + +E +D +DV EC +K+G + + V N GNVY+K
Sbjct: 428 LSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAA 483
Query: 60 AEKAVNDLNNRWFGGRPVYAELSPVTDF 87
A AVN L+ RWF G+ + A P+ +
Sbjct: 484 AIAAVNALHGRWFAGKMITAAYVPLPTY 511
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 130 130 0.00091 102 3 11 22 0.42 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 582 (62 KB)
Total size of DFA: 144 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.21u 0.08s 14.29t Elapsed: 00:00:01
Total cpu time: 14.21u 0.08s 14.29t Elapsed: 00:00:01
Start: Thu Aug 15 13:10:39 2013 End: Thu Aug 15 13:10:40 2013