RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4990
(130 letters)
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 80.5 bits (198), Expect = 1e-21
Identities = 65/80 (81%), Positives = 73/80 (91%)
Query: 4 SNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKA 63
S V+D EMQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKA
Sbjct: 25 SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 84
Query: 64 VNDLNNRWFGGRPVYAELSP 83
V DLNNRWF G+P++AELSP
Sbjct: 85 VIDLNNRWFNGQPIHAELSP 104
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 63.9 bits (155), Expect = 4e-15
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 6 VTDEEMQEHYDNFFEDVFVECEDKYG--EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKA 63
+ E Y+ EDV EC IE D + G ++++F D +KA
Sbjct: 15 PEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA 74
Query: 64 VNDLNNRWFGGRPVYAELSPVTDFRE 89
+ L R F R V + +
Sbjct: 75 MQGLTGRKFANRVVVTKYCDPDSYHR 100
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 60.3 bits (146), Expect = 1e-13
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 1 MIISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 60
+II N+ E ++ + + + ++ H G + FR E+A
Sbjct: 11 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEA 70
Query: 61 EKAVNDLNNRWFGGRPVYAELS-PVTDFR 88
+ + L+ RWFGGR + A+ TD++
Sbjct: 71 DYCIQTLDGRWFGGRQITAQAWDGTTDYQ 99
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 44.2 bits (104), Expect = 1e-07
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
V+D ++QE + ++G +++ V + +G + F R+ DA KA+
Sbjct: 11 GVSDADIQELFA------------EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAM 58
Query: 65 NDLNNRWFGGRPVYAELSP 83
N GRP+ +L
Sbjct: 59 KQYNGVPLDGRPMNIQLVT 77
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 42.5 bits (100), Expect = 7e-07
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 19/78 (24%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
V +++ F KYG+I +V G ++++ E +A AV
Sbjct: 27 VVKKSDVEAI----FS--------KYGKIVGCSVHK-------GFAFVQYVNERNARAAV 67
Query: 65 NDLNNRWFGGRPVYAELS 82
+ R G+ + L+
Sbjct: 68 AGEDGRMIAGQVLDINLA 85
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 41.6 bits (97), Expect = 1e-06
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ +E+++ F + +M G ++ F+ A A+
Sbjct: 14 KIKKDELKKSLHAIFSRFGQILDILVSRSLKMR----------GQAFVIFKEVSSATNAL 63
Query: 65 NDLNNRWFGGRPVYAELS 82
+ F +P+ + +
Sbjct: 64 RSMQGFPFYDKPMRIQYA 81
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 41.1 bits (96), Expect = 1e-06
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKA 63
+VT+ + E + G I + VC ++ +G Y+ F++ DAE+A
Sbjct: 11 DVTEAMLYEKFS------------PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 58
Query: 64 VNDLNNRWFGGRPVYAELS 82
++ +N G+PV S
Sbjct: 59 LDTMNFDVIKGKPVRIMWS 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 40.4 bits (94), Expect = 5e-06
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+T EEM + + KYG I ++ V + G Y+ + DA+ A
Sbjct: 18 KITAEEMYDIFG------------KYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAC 63
Query: 65 NDLNNRWFGGRPVYAELS 82
+ L+ R +
Sbjct: 64 DHLSGFNVCNRYLVVLYY 81
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 39.9 bits (93), Expect = 6e-06
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
T+E++ E + + + D + G ++++ DAE A+
Sbjct: 18 YTTEEQIYELFSKSGDIKK-----------IIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREACCRQY 95
+N R + + F+E RQY
Sbjct: 67 RYINGTRLDDRIIRTDWDA--GFKEG--RQY 93
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 39.2 bits (91), Expect = 9e-06
Identities = 7/78 (8%), Positives = 23/78 (29%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ D++++E +F + ++ ++A+
Sbjct: 12 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA-----------FCEYVDINVTDQAI 60
Query: 65 NDLNNRWFGGRPVYAELS 82
LN G + + + +
Sbjct: 61 AGLNGMQLGDKKLLVQRA 78
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 38.9 bits (90), Expect = 1e-05
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++E++++ + + + + ++ F E A KA
Sbjct: 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFA-----------FVTFMFPEHAVKAY 67
Query: 65 NDLNNRWFGGRPVYAELS 82
+++ + F GR ++ S
Sbjct: 68 AEVDGQVFQGRMLHVLPS 85
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 38.5 bits (89), Expect = 2e-05
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 20 EDVFVECEDKYGEIEEM-NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78
+ V +G+I ++ D + G +++F EDA A++++N GR +
Sbjct: 19 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 78
Query: 79 AELS 82
L+
Sbjct: 79 VNLA 82
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 38.1 bits (88), Expect = 2e-05
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
T+ +++E + + + V D G ++ F +DA++A
Sbjct: 20 YTTERDLREVFSKYGPIA-----------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 65 NDLNNRWFGGRPVY 78
N GR +
Sbjct: 69 ERANGMELDGRRIR 82
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 38.4 bits (89), Expect = 2e-05
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 17/79 (21%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++T+EEM++ ++ + + V G +I+ AE A
Sbjct: 19 DITEEEMRKLFEKYGKAGEVFIHKDKG-----------------FGFIRLETRTLAEIAK 61
Query: 65 NDLNNRWFGGRPVYAELSP 83
+L+N G+ + +
Sbjct: 62 VELDNMPLRGKQLRVRFAC 80
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 37.8 bits (87), Expect = 3e-05
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
N+T EE + + + E + + + ++ + +DAEKA+
Sbjct: 13 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG-----------FVNYIDPKDAEKAI 61
Query: 65 NDLNNRWFGGRPVYAELS 82
N LN + + +
Sbjct: 62 NTLNGLRLQTKTIKVSYA 79
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 38.7 bits (89), Expect = 4e-05
Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
V + ++++ ++ + V+ + ++KF+ A++A+
Sbjct: 53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYG-----------FVKFQSGSSAQQAI 101
Query: 65 NDLNNRWFGGRPVYAELS 82
LN + + L+
Sbjct: 102 AGLNGFNILNKRLKVALA 119
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 37.3 bits (86), Expect = 4e-05
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKA 63
++TD E+ + G I + D + G ++ F E D+++A
Sbjct: 13 DMTDRELYALFR------------AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 64 VNDLNNRWFGGRPVYAELS 82
+ LN + + +
Sbjct: 61 IKVLNGITVRNKRLKVSYA 79
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 37.8 bits (87), Expect = 4e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+VT +++ + + V+ + G+ D G+ + + A+ AV
Sbjct: 19 SVTLDDLADFFKQCGV---VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAV 75
Query: 65 NDLNNRWFGGRPVYAELS 82
+ + F G + L+
Sbjct: 76 EWFDGKDFQGSKLKVSLA 93
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 37.3 bits (86), Expect = 5e-05
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV----YIKFRREEDA 60
+ T+E ++ + K G I+ + V ++++++ E A
Sbjct: 9 STTEETLKGVFS------------KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 56
Query: 61 EKAVNDLNNRWFGGRPVYAELS 82
+KA+ L G + +S
Sbjct: 57 QKALKQLQGHTVDGHKLEVRIS 78
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 36.9 bits (85), Expect = 8e-05
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
N+T++E++E +++ + G YI+F+ E DAEK +
Sbjct: 27 NITEDELKEVFEDAL----------------EIRLVSQDGKSKGIAYIEFKSEADAEKNL 70
Query: 65 NDLNNRWFGGRPVYAELS 82
+ GR V +
Sbjct: 71 EEKQGAEIDGRSVSLYYT 88
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.0 bits (85), Expect = 8e-05
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
E + + + V D G + +++ +E A A+ +LN R F GR +
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82
Query: 80 ELS 82
+ +
Sbjct: 83 DNA 85
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 37.1 bits (85), Expect = 1e-04
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 18/94 (19%)
Query: 1 MIISNV-----TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 55
+I ++ E + +++ F Y + + V I F
Sbjct: 8 LIACVANDDVFSESETRAKFESLFR--------TYDKDTTFQYFKSFK-----RVRINFS 54
Query: 56 REEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 89
A A L+ F G+ + +
Sbjct: 55 NPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGS 88
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.2 bits (83), Expect = 1e-04
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
D+++ + + F + D + ++ + A+ A+
Sbjct: 29 EFGDQDLLQMFMPFGNV-----------VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 65 NDLNNRWFGGRPVYAELS 82
+N G + + +L
Sbjct: 78 QSMNGFQIGMKRLKVQLK 95
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 2e-04
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+VT+ + + + + ++ + +++F DA A+
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-------------FVEFYEHRDAAAAL 65
Query: 65 NDLNNRWFGGRPVYAELS 82
+N R G+ V +
Sbjct: 66 AAMNGRKILGKEVKVNWA 83
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.8 bits (82), Expect = 2e-04
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
V++ + E + V + +++F EEDA+ A+
Sbjct: 20 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG-----------FVEFLSEEDADYAI 68
Query: 65 NDLNNRWFGGRPVYAELS 82
++ G+P+ +
Sbjct: 69 KIMDMIKLYGKPIRVNKA 86
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 2e-04
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ + ++QE + F D G +I F R EDA +A+
Sbjct: 19 DTRETDLQELFRPFGSI-----------SRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 65 NDLNNRWFGGRPVYAELS-PVTD 86
++ + + E + P T+
Sbjct: 68 AGVSGFGYDHLILNVEWAKPSTN 90
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 35.5 bits (81), Expect = 3e-04
Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++E+QE + ++ E + +++ + A A
Sbjct: 18 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYA-----------LVEYETHKQALAAK 66
Query: 65 NDLNNRWFGGRPVYAELS 82
LN G+ + +
Sbjct: 67 EALNGAEIMGQTIQVDWC 84
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.1 bits (80), Expect = 3e-04
Identities = 9/60 (15%), Positives = 25/60 (41%)
Query: 24 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 83
C++ + +++ ++ D ++ E A+ A+ + F G+ + +L P
Sbjct: 17 SNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 6e-04
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+T +E+++ + + + + D + G +I+F + +AE+A+
Sbjct: 17 TMTQKELEQLFSQYGRII-----------TSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 65 NDLNNRWFGGR 75
LN + G
Sbjct: 66 KGLNGQKPSGA 76
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 34.3 bits (78), Expect = 7e-04
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
+++ + + N G + F ++A AV DLN+R G R V
Sbjct: 24 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 83
Query: 80 EL 81
L
Sbjct: 84 VL 85
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 34.3 bits (78), Expect = 8e-04
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
D ++++ F + + E + ++ F DA++A
Sbjct: 22 RFRDPDLRQM----FGQFGKILDVEIIFNERGSKGFG---------FVTFENSADADRAR 68
Query: 65 NDLNNRWFGGRPVYAELS 82
L+ GR + +
Sbjct: 69 EKLHGTVVEGRKIEVNNA 86
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 34.1 bits (78), Expect = 8e-04
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
E++E + F E V K G ++ F ++DA+KA
Sbjct: 19 QANQREIRELFSTFGELKTVRLPKKM----------TGTGAHRGFGFVDFITKQDAKKAF 68
Query: 65 NDLNN-RWFGGRPVYAELS 82
N L + GR + E +
Sbjct: 69 NALCHSTHLYGRRLVLEWA 87
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 34.3 bits (78), Expect = 8e-04
Identities = 8/78 (10%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++ +++++ + + ++ +++ +++F DAE AV
Sbjct: 25 DIRTKDIEDVFYKYGAIRDIDLKNRR--------------GGPPFAFVEFEDPRDAEDAV 70
Query: 65 NDLNNRWFGGRPVYAELS 82
+ + G + E
Sbjct: 71 YGRDGYDYDGYRLRVEFP 88
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 33.6 bits (76), Expect = 0.001
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77
+D+ C+ + + D + G ++ F A+KAV L +
Sbjct: 13 QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 70
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 33.0 bits (75), Expect = 0.002
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV-YIKFRREEDAEKA 63
+TD+++ + KYG I + N+ + V ++++ + E+A++A
Sbjct: 17 TITDDQLDTIFG------------KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 64 VNDLNNRWFGGR 75
++ LNN G
Sbjct: 65 ISALNNVIPEGG 76
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.2 bits (75), Expect = 0.002
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
+ + E + V D G ++ F +DA+ A+ +N + GR +
Sbjct: 20 QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
Query: 80 ELS 82
+ +
Sbjct: 80 DQA 82
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.2 bits (75), Expect = 0.002
Identities = 6/78 (7%), Positives = 20/78 (25%), Gaps = 12/78 (15%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++ ++E++ F + + + E E +
Sbjct: 29 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF------------ARMESTEKCEAVI 76
Query: 65 NDLNNRWFGGRPVYAELS 82
N ++ P + +
Sbjct: 77 GHFNGKFIKTPPGVSAPT 94
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 33.0 bits (74), Expect = 0.003
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 17/86 (19%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
E+QE + F V ++F +A KA
Sbjct: 21 GTLAAEIQETFSRFGSLGRVLL-----------------PEGGITAIVEFLEPLEARKAF 63
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREA 90
L F P+Y E +P+ F A
Sbjct: 64 RHLAYSKFHHVPLYLEWAPIGVFGAA 89
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 31.7 bits (71), Expect = 0.005
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ T +++ + YI +EDA V
Sbjct: 12 SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFA-----------YIDVTSKEDARYCV 60
Query: 65 NDLNNRWFGGRPVYAELS 82
LN G + ++S
Sbjct: 61 EKLNGLKIEGYTLVTKVS 78
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 31.5 bits (71), Expect = 0.006
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++ ++ + + + +G I V + G ++ F +E AE+A+
Sbjct: 19 SIDNKALYDTFS------------AFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAI 65
Query: 65 NDLNNRWFGGRPVYAELS 82
+N R V+
Sbjct: 66 EKMNGMLLNDRKVFVGRF 83
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.5 bits (71), Expect = 0.007
Identities = 8/78 (10%), Positives = 27/78 (34%), Gaps = 18/78 (23%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++T++E++E + + + + V + ++ F ++ A+
Sbjct: 16 DMTEDELREFFSQYGDVMDVFIPKPF----------------RAFAFVTFADDQIAQSLC 59
Query: 65 NDLNNRWFGGRPVYAELS 82
+ G V+ +
Sbjct: 60 G--EDLIIKGISVHISNA 75
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.1 bits (70), Expect = 0.008
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
++T ++ + F + D D ++ + + E A++AV
Sbjct: 14 DMTPTLLRGAFSPFGN-----------------IIDLSMDPPRNCAFVTYEKMESADQAV 56
Query: 65 NDLNNRWFGGRPVYAELS 82
+LN + ++
Sbjct: 57 AELNGTQVESVQLKVNIA 74
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.1 bits (70), Expect = 0.010
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
T+++++E++ F E + D H G +++F E K +
Sbjct: 19 KTTEQDLKEYFSTFGEVL-----------MVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
Query: 65 NDLNNRWFGGRPVYAELS 82
+ + GR +L
Sbjct: 68 SQRH--MIDGRWCDCKLP 83
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 31.1 bits (70), Expect = 0.010
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+TD+ M++ + +G+I E+ V G +++F E A A+
Sbjct: 29 GLTDQLMRQTFS------------PFGQIMEIRVF-----PEKGYSFVRFSTHESAAHAI 71
Query: 65 NDLNNRWFGGRPVYAELS 82
+N G V
Sbjct: 72 VSVNGTTIEGHVVKCYWG 89
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 31.4 bits (70), Expect = 0.011
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG 73
++ + V + + + + G +++FR E D + A+ + ++ G
Sbjct: 27 PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL-CRHKQYMG 85
Query: 74 GRPVYAELSPVTDFREA 90
R + E
Sbjct: 86 NRFIQVHPITKKGMLEK 102
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 31.5 bits (71), Expect = 0.011
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPV 77
DV + K+G + ++ +++ A+ A L+ + + +
Sbjct: 21 LDVLHQIFSKFGTVLKIITFTKNNQ---FQALLQYADPVSAQHAKLSLDGQNIYNACCTL 77
Query: 78 YAELS 82
+ S
Sbjct: 78 RIDFS 82
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 30.7 bits (69), Expect = 0.011
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKA 63
T E ++E++ ++GE++E V + L G ++ F + +K
Sbjct: 11 QTTQEGLREYFG------------QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 58
Query: 64 VNDLNNRWFGGRPV 77
+ + + +
Sbjct: 59 LA-QSRHELDSKTI 71
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 30.9 bits (69), Expect = 0.012
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
N T E+++ +++ F + ++ F E+ EK
Sbjct: 10 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG-----------FVTFESEDIVEKVC 58
Query: 65 NDLNNRWFGGRPV 77
++ + V
Sbjct: 59 E-IHFHEINNKMV 70
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 30.9 bits (69), Expect = 0.015
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 27 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 77
+D + E G +++ R+ED E A+ L++ F
Sbjct: 30 QDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEG 80
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 30.5 bits (68), Expect = 0.017
Identities = 8/78 (10%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ ++ + + + F + + + G +I F + ++ A+
Sbjct: 9 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK----------GYAFINFASFDASDAAI 58
Query: 65 NDLNNRWFGGRPVYAELS 82
+N ++ RP+ +
Sbjct: 59 EAMNGQYLCNRPITVSYA 76
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 30.3 bits (68), Expect = 0.017
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ T +++++++ F E ++ D + G ++ F+ E +K +
Sbjct: 10 DTTKKDLKDYFSKFGEV-----------VDCTLKLDPITGRSRGFGFVLFKESESVDKVM 58
Query: 65 NDLNNRWFGGRPV 77
D G+ +
Sbjct: 59 -DQKEHKLNGKVI 70
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 30.4 bits (68), Expect = 0.023
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 17/72 (23%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
N + + +D F ++ YI++ + A+ A
Sbjct: 28 NTSLAALAREFDRFGSIRTIDHVKGDS-----------------FAYIQYESLDAAQAAC 70
Query: 65 NDLNNRWFGGRP 76
+ GG
Sbjct: 71 AKMRGFPLGGPD 82
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 30.2 bits (67), Expect = 0.025
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW------FG 73
E + + V +H G + +F +E A+K + +
Sbjct: 23 EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 82
Query: 74 GRPVYAELS 82
GR + +L+
Sbjct: 83 GRQLKVDLA 91
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.1 bits (67), Expect = 0.026
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
VT+ ++ + F E + + G +I F +E A +A+
Sbjct: 29 RVTERDLVSLFARFQEKKGP-----------PIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 65 NDLNNRWFGGRPVYAELS 82
+ +N G+ + E
Sbjct: 78 HLVNGYKLYGKILVIEFG 95
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.1 bits (67), Expect = 0.027
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
+ E E + + D G ++ AE+A D N GR
Sbjct: 25 ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 83
Query: 80 ELS 82
L+
Sbjct: 84 NLA 86
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.2 bits (67), Expect = 0.027
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ EE+ + + + G +++F +E AEKA+
Sbjct: 26 GCSKEEIVQFFSGLEIVPNGMTL-----------PVDFQGRSTGEAFVQFASQEIAEKAL 74
Query: 65 NDLNNRWFGGRPVYAELSPVTDFREA 90
+ G R + S + R +
Sbjct: 75 K-KHKERIGHRYIEIFKSSRAEVRTS 99
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 29.8 bits (66), Expect = 0.036
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 14 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG 73
+ DV E + ++V + +G ++F+ E+DA K+ L+ +
Sbjct: 17 PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-RLHRKKLN 75
Query: 74 GRPVYAELSPVTDFREA 90
GR + + + D RE
Sbjct: 76 GREAFVHVVTLEDMREI 92
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 29.3 bits (65), Expect = 0.053
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 20 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 79
E+ + G ++F EDA A+ + R V
Sbjct: 29 ENDIYNFFSPLNPMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHRYVEL 86
Query: 80 ELS 82
L+
Sbjct: 87 FLN 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 29.0 bits (64), Expect = 0.084
Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 19/80 (23%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+V + ++ E + F +V ++F + A++ V
Sbjct: 26 SVVEADLVEALEKFGTICYVMMMPFKR-----------------QALVEFENIDSAKECV 68
Query: 65 NDLNN--RWFGGRPVYAELS 82
+ + G+ + S
Sbjct: 69 TFAADVPVYIAGQQAFFNYS 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 29.0 bits (64), Expect = 0.085
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 19 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78
E V + + + + N ++ A+ A++ LN G+P+
Sbjct: 12 PERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIR 71
Query: 79 AELS 82
LS
Sbjct: 72 ITLS 75
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 28.6 bits (63), Expect = 0.092
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ DE + F + + N C ++ F ++ AE+A+
Sbjct: 15 ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCA---------FMVFENKDSAERAL 65
Query: 65 NDLNNRWFGGRPVYAELS 82
+N G R + L+
Sbjct: 66 -QMNRSLLGNREISVSLA 82
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 28.5 bits (63), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 51 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 82
++ F EDA +A+ LN + G P+ L+
Sbjct: 48 FVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 79
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.5 bits (63), Expect = 0.096
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+VT+E ++E + + Y +F + A+
Sbjct: 26 DVTEESIKEFFRGLNISAVRLPREPSNPERLKGFG-----------YAEFEDLDSLLSAL 74
Query: 65 NDLNNRWFGGRPVYAELS 82
+ LN G + + +++
Sbjct: 75 S-LNEESLGNKRIRVDVA 91
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 28.2 bits (62), Expect = 0.12
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNV----CDNLGDHLVGNVYIKFRREEDA 60
+ D E+ + E K+G+I ++ + + Y+ + R EDA
Sbjct: 19 RLADPEVLKRP---------EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 61 EKAVNDLNNRWFGGRPV 77
+A+ +NN GR +
Sbjct: 70 LRAIQCVNNVVVDGRTL 86
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.6 bits (61), Expect = 0.14
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ +E+++E++ F E +E + C +I F+ EE +K +
Sbjct: 10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC-----------FITFKEEEPVKKIM 58
Query: 65 NDLNNRWFGGRPV 77
+ G
Sbjct: 59 -EKKYHNVGLSKC 70
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 28.1 bits (62), Expect = 0.16
Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 11/80 (13%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
EE+ E E V + G ++++ A A
Sbjct: 12 MKKREEILEEIAKVTEGV---------LDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 65 NDLNNR--WFGGRPVYAELS 82
L G + + +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWA 82
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.4 bits (62), Expect = 0.17
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 20 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78
E + ++YG+IE + + D G ++ F + +K V G
Sbjct: 111 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCE 169
Query: 79 AELS 82
+
Sbjct: 170 VRKA 173
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.1 bits (59), Expect = 0.27
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 24 VECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVN--DLNNRWFGGRPVYAE 80
V + N+ N +++ EE A VN +P+Y +
Sbjct: 20 VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 79
Query: 81 LS 82
S
Sbjct: 80 YS 81
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 26.8 bits (58), Expect = 0.37
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 3 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 62
I N+ + + ++ V D Y+ F ED EK
Sbjct: 18 IGNLNPNKSVAELKVAIS--------ELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEK 69
Query: 63 AVNDLNNRWFGGRPVYAELS 82
A+ L G + E
Sbjct: 70 ALE-LTGLKVFGNEIKLEKP 88
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 26.6 bits (58), Expect = 0.40
Identities = 6/73 (8%), Positives = 21/73 (28%), Gaps = 12/73 (16%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
+ + ++++++ + + + D G ++ F + +K V
Sbjct: 13 DTEEHHLRDYFEQYGKIEV-----------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
Query: 65 NDLNNRWFGGRPV 77
G
Sbjct: 62 I-QKYHTVNGHNC 73
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 26.6 bits (58), Expect = 0.45
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 17/66 (25%)
Query: 5 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 64
V+ ++ + + + ++R E++++A
Sbjct: 31 GVSRNQLLPVLEKCGLVDALLMPPNKP-----------------YSFARYRTTEESKRAY 73
Query: 65 NDLNNR 70
LN +
Sbjct: 74 VTLNGK 79
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 26.0 bits (56), Expect = 0.78
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 24 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 78
+D + E + G ++F R+ED AV L+N F
Sbjct: 12 GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 66
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl
reductase/20beta-hydroxysteroid dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 25.6 bits (55), Expect = 1.8
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 48 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 97
G+V + R + AV L R ++ + R +
Sbjct: 29 GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 78
>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 259
Score = 25.9 bits (56), Expect = 1.8
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLETKNAD 105
+ + R E + +L + + V A + R V E +
Sbjct: 35 VMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD-LGT-EAGVQRLLSAVRELPRPE 89
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 25.3 bits (55), Expect = 2.8
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90
+VY R +++ + ++ F +LS ++ +E
Sbjct: 34 SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQEL 75
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 24.4 bits (52), Expect = 2.9
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 17 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GGR 75
N E+ L + +++F E + A L
Sbjct: 15 NLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTH 74
Query: 76 PVYAELS 82
+ +
Sbjct: 75 AMKITFA 81
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 25.0 bits (54), Expect = 3.5
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLET 101
V I R E+ E+ + + A ++ VT+ L
Sbjct: 30 QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLAK 81
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 24.9 bits (54), Expect = 3.6
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLE 100
V R + E+ + + + G + +++ E + +
Sbjct: 36 KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD-LSN-EEDILSMFSAIRS 85
>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 272
Score = 24.6 bits (53), Expect = 5.1
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLET 101
NV I R E E+ + + V + ++ VT + + L+
Sbjct: 31 NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLKQ 82
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 24.1 bits (52), Expect = 6.0
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLET 101
V I R E E+ + + V + ++ VT L
Sbjct: 31 KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLGK 82
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella
pneumoniae [TaxId: 573]}
Length = 255
Score = 23.6 bits (50), Expect = 8.2
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMVLET 101
V I + A+ +++N GG V ++ V+D R+ E +T
Sbjct: 27 AVAIADYNDATAKAVASEINQA--GGHAVAVKVD-VSD-RDQVFAAVEQARKT 75
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), I [TaxId: 4076]}
Length = 258
Score = 23.5 bits (50), Expect = 9.3
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 90
VY R E++ ++ + + +L T+ +
Sbjct: 32 RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKL 73
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 259
Score = 23.4 bits (50), Expect = 9.9
Identities = 4/45 (8%), Positives = 14/45 (31%)
Query: 49 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR 93
++ R E + + ++ + F + S + +
Sbjct: 34 VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,327
Number of extensions: 23912
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 90
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)