BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4998
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 175/318 (55%), Gaps = 9/318 (2%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDT----KGKV 56
+AA+E H V LL K +Q T+ GFTPL VA + G RV +LLE D GK
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 57 KLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
L LH+ SP + + +TPLHIAA +A L+Q +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
N ++ +TPLH+A + G MV LL+SK AN + GLTPLH A+ GH V D+LI
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+ G + + T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISXXXXXXXXXXXXXXXXXXXXXXXKYRV 296
I+ LLL GA PN ++ G T L IA++LGYIS K+R+
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS----VTDVLKVVTDETSFVLVSDKHRM 414
Query: 297 VAPEAMQEVYMSDSEDEG 314
PE + E+ + SEDEG
Sbjct: 415 SFPETVDEI-LDVSEDEG 431
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 145/272 (53%), Gaps = 4/272 (1%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+A+ H +V+ LL +G + ++ TPL +A + GH V LL+N + K K
Sbjct: 20 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79
Query: 57 KLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
LH EN+ +P++ + + TPLHIAA G+ L++K A+
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
K TPLHVA K+GKV + ELL+ + A+ A ++GLTPLH A + +++ +L+
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+G + +S G+TPLHIA+ Q+ + R L++ G + NA + G TPLH A+Q+G
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
++ LLL A N G T L++ + G++
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 82/145 (56%)
Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
+TPLHVA G + +V+ L+ +GA+ TPLH AAR+GH V L++ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+K K TPLH A+ G NMV+ L+EN AN N T G+TPLH A+++G V + LL
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 244 AGAQPNATTNHGQTALNIAQKLGYI 268
A T G T L++A K G +
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKV 159
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 92/133 (69%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + +K K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+TPLH+A+ G L +V L++ GA+VNA GYTPLH A+++G + I+++LL AGA N
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 89/145 (61%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + K TPLH+A + G + +VE+L+ GA++ AK +DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AAR GH ++++L++ GA + +K K G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 77/123 (62%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K +TPLH+AA G+ I E+L++ A+VN + K TPLH+A + G + +VE+L+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GA++ AK +DG TPLH AAR GH ++++L++ GA + ++ K G T I+ G ++
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 206 RYL 208
L
Sbjct: 163 EIL 165
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K K G+TPLH+A+ G L +V L++ GA+VNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
YTPLH A+++G + I+++LL AGA NA G T L++A + G++
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 127
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 29/174 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + +DG+TPL +A ++GH +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------- 71
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K +TPLH+AA G+ I E+L++ A+VN + K
Sbjct: 72 --------------------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 111
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A + G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 112 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 29/142 (20%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+E H +V LL G + +DG+TPL +A ++GH +V VLL+
Sbjct: 53 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-------- 104
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+ K +TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 105 ---------------------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Query: 121 KHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 94/138 (68%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + +K K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+TPLH+A+ G L +V L++ GA+VNA GYTPLH A+++G + I+++LL AGA N
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 250 ATTNHGQTALNIAQKLGY 267
A G+T ++A + G+
Sbjct: 129 AQDKFGKTPFDLAIREGH 146
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + K TPLH+A + G + +VE+L+ GA++ AK +DG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AAR GH ++++L++ GA + +K K G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
A G TP A ++G I ++L
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 78/123 (63%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K +TPLH+AA G+ I E+L++ A+VN + K TPLH+A + G + +VE+L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GA++ AK +DG TPLH AAR GH ++++L++ GA + ++ K G TP +A G ++
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIA 150
Query: 206 RYL 208
L
Sbjct: 151 EVL 153
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 29/174 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + +DG+TPL +A ++GH +V VLL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------- 59
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K +TPLH+AA G+ I E+L++ A+VN + K
Sbjct: 60 --------------------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A + G + +VE+L+ GA++ A+ + G TP A R GH+++ ++L
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K K G+TPLH+A+ G L +V L++ GA+VNA G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
YTPLH A+++G + I+++LL AGA NA G T L++A + G++
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+E H +V LL G + +DG+TPL +A ++GH +V VLL+
Sbjct: 41 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-------- 92
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+ K +TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 93 ---------------------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 121 KHNITPLHVACKWGKVAMVELL 142
K TP +A + G + E+L
Sbjct: 132 KFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 91/133 (68%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + +K K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+TPLH+A+ G L +V L++ GA+VNA GYTPLH A+++G + I+++LL AGA N
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 250 ATTNHGQTALNIA 262
A G+T ++A
Sbjct: 129 AQDKFGKTPFDLA 141
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 90/145 (62%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + K TPLH+A + G + +VE+L+ GA++ AK +DG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AAR GH ++++L++ GA + +K K G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
A G TP A G I ++L
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 78/123 (63%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K +TPLH+AA G+ I E+L++ A+VN + K TPLH+A + G + +VE+L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GA++ AK +DG TPLH AAR GH ++++L++ GA + ++ K G TP +A G ++
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIA 150
Query: 206 RYL 208
L
Sbjct: 151 EVL 153
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K K G+TPLH+A+ G L +V L++ GA+VNA G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
YTPLH A+++G + I+++LL AGA NA G T L++A + G++
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 29/174 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + +DG+TPL +A ++GH +V VLL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------- 59
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K +TPLH+AA G+ I E+L++ A+VN + K
Sbjct: 60 --------------------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A + G + +VE+L+ GA++ A+ + G TP A +G++++ ++L
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+E H +V LL G + +DG+TPL +A ++GH +V VLL+
Sbjct: 41 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-------- 92
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+ K +TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 93 ---------------------DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 121 KHNITPLHVACKWGKVAMVELL 142
K TP +A G + E+L
Sbjct: 132 KFGKTPFDLAIDNGNEDIAEVL 153
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA GN + + LI+ A+VN TPLH A K G +V+LLISKGA++ AK DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA+ GH ++ +LI KGA + +K G TPLH A+ G +V+ L+ GA+VN
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
+ + G TPL A + G I+ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 84/137 (61%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G V+ LI GA++ A DG TPLH AA+ GH ++ +LI KGA + +K G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH A+ G +V+ L+ GA+VNA + G TPLH A+++G I+ LL+ GA N
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 250 ATTNHGQTALNIAQKLG 266
+ + G+T L++A++ G
Sbjct: 131 TSDSDGRTPLDLAREHG 147
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 74/122 (60%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH AA G+ I +LLI K A+VN + TPLH A K G +V+LLISKGA++ A
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 98
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
K DG TPLH AA+ GH ++ +LI KGA + + G TPL +A G +V+ L +
Sbjct: 99 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Query: 212 GA 213
G
Sbjct: 159 GG 160
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 29/181 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ + V+ L+ G + + DG TPL A ++GH +V +L+ +KG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI---SKGA------ 61
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K + TPLH AA G+ I +LLI K A+VN +
Sbjct: 62 --------------------DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 101
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
TPLH A K G +V+LLISKGA++ DG TPL A G++ ++ +L ++G
Sbjct: 102 DGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Query: 182 L 182
L
Sbjct: 162 L 162
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AA +G+ + + LIE GA + + G TPLH A+ G +V+ L+ GA+VNA + G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
TPLH A+++G I+ LL+ GA NA + G+T L+ A K G+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+E H +V+ L+SKG + DG TPL A ++GH +V +L+ +KG
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI---SKGA------ 94
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K + TPLH AA G+ I +LLI K A+VN
Sbjct: 95 --------------------DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDS 134
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIE 150
TPL +A + G +V+LL +G +E
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 86/122 (70%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
K K G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL A
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 245 GA 246
GA
Sbjct: 124 GA 125
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 86/122 (70%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA G+ + +LL++ A+VN + K+ TPLH+A + G + +V+LL+ GA++ A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
K ++G TPLH AAR+GH V+ +L+E GA + +K K G TPLH+A+ G L +V+ L+E
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 212 GA 213
GA
Sbjct: 124 GA 125
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 78/115 (67%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+G TPLH AAR+GH V+ +L+E GA + +K K G TPLH+A+ G L +V+ L+E GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
VNA G TPLH A++ G + ++ LLL AGA NA +G+T L++A + G++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 29/154 (18%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDVK 86
+G TPL +A + GH VV +LLE + K
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA-----------------------------DVNAK 31
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
+ TPLH+AA G+ + +LL++ A+VN + K+ TPLH+A + G + +V+LL+ G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
A++ AK ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 29/147 (19%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+ H VV+ LL G + ++G TPL +A + GH VV +LLE
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-------- 59
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+ K + TPLH+AA G+ + +LL++ A+VN +
Sbjct: 60 ---------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 121 KHNITPLHVACKWGKVAMVELLISKGA 147
K+ TPLH+A + G + +V+LL+ GA
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA GN + + LI+ A+VN TPLH A + G +V+LLISKGA++ AK DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA +GH V+ +LI KGA + +K G TPLH A+ G +V+ L+ GA+VN
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
+ + G TPL A + G ++ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 83/137 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G V+ LI GA++ A DG TPLH AA +GH V+ +LI KGA + +K G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH A+ G +V+ L+ GA+VNA + G TPLH A++ G ++ LL+ GA N
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 250 ATTNHGQTALNIAQKLG 266
+ + G+T L++A++ G
Sbjct: 131 TSDSDGRTPLDLAREHG 147
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 74/122 (60%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH AA G+ + +LLI K A+VN + TPLH A + G +V+LLISKGA++ A
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 98
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
K DG TPLH AA +GH V+ +LI KGA + + G TPL +A G +V+ L +
Sbjct: 99 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 212 GA 213
G
Sbjct: 159 GG 160
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 29/181 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ + V+ L+ G + + DG TPL A + GH VV +L+ +KG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI---SKGA------ 61
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K + TPLH AA G+ + +LLI K A+VN +
Sbjct: 62 --------------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 101
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
TPLH A + G +V+LLISKGA++ DG TPL A G++ V+ +L ++G
Sbjct: 102 DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161
Query: 182 L 182
L
Sbjct: 162 L 162
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AA +G+ + + LIE GA + + G TPLH A+ G +V+ L+ GA+VNA + G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
TPLH A++ G ++ LL+ GA NA + G+T L+ A + G+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 87/133 (65%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A+ G TPLH AA GH ++++L++ GA + + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ +G L +V L++NGA+VNAT G+TPLH A+ G + I+++LL GA N
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + TPLH+A G + +VE+L+ GA++ A + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + + GFTPLH+A+ G L +V L++ GA+VN
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
+ +S TPLH+AA G+ I E+L++ A+VN K TPLH+A +G + +VE+L+
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GA++ A G TPLH AA +GH ++++L++ GA + ++ K G T I+ G ++
Sbjct: 103 GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 206 RYL 208
L
Sbjct: 163 EIL 165
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 70/107 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + ++ +G TPLH+A+ G L +V L+++GA+VNA +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPLH A+ G + I+++LL GA NAT +G T L++A G++
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + + G TPL +A +GH +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + TPLH+AA YG+ I E+L++ A+VN
Sbjct: 69 -------------------HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+ TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA + H +V LL G + A + G TPL +A GH +V VLL+N
Sbjct: 53 LAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN---------- 102
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSH--FTPLHIAAHYGNTNIAELLIQKHANVNN 118
DV + FTPLH+AA G+ I E+L++ A+VN
Sbjct: 103 ---------------------GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 89/133 (66%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A+ G TPLH AA GH ++++L++ GA + +K G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L++NGA+VNA+ + G+TPLH A+++G + I+++LL GA N
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 82/137 (59%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + TPLH+A +G + +VE+L+ GA++ AK G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
+TPLH AAR GH ++++L++ GA + + GFTPLH+A+ G L +V L++NGA+VN
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 77/106 (72%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + ++ G+TPLH+A+HFG L +V L++NGA+VNA +LG
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
TPLH A+++G + I+++LL GA NA+ +HG T L++A K G++
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL 126
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 75/118 (63%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
+TPLH+AAH+G+ I E+L++ A+VN + +TPLH+A + G + +VE+L+ GA++
Sbjct: 48 WTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
A G TPLH AA+ GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 29/174 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G+TPL +A GH +V VLL+N
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA--------- 71
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ K + TPLH+AA G+ I E+L++ A+VN
Sbjct: 72 --------------------DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS 111
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
H TPLH+A K G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + G TPL +A ++GH +V VLL+N
Sbjct: 53 LAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN---------- 102
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVK-SNSH-FTPLHIAAHYGNTNIAELLIQKHANVNN 118
DV S+SH FTPLH+AA G+ I E+L++ A+VN
Sbjct: 103 ---------------------GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 88/133 (66%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G TPLH AA SGH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+TPLH+A+++G L +V L++NGA+VNA + G TPLH A++ G + I+++LL GA N
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN TPLH+A G + +VE+L+ GA+++A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + + G TPLH+A+ +G L +V L+++GA+VN
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 75/122 (61%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
N+ TPLH+AA+ G+ I E+L++ A+V+ TPLH+A WG + +VE+L+ G
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR 206
A++ A DG+TPLH AA+ G+ ++++L++ GA + ++ K G T I+ G ++
Sbjct: 104 ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 207 YL 208
L
Sbjct: 164 IL 165
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 70/106 (66%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G TPLH+A++ G L +V L+++GA+V+A+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
YTPLH A+ G + I+++LL GA NA + G T L++A K GY+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYL 126
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
AA+ D VR L++ G + A G TPL +A GH +V VLL++ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 58 LPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
LH+ +N + + TPLH+AA +G I E+L++ A+VN
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 118 NQAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G TPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+HFG L +V L++NGA+VNA + G TPLH A+ +G + I+++LL GA N
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN TPLH+A WG + +VE+L+ GA++ A G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + +K G TPLH+A++ G L +V L++ GA+VN
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISINNG 157
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 76/118 (64%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
+TPLH+AA++G+ I E+L++ A+VN TPLH+A +G + +VE+L+ GA++
Sbjct: 48 WTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
AK +G+TPLH AA GH ++++L++ GA + ++ K G T I+ + G ++ L
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 71/107 (66%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G+TPLH+A+++G L +V L++NGA+VNA LG
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPLH A+ G + I+++LL GA NA ++G T L++A G++
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKG 54
AA+ D VR L++ G + A G+TPL +A GH +V VLL+N DT G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 55 KVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
L H+ +N + K ++ TPLH+AA+ G+ I E+L++ A
Sbjct: 81 STPL---HLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELL 142
+VN Q K T ++ G + E+L
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
+AA H +V LL G + ++G TPL +A +GH +V VLL+
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 87/133 (65%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A DG TPLH AA +GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L+++GA+VNA N G+TPLH A++ G + I+++LL GA N
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 83/145 (57%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN TPLH+A G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
+TPLH AA +GH ++++L++ GA + + G TPLH+A+ +G L +V L+++GA+VN
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 73/122 (59%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
N +TPLH+AA G+ I E+L++ A+VN ITPLH+A G + +VE+L+ G
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR 206
A++ A DG TPLH AA+ GH ++++L++ GA + ++ K G T I+ G ++
Sbjct: 104 ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 207 YL 208
L
Sbjct: 164 IL 165
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G+TPLH+A+ G L +V L++NGA+VNA+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
TPLH A+ G + I+++LL GA NA N G T L++A K G++
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + DG+TPL +A GH +V VLL+N
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN----------- 69
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSN--SHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
DV ++ + TPLH+AA G+ I E+L++ A+VN
Sbjct: 70 --------------------GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A K+G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + + G TPL +A GH +V VLL+
Sbjct: 53 LAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKS--NSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
H DV + N TPLH+AA YG+ I E+L++ A+VN
Sbjct: 102 --------------------HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 85/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +LI+ GA++ A GLTPLH AA SGH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
FTPLH+A+ G L +V L++ GA+VNA G TPLH A+ +G + I+++LL GA N
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +LI A+VN +TPLH+A G + +VE+L+ GA+++A G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA +GH ++++L++ GA + + G TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 71/120 (59%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
N+ TPLH+AA G+ I E+L++ A+V+ + TPLH+A G + +VE+L+ G
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR 206
A++ A G TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ +
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + ILI GA + + G TPLH+A+ G L +V L+++GA+V+A G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
+TPLH A+ G + I+++LL GA NA G T L++A G++
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHL 126
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 33/172 (19%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL +A GH +V VLL+
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNS--HFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + FTPLH+AA G+ I E+L++ A+VN
Sbjct: 69 -------------------HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + A GFTPL +A GH +V VLL+
Sbjct: 53 LAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKS--NSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+ DV + + TPLH+AA G+ I E+L++ A+VN
Sbjct: 102 --------------------YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 119 QAKHNITPLHVACKWG 134
Q K T ++ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A+ G TPLH AA +GH ++++L++ GA + + AG
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPL +A+ FG L +V L++NGA+VNA G+TPLH A+ G + I+++LL GA N
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + TPLH+A G + +VE+L+ GA++ A G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
+TPL AA GH ++++L++ GA + + G TPLH+A+ FG L +V L++NGA+VN
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + ++ +G+TPLH+A+ G L +V L++NGA+VNA + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPL A+ G + I+++LL GA NA G T L++A G++
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 72/120 (60%)
Query: 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
S +TPLH+AA G+ I E+L++ A+VN +TPL +A +G + +VE+L+ GA+
Sbjct: 46 SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ A +G TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G+TPL +A GH +V VLL+N
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN----------- 69
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSH--FTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
DV + H TPL +AA +G+ I E+L++ A+VN
Sbjct: 70 --------------------GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A +G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + G TPL +A GH +V VLL+N
Sbjct: 53 LAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------- 102
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSH--FTPLHIAAHYGNTNIAELLIQKHANVNN 118
DV +N TPLH+AA +G+ I E+L++ A+VN
Sbjct: 103 ---------------------GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G+TPLH +GH +I++L++ A + + K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+TPLH+A++ G L +V L++ GA+VNA GYTPLH A++ G + I+++LL GA N
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN ITPLH+ G + ++E+L+ A++ A + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + + G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Query: 84 DVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
DV +N F TPLH+ + G+ I E+L++ A+VN K TPLH+A G + +VE+
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
L+ GA++ A G TPLH AA GH ++++L++ GA + ++ K G T I+ G
Sbjct: 99 LLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 202 LNMVRYL 208
++ L
Sbjct: 159 EDLAEIL 165
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G TPLH+ + G L ++ L++ A+VNA+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
+TPLH A+ +G + I+++LL GA NA G T L++A + G++
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLE 127
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL + + GH ++ VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSN--SHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
++ DV ++ S +TPLH+AA+ G+ I E+L++ A+VN
Sbjct: 69 -------------------YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A + G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
+AA H +V LL G + G+TPL +A + GH +V VLL+
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA GN + + L++ A+VN TPLH+A + G +V+LL+S+GA+ AK DG
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA +GH V+ +L+ +GA +K G TPLH+A+ G +V+ L+ GA+ N
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
+ + G TPL A + G ++ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 83/137 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G V+ L+ GA++ A DG TPLH AA +GH V+ +L+ +GA +K G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G +V+ L+ GA+ NA + G TPLH A++ G ++ LLL GA PN
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 250 ATTNHGQTALNIAQKLG 266
+ + G+T L++A++ G
Sbjct: 131 TSDSDGRTPLDLAREHG 147
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA G+ + +LL+ + A+ N + TPLH+A + G +V+LL+S+GA+ A
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 98
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
K DG TPLH AA +GH V+ +L+ +GA + G TPL +A G +V+ L +
Sbjct: 99 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 212 GA 213
G
Sbjct: 159 GG 160
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 29/181 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ + V+ LL G + + DG TPL +A + GH VV +LL
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA--------- 61
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
P+ K + TPLH+AA G+ + +LL+ + A+ N +
Sbjct: 62 --------------------DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 101
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
TPLH+A + G +V+LL+S+GA+ DG TPL A G++ V+ +L ++G
Sbjct: 102 DGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161
Query: 182 L 182
L
Sbjct: 162 L 162
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AA +G+ + + L+E GA + + G TPLH+A+ G +V+ L+ GA+ NA + G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
TPLH A++ G ++ LLL GA PNA + G+T L++A + G+
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 115
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+ H VV+ LLS+G + DG TPL +A + GH VV +LL
Sbjct: 43 LAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-------- 94
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
P+ K + TPLH+AA G+ + +LL+ + A+ N
Sbjct: 95 ---------------------DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIE 150
TPL +A + G +V+LL +G +E
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 87/138 (63%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + +TPLH+A G++ +VE+L+ GA++ A G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
+TPLH AA GH ++++L++ GA + + +AG+TPLH+A+ GQL +V L+++GA+VN
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 217 ATTNLGYTPLHQASQQGR 234
A LG T + QG+
Sbjct: 133 AQDALGLTAFDISINQGQ 150
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A G+ V +L++ GA++ A +GLTPLH AA +G ++++L++ GA + + AG
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A++ G L +V L+++GA+VNA G+TPLH A+ G++ I+++LL GA N
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 250 ATTNHGQTALNIA 262
A G TA +I+
Sbjct: 133 AQDALGLTAFDIS 145
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 70/118 (59%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPLH+AA G I E+L++ A+VN ITPLH+A G + +VE+L+ GA++
Sbjct: 40 LTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
A R G TPLH AA SG ++++L++ GA + ++ G T I+ + GQ ++ L
Sbjct: 100 AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AA +G D+ + IL+ GA + + G TPLH+A+ GQL +V L++NGA+VNA+ + G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPLH A+ G + I+++LL GA NA G T L++A G +
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA D VR L++ G + ++G TPL +A G +V VLL+N
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA--------- 63
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+ ++ TPLH+AA+ G+ I E+L++ A+VN +
Sbjct: 64 --------------------DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A G++ +VE+L+ GA++ A+ GLT + G +++ +IL
Sbjct: 104 AGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 83/145 (57%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA GN + + L++ A+ N TPLH A + G +V+LL+SKGA+ AK DG
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA +GH ++ +L+ KGA +K G TPLH A+ G +V+ L+ GA+ N
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
+ + G TPL A + G I+ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G V+ L+ GA+ A DG TPLH AA +GH ++ +L+ KGA +K G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH A+ G +V+ L+ GA+ NA + G TPLH A++ G I+ LLL GA PN
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 250 ATTNHGQTALNIAQKLG 266
+ + G+T L++A++ G
Sbjct: 131 TSDSDGRTPLDLAREHG 147
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 76/136 (55%)
Query: 78 ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA 137
EN P+ + TPLH AA G+ I +LL+ K A+ N + TPLH A + G
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
+V+LL+SKGA+ AK DG TPLH AA +GH ++ +L+ KGA + G TPL +A
Sbjct: 85 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 198 HFGQLNMVRYLVENGA 213
G +V+ L + G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 29/181 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ + V+ LL G + + DG TPL A + GH +V +LL +KG
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL---SKGA------ 61
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
P+ K + TPLH AA G+ I +LL+ K A+ N +
Sbjct: 62 --------------------DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 101
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
TPLH A + G +V+LL+SKGA+ DG TPL A G++ ++ +L ++G
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Query: 182 L 182
L
Sbjct: 162 L 162
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AA +G+ + + L+E GA + G TPLH A+ G +V+ L+ GA+ NA + G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
TPLH A++ G I+ LLL GA PNA + G+T L+ A + G+
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 115
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 84/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G TPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L++NGA+VNA + G+TPLH A+ G + I+++LL GA N
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 80/137 (58%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN TPLH+A +G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
+TPLH AA GH V+++L++ GA + + GFTPLH+A++ G L +V L+++GA+VN
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 74/107 (69%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G+TPLH+A++FG L +V L++NGA+VNA +LG
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPLH A+ +G + ++++LL GA NA ++G T L++A +G++
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 84 DVKSNSH--FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
DV ++ H +TPLH+AA++G+ I E+L++ A+VN +TPLH+A G + +VE+
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
L+ GA++ A +G TPLH AA GH ++++L++ GA + ++ K G T I+ G
Sbjct: 99 LLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 202 LNMVRYL 208
++ L
Sbjct: 159 EDLAEIL 165
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
AA+ D VR L++ G + + G+TPL +A GH +V VLL+N + +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 58 LPALHIXXXXXXXXXXXXXXENDHSPDVKSNSH--FTPLHIAAHYGNTNIAELLIQKHAN 115
+ LH+ +N DV +N H FTPLH+AA+ G+ I E+L++ A+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKN--GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELL 142
VN Q K T ++ G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 33/111 (29%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H VV LL G + +GFTPL +A GH +V VLL+
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK----------- 134
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELL 109
H DV + F T I+ GN ++AE+L
Sbjct: 135 --------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 85/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A+ G TPLH AAR GH ++++L++ GA + + +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L++ GA+VNA +G TPLH A+ G + I+++LL GA N
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 79/137 (57%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + + TPLH+A + G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA+ GH ++++L++ GA + + G TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA G+ I E+L++ A+VN TPLH+A K G + +VE+L+ GA++ A
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA 108
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
G TPLH AA +GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 109 DDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + ++ G TPLH+A+ G L +V L++NGA+VNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
TPLH A+++G + I+++LL GA NA G T L++A G++
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 29/174 (16%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL +A + GH +V VLL+N + AL
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN----GADVNAL 76
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
S TPLH+AA G+ I E+L++ A+VN
Sbjct: 77 DF-------------------------SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDT 111
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+ H +V LL G + G TPL +A ++GH +V VLL+
Sbjct: 53 LAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNN 118
+ DV ++ TPLH+AA G+ I E+L++ A+VN
Sbjct: 102 --------------------YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 84/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G TPLH AA GH ++++L++ GA + ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+TPLH+A+ G L +V L++ GA+VNA G TPLH A+ +G + I+++LL GA N
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 83/145 (57%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN TPLH+A G +VE+L+ GA++ A+ DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA +GH ++++L++ GA + ++ G TPLH+A+ G L +V L+++GA+VN
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 71/117 (60%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA G+ I E+L++ A+VN + TPLH+A G + +VE+L+ GA++ A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ GLTPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 109 QDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G TPLH+A+ G +V L+++GA+VNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
+TPLH A+ G + I+++LL GA NA +G T L++A G++
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + + G TPL +A GH +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + +TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 69 -------------------HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+ +TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + DG+TPL +A GH +V VLL+
Sbjct: 53 LAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNN 118
+ DV + + TPLH+AA G+ I E+L++ A+VN
Sbjct: 102 --------------------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 83/133 (62%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A GLTPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L+++GA+VNA G TPLH A+ G + I+++LL GA N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN +TPLH+A +G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + + G TPLH+A+ G L +V L+++GA+VN
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + +G TPLH+A+ +G L +V L+++GA+VNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
TPLH A+ G + I+++LL GA NA G T L++A +G++
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%)
Query: 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
S TPLH+AA YG+ I E+L++ A+VN TPLH+A G + +VE+L+ GA+
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ A G TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL +A GH +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNS--HFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + TPLH+AA G+ I E+L++ A+VN
Sbjct: 69 -------------------HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + G TPL +A GH +V VLL+
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNN 118
H DV + + TPLH+AA G+ I E+L++ A+VN
Sbjct: 102 --------------------HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 83/133 (62%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A GLTPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L+++GA+VNA G TPLH A+ G + I+++LL GA N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN +TPLH+A +G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + + G TPLH+A+ G L +V L+++GA+VN
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 217 ATTNLGYTPLHQASQQG 233
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 69/106 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + +G TPLH+A+ +G L +V L+++GA+VNA +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
TPLH A+ G + I+++LL GA NA G T L++A +G++
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%)
Query: 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
S TPLH+AA YG+ I E+L++ A+VN TPLH+A G + +VE+L+ GA+
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ A G TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL +A GH +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + TPLH+AA G+ I E+L++ A+VN
Sbjct: 69 -------------------HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + G TPL +A GH +V VLL+
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNN 118
H DV + + TPLH+AA G+ I E+L++ A+VN
Sbjct: 102 --------------------HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 85/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G TPLH AA++GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L+++GA+VNA G+TPLH A+ G + I+++LL GA N
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
A G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN TPLH+A K G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA +GH ++++L++ GA + +K GFTPLH+A++ G L +V L++ GA+VN
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 71/117 (60%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA G+ I E+L++ A+VN + TPLH+A G + +VE+L+ GA++ A
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
K +G TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + G TPLH+A+ G L +V L++ GA+VNA N G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPLH A+ G + I+++LL GA NA G T L++A G++
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE--NDTKGKVKLP 59
AA+ D VR L++ G + G TPL +A + GH +V VLL+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 60 A--LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
A LH+ ++ + K FTPLH+AA+ G+ I E+L++ A+VN
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 118 NQAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
+AA H +V LL G + +GFTPL +A GH +V VLL+
Sbjct: 86 LAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 81/137 (59%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA+ A G TPLH AA GH ++++L+ GA + + G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPLH+A+ G L +V L++ GA+VNA G TPL+ A+ G + I+++LL GA N
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 250 ATTNHGQTALNIAQKLG 266
A G+TA +I+ +G
Sbjct: 129 AQDKFGKTAFDISIDIG 145
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 78/130 (60%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+ N + TPLH+A G + +VE+L+ GA++ A +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
TPLH AA GH ++++L++ GA + +K G TPL++A+++G L +V L+++GA+VN
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 217 ATTNLGYTPL 226
A G T
Sbjct: 129 AQDKFGKTAF 138
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 84 DVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
D + H+ TPLH+AA G+ I E+L++ A+VN + TPLH+A G + +VE+
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
L+ GA++ AK G+TPL+ AA GH ++++L++ GA + ++ K G T I+ G
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGN 146
Query: 202 LNMVRYL 208
++ L
Sbjct: 147 EDLAEIL 153
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + G TPLH+A+ G L +V L+ NGA+VNA G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
TPLH A+ G + I+++LL GA NA G T L +A G++
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLE 115
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL +A GH +V VLL N
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN----------- 57
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKS--NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
DV + + TPLH+AA G+ I E+L++ A+VN +
Sbjct: 58 --------------------GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
ITPL++A WG + +VE+L+ GA++ A+ + G T + G++++ +IL
Sbjct: 98 DATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
MAA H +V LL G + +G TPL +A GH +V VLL+
Sbjct: 41 MAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK----------- 89
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+ DV K + TPL++AA++G+ I E+L++ A+VN
Sbjct: 90 --------------------YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q K T ++ G + E+L
Sbjct: 130 QDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
+PLH AA G+ +I +L+Q AN++ ++ TPL A + + V+ LI GA ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
K +G T LH AA+ GH V+ L+ G + + G+TP+ A+ + +++V+ L+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
G+++N N LH A+ G V I ++LL A +A HG + L+IA +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
H N + ++ +PLH A + G V + +L+ GANI+ + D TPL AA + H +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQASQ 231
LI+ GA + K G T LH+A+ G +V+YL+ NG +VN + G+TP+ A++
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
V ++ LLL G+ N N L+ A G +
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 30/235 (12%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ H + L+ G N +ED TPL A + H V L +K AL
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL--------IKAGAL 69
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK-HANVNNQA 120
D K T LH+AA G+ + + L+ +VN Q
Sbjct: 70 ---------------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
TP+ A ++ V +V+LL+SKG++I + + LH AA SG ++ +IL+
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
L++ G +PLHIA+ + + V + ++V G TPL AS +V
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 30/165 (18%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATED-GFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
+AA++ H VV+YLLS G +D G+TP+ A + H +V +LL +KG
Sbjct: 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL---SKGS---- 135
Query: 60 ALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
+++ N LH AA G +IAE+L+ +++
Sbjct: 136 ----------------------DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
H +PLH+A + + V L +S+ +++ K ++G TPL CA+
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 30/252 (11%)
Query: 22 TLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDH 81
T A EDG TPL +A+ QG+ LPA+H +
Sbjct: 3 TRADEDGDTPLHIAVVQGN-----------------LPAVH--------RLVNLFQQGGR 37
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
D+ +N TPLH+A ++ LL+ A+ +H T H+AC+ +
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 142 LISKGA----NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS-KTKAGFTPLHIA 196
L+ A ++EA+ DGLT LH A + + +L+E+GA + + K+G +PL A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
L+MV+ L+++GANVNA G + LH AS +G + ++ L+ +GA + H
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 257 TALNIAQKLGYI 268
T L +A+ I
Sbjct: 218 TPLMVARSRRVI 229
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNN-QAKHNITPLHVACKWGKVAMVELLISKGANI 149
T LH+A + +LL+++ A+++ K +PL A + ++MV+LL+ GAN+
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 150 EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR 206
A+ G + LH A+ G ++ L+ GA K TPL +A ++++R
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
T LH A G+T I E L+Q VN++ +PLH+A G+ +V+ L+ KGA + A
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
++G TPLH AA + +L+E GA +K T +H A+ G L M+ L+
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
A+ N G TPLH A + RV LL+ GA +T L +A+ LG I
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 220
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D T LH A +GH +++ L++ G + K AG++PLHIA+ G+ +V+ L+ GA
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
VNA G TPLH A+ + R I +LL GA P+A ++ TA++ A G
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 20 NQTLAT---EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXX 76
+++LAT +D T L A GH +V LL+ + +P
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPV---------------- 67
Query: 77 XENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKV 136
ND K ++ ++PLHIAA G I + L+ K A VN ++ TPLH A +
Sbjct: 68 --ND-----KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH 120
Query: 137 AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
+ +L+ GAN +AK T +H AA G+ +I IL+ A+ + G TPLH+A
Sbjct: 121 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
++ + LV GA++ TPL Q ++ G LI+ ++
Sbjct: 181 CDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLILKRMV 225
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLL----ENDTKGKVK 57
A H +V +LL G + G++PL +A G D +V LL + + +
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 107
Query: 58 LPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
LH E +PD K + T +H AA GN + +L+ A+ N
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 167
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
Q TPLH+AC +V +LL+S+GA+I + ++ TPL A+ G ++ ++E
Sbjct: 168 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ-VAKGGLGLILKRMVE 226
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
T LH A G+T I E L+Q VN++ +PLH+A G+ +V+ L+ KGA + A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
++G TPLH AA + +L+E GA +K T +H A+ G L M+ L+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
A+ N G TPLH A + RV LL+ GA +T L +A+ LG I
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D T LH A +GH +++ L++ G + K AG++PLHIA+ G+ +V+ L+ GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
VNA G TPLH A+ + R I +LL GA P+A ++ TA++ A G
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 20 NQTLAT---EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXX 76
+++LAT +D T L A GH +V LL+ + +P
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPV---------------- 66
Query: 77 XENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKV 136
ND K ++ ++PLHIAA G I + L+ K A VN ++ TPLH A +
Sbjct: 67 --ND-----KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH 119
Query: 137 AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
+ +L+ GAN +AK T +H AA G+ +I IL+ A+ + G TPLH+A
Sbjct: 120 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
++ + LV GA++ TPL Q ++ G LI+ ++
Sbjct: 180 CDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLILKRMV 224
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLL----ENDTKGKVK 57
A H +V +LL G + G++PL +A G D +V LL + + +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 106
Query: 58 LPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
LH E +PD K + T +H AA GN + +L+ A+ N
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 166
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
Q TPLH+AC +V +LL+S+GA+I + ++ TPL A
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+G TPLH AAR+GH V+ +L+E GA + +K K G TPLH+A+ G L +V+ L+E GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 64/89 (71%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA 213
K K G TPLH+A+ G L +V+ L+E GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 64/89 (71%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA G+ + +LL++ A+VN + K+ TPLH+A + G + +V+LL+ GA++ A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGA 180
K ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 249 NATTNHGQTALNIAQKLGYIS 269
NA +G+T L++A + G++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLE 82
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 29/121 (23%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDVK 86
+G TPL +A + GH VV +LLE + K
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA-----------------------------DVNAK 31
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
+ TPLH+AA G+ + +LL++ A+VN + K+ TPLH+A + G + +V+LL+ G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 147 A 147
A
Sbjct: 92 A 92
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+ H VV+ LL G + ++G TPL +A + GH VV +LLE
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-------- 59
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQ 111
+ K + TPLH+AA G+ + +LL++
Sbjct: 60 ---------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%)
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
VN ++ +PLHVA G+ ++ LL+ GAN A+ D PLH A + GH V+ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
++ A K +G TPL A G +V L+++GA++NA+ N G T LH+A + V
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQK 264
+++LLL GA +TA++ A++
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+V S +PLH+AA +G ++ LL++ AN + PLH+AC+ G +V+ L+
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
A K G TPL A GH ++ +L++ GA++ + G T LH A +
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+V L+ +GA+V T + A Q +++
Sbjct: 200 VVELLLLHGASVQVLNKRQRTAVDCAEQNSKIM 232
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 128 HVACKWGKVAMVELLISK----GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
H C+ K A + ++K G + ++DG +PLH AA G ++I +L++ GA
Sbjct: 54 HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG 113
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
++ PLH+A G +V+ L+++ A N G TPL A G ++ LLL
Sbjct: 114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ 173
Query: 244 AGAQPNATTNHGQTALNIA 262
GA NA+ N G TAL+ A
Sbjct: 174 HGASINASNNKGNTALHEA 192
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA ++ LL G N D PL +A QQGH +VV LL+++ K
Sbjct: 92 VAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK------- 144
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
P+ K S TPL A G+ + LL+Q A++N
Sbjct: 145 ----------------------PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
T LH A V +VELL+ GA+++ + T + CA
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
+G VN T+ G +PLH A+ GR +I LLL GA A L++A + G+
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
T LH A G+T I E L+Q VN++ +PLH+A G+ +V+ L+ KGA++ A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
++G TPLH AA + +L+E GA +K T +H A+ G L MV L+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
A+ N G TPLH A + RV L+ GA +T L +A+ LG I
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D T LH A +GH +++ L++ G + K AG++PLHIA+ G+ +V+ L+ GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
+VNA G TPLH A+ + R I +LL GA P+A ++ TA++ A G
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K ++ ++PLHIAA G I + L+ K A+VN ++ TPLH A + + +L+
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GAN +AK T +H AA G+ ++ IL+ A+ + G TPLH+A ++
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
++LV GA++ TPL Q ++ G LI+ L
Sbjct: 189 KFLVTQGASIYIENKEEKTPL-QVAKGGLGLILKRL 223
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKG------- 54
A H +V +LL G + G++PL +A G D +V LL KG
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---VKGAHVNAVN 103
Query: 55 KVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
+ LH E +PD K + T +H AA GN + +L+ A
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
+ N Q TPLH+AC +V + L+++GA+I + ++ TPL A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 1/178 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
T LH A G+T I E L+Q VN++ +PLH+A G +V+ L+ KGA++ A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
++G TPLH AA + +L+E GA +K T +H A+ G L MV L+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
A+ N G TPLH A + RV L+ GA +T L +A+ LG I
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D T LH A +GH +++ L++ G + K AG++PLHIA+ G +V+ L+ GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
+VNA G TPLH A+ + R I +LL GA P+A ++ TA++ A G
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K ++ ++PLHIAA G I + L+ K A+VN ++ TPLH A + + +L+
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GAN +AK T +H AA G+ ++ IL+ A+ + G TPLH+A ++
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
++LV GA++ TPL Q ++ G LI+ L
Sbjct: 189 KFLVTQGASIYIENKEEKTPL-QVAKGGLGLILKRL 223
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKG------- 54
A H +V +LL G + G++PL +A G D +V LL KG
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL---VKGAHVNAVN 103
Query: 55 KVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
+ LH E +PD K + T +H AA GN + +L+ A
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
+ N Q TPLH+AC +V + L+++GA+I + ++ TPL A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + + G TPLH+A+ G L +V L++ GA+VNA N G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH A+ +G + I+++LL GA NA G+TA +I+
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 64/104 (61%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A DGLTPLH AA+ GH ++++L++ GA + ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
TPLH+A+ G L +V L+++GA+VNA G T + G
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + +TPLH+A + G + +VE+L+ GA++ A+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPLH+AA G+ I E+L++ A+VN + ITPLH+A G + +VE+L+ GA++
Sbjct: 48 LTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 151 AKTRDGLTPLHCAARSGHDNVIDIL 175
A+ + G T + +G++++ +IL
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + EDG TPL +A Q GH +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
+ DV + +F TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 69 -------------------YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA G TPLH A+Q G + I+++LL GA NA N G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 256 QTALNIAQKLGYIS 269
T L++A G++
Sbjct: 81 ITPLHLAAIRGHLE 94
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 33/111 (29%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AAQ H +V LL G + G TPL +A +GH +V VLL+
Sbjct: 53 LAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELL 109
H DV + F T I+ GN ++AE+L
Sbjct: 102 --------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 64/95 (67%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPLH A K G V+ L+SKGA++ A+++DG TPLH AA++GH ++ +L+ KGA + +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
++K G TP H+A G +V+ L GA+VNA +
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 62/100 (62%)
Query: 153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
++DG TPLH AA++GH + L+ KGA + +++K G TPLH+A+ G +V+ L+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
A+VNA + G TP H A + G I+ LL GA NA +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 64/95 (67%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH AA G+ + L+ K A+VN ++K TPLH+A K G +V+LL++KGA++ A
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
+++DG TP H A ++GH ++ +L KGA + +++
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
+K G TPLH A+ G V+ L+ GA+VNA + G TPLH A++ G I+ LLL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 246 AQPNATTNHGQTALNIAQKLGY 267
A NA + G T ++A+K G+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGH 87
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 29/131 (22%)
Query: 23 LATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHS 82
++DG TPL A + GH V LL +KG
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLL---SKGA--------------------------D 34
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
+ +S TPLH+AA G+ I +LL+ K A+VN ++K TP H+A K G +V+LL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 143 ISKGANIEAKT 153
+KGA++ A++
Sbjct: 95 DAKGADVNARS 105
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 29/116 (25%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ H V+ LLSKG + ++DG TPL +A + GH +V +LL KG
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL---AKGA------ 66
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
+ +S TP H+A G+ I +LL K A+VN
Sbjct: 67 --------------------DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKG 54
+AA+ H +V+ LL+KG + ++DG TP +A + GH +V +L D KG
Sbjct: 48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL---DAKG 98
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 101 GNTNIAELLIQKHANVNNQAK-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
GN L + N NQ H +PLH AC+ G+ A+VE+LI +GA I R TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
LH AA GH +++ L++ A + + + G PLH A +GQ + LV NGA V+
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 220 NLGYTPLHQASQQGRVLI 237
G P+ +A R L+
Sbjct: 136 KYGEMPVDKAKAPLRELL 153
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSK 185
+ C+ G V L + N + D G +PLH A R G V+++LI +GA +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
+ TPLH+A+ G ++V+ L++ A++NA G PLH A G+ + + L+ G
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 246 AQPNATTNHGQTALNIAQ 263
A + +G+ ++ A+
Sbjct: 129 ALVSICNKYGEMPVDKAK 146
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
F+PLH A G + + E+LI + A +N + + TPLH+A G +V+ L+ A+I
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
A G PLH A G D V + L+ GA + K G P+ A
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 11 VRYLLSKGGNQTLATED-GFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXX 69
VR L N +D GF+PL A ++G VV +L+ +
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---------------- 64
Query: 70 XXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHV 129
+V + TPLH+AA +G+ +I + L+Q A++N +H PLH
Sbjct: 65 -------------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHY 111
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
AC WG+ + E L++ GA + + G P+
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 205 VRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
VR ++N N +N + G++PLH A ++GR ++++L+ GA+ N T L++A
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 264 KLGY 267
G+
Sbjct: 81 SHGH 84
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 33/149 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
A +E VV L+ +G + TPL +A GH +V LL+ K + A
Sbjct: 45 WACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY----KADINA 100
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+ N+H PLH A +G +AE L+ A V+
Sbjct: 101 V-----------------NEHGN--------VPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANI 149
K+ P+ A K + ELL + +
Sbjct: 136 KYGEMPVDKA----KAPLRELLRERAEKM 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 101 GNTNIAELLIQKHANVNNQAK-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
GN L + N NQ H +PLH AC+ G+ A+VE+LI +GA I R TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
LH AA GH +++ L++ A + + + G PLH A +GQ + LV NGA V+
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 220 NLGYTPLHQASQQGRVLI 237
G P+ +A R L+
Sbjct: 131 KYGEMPVDKAKAPLRELL 148
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAAL 182
+ + C+ G V L + N + D G +PLH A R G V+++LI +GA +
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
+ TPLH+A+ G ++V+ L++ A++NA G PLH A G+ + + L+
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 243 GAGAQPNATTNHGQTALNIAQ 263
GA + +G+ ++ A+
Sbjct: 121 ANGALVSICNKYGEMPVDKAK 141
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
F+PLH A G + + E+LI + A +N + + TPLH+A G +V+ L+ A+I
Sbjct: 35 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
A G PLH A G D V + L+ GA + K G P+ A
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 11 VRYLLSKGGNQTLATED-GFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXX 69
VR L N +D GF+PL A ++G VV +L+ +
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---------------- 59
Query: 70 XXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHV 129
+V + TPLH+AA +G+ +I + L+Q A++N +H PLH
Sbjct: 60 -------------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHY 106
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
AC WG+ + E L++ GA + + G P+
Sbjct: 107 ACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 205 VRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
VR ++N N +N + G++PLH A ++GR ++++L+ GA+ N T L++A
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 264 KLGY 267
G+
Sbjct: 76 SHGH 79
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 33/145 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
A +E VV L+ +G + TPL +A GH +V LL+ K + A
Sbjct: 40 WACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY----KADINA 95
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+ N+H PLH A +G +AE L+ A V+
Sbjct: 96 V-----------------NEHGN--------VPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 121 KHNITPLHVACKWGKVAMVELLISK 145
K+ P+ A K + ELL +
Sbjct: 131 KYGEMPVDKA----KAPLRELLRER 151
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%)
Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
++ LL N A TPLH AA ++ +L++ GA +++K K G PLH A
Sbjct: 40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99
Query: 198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT 257
+G + L+++GA VNA +TPLH+A+ + RV + LLL GA P HG++
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159
Query: 258 ALNIA 262
A+++A
Sbjct: 160 AVDMA 164
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 96/237 (40%), Gaps = 59/237 (24%)
Query: 81 HSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
H DV K PLH A YG+ + ELL++ A VN TPLH A +V +
Sbjct: 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV 139
Query: 139 VELLISKGA-----NIEAKTRDGLTP---------------------------------- 159
LL+S GA N K+ + P
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 160 ---------------LHCAARSGH---DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
LHCA S H V ++L+ KGA + K K TPLH+A+
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
+++ L ++GA +NA +LG T LH+A+ G + LLL G+ P+ + G TA
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 79 NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
N H+ D + + TPLH+AA Y I +LL+Q A+V+ + K + PLH AC +G +
Sbjct: 50 NCHASDGRKS---TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEV 106
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
ELL+ GA + A TPLH AA V +L+ GA
Sbjct: 107 TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 119 QAKHNITPLHVAC-----KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
Q + + T LH A K +VA ELL+ KGAN+ K +D +TPLH AA H++V++
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVA--ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
+L + GA + + G T LH A+ G L R L+ G++ + + G+T A+Q G
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMG 320
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
N +A+ TPLH A+ RV I+ LLL GA +A G L+ A G+
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K + G TPL++A+ G L +V L++NGA+VNA +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
+TPLH A+ G + I ++LL GA NA G+TA +I+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK GLTPL+ A GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
FTPLH+A+ G L + L+++GA+VNA G T
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + ++ +TPL++A G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AA GH + ++L++ GA + ++ K G T I+ G ++ L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + E G TPL +A GH +V VLL+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN----------- 69
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSH--FTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
DV + FTPLH+AA G+ IAE+L++ A+VN Q
Sbjct: 70 --------------------GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K TPL++A +G+ I E+L++ A+VN TPLH+A G + + E+L+
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
GA++ A+ + G T + +G++++ +IL
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA G TPL+ A+ G + I+++LL GA NA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 256 QTALNIAQKLGYIS 269
T L++A +G++
Sbjct: 81 FTPLHLAAFIGHLE 94
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 33/111 (29%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A H +V LL G + GFTPL +A GH + VLL+
Sbjct: 53 LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELL 109
H DV + F T I+ GN ++AE+L
Sbjct: 102 --------------------HGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL GA + + G TPLH+A+ G L +V L++NGA+VNAT N G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH A+ + I+++LL GA NA G+TA +I+
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L + GA++ A G TPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
TPLH+A+ L +V L+++GA+VNA G T + G + ++L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L A+VN TPLH+A G + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AA + H ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 84 DVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
DV +N ++ TPLH+AA G+ I E+L++ A+VN TPLH+A + +VE+
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L + G + G TPL +A GH +V VLL+N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN----------- 69
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKS--NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
DV + N+ TPLH+AA + I E+L++ A+VN Q
Sbjct: 70 --------------------GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 33/111 (29%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V LL G + G TPL +A H +V VLL+
Sbjct: 53 LAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELL 109
H DV + F T I+ GN ++AE+L
Sbjct: 102 --------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + ++ K G TPLH+A+ L +V L++NGA+VNA +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH + G + I+++LL GA NA G+TA +I+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A+ + GLTPLH AA + H ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
TPLH+ + +G L +V L+++GA+VNA G T + G
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + K +TPLH+A + +VE+L+ GA++ A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH A GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPLH+AA + I E+L++ A+VN TPLH+ +G + +VE+L+ GA++
Sbjct: 48 LTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 151 AKTRDGLTPLHCAARSGHDNVIDIL 175
A+ + G T + +G++++ +IL
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA +G TPLH A+ + I+++LL GA NA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 256 QTALNIAQKLGYIS 269
+T L++ G++
Sbjct: 81 ETPLHLVAMYGHLE 94
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + + G TPL +A H +V VLL+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN----------- 69
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
DV + TPLH+ A YG+ I E+L++ A+VN Q
Sbjct: 70 --------------------GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 33/111 (29%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA +H +V LL G + G TPL + GH +V VLL+
Sbjct: 53 LAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELL 109
H DV + F T I+ GN ++AE+L
Sbjct: 102 --------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
A R+G D+ + IL+ GA + + AG TPLH+A+ G L +V L+++GA+VNA+ + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH A+ G + I+++LL GA NA G+TA +I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G+TPLH AA+ GH ++++L++ GA + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
TPLH+A+ G L +V L+E GA+VNA G T + G
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
A G + +L+ A+VN +TPLH+A K G + +VE+L+ GA++ A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AA GH ++++L+E GA + ++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA + G TPLH A+++G + I+++LL GA NA+ + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 256 QTALNIAQKLGYI 268
+T L++A +G++
Sbjct: 81 RTPLHLAATVGHL 93
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
++ TPLH+AA G+ I E+L++ A+VN TPLH+A G + +VE+L+ G
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
A++ A+ + G T + +G++++ +IL
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
A + D VR L++ G + + G TPL +A ++GH +V VLL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV ++ + TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 69 -------------------HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
+AA+ H +V LL G + + G TPL +A GH +V VLLE
Sbjct: 53 LAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
A R+G D+ + IL+ GA + + AG TPLH+A+ G L +V L+++GA+VNA+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH A+ G + I+++LL GA NA G+TA +I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G+TPLH AA+ GH ++++L++ GA + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
TPLH+A+ G L +V L+E GA+VNA G T + G
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
A G + +L+ A+VN +TPLH+A K G + +VE+L+ GA++ A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AA GH ++++L+E GA + ++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA + G TPLH A+++G + I+++LL GA NA+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 256 QTALNIAQKLGYIS 269
+T L++A +G++
Sbjct: 81 RTPLHLAATVGHLE 94
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
++ TPLH+AA G+ I E+L++ A+VN TPLH+A G + +VE+L+ G
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
A++ A+ + G T + +G++++ +IL
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
A + D VR L++ G + + G TPL +A ++GH +V VLL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV ++ + TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 69 -------------------HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
+AA+ H +V LL G + + G TPL +A GH +V VLLE
Sbjct: 53 LAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + + + G TPLH+A+ + L +V L+++GA+VNA N G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH A+ G + I+++LL GA NA G+TA +I+
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A R G TPLH AA H ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
TPLH+A+ FG L +V L+++GA+VNA G T + G + ++L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + TPLH+A + + +VE+L+ GA++ A DG
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AA GH ++++L++ GA + ++ K G T I+ G ++ L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+AA Y + I E+L++ A+VN TPLH+A +G + +VE+L+ GA++ A
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108
Query: 152 KTRDGLTPLHCAARSGHDNVIDIL 175
+ + G T + +G++++ +IL
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA G TPLH A+ + I+++LL GA NA N G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 256 QTALNIAQKLGYIS 269
T L++A G++
Sbjct: 81 STPLHLAALFGHLE 94
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G + G TPL +A H +V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKS--NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + N TPLH+AA +G+ I E+L++ A+VN Q
Sbjct: 69 -------------------HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 33/111 (29%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA +H +V LL G + DG TPL +A GH +V VLL+
Sbjct: 53 LAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK----------- 101
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELL 109
H DV + F T I+ GN ++AE+L
Sbjct: 102 --------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 105 IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
+ +L + N + TPLH A + +V++VE L+ GA++ AK + GL PLH A
Sbjct: 26 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 85
Query: 165 RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT 224
GH V ++L++ GA + FTPLH A+ G+ + + L+++GA+ G T
Sbjct: 86 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145
Query: 225 PLHQASQQGRVLIIDLLLGAGA 246
PL + G I DLL G A
Sbjct: 146 PL-DLVKDGDTDIQDLLRGDAA 166
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
TPLH AA +V++ L++ GA +++K K G PLH A +G + LV++GA VN
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
+TPLH+A+ +G+ I LLL GA P G T L++ +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH AA Y ++ E L+Q A+V+ + K + PLH AC +G + ELL+ GA +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHI 195
TPLH AA G + +L++ GA K + G TPL +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 81 HSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
H DV K PLH A YG+ +AELL++ A VN TPLH A GK +
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+LL+ GA+ K RDG TPL + G ++ D+L
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLL 161
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
AA N VV YLL G + + G PL A GH V +L+++ G V
Sbjct: 50 FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAV---- 102
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+V FTPLH AA G I +LL+Q A+ +
Sbjct: 103 ----------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 121 KHNITPLHVACKWGKVAMVELL 142
+ TPL + K G + +LL
Sbjct: 141 RDGNTPLDLV-KDGDTDIQDLL 161
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 63/100 (63%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
A R+G D+ + IL+ GA + + AG TPLH+A+ G L +V L+++GA+VNA G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
TPLH A+ G + I+++LL GA NA G+TA +I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ A G+TPLH AA+ GH ++++L++ GA + ++ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
TPLH+A+ G L +V L+E GA+VNA G T + G
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
A G + +L+ A+VN +TPLH+A K G + +VE+L+ GA++ A+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AA GH ++++L+E GA + ++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA + G TPLH A+++G + I+++LL GA NA G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 256 QTALNIAQKLGYIS 269
+T L++A +G++
Sbjct: 81 RTPLHLAATVGHLE 94
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 55/89 (61%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
++ TPLH+AA G+ I E+L++ A+VN + TPLH+A G + +VE+L+ G
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
A++ A+ + G T + +G++++ +IL
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
A + D VR L++ G + + G TPL +A ++GH +V VLL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK------------ 68
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHF--TPLHIAAHYGNTNIAELLIQKHANVNNQ 119
H DV + + TPLH+AA G+ I E+L++ A+VN Q
Sbjct: 69 -------------------HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 120 AKHNITPLHVACKWGKVAMVELL 142
K T ++ G + E+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
+AA+ H +V LL G + G TPL +A GH +V VLLE
Sbjct: 53 LAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 97 AAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD 155
AA G+ + +L + N + TPLH A + +V++VE L+ GA++ AK +
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
GL PLH A GH V ++L++ GA + FTPLH A+ G+ + + L+++GA+
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
G TPL + G I DLL G A +A
Sbjct: 139 TKKNRDGNTPL-DLVKDGDTDIQDLLRGDAALLDA 172
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
TPLH AA +V++ L++ GA +++K K G PLH A +G + LV++GA VN
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
+TPLH+A+ +G+ I LLL GA P G T L++ +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH AA Y ++ E L+Q A+V+ + K + PLH AC +G + ELL+ GA +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHI 195
TPLH AA G + +L++ GA K + G TPL +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 81 HSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
H DV K PLH A YG+ +AELL++ A VN TPLH A GK +
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
+LL+ GA+ K RDG TPL + G ++ D+L A L + K
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAALLDAAKK 175
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
AA N VV YLL G + + G PL A GH V +L+++ G V
Sbjct: 52 FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAV---- 104
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+V FTPLH AA G I +LL+Q A+ +
Sbjct: 105 ----------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTR 154
+ TPL + K G + +LL A ++A +
Sbjct: 143 RDGNTPLDLV-KDGDTDIQDLLRGDAALLDAAKK 175
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 105 IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
+ +L + N + TPLH A + +V++VE L+ GA++ AK + GL PLH A
Sbjct: 24 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83
Query: 165 RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT 224
GH V ++L++ GA + FTPLH A+ G+ + + L+++GA+ G T
Sbjct: 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
Query: 225 PLHQASQQGRVLIIDLLLGAGA 246
PL + G I DLL G A
Sbjct: 144 PL-DLVKDGDTDIQDLLRGDAA 164
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
TPLH AA +V++ L++ GA +++K K G PLH A +G + LV++GA VN
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
+TPLH+A+ +G+ I LLL GA P G T L++ +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH AA Y ++ E L+Q A+V+ + K + PLH AC +G + ELL+ GA +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHI 195
TPLH AA G + +L++ GA K + G TPL +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 81 HSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
H DV K PLH A YG+ +AELL++ A VN TPLH A GK +
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+LL+ GA+ K RDG TPL + G ++ D+L
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLL 159
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
AA N VV YLL G + + G PL A GH V +L+++ G V
Sbjct: 48 FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAV---- 100
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
+V FTPLH AA G I +LL+Q A+ +
Sbjct: 101 ----------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 121 KHNITPLHVACKWGKVAMVELL 142
+ TPL + K G + +LL
Sbjct: 139 RDGNTPLDLV-KDGDTDIQDLL 159
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)
Query: 102 NTNIAELLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
+ ++ + L++ ANVN Q + TPLH A + + +VELL+ GA+ + ++G TP
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
AA +G ++ + + KGA + GFT A+ +G++ +++L + GANVN
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 221 L----------GYTPLHQASQQGRVLIIDLLLG-AGAQPNATTNHGQTAL 259
G T L A+++G V ++ +LL GA NA N G+ AL
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
+TPLH A +I ELL++ A+ + K+ TP +A G V +++L +SKGA++
Sbjct: 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA--ALYSKT--------KAGFTPLHIASHFG 200
G T AA G + L ++GA L KT K G T L A+ G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Query: 201 QLNMVRYLV-ENGANVNATTNLGYTPLHQA---SQQGRV-LIIDLLLGAGAQPNATTNHG 255
+ +++ L+ E GA+VNA N+G L A S V I LLL GA N G
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Query: 256 QTALNIA 262
+T L +A
Sbjct: 220 KTPLILA 226
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 47/283 (16%)
Query: 1 MAAQENHD-GVVRYLLSKGGNQTLATEDG-FTPLAVAMQQGHDRVVAVLLENDTKGKVKL 58
+ A +N D +V+ LL G N E+G +TPL A+Q + +V +LL +
Sbjct: 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------ 63
Query: 59 PALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
P ++ + TP +AA G+ + +L + K A+VN
Sbjct: 64 -----------------------DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANI--EAKTRD--------GLTPLHCAARSGH 168
+ T A +GKV ++ L +GAN+ KT++ G T L AA GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160
Query: 169 DNVIDILI-EKGAALYSKTKAGFTPL---HIASHFGQLNMVRY-LVENGANVNATTNLGY 223
V+ IL+ E GA + + G L ++S + + + L+++GA+VN G
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 224 TPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
TPL A ++ + L+ LL + N T + G+TAL +A +L
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 170 NVIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
+++ L+E GA + + + + G+TPLH A + ++V L+ +GA+ G TP
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL 78
Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
A+ G V ++ L L GA N +G TA A G +
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 24/163 (14%)
Query: 11 VRYLLSKGGNQTL---ATED-------GFTPLAVAMQQGHDRVVAVLLEN--------DT 52
+++L +G N L ED G T L A ++GH V+ +LL+ D
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 53 KGKVKLPALH-IXXXXXXXXXXXXXXENDHSPDV--KSNSHFTPLHIAAHYGNTNIAE-L 108
G+ L +H + DH DV + TPL +A + + + L
Sbjct: 181 MGRNAL--IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
L Q+H +N+ T L +A + + ELL +GA+ +
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)
Query: 102 NTNIAELLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
+ ++ + L++ ANVN Q + TPLH A + + +VELL+ GA+ + ++G TP
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
AA +G ++ + + KGA + GFT A+ +G++ +++L + GANVN
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 221 L----------GYTPLHQASQQGRVLIIDLLLGA-GAQPNATTNHGQTAL 259
G T L A+++G V ++ +LL GA NA N G+ AL
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
+TPLH A +I ELL++ A+ + K+ TP +A G V +++L +SKGA++
Sbjct: 60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN 119
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA--ALYSKT--------KAGFTPLHIASHFG 200
G T AA G + L ++GA L KT K G T L A+ G
Sbjct: 120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179
Query: 201 QLNMVRYLV-ENGANVNATTNLGYTPLHQA---SQQGRV-LIIDLLLGAGAQPNATTNHG 255
+ +++ L+ E GA+VNA N+G L A S V I LLL GA N G
Sbjct: 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 239
Query: 256 QTALNIA 262
+T L +A
Sbjct: 240 KTPLILA 246
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 47/283 (16%)
Query: 1 MAAQENHD-GVVRYLLSKGGNQTLATEDG-FTPLAVAMQQGHDRVVAVLLENDTKGKVKL 58
+ A +N D +V+ LL G N E+G +TPL A+Q + +V +LL +
Sbjct: 30 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------ 83
Query: 59 PALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
P ++ + TP +AA G+ + +L + K A+VN
Sbjct: 84 -----------------------DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE 120
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANI--EAKTRD--------GLTPLHCAARSGH 168
+ T A +GKV ++ L +GAN+ KT++ G T L AA GH
Sbjct: 121 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 180
Query: 169 DNVIDILI-EKGAALYSKTKAGFTPL---HIASHFGQLNMVRY-LVENGANVNATTNLGY 223
V+ IL+ E GA + + G L ++S + + + L+++GA+VN G
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 224 TPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
TPL A ++ + L+ LL + N T + G+TAL +A +L
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 283
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 170 NVIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
+++ L+E GA + + + + G+TPLH A + ++V L+ +GA+ G TP
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98
Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
A+ G V ++ L L GA N +G TA A G +
Sbjct: 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 31/193 (16%)
Query: 11 VRYLLSKGGNQTL---ATED-------GFTPLAVAMQQGHDRVVAVLLEN--------DT 52
+++L +G N L ED G T L A ++GH V+ +LL+ D
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 53 KGKVKLPALH-IXXXXXXXXXXXXXXENDHSPDV--KSNSHFTPLHIAAHYGNTNIAE-L 108
G+ L +H + DH DV + TPL +A + + + L
Sbjct: 201 MGRNAL--IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 258
Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168
L Q+H +N+ T L +A + + ELL +GA+ + L AR +
Sbjct: 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC------GDLVMTARRNY 312
Query: 169 D-NVIDILIEKGA 180
D +++ +L+ GA
Sbjct: 313 DHSLVKVLLSHGA 325
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRD--GLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
A + G+ V +L++ GA T D G +PLH AA+ GH + ++L+ G + ++TK
Sbjct: 9 AARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
TPLH+A+ G N+V L+++GA+VNA L T LH A++ +++LL+ GA
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Query: 248 PNATTNHGQTALNIA 262
+ + +TA +I+
Sbjct: 126 VHTQSKFCKTAFDIS 140
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
+PLH+AA YG+ + E+L++ + + + K + TPLH+A G +VE+L+ GA++ A
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
K +T LH A H V+++LI+ GA +++++K T I+ G ++ L
Sbjct: 96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 59/102 (57%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
+PLH+A ++G + E+L+ G + +A+T+ TPLH AA GH N++++L++ GA + +
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
K T LH A+ +V L++ GA+V+ + T
Sbjct: 96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA+ D VR L++ G T G +PL +A Q GH VLL
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV--------- 58
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
S D ++ TPLH+AA G+ NI E+L++ A+VN +
Sbjct: 59 --------------------SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM 98
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+T LH A + +VELLI GA++ +++ T + +G++++ +IL
Sbjct: 99 LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 33/144 (22%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AAQ H LL G ++ T+ TPL +A +GH +V VLL+
Sbjct: 40 LAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK----------- 88
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
H DV K T LH A + + + ELLI+ A+V+
Sbjct: 89 --------------------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 119 QAKHNITPLHVACKWGKVAMVELL 142
Q+K T ++ G + E+L
Sbjct: 129 QSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 77/150 (51%)
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
N + +N TPL VAC G ++ L+ +E K +G T L A ++ + + L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
KG+ + +K +G TPL + FG M +L+E+GANVN G TPL AS+ GR
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
I+ LL GA +A G TA A+ G
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFG 178
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
D + + + + TPL +A G N + L++ + ++ T L A K ++ +
Sbjct: 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIA 84
Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF 199
E L+SKG+N+ K G TPL + G+ + L+E GA + + G TPL +AS +
Sbjct: 85 EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
G+ +V+ L+E GA+++A G T A GR +I +
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
T L A IAE L+ K +NVN + TPL + +G M L+ GAN+
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+ +G TPL A++ G ++ L+E GA + ++ G T A FG+ +++ E
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
TPL +A G N + LVEN + G T L A + R+ I + LL G+ N
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 251 TTNHGQTALNIAQKLGY 267
G+T L + GY
Sbjct: 97 KDFSGKTPLMWSIIFGY 113
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 29/141 (20%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
A + N G+ LLSKG N G TPL ++ G+ + LLE+
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-------- 126
Query: 62 HIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
ND + + + TPL +A+ YG + I + L++ A+++ +
Sbjct: 127 ----------------VNDRNLEGE-----TPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 122 HNITPLHVACKWGKVAMVELL 142
+T A +G+ ++++
Sbjct: 166 TGLTAEASARIFGRQEVIKIF 186
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
T LH+AA Y ++ A+ L++ A+ N Q TPLH A + ++LI ++ +++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPL AAR + +++ LI A + + G + LH A+ ++ L++
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
NGAN + N TPL A+++G +LL A + T + + +IAQ+
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 85 VKSNSHFTPLHIAA------HYGNTN--------IAELLIQKHANVNNQAKHNITPLHVA 130
V+ FTPL IA+ GN+ I++ + Q + N + T LH+A
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64
Query: 131 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAG 189
++ + + L+ A+ + G TPLH A + V ILI A L ++ G
Sbjct: 65 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPL +A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 250 ATTNHGQTALNIAQKLG 266
N +T L +A + G
Sbjct: 185 MQNNREETPLFLAAREG 201
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD- 155
A YG L++ +V K N+T LH A ++ +V+ ISKGA ++ D
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
TPLH A R GH +++ L++ GA G + +H+A+ FG ++V YL+ G +V
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 216 ------------------------------NATTNLG-----YTPLHQASQQGRVLIIDL 240
N + NLG T LH A G +I L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 241 LLGAGAQPNATTNHGQTALNIAQK 264
LL AGA +A G++AL++A++
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQ 219
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH A G+ ++ L++ A+ + + +H+A ++G ++V LI+KG +++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 152 KTRDGLTPLHCAARSGHD-NVIDILIEKGAAL-----YSKTKAGFTPLHIASHFGQLNMV 205
++G+TPL AA H + +L+ ++ Y K T LH A G ++
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN----TALHWAVLAGNTTVI 193
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
L+E GANV+A G + L A Q+ V +I+ L
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT-NLGYTPLHQASQQG 233
L+E G + K T LH A+ ++++V+Y + GA V+ +L TPLH A++QG
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
+ ++ L+ GA P+ G + +++A + G+ S
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 36/215 (16%)
Query: 1 MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
AA N +V+Y +SKG L + TPL A +QGH +V L++
Sbjct: 48 WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA------- 100
Query: 60 ALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
P + + +H+AA +G+T+I LI K +V+
Sbjct: 101 ----------------------DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 120 AKHNITPL-HVACKWGKVAMVELLISKGANIEAKTRDGL---TPLHCAARSGHDNVIDIL 175
++ +TPL A + V LL++ N+ D T LH A +G+ VI +L
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLT--FNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+E GA + ++ G + L +A + M+ +L E
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
T LH+AA Y ++ A+ L++ A+ N Q TPLH A + ++LI ++ +++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPL AAR + +++ LI A + + G + LH A+ ++ L++
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
NGAN + N TPL A+++G +LL A + T + + +IAQ+
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 109 LIQKHANVNNQA-KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
I + A+++NQ + T LH+A ++ + + L+ A+ + G TPLH A +
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69
Query: 168 HDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
V ILI A L ++ G TPL +A+ M+ L+ + A+VNA +LG + L
Sbjct: 70 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
H A+ V +LL GA + N +T L +A + G
Sbjct: 130 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 171 VIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH-- 227
VI I +GA+L+++T + G T LH+A+ + + + + L+E A+ N N+G TPLH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 228 -QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
A QG I L+ +A + G T L +A +L
Sbjct: 66 VSADAQGVFQI--LIRNRATDLDARMHDGTTPLILAARLA 103
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
T LH+AA Y ++ A+ L++ A+ N Q TPLH A + ++LI ++ +++
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPL AAR + +++ LI A + + G + LH A+ ++ L++
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
NGAN + N TPL A+++G +LL A + T + + +IAQ+
Sbjct: 180 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 233
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 85 VKSNSHFTPLHIAA------HYGNTN--------IAELLIQKHANVNNQAKHNITPLHVA 130
V+ FTPL IA+ GN+ I++ + Q + N + T LH+A
Sbjct: 6 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 65
Query: 131 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAG 189
++ + + L+ A+ + G TPLH A + V ILI A L ++ G
Sbjct: 66 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 125
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPL +A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA +
Sbjct: 126 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 185
Query: 250 ATTNHGQTALNIAQKLG 266
N +T L +A + G
Sbjct: 186 MQNNREETPLFLAAREG 202
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 146 GANIEAKTRDGLTPLHCAARSG-------------HDNVIDILIEKGAALYSKT-KAGFT 191
G ++ + DG TPL A+ SG VI I +GA+L+++T + G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 192 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH---QASQQGRVLIIDLLLGAGAQP 248
LH+A+ + + + + L+E A+ N N+G TPLH A QG I L+
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI--LIRNRATDL 118
Query: 249 NATTNHGQTALNIAQKL 265
+A + G T L +A +L
Sbjct: 119 DARMHDGTTPLILAARL 135
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
S ++P+H AA +G+ LI + VN +++PLH AC G ++ V++L+ GA
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ T D TPL A SG + +++L++ GA++ ++ +P+H A+ G + V L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 176
Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+ G N++ + TPL+ A + + + LL +GA N
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKV 56
AA H +R L+S+G + T D +PL A GH V +LL+ N
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 57 KLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHF-TPLHIAAHYGNTNIAELLIQKHAN 115
P + H V+ S +P+H AA G+ LI N
Sbjct: 126 HTPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVIDI 174
++++ H TPL++AC+ + A V+ L+ GA++ + K +D +PLH R+ + + +
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD--SPLHAVVRTASEELACL 240
Query: 175 LIEKGAALYSKTKAGFTPLHIA---SHFGQLNMVR 206
L++ GA +K G P+ + S QL + R
Sbjct: 241 LMDFGADTQAKNAEGKRPVELVPPESPLAQLFLER 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
++P+H A+ G +R L+ G VN T +PLH+A G + + +LL GAQ N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 250 ATTNHGQTAL 259
T T L
Sbjct: 120 GVTADWHTPL 129
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
S ++P+H AA +G+ LI + VN +++PLH AC G ++ V++L+ GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ T D TPL A SG + +++L++ GA++ ++ +P+H A+ G + V L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 120
Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
+ G N++ + TPL+ A + + + LL +GA N
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 15/215 (6%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKV 56
AA H +R L+S+G + T D +PL A GH V +LL+ N
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 57 KLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHF-TPLHIAAHYGNTNIAELLIQKHAN 115
P + H V+ S +P+H AA G+ LI N
Sbjct: 70 HTPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVIDI 174
++++ H TPL++AC+ + A V+ L+ GA++ + K +D +PLH AR+ + + +
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD--SPLHAVARTASEELACL 184
Query: 175 LIEKGAALYSKTKAGFTPLHIA---SHFGQLNMVR 206
L++ GA +K G P+ + S QL + R
Sbjct: 185 LMDFGADTQAKNAEGKRPVELVPPESPLAQLFLER 219
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
++P+H A+ G +R L+ G VN T +PLH+A G + + +LL GAQ N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 250 ATTNHGQTAL 259
T T L
Sbjct: 64 GVTADWHTPL 73
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
T LH+AA Y ++ A+ L++ A+ N Q TPLH A + ++LI ++ +++
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPL AAR + +++ LI A + + G + LH A+ ++ L++
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
NGAN + N TPL A+++G +LL A + T + + +IAQ+
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 85 VKSNSHFTPLHIAA------HYGNTN--------IAELLIQKHANVNNQAKHNITPLHVA 130
V+ FTPL IA+ GN+ I++ + Q + N + T LH+A
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLA 64
Query: 131 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAG 189
+ + + L+ A+ + G TPLH A + V ILI A L ++ G
Sbjct: 65 AAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
TPL +A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 250 ATTNHGQTALNIAQKLG 266
N +T L +A + G
Sbjct: 185 MQNNREETPLFLAAREG 201
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 1/174 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
T LH+AA Y ++ A+ L++ A+ Q TPLH A + ++L+ ++ +++
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPL AAR + +++ LI A + + G + LH A+ ++ L++
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 143
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
NGAN + N TPL A+++G +LL A + T + + +IAQ+
Sbjct: 144 NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 109 LIQKHANVNNQA-KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
I + A+++NQ + T LH+A ++ + + L+ A+ + G TPLH A +
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSAD 66
Query: 168 HDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
V IL+ A L ++ G TPL +A+ M+ L+ + A+VNA +LG + L
Sbjct: 67 AQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSAL 126
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
H A+ V +LL GA + N +T L +A + G
Sbjct: 127 HWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG 166
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 170 NVIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH- 227
+VI I +GA+L+++T + G T LH+A+ + + + + L+E A+ N+G TPLH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 228 --QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
A QG I LL +A + G T L +A +L
Sbjct: 62 AVSADAQGVFQI--LLRNRATDLDARMHDGTTPLILAARLA 100
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
A SG + L+E+GA + G T LH A ++MV++LVENGAN+N N G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
+ PLH A+ G + I + L+ GA A + G T L+I
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 101/248 (40%), Gaps = 56/248 (22%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXX 70
V LL +G + A DG T L A + +V L+EN
Sbjct: 56 VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA------------------ 97
Query: 71 XXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA 130
N + PD N + PLH AA G +IAE LI + A+V TPL +A
Sbjct: 98 --------NINQPD---NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146
Query: 131 CKWGKVAMVELLISK-GANIEAKTRD--------------------------GLTPLHCA 163
+ +++ +++ G +IEA ++ G T LH A
Sbjct: 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206
Query: 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 223
A G+ V+ +LI+ + K G+TPLH A+H+G+ R LVEN ++ A +G
Sbjct: 207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 224 TPLHQASQ 231
T A +
Sbjct: 267 TAFDVADE 274
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
AC G V L+ +GA+I DGLT LH A + +++ L+E GA + G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
+ PLH A+ G L++ YL+ GA+V A + G TPL
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 62/235 (26%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
A G+T L+++ A++N +T LH AC V MV+ L+ GANI +G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS------------------- 197
PLH AA G+ ++ + LI +GA + + G TPL IA
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 198 -------------------HFGQLNMVRY----------------------LVENGANVN 216
+ G +N VR+ L++ +VN
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK--LGYIS 269
G+TPLH A+ G+ +L+ A GQTA ++A + LGY+
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDT-KGKVKLPALHIXXXXX 68
+ YL+S+G + +G TPL +A ++ + LL+N+ + V + A
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEE----AMEELLQNEVNRQGVDIEAARKEEERI 176
Query: 69 XXXXXXXXXENDHSPDVK-SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPL 127
+ H DV+ + S T LH+AA G T + +LLIQ +VN + TPL
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
Query: 128 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
H A WGK +L+ ++EA + G T A
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
+AA + + V++ L+ + + DG+TPL A G + +L+EN
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ ++N TPLH+A IAE L+ + + TPLH+AC+ G +A V +L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 144 SKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIA 196
++A +G T LH A+ G+ ++++L+ GA + ++ G T LH+A
Sbjct: 99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTP 225
++V L++ GA+VN T GY+P
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
A +N Q TPLH+A + + E L+ G + E + G TPLH A G +
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 174 ILIEKGAA--LYSKTKA----GFTPLHIASHFGQLNMVRYLVENGANVNATTNL-GYTPL 226
+L + L+S KA G T LH+AS G L +V LV GA+VNA G T L
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATT---------NHGQTALNIAQKLGYIS 269
H A ++ LLL GA N T G+ + I Q+LG ++
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A N + LL G + L G TPL +A +QG V VL ++ T P
Sbjct: 51 LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-----PH 105
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH N H T LH+A+ +G I ELL+ A+VN Q
Sbjct: 106 LHSILKA-----------------TNYNGH-TCLHLASIHGYLGIVELLVSLGADVNAQE 147
Query: 121 KHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
N T LH+A +V LL+ GA++ T G +P
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
+ ++R + + A +N NL TPLH A + I + LLGAG P G T L++
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 262 AQKLGYIS 269
A + G ++
Sbjct: 85 ACEQGCLA 92
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+VNA GYTPLH A+++G + I+++LL AGA NA G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 256 QTALNIA 262
+TA +I+
Sbjct: 69 KTAFDIS 75
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K K G+TPLH+A+ G L +V L++ GA+VNA G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 223 YTPLHQASQQGRVLIIDLL 241
T + G + ++L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + ++ K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 190 FTPLHIASHFGQLNMVRYL 208
T I+ G ++ L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+VN + K TPLH+A + G + +VE+L+ GA++ A+ + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 157 LTPLHCAARSGHDNVIDIL 175
T + +G++++ +IL
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
K +TPLH+AA G+ I E+L++ A+VN Q K T ++ G + E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
AA+ D VR L++ G + +DG+TPL +A ++GH +V VLL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ ++N TPLH+A IAE L+ + + TPLH+AC+ G +A V +L
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 144 SKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIA 196
++A +G T LH A+ G+ ++++L+ GA + ++ G T LH+A
Sbjct: 96 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 155
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTP 225
++V L++ GA+VN T GY+P
Sbjct: 156 VDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
A +N Q TPLH+A + + E L+ G + E + G TPLH A G +
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 174 ILIEKGAA--LYSKTKA----GFTPLHIASHFGQLNMVRYLVENGANVNATTNL-GYTPL 226
+L + L+S KA G T LH+AS G L +V LV GA+VNA G T L
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 152
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATT---------NHGQTALNIAQKLGYIS 269
H A ++ LLL GA N T G+ + I Q+LG ++
Sbjct: 153 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 204
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A N + LL G + L G TPL +A +QG V VL ++ T P
Sbjct: 48 LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-----PH 102
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH N H T LH+A+ +G I ELL+ A+VN Q
Sbjct: 103 LHSILKA-----------------TNYNGH-TCLHLASIHGYLGIVELLVSLGADVNAQE 144
Query: 121 KHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
N T LH+A +V LL+ GA++ T G +P
Sbjct: 145 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
+ ++R + + A +N NL TPLH A + I + LLGAG P G T L++
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
Query: 262 AQKLGYIS 269
A + G ++
Sbjct: 82 ACEQGCLA 89
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 93 PLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI-- 149
PLH A + ELL K + + + + PLH + + + L+SK N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 150 -EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNMVR 206
+ G TP H A G+ V+ L ++ L T G T LH+A + +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-NATTNHGQTAL 259
+L+ENGA+V PLH+A+ G + +I+LL G G N G T L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 45 AVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTN 104
++LL+ D G++ L EN + D +S +TP HIA GN
Sbjct: 27 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 105 IAELLIQK--HANVNNQAKHNITPLHVAC--KWGKVAMVELLISKGANIEAKTRDGLTPL 160
+ + L + ++N +T LH+A KW +V+ + LI GA++ K + PL
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPL 144
Query: 161 HCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNAT 218
H AA G +I++L G +A+ + K G+TPL A G + LVE GA +
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 219 TNLG 222
N G
Sbjct: 205 DNKG 208
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
G T LH A+ G ++ L++ G+ K AG+TPLH A + G L +V L+++ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
N T +PLH A++ G V I+ LLL GA NA G
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%)
Query: 61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LHI +N P+VK ++ +TPLH A ++G+ + ELL+Q A VN
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
N +PLH A K G V +V+LL+S GA+ A GL P+
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T LH+A G + VE L+ G++ K G TPLH A GH V+++L++ A + +
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
+PLH A+ G +++V+ L+ GA+ NA G P+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
T LHIA+ G+ E L+Q ++ N + TPLH AC G + +VELL+ A +
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
+PLH AA++GH +++ +L+ GA+ + G P+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T LHIAS G + V YL++NG++ N + G+TPLH+A G + +++LLL A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 249 NATTNHGQTALNIAQKLGYI 268
N T + L+ A K G++
Sbjct: 70 NTTGYQNDSPLHDAAKNGHV 89
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
V YLL G + + G+TPL A GH +VV +LL+
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 45 AVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTN 104
++LL+ D G++ L EN + D +S +TP HIA GN
Sbjct: 27 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 105 IAELLIQK--HANVNNQAKHNITPLHVAC--KWGKVAMVELLISKGANIEAKTRDGLTPL 160
+ + L + ++N +T LH+A KW +V+ + LI GA++ K + PL
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPL 144
Query: 161 HCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNAT 218
H AA G +I++L G +A+ + K G+TPL A G + LVE GA +
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 219 TNLG 222
N G
Sbjct: 205 DNKG 208
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 93 PLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI-- 149
PLH A + ELL K + + + + PLH + + + L+SK N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 150 -EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNMVR 206
+ G TP H A G+ V+ L ++ L T G T LH+A + +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-NATTNHGQTAL 259
+L+ENGA+V PLH+A+ G + +I+LL G G N G T L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 93 PLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI-- 149
PLH A + ELL K + + + + PLH + + + L+SK N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 150 -EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNMVR 206
+ G TP H A G+ V+ L ++ L T G T LH+A + +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-NATTNHGQTAL 259
+L+ENGA+V PLH+A+ G + +I+LL G G N G T L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 45 AVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTN 104
++LL+ D G++ L EN + D +S +TP HIA GN
Sbjct: 27 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 105 IAELLIQK--HANVNNQAKHNITPLHVAC--KWGKVAMVELLISKGANIEAKTRDGLTPL 160
+ + L + ++N +T LH+A KW +V+ + LI GA++ K + PL
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPL 144
Query: 161 HCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNAT 218
H AA G +I++L G +A+ + K G+TPL A G + LVE GA +
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 219 TNLG 222
N G
Sbjct: 205 DNKG 208
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLIS 144
+ N+ TPLH A + ++L++ A N+N + TPL +A + MVE LI+
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 145 KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204
A+I A G T LH AA + ++IL+ A ++ TPL +A+ G
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEA 199
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
+ L++N AN T ++ P AS++ I+ LL
Sbjct: 200 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
T LH+AA + + A+ L+ A+ N+Q TPLH A + + ++L+ ++ N+
Sbjct: 53 TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 112
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPL AAR + +++ LI A + + +G T LH A+ V L+
Sbjct: 113 ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
Query: 211 NGANVNATTNLGYTPLHQASQQG 233
+ AN +A + TPL A+++G
Sbjct: 173 HHANRDAQDDKDETPLFLAAREG 195
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Query: 105 IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
I++LL Q K T LH+A ++ + + L+ GA+ ++ G TPLH A
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 165 RSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 223
+ V IL+ A L ++ G TPL +A+ MV L+ A++NA N G
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 152
Query: 224 TPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
T LH A+ +++LL A +A + +T L +A + G
Sbjct: 153 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 195
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 156 GLTPLHCAA------RSGHD---------NVIDILIEKGAAL-YSKTKAGFTPLHIASHF 199
GLTPL AA +G D VI L+ +GA L + K G T LH+A+ F
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL-GAGAQPNATTNHGQTA 258
+ + + L++ GA+ N+ N G TPLH A + + +LL NA + G T
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 259 LNIAQKLG 266
L +A +L
Sbjct: 122 LILAARLA 129
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%)
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
D + NS T LH AA NT +L+ HAN + Q + TPL +A + G
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEAS 200
Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
+ L+ AN E P A+ H +++ +L E
Sbjct: 201 KALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
FTPL A+ +G L++ A+ + AK + L +A G +V LL+ + +I
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+G TPL A R H ++ L+ +GA L ++ +G+TP+ +A G V+ ++E
Sbjct: 97 IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIE 155
Query: 211 N 211
N
Sbjct: 156 N 156
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 143 ISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
+ KG N+ K + G TPL A+ G + L+E GA + K + L +AS G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
++V L+E ++N G TPL A + V ++ LL GA + G T +++
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 262 AQKLGY 267
A LGY
Sbjct: 142 AVALGY 147
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGAN--IEAKTRDGLTPLHCAARSGHDNVID 173
VN + TPL A +G++ V L+ GA+ I AK R+ + L A+ G+ +++
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE--SALSLASTGGYTDIVG 86
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
+L+E+ + G TPL A + V L+ GA++ + GYTP+ A G
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 31/172 (18%)
Query: 1 MAAQENHDGVVRYLLSKGGNQT-LATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
+AAQ D + +L KG N E GFTPL A G V LLE
Sbjct: 9 LAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA------- 60
Query: 60 ALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
P + + + L +A+ G T+I LL+++ ++N
Sbjct: 61 ----------------------DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
+ TPL A + V VE L+++GA++ + G TP+ A G+ V
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVL 47
A + NH V LL++G + T + G+TP+ +A+ G+ +V V+
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 42/69 (60%)
Query: 93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
PLH AA G I E L+ K A++N KH+ITPL A G V+ V+LL+SKGA+ K
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 153 TRDGLTPLH 161
DGLT L
Sbjct: 98 GPDGLTALE 106
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
A ++G + + + KG + + G PLH A+ GQL ++ +L+ GA++NA
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
TPL A +G V + LLL GA G TAL
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 101 GNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
G+ + + + K +VN + PLH A G++ ++E L+ KGA+I A + +TPL
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLH 194
A GH + + +L+ KGA K G T L
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A K G + V+ ++KG ++ G PLH AA G +++ L+ KGA + + K
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
TPL A + G ++ V+ L+ GA+ G T L Q
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ 111
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
G L+ V+ V G +VN T G PLH A+ G++ I++ LL GA NA H T L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 260 NIAQKLGYIS 269
A G++S
Sbjct: 73 LSAVYEGHVS 82
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQ 38
A E H V+ LLSKG ++T+ DG T L Q
Sbjct: 75 AVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ 111
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
++ +LL KG + + TPL A+ +GH V +LL VK P
Sbjct: 50 ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 99
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+G TPL AA G V++ L++ GA K + L +A G ++V+ L++ G
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
+VN G TPL A V + +LL +GA P T+ G ++++A LGY S
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
FTPL AA +G + E L+Q A+ K + L +AC G +V++L+ G ++
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG 200
+G TPL A H + +L+E GA +T +G+ + +A G
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
I++ +N+ + TPL A G++A+VE L+ GA+ + + + L A G+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 170 NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 229
+++ +L++ G + G TPL A H + V+ L+E+GA+ T+ GY + A
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 230 SQQG 233
G
Sbjct: 143 VALG 146
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDV 85
E+GFTPL A G VV LL+N P +
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGA-----------------------------DPQL 64
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
+ L +A G T+I ++L+ +VN + TPL A V V++L+
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
GA+ +T G + A G+ +V ++
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVI 154
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
+G+ +A L+++ A+ N Q +P+H A + G + +++L+ GA++ A G P
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+H A R GH +V+ L + + L+ + +G TPL +A G N++ L
Sbjct: 113 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + + G P
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+H+A G ++V +L ++++ G TPL A Q+G ++D+L G
Sbjct: 113 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 162
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
SP+V+ S +P+H AA G + ++L++ A+VN P+H+A + G ++V
Sbjct: 68 SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF 127
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
L + +++ + GLTPL A + G N++DIL
Sbjct: 128 LAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
L+++GA+ + +G +P+H A+ G L+ ++ LVE+GA+VNA + G P+H A ++G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 235 VLIIDLLLGAGAQPNATTNH----GQTALNIAQKLG 266
++ L P + +H G T L +A++ G
Sbjct: 122 SSVVSFL-----APESDLHHRDASGLTPLELARQRG 152
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
FG + L++ GA+ N G +P+H A++ G + + +L+ GA NA + G
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 259 LNIAQKLGYIS 269
+++A + G+ S
Sbjct: 113 IHLAIREGHSS 123
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+G TPL AA G V++ L++ GA K + L +A G ++V+ L++ G
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
+VN G TPL A V + +LL +GA P T+ G ++++A LGY S
Sbjct: 110 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 165
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
FTPL AA +G + E L+Q A+ K + L +AC G +V++L+ G ++
Sbjct: 53 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 112
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG 200
+G TPL A H + +L+E GA +T +G+ + +A G
Sbjct: 113 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
I++ +N+ + TPL A G++A+VE L+ GA+ + + + L A G+
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 170 NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 229
+++ +L++ G + G TPL A H + V+ L+E+GA+ T+ GY + A
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Query: 230 SQQG 233
G
Sbjct: 159 VALG 162
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDV 85
E+GFTPL A G VV LL+N P +
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGA-----------------------------DPQL 80
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
+ L +A G T+I ++L+ +VN + TPL A V V++L+
Sbjct: 81 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
GA+ +T G + A G+ +V ++
Sbjct: 141 GADPTIETDSGYNSMDLAVALGYRSVQQVI 170
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+G TPL AA G V++ L++ GA K + L +A G ++V+ L++ G
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
+VN G TPL A V + +LL +GA P T+ G ++++A LGY S
Sbjct: 92 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 147
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
FTPL AA +G + E L+Q A+ K + L +AC G +V++L+ G ++
Sbjct: 35 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 94
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG 200
+G TPL A H + +L+E GA +T +G+ + +A G
Sbjct: 95 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
I++ +N+ + TPL A G++A+VE L+ GA+ + + + L A G+
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 170 NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 229
+++ +L++ G + G TPL A H + V+ L+E+GA+ T+ GY + A
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 230 SQQG 233
G
Sbjct: 141 VALG 144
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDV 85
E+GFTPL A G VV LL+N P +
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGA-----------------------------DPQL 62
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
+ L +A G T+I ++L+ +VN + TPL A V V++L+
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
GA+ +T G + A G+ +V ++
Sbjct: 123 GADPTIETDSGYNSMDLAVALGYRSVQQVI 152
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
PLH AA G I E L+ K A++N KH+ITPL A G V+ V+LL+SKGA+ K
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 153 TRDGLT 158
DGLT
Sbjct: 103 GPDGLT 108
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
A ++G + + + KG + + G PLH A+ GQL ++ +L+ GA++NA
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
TPL A +G V + LLL GA G TA
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 101 GNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160
G+ + + + K +VN + PLH A G++ ++E L+ KGA+I A + +TPL
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFT 191
A GH + + +L+ KGA K G T
Sbjct: 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A K G + V+ ++KG ++ G PLH AA G +++ L+ KGA + + K
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
TPL A + G ++ V+ L+ GA+ G T Q
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
G L+ V+ V G +VN T G PLH A+ G++ I++ LL GA NA H T L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 260 NIAQKLGYIS 269
A G++S
Sbjct: 78 LSAVYEGHVS 87
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
A E H V+ LLSKG ++T+ DG T A + ++ + LL+
Sbjct: 80 AVYEGHVSCVKLLLSKGADKTVKGPDGLT----AFEATDNQAIKALLQ 123
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
++ +LL KG + + TPL A+ +GH V +LL VK P
Sbjct: 55 ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
+G+ +A L+++ A+ N Q +P+H A + G + +++L+ GA++ A G P
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+H A R GH +V+ L + + L+ + +G TPL +A G N++ L
Sbjct: 111 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + + G P
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+H+A G ++V +L ++++ G TPL A Q+G ++D+L G
Sbjct: 111 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 160
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
SP+V+ S +P+H AA G + ++L++ A+VN P+H+A + G ++V
Sbjct: 66 SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF 125
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
L + +++ + GLTPL A + G N++DIL
Sbjct: 126 LAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
L+++GA+ + +G +P+H A+ G L+ ++ LVE+GA+VNA + G P+H A ++G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 235 VLIIDLLLGAGAQPNATTNH----GQTALNIAQKLG 266
++ L P + +H G T L +A++ G
Sbjct: 120 SSVVSFL-----APESDLHHRDASGLTPLELARQRG 150
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
FG + L++ GA+ N G +P+H A++ G + + +L+ GA NA + G
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 259 LNIAQKLGYIS 269
+++A + G+ S
Sbjct: 111 IHLAIREGHSS 121
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K K G TPLH+A+ G L +V+ L+E GA+VNA G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 223 YTPLHQASQQGRVLIIDLL 241
T + G + ++L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + ++ K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 190 FTPLHIASHFGQLNMVRYL 208
T I+ G ++ L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+V A G TPLH A++ G + ++ LLL AGA NA G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 256 QTALNIA 262
+TA +I+
Sbjct: 73 KTAFDIS 79
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+V + K+ TPLH+A + G + +V+LL+ GA++ A+ + G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 157 LTPLHCAARSGHDNVIDIL 175
T + +G++++ +IL
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
K + TPLH+AA G+ + +LL++ A+VN Q K T ++ G + E+L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
AA+ D VR L++ G + ++G TPL +A + GH VV +LLE
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
FTPL A+ +G L++ A+ + AK + L +A G +V LL+ + +I
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+G TPL A H ++ L+ +GA L ++ +G+TP+ +A G V+ ++E
Sbjct: 97 IYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIE 155
Query: 211 N 211
N
Sbjct: 156 N 156
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGAN--IEAKTRDGLTPLHCAARSGHDNVID 173
VN + TPL A +G++ V L+ GA+ I AK R+ + L A+ G+ +++
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE--SALSLASTGGYTDIVG 86
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
+L+E+ + G TPL A H + V L+ GA++ + GYTP+ A G
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 143 ISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
+ KG N+ K + G TPL A+ G + L+E GA + K + L +AS G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
++V L+E ++N G TPL A V ++ LL GA + G T +++
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 262 AQKLGY 267
A LGY
Sbjct: 142 AVALGY 147
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 31/172 (18%)
Query: 1 MAAQENHDGVVRYLLSKGGNQT-LATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
+AAQ D + +L KG N E GFTPL A G V LLE
Sbjct: 9 LAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA------- 60
Query: 60 ALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
P + + + L +A+ G T+I LL+++ ++N
Sbjct: 61 ----------------------DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
+ TPL A V VE L+++GA++ + G TP+ A G+ V
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVENGANVNAT 218
+H A G + + + KG L +K + GFTPL AS FG++ VR+L+E GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 219 TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
+ L AS G I+ LLL N +G T L
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVL 47
A NH V LL++G + T + G+TP+ +A+ G+ +V V+
Sbjct: 109 AVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
PD + T L + +G+T IA L+++ A+ N Q +P+H A + G + +++L
Sbjct: 29 PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
+ GA++ G P+H A + GH V+ L + + L+ + G TPL +A G
Sbjct: 88 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ 146
Query: 203 NMVRYL 208
++V L
Sbjct: 147 DLVDIL 152
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + G P
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+H+A G +V +L ++++ G TPL A Q+G ++D+L G
Sbjct: 105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
SP+V+ S +P+H AA G + ++L++ A+VN P+H+A + G A+V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
L ++ +++ + GLTPL A + G +++DIL
Sbjct: 120 LAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
L+++GA+ + +G +P+H A+ G L+ ++ LVE+GA+VN G P+H A Q+G
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
++ L A + + G T L +A + G
Sbjct: 114 TAVVS-FLAAESDLHRRDARGLTPLELALQRG 144
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
FG + L++ GA+ N G +P+H A++ G + + +L+ GA N G
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 259 LNIAQKLGYIS 269
+++A + G+ +
Sbjct: 105 IHLAVQEGHTA 115
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATED--GFTPLAVAMQQGHDRVVAVL 47
+A QE H VV +L ++ L D G TPL +A+Q+G +V +L
Sbjct: 107 LAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
PD + T L + +G+T IA L+++ A+ N Q +P+H A + G + +++L
Sbjct: 35 PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 93
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
+ GA++ G P+H A + GH V+ L + + L+ + G TPL +A G
Sbjct: 94 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ 152
Query: 203 NMVRYL 208
++V L
Sbjct: 153 DLVDIL 158
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + G P
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
+H+A G +V +L ++++ G TPL A Q+G ++D+L G P
Sbjct: 111 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
SP+V+ S +P+H AA G + ++L++ A+VN P+H+A + G A+V
Sbjct: 66 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 125
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
L ++ +++ + GLTPL A + G +++DIL
Sbjct: 126 LAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
L+++GA+ + +G +P+H A+ G L+ ++ LVE+GA+VN G P+H A Q+G
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
++ L A + + G T L +A + G
Sbjct: 120 TAVVS-FLAAESDLHRRDARGLTPLELALQRG 150
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
FG + L++ GA+ N G +P+H A++ G + + +L+ GA N G
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 259 LNIAQKLGYIS 269
+++A + G+ +
Sbjct: 111 IHLAVQEGHTA 121
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATED--GFTPLAVAMQQGHDRVVAVL 47
+A QE H VV +L ++ L D G TPL +A+Q+G +V +L
Sbjct: 113 LAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
A + G+ V +L++ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + ++ K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 190 FTPLHIASHFGQLNMVRYL 208
T I+ G ++ L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AAR+G D+ + IL+ GA + +K K G TPLH+A+ G L +V+ L+E GA+V A G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 223 YTPL 226
T
Sbjct: 91 KTAF 94
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
A+ GQ + VR L+ NGA+V A G TPLH A++ G + ++ LLL AGA A G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 256 QTALNIA 262
+TA +I+
Sbjct: 91 KTAFDIS 97
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
AA G + +L+ A+V + K+ TPLH+A + G + +V+LL+ GA++ A+ + G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 157 LTPLHCAARSGHDNVIDIL 175
T + +G++++ +IL
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
K + TPLH+AA G+ + +LL++ A+V Q K T ++ G + E+L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
AA+ D VR L++ G + ++G TPL +A + GH VV +LLE
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 91 FTPLHIA-----AHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
F PL +A + G ++ + +I + + + IT LH A G +V+ L+
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
G N+ A DG TPLHCAA + V L+E GAA+++ T
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
G+ +V+ +I + + +G+T LH A +GH ++ L++ G + + G+TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
H A+ + + ++LVE+GA V A T Y+ + A+ +
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTAADK 143
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T LH A G +V++LV+ G NVNA + G+TPLH A+ V + L+ +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 249 NATT-NHGQTALNIAQKL--GY 267
A T + QTA + +++ GY
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGY 151
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
P + ++ T LH A G+T I + L+Q NVN TPLH A V + +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 142 LISKGANIEAKT 153
L+ GA + A T
Sbjct: 122 LVESGAAVFAMT 133
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 7 HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
H +V++L+ G N A DG+TPL A + +V L+E+
Sbjct: 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 148 NIEAKTRDGLTPLHCAA-RSGHDNVID--ILIEKGAALY--------SKTKAGFTPLHIA 196
+IE R+G T L A G D V +L+EKGA + S+ G T LH A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 197 SHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
+ +V+YLV E G+N + G TP+ A+Q+GR+ ++ L+ GA A
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 256 QTALNIAQ 263
TA +AQ
Sbjct: 347 HTARQLAQ 354
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 135 KVAMVELLISKGANIE---AKTRD-----GLTPLHCAARSGHDNVIDILI-EKGAALYSK 185
+VA +LL+ KGA ++ A +D G T LH AA+ + ++ L+ EKG+ +
Sbjct: 250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQ 309
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
+ G TP+ +A+ G++ +V YL++ GA+V A +T A I+D+
Sbjct: 310 DEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 92 TPLHIAAHYGNTNIAELLI-QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
T LH AA N I + L+ +K +N + Q + TP+ +A + G++ +V LI +GA++E
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
Query: 151 AKTRDGLTPLHCAARSGHDNVIDIL 175
A T A + H N++DI
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIF 365
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 2 AAQENHDGVVRYLL-SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
AAQ ++ +V+YL+ KG N+ EDG TP+ +A Q+G VV L++
Sbjct: 286 AAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 91 FTPLHI---AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA 147
F PL + ++ G ++ + +I + + + IT LH A G +V+ L+ G
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
N+ A DG TPLHCAA + V L+E GAA+++ T
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
G+ +V+ +I + + +G+T LH A +GH ++ L++ G + + G+TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
H A+ + + ++LVE+GA V A T Y+ + A+ +
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTAADK 143
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T LH A G +V++LV+ G NVNA + G+TPLH A+ V + L+ +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 249 NATT-NHGQTALNIAQKL--GY 267
A T + QTA + +++ GY
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGY 151
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
P + ++ T LH A G+T I + L+Q NVN TPLH A V + + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 143 ISKGANIEAKT 153
+ GA + A T
Sbjct: 123 VESGAAVFAMT 133
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 7 HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
H +V++L+ G N A DG+TPL A + +V L+E+
Sbjct: 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIE 150
TPL+IA H + IA+ LI + A++N Q + +P A G+ ++ ++ ++
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLN-----M 204
R G L AA GH + + +L+E G + + G+T L A + N +
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
V+ L+ENGA+ + N G T + A+Q+G I +L
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPL++A + + + LI +GA+I + +P A G ++ +++ +
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 185 K-TKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQAS--QQGRVL---I 237
K + G L A+ G ++ V+ L+E+G +++ + GYT L +A ++G L I
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 238 IDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
+ LL+ GA + N G+TA++ A + GY
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGY 190
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG-AGAQ 247
G TPL+IA H + + + L++ GA++N ++ +P A QGR I+ +L A
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 248 PNATTNHGQTALNIAQKLGYIS 269
N +G AL A + G+I
Sbjct: 99 LNKHNRYGGNALIPAAEKGHID 120
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ G PLH+A+ G L +V +LV++ A NV + G T A GR ++ L+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
GA
Sbjct: 159 NGA 161
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
G+ + L+ +GA K + GF +H A+ G L+ ++ L+EN A+VN N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
H A+++G + +++ L+ A NH G TA ++A+ G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+PD+K + F +H AA G + + L++ A+VN + PLH+A K G + +VE
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
L+ A N+ + G T A G + V+ ++ GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 30/139 (21%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXX 69
+ R LL +G N L GF + A + G + LLEN
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQA----------------- 94
Query: 70 XXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLH 128
+++ N PLH+AA G+ + E L++ A NV ++ T
Sbjct: 95 ------------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 129 VACKWGKVAMVELLISKGA 147
+A +G+ +V L+ + GA
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T L + G + R L+ GAN + G+ +H A++ G + + LL A
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 249 NATTNHGQTALNIAQKLGYI 268
N N G L++A K G++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHL 116
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 51/222 (22%)
Query: 92 TPLHIAAHYGNTNIAELLI---QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
T LH+A + + + L+ H ++ Q T LH+A G+ + VE L + GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA--------------------------- 181
+ R G T LH A R +L++ +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 182 --------------------LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN-ATTN 220
L ++ G TPLH+A MVR L + GA++N
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
G TPLH A + +++LLL AGA P A G+T L A
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVR 206
+EA+ DG TPLH A ++ +L + GA L + G TPLH+A +++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
L++ GA+ A G TPL A + ++ LL GA
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 153 TRDGLTPLHCAARSGHDNVIDILIEKGAA---LYSKTKAGFTPLHIASHFGQLNMVRYLV 209
T DG T LH A H+ +D L+ A L + G T LH+A+ G+ + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 210 ENGANVNATTNLGYTPLHQASQ 231
GA V G+T LH A +
Sbjct: 66 AAGAGVLVAERGGHTALHLACR 87
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+A ++ ELL++ A+ + TPL A + LL + GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Query: 152 KTRDGLTP 159
D L+P
Sbjct: 254 DGGDKLSP 261
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGAN---VNATTNLGYTPLHQASQQGRVLIIDLLL 242
T+ G T LH+A + +L+ A ++ +LG T LH A+ G ++ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 243 GAGAQPNATTNHGQTALNIAQKL 265
AGA G TAL++A ++
Sbjct: 66 AAGAGVLVAERGGHTALHLACRV 88
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 51/222 (22%)
Query: 92 TPLHIAAHYGNTNIAELLI---QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
T LH+A + + + L+ H ++ Q T LH+A G+ + VE L + GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA--------------------------- 181
+ R G T LH A R +L++ +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 182 --------------------LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN-ATTN 220
L ++ G TPLH+A MVR L + GA++N
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
G TPLH A + +++LLL AGA P A G+T L A
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVR 206
+EA+ DG TPLH A ++ +L + GA L + G TPLH+A +++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
L++ GA+ A G TPL A + ++ LL GA
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 153 TRDGLTPLHCAARSGHDNVIDILIEKGAA---LYSKTKAGFTPLHIASHFGQLNMVRYLV 209
T DG T LH A H+ +D L+ A L + G T LH+A+ G+ + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 210 ENGANVNATTNLGYTPLHQASQ 231
GA V G+T LH A +
Sbjct: 66 AAGAGVLVAERGGHTALHLACR 87
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+A ++ ELL++ A+ + TPL A + LL + GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Query: 152 KTRDGLTP 159
D L+P
Sbjct: 254 DGGDKLSP 261
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGAN---VNATTNLGYTPLHQASQQGRVLIIDLLL 242
T+ G T LH+A + +L+ A ++ +LG T LH A+ G ++ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 243 GAGAQPNATTNHGQTALNIAQKL 265
AGA G TAL++A ++
Sbjct: 66 AAGAGVLVAERGGHTALHLACRV 88
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ G PLH+A+ G L +V +LV++ A NV + G T A GR ++ L+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
GA
Sbjct: 159 NGA 161
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
G+ + L+ +GA K + GF +H A+ GQL+ ++ L+E A+VN N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
H A+++G + +++ L+ A NH G TA ++A+ G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+PD+K + F +H AA G + + L++ A+VN + PLH+A K G + +VE
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
L+ A N+ + G T A G + V+ ++ GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T L + G + R L+ GAN + G+ +H A++ G++ + LL A
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 249 NATTNHGQTALNIAQKLGYI 268
N N G L++A K G++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHL 116
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ G PLH+A+ G L +V +LV++ A NV + G T A GR ++ L+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
GA
Sbjct: 159 NGA 161
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
G+ + L+ +GA K + GF +H A+ G L+ ++ L+E A+VN N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
H A+++G + +++ L+ A NH G TA ++A+ G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+PD+K + F +H AA G + + L++ A+VN + PLH+A K G + +VE
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
L+ A N+ + G T A G + V+ ++ GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T L + G + R L+ GAN + G+ +H A++ G + + LL A
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 249 NATTNHGQTALNIAQKLGYI 268
N N G L++A K G++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHL 116
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ G PLH+A+ G L +V +LV++ A NV + G T A GR ++ L+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
GA
Sbjct: 159 NGA 161
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
G+ + L+ +GA K + GF +H A+ G L+ ++ L+E A+VN N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
H A+++G + +++ L+ A NH G TA ++A+ G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+PD+K + F +H AA G + + L++ A+VN + PLH+A K G + +VE
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
L+ A N+ + G T A G + V+ ++ GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T L + G + R L+ GAN + G+ +H A++ G + + LL A
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 249 NATTNHGQTALNIAQKLGYI 268
N N G L++A K G++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHL 116
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN---ITPLHVACKWGKVAM 138
SP + PL + T E++ Q +N+ ++ N IT LH A ++
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI-LIEKGAALYSKT 186
V+ LI+ GAN+ + G TPLHCAA S +D VI + L++ GAA+++ T
Sbjct: 70 VDFLITAGANVNSPDSHGWTPLHCAA-SCNDTVICMALVQHGAAIFATT 117
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
G++ +V+ + + + +G+T LH A + +++D LI GA + S G+TPL
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 194 HIASHFGQLNMVRYLVENGANVNATT 219
H A+ + LV++GA + ATT
Sbjct: 92 HCAASCNDTVICMALVQHGAAIFATT 117
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 138 MVELLISKGANIEAKTRDGLTPLHC---AARSGHDNVIDILIEKGAALYSKTKAGFTPLH 194
M +L G+ +A+ R L PL AA +G V+ +++ + G T LH
Sbjct: 1 MRSVLRKAGSPRKAR-RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59
Query: 195 IASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT-N 253
A ++V +L+ GANVN+ + G+TPLH A+ +I L+ GA ATT +
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119
Query: 254 HGQTAL 259
G TA
Sbjct: 120 DGATAF 125
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 81 HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVE 140
+ P + T LH A N +I + LI ANVN+ H TPLH A +
Sbjct: 45 NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM 104
Query: 141 LLISKGANIEAKT-RDGLTPLH 161
L+ GA I A T DG T
Sbjct: 105 ALVQHGAAIFATTLSDGATAFE 126
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 175 LIEKGAALYSKTKAGFTPLHI---ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
++ K + +A PL + A+ G+L +V+ V+ + + G T LH A
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63
Query: 232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
I+D L+ AGA N+ +HG T L+ A
Sbjct: 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCA 94
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ G PLH+A+ G L +V +LV++ A NV + G T A GR ++ L+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
GA
Sbjct: 159 NGA 161
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
G+ + L+ +GA K + G +H A+ G L+ ++ L+E A+VN N G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
H A+++G + +++ L+ A NH G TA ++A+ G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+PD+K + +H AA G + + L++ A+VN + PLH+A K G + +VE
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
L+ A N+ + G T A G + V+ ++ GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G T L + G + R L+ GAN + G +H A++ G + + LL A
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 249 NATTNHGQTALNIAQKLGYI 268
N N G L++A K G++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHL 116
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%)
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
L ++ +++A+ DG TPL AAR + +++ LI A + + G + LH A+
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
++ L++NGAN + N TPL A+++G +LL A + T + + +I
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 262 AQK 264
AQ+
Sbjct: 121 AQE 123
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
L + L ++ G TPL +A+ M+ L+ + A+VNA +LG + LH A+
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
V +LL GA + N +T L +A + G
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREG 92
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 52/127 (40%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
D + + TPL +AA + E LI HA+VN + LH A V +L+
Sbjct: 9 DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 68
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
GAN + + TPL AAR G +L++ A P IA +
Sbjct: 69 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 128
Query: 204 MVRYLVE 210
+VR L E
Sbjct: 129 IVRLLDE 135
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPL +A + M+E LI+ A++ A G + LH AA + + +L++ GA
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
+ TPL +A+ G + L+++ AN + T ++ P A ++ I+ LL
Sbjct: 77 QNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
PLH AA GN + + VN K T L+ AC G +VE L ++ NIE
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNIELN 134
Query: 153 TRDGL--TPLHCAARSGHDNVIDILIEKGA 180
++ L T LH AA G+ +++ +L+ KGA
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNA 217
PLH AA+ G+ + + ++ + KAG T L+ A H G ++V L + +N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
LG T LH A+ +G I+ LLL GA+ + NI +KL +
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR--------NIEKKLAF 177
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 92 TPLHIAAHYGNTNIAE-LLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA--- 147
T L+ A H G+ +I E L Q + +N Q K T LH A G +V+LL++KGA
Sbjct: 108 TALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Query: 148 --NIEAK-TRDGLTPLHCAA 164
NIE K D T CA+
Sbjct: 168 LRNIEKKLAFDXATNAACAS 187
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
L AA G L++ AN N + P+ V G + ELL+ GA
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 154 RDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
LT P+H AAR G + + +L GA L + G P+ +A G ++ RYL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
L AA G + L+E GA + G P+ + G + L+ +GA N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 220 NLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
T P+H A+++G + + +L AGA+ + G+ +++A++LG+
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANV-----NNQAKHNITPLHVACKWGKVAMVELLISKG 146
T LHIAA Y N A +L++ + ++ T LH+A V +V L+++G
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 147 ANIEAKTRD-------------GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
A++ A+ G PL AA G + ++ +LIE GA + ++ G T L
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Query: 194 HI 195
HI
Sbjct: 159 HI 160
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 92 TPLHIAAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI- 149
+PL +AA + +++LL + V+ + T LH+A + + +L+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 150 ----EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-------------GFTP 192
++ +G T LH A + + N++ L+ +GA++ ++ G P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH 227
L A+ G +VR L+E+GA++ A +LG T LH
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 125 TPLHVAC-KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL- 182
TP A K + A+ +LL + +++A +G T L A G D + +L E GA L
Sbjct: 47 TPWWTAARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
+ + G T LH+A+ + + +V LVE GA++ G T L A +
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN- 216
TP AAR + + L+E + + + G T L + G VR L E GA+++
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
G T LH A+ R +++ L+ GA G TAL +A+++
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 81 HSPDVKSNSHF---------TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131
HSP +S+ TP AA + L++ +V+ ++ T L
Sbjct: 27 HSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVA 85
Query: 132 KWGKVAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF 190
G V LL GA+++ + R GLT LH AA V++ L+E GA + + + G
Sbjct: 86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL 145
Query: 191 TPLHIASHF 199
T L +A
Sbjct: 146 TALELAREI 154
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
+H AAR G + + LIE G + + + G T LH+A FG ++ +YL A+V
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVH 79
Query: 220 NL--GYTPLHQASQQGRV-LIIDLLLGA---GAQPNATTNH-----------------GQ 256
+L G P+H A + L++ L+ GA G P + N GQ
Sbjct: 80 SLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQ 139
Query: 257 TALNIAQKLG 266
TAL+ LG
Sbjct: 140 TALHWCVGLG 149
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
+H+AA G T+ LI+ + Q + T LH+ACK+G V + L S G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV--HSL 81
Query: 154 RDGLTPLHCAARSGHDNVIDILI----EKGAALYS-----------------KTKAGFTP 192
G P+H A + +++ L+ E+G S K G T
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTA 141
Query: 193 LHIASHFGQ--LNMVRYLVENGANVNATTNLGYTPLHQASQ 231
LH G L ++ LV+ GA+ A TPL +A +
Sbjct: 142 LHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXE 182
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN--QAKHNITPLHVACKWGK---- 135
SP +++ T LH+A +G + A+ L A+V H P+H+A K
Sbjct: 45 SPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVXANKTDLV 100
Query: 136 VAMVELLISKGANIEA-----------------KTRDGLTPLHCAARSGHD--NVIDILI 176
VA+VE +G E+ K G T LH G + I IL+
Sbjct: 101 VALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILV 160
Query: 177 EKGAALYSKTKAGFTPLHIASHF 199
+ GA+ +K KA TPL A F
Sbjct: 161 QLGASPTAKDKADETPLXRAXEF 183
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA- 180
N +HVA + G+ V LI G + + R G T LH A + G + L G
Sbjct: 19 ENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
Query: 181 -ALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+L+ G P+H+A + ++V LVE
Sbjct: 79 HSLWH----GQKPIHLAVXANKTDLVVALVE 105
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 139 VELLISKGANIEAKTRDGLTPLHCAA----RSGHDNVIDILIEKGA-ALYSKTKAGFTPL 193
+++L+ GA+ AK + TPL A R D D + K + L K G + L
Sbjct: 156 IKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHL 215
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
H A ++ VE G +VN N PL+ + + VL+ LL
Sbjct: 216 HWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELL 264
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
+ F +LN ++ EN + H A+++G+ + L+ G P G
Sbjct: 6 TDFPKLNRIKSDDENXEKI-----------HVAARKGQTDEVRRLIETGVSPTIQNRFGC 54
Query: 257 TALNIAQKLGYI 268
TAL++A K G +
Sbjct: 55 TALHLACKFGCV 66
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 125 TPLHVAC-KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL- 182
TP A K + A+ +LL + +++A +G T L A G D + +L E GA L
Sbjct: 46 TPWWTAARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
+ + G T LH+A+ + + +V LVE GA++ G T L A +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 81 HSPDVKSNSHF---------TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131
HSP +S+ TP AA + L++ +V+ ++ T L
Sbjct: 26 HSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVA 84
Query: 132 KWGKVAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF 190
G V LL GA+++ + R GLT LH AA V++ L+E GA + + + G
Sbjct: 85 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL 144
Query: 191 TPLHIASHF 199
T L +A
Sbjct: 145 TALELAREI 153
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN- 216
TP AAR + + L+E + + + G T L + G VR L E GA+++
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
G T LH A+ R +++ L+ GA G TAL +A+++
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 114 ANVN--NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
A+VN N + N TPL A + E L+ GAN+ G PLH A GH +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ +++GA L ++ G PL IA ++V L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
TPL A+ L +L++NGANVN + G PLH A+ G + L L GA A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 251 TTNHGQTALNIAQK 264
+ G+ L IA +
Sbjct: 297 RDSEGRDPLTIAME 310
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 92 TPLHIAAHYGNTNIA-ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPL I A N+ +A E L+Q ANVN PLH A G + L + +GA++
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 151 AKTRDGLTPLHCAARSGHDNVIDIL 175
A+ +G PL A + + +++ +L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D TPL A + + L++ GA + AG PLH A+ G + ++ GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLL 241
++ A + G PL A + I+ LL
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 114 ANVN--NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
A+VN N + N TPL A + E L+ GAN+ G PLH A GH +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ +++GA L ++ G PL IA ++V L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
TPL A+ L +L++NGANVN + G PLH A+ G + L L GA A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 251 TTNHGQTALNIAQK 264
+ G+ L IA +
Sbjct: 297 RDSEGRDPLTIAME 310
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 92 TPLHIAAHYGNTNIA-ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPL I A N+ +A E L+Q ANVN PLH A G + L + +GA++
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 151 AKTRDGLTPLHCAARSGHDNVIDIL 175
A+ +G PL A + + +++ +L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D TPL A + + L++ GA + AG PLH A+ G + ++ GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLL 241
++ A + G PL A + I+ LL
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 114 ANVN--NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
A+VN N + N TPL A + E L+ GAN+ G PLH A GH +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
+ +++GA L ++ G PL IA ++V L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
TPL A+ L +L++NGANVN + G PLH A+ G + L L GA A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 251 TTNHGQTALNIAQK 264
+ G+ L IA +
Sbjct: 297 RDSEGRDPLTIAME 310
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 92 TPLHIAAHYGNTNIA-ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPL I A N+ +A E L+Q ANVN PLH A G + L + +GA++
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 151 AKTRDGLTPLHCAARSGHDNVIDIL 175
A+ +G PL A + + +++ +L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
+D TPL A + + L++ GA + AG PLH A+ G + ++ GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLL 241
++ A + G PL A + I+ LL
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 79 NDHSPDVKSNSHFTPLHIAAH---YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
N H PD T LH+A + +I + L+Q N++ Q T LH C
Sbjct: 164 NGHEPDE------TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217
Query: 136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
++LL+ A+IE G TPL A R H++ ++L +
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 191 TPLHIASHF---GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
T LH+A L++V +LV+N N++ T G T LH + LLL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 248 PNATTNHGQTALNIAQKL 265
G+T L+IA++L
Sbjct: 231 IEIANESGETPLDIAKRL 248
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 125 TPLHVACK---WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
T LH+A + + +V+ L+ N++ +T G T LH + + + +L+ A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 182 LYSKTKAGFTPLHIASHF 199
+ ++G TPL IA
Sbjct: 231 IEIANESGETPLDIAKRL 248
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 158 TPLHCAARSGHDN---VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
T LH A RS ++D L++ L +T G T LH ++ L+ A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 215 VNATTNLGYTPLHQASQ 231
+ G TPL A +
Sbjct: 231 IEIANESGETPLDIAKR 247
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
L AA G L++ A N + P+ V G + ELL+ GA
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 154 RDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
LT P+H AAR G + + +L GA L + G P+ +A G ++ RYL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
L AA G + L+E GA + G P+ + G + L+ +GA N
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 220 NLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
T P+H A+++G + + +L AGA+ + G+ +++A++LG+
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Query: 125 TPLHVACKWGKVAMVELLISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDI-----LIEK 178
T LH + +V+ L+ G ++ + R G +P+ A + DI L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
G ++AG T L +A G++++V+ L+ A+VN + G T L A + G I
Sbjct: 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232
Query: 239 DLLLGA-GAQPNATTNHGQTALNIAQKLG 266
LLL + T G TAL +A G
Sbjct: 233 GLLLAVPSCDISLTDRDGSTALMVALDAG 261
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLIS-KGANIE 150
T L +A +G ++ + L+ A+VN Q T L AC+ G + LL++ +I
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEK 178
RDG T L A +G + +L +
Sbjct: 245 LTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 115 NVNNQAKH-NITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
N+N +A T L +A G+V +V+ L++ A++ + DG T L CA GH +
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 174 ILIEKGAALYSKT-KAGFTPLHIASHFGQ 201
+L+ + S T + G T L +A GQ
Sbjct: 234 LLLAVPSCDISLTDRDGSTALMVALDAGQ 262
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSK-TKAGFTPLHIASHF-----GQLNMVRYL 208
+G T LH + + V+ L++ G K +AG++P+ + + + V L
Sbjct: 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQL 169
Query: 209 VENGANVNA-TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
G N+NA + G T L A GRV ++ LL A N + G TAL A + G+
Sbjct: 170 FRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
L AA G L++ A+ N + P+ V G + ELL+ GA
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 154 RDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
LT P+H AAR G + + +L GA L G P+ +A G ++ RYL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
L A+ GQ+ VR L+E GA+ NA G P+ Q G + +LLL GA+PN
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNC 72
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
L AA G + L+E GA + + G P+ + G + L+ +GA N
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74
Query: 220 NLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
T P+H A+++G + + +L AGA+ + G+ +++A++ G+
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGA--------ALYSKTKA--GF----TPLHIASHFGQ 201
G T LH A + ++ +L+E GA + KTK GF PL +A+ Q
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 202 LNMVRYLVENG---ANVNATTNLGYTPLH 227
L +V++L++N A+++A ++G T LH
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLH 189
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 37/154 (24%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI--------------TPLHVACKWGKVA 137
T LHIA N + LL++ A+V A + PL +A ++A
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 138 MVELLISKG---ANIEAKTRDGLTPLHCAARSGHDNVID-----------ILIEKGAALY 183
+V+ L+ A+I A+ G T LH DN +D ILI GA L+
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVA-DNTVDNTKFVTSXYNEILI-LGAKLH 220
Query: 184 SKTK-------AGFTPLHIASHFGQLNMVRYLVE 210
K G TPL +A+ G++ ++ Y+++
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTN--------------LGYTPLHQASQQGR 234
G T LHIA +V LVENGA+V A N G PL A+ +
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 235 VLIIDLLLGAGAQP 248
+ I+ LL QP
Sbjct: 161 LAIVKFLLQNSWQP 174
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 39/161 (24%)
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
LH+A + + V+LL+ GA++ + H +G Y
Sbjct: 107 LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH----------------QGTCFY--- 147
Query: 187 KAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLH------QASQQGRVLI 237
G PL +A+ Q ++V YL+EN A++ AT +LG T LH S + L+
Sbjct: 148 -FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV 206
Query: 238 I---DLLLGAGAQPNAT------TNH-GQTALNIAQKLGYI 268
I D LL GA+ T +NH G T L +A K G I
Sbjct: 207 IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI 247
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVN-------------ATTNLGYTPLHQASQQGRV 235
G + LHIA L V+ LVENGA+V+ G PL A+ +
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 236 LIIDLLLGAGAQP---NATTNHGQTAL 259
++ LL QP AT + G T L
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVL 189
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 39/163 (23%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
+ LH+A + + V+LL+ GA++ + H +G Y
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH----------------QGTCFY- 134
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLHQA------SQQGRV 235
G PL +A+ Q ++V YL+EN A++ AT +LG T LH S +
Sbjct: 135 ---FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSA 191
Query: 236 LII---DLLLGAGAQPNAT------TNH-GQTALNIAQKLGYI 268
L+I D LL GA+ T +NH G T L +A K G I
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI 234
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVN-------------ATTNLGYTPLHQASQQGRV 235
G + LHIA L V+ LVENGA+V+ G PL A+ +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 236 LIIDLLLGAGAQP---NATTNHGQTAL 259
++ LL QP AT + G T L
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVL 176
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 127 LHVACK---WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
LH+A K + +V+ +I G +++AK DG T LH AA + + +L++ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 184 SKTKAGFTPLHIA 196
+ +AG T L IA
Sbjct: 235 TVNEAGETALDIA 247
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 193 LHIA---SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
LH+A ++ L +V ++++NG +++A G T LH A+ + + LLL A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 250 ATTNHGQTALNIAQK 264
G+TAL+IA+K
Sbjct: 235 TVNEAGETALDIARK 249
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 127 LHVACK---WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
LH+A K + +V+ +I G +++AK DG T LH AA + + +L++ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 184 SKTKAGFTPLHIA 196
+ +AG T L IA
Sbjct: 254 TVNEAGETALDIA 266
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 193 LHIA---SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
LH+A ++ L +V ++++NG +++A G T LH A+ + + LLL A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 250 ATTNHGQTALNIAQK 264
G+TAL+IA+K
Sbjct: 254 TVNEAGETALDIARK 268
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF--------------TPLHIASHFGQ 201
G T LH A + +++L+EKGA ++++ + F PL +A+ Q
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 202 LNMVRYLVENG---ANVNATTNLGYTPLH 227
++V YL ENG A++ + G T LH
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLH 181
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRD--------------GLTPLHCAARSGHDN 170
T LH+A + VELL+ KGA++ A+ R G PL AA + +
Sbjct: 95 TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154
Query: 171 VIDILIEKG---AALYSKTKAGFTPLH----IASHFGQ-----LNMVRYLVENGANVNAT 218
++ L E G A L + G T LH IA + + M L+ A +
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214
Query: 219 TNL-------GYTPLHQASQQGRVLII 238
TNL G +PL A++ G++ I
Sbjct: 215 TNLEALLNNDGLSPLMMAAKTGKIGIF 241
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 33/152 (21%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI--------------TPLHVACKWGKVA 137
T LHIA + ELL++K A+V+ QA+ PL +A +
Sbjct: 95 TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154
Query: 138 MVELLISKG---ANIEAKTRDGLTPLH---CAARSGHDN------VIDILIEKGAALYSK 185
+V L G A++ + G T LH A + +N + D+L+ K A L+
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214
Query: 186 TKA-------GFTPLHIASHFGQLNMVRYLVE 210
T G +PL +A+ G++ + ++++
Sbjct: 215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
LH+A + + V+LL+ GAN+ A+ R +G Y
Sbjct: 99 LHIAIEKRSLQCVKLLVENGANVHARA---------CGRFFQKG-------QGTCFY--- 139
Query: 187 KAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLH 227
G PL +A+ Q ++V YL+EN A++ AT + G T LH
Sbjct: 140 -FGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH 182
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTN-------------LGYTPLHQASQQGRV 235
G + LHIA L V+ LVENGANV+A G PL A+ +
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 236 LIIDLLLGAGAQP---NATTNHGQTAL 259
++ LL QP AT + G T L
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVL 181
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
+ A+ +G T L+ AAR G+ +++D L++ GA + K+G P+ +
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 229
G TPLH + L +V++LV++G+N N+G + L +A
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 185
PLH A +V++L+ G + G T L+ A SG+ + + ++K L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 186 TKAGF-TPLHIASHFGQLNMVRYLVENGANVNATTNLG--YTPLHQASQQGRVLIIDLLL 242
K G+ T + A +++V Y + + + +T +L + +H + G V LLL
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFL---SEIPSTFDLAILLSCIHITIKNGHVDXXILLL 181
Query: 243 GAGAQPNA 250
N
Sbjct: 182 DYXTSTNT 189
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 194 HIASHFGQL-NMVRYLVENGANVNATTNL--GYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
H AS++ N VR LV N A NL PLHQA+ I+ +LL +G +
Sbjct: 32 HSASYYAIADNNVR-LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ 90
Query: 251 TTNHGQTALNIAQKLG 266
+ G TAL A G
Sbjct: 91 FDDKGNTALYYAVDSG 106
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRD--------------GLTPLHCAARSGHDN 170
T LH+A + VELL+++GA++ A+ R G PL AA + +
Sbjct: 93 TALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 152
Query: 171 VIDILIE---KGAALYSKTKAGFTPLH----IASHFGQ-----LNMVRYLVENGANVNAT 218
+++ L E K A + + G T LH IA + + M L+ A +
Sbjct: 153 IVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPD 212
Query: 219 TNL-------GYTPLHQASQQGRVLII 238
+NL G +PL A++ G++ I
Sbjct: 213 SNLEAVLNNDGLSPLMMAAKTGKIGIF 239
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 33/146 (22%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF--------------TPLHIASHFGQ 201
G T LH A + +++L+ +GA ++++ + F PL +A+ Q
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 150
Query: 202 LNMVRYLVEN---GANVNATTNLGYTPLH---------QASQQGRVLIIDLLLGAGAQ-- 247
++V YL EN A++ + G T LH + + + + DLLL A+
Sbjct: 151 PHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLF 210
Query: 248 PNAT-----TNHGQTALNIAQKLGYI 268
P++ N G + L +A K G I
Sbjct: 211 PDSNLEAVLNNDGLSPLMMAAKTGKI 236
>pdb|2R79|A Chain A, Crystal Structure Of A Periplasmic Heme Binding Protein
From Pseudomonas Aeruginosa
Length = 283
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 13 YLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
++L++ G + LAT +G+ P++V D V V+ + +G AL
Sbjct: 166 WVLNRAGARNLATHEGYKPISVEALAALDPVAVVIADRSLEGDAARAAL 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,305,073
Number of Sequences: 62578
Number of extensions: 301538
Number of successful extensions: 1703
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 716
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)