Query psy4998
Match_columns 318
No_of_seqs 255 out of 3107
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 23:10:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 6.1E-53 2.1E-57 364.5 34.7 307 2-312 87-430 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.8E-52 1.3E-56 359.5 33.7 282 1-282 53-371 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 4.6E-49 1.6E-53 328.9 33.4 276 2-282 32-328 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 8E-48 2.7E-52 314.0 31.7 256 27-282 4-280 (285)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.9E-47 6.4E-52 311.8 32.2 253 1-253 11-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 1.3E-46 4.5E-51 315.8 32.6 275 2-280 31-334 (351)
7 2fo1_E LIN-12 protein; beta-ba 100.0 9.7E-48 3.3E-52 324.6 20.7 271 4-280 75-371 (373)
8 3d9h_A CDNA FLJ77766, highly s 100.0 3.4E-46 1.2E-50 303.8 24.5 253 24-280 11-278 (285)
9 1yyh_A HN1;, notch 1, ankyrin 100.0 4.6E-46 1.6E-50 298.2 23.5 246 20-281 2-249 (253)
10 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-44 4.9E-49 290.8 23.0 246 27-276 2-259 (261)
11 1k1a_A B-cell lymphoma 3-encod 100.0 2.1E-44 7.2E-49 286.7 22.7 230 23-277 4-238 (241)
12 4g8k_A 2-5A-dependent ribonucl 100.0 3.6E-43 1.2E-47 293.3 29.8 255 27-281 24-299 (337)
13 3d9h_A CDNA FLJ77766, highly s 100.0 9.6E-44 3.3E-48 289.4 25.5 246 1-250 21-282 (285)
14 3b7b_A Euchromatic histone-lys 100.0 1.7E-43 5.9E-48 280.7 25.8 221 54-274 8-229 (237)
15 3ljn_A Hypothetical protein; a 100.0 1.9E-45 6.6E-50 310.2 15.2 259 19-279 11-313 (364)
16 3utm_A Tankyrase-1; tankyrase, 100.0 6.9E-44 2.4E-48 299.2 24.2 266 16-281 12-306 (351)
17 1oy3_D Transcription factor in 100.0 1.4E-43 4.7E-48 288.6 22.2 246 21-266 2-269 (282)
18 3aji_A 26S proteasome non-ATPa 100.0 4.6E-43 1.6E-47 277.1 23.6 223 57-279 6-229 (231)
19 3b7b_A Euchromatic histone-lys 100.0 2.8E-42 9.7E-47 273.7 26.7 225 19-243 2-231 (237)
20 2xai_A ASB-9, ankyrin repeat a 100.0 8.9E-43 3E-47 280.3 23.5 220 56-279 2-221 (261)
21 3aji_A 26S proteasome non-ATPa 100.0 9.4E-43 3.2E-47 275.4 23.3 222 27-248 5-231 (231)
22 3ljn_A Hypothetical protein; a 100.0 1.5E-42 5E-47 292.6 23.0 227 52-280 15-269 (364)
23 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-43 8.4E-48 297.7 17.6 244 2-248 101-372 (373)
24 4b93_B Ankyrin repeat domain-c 100.0 5E-43 1.7E-47 282.0 17.9 219 59-279 13-240 (269)
25 3kea_A K1L; tropism, ANK repea 100.0 1.9E-42 6.5E-47 281.6 19.4 255 6-272 11-269 (285)
26 3eu9_A Huntingtin-interacting 100.0 2.6E-41 9E-46 268.5 25.6 228 54-281 6-236 (240)
27 2dzn_A Probable 26S proteasome 100.0 9.9E-42 3.4E-46 269.0 21.6 218 57-277 2-227 (228)
28 2f8y_A Notch homolog 1, transl 100.0 1.7E-41 5.8E-46 266.7 22.3 213 68-280 2-216 (223)
29 1s70_B 130 kDa myosin-binding 100.0 5.4E-42 1.9E-46 281.5 18.0 264 2-274 5-283 (299)
30 3eu9_A Huntingtin-interacting 100.0 1.3E-40 4.3E-45 264.6 25.0 229 21-249 2-237 (240)
31 4b93_B Ankyrin repeat domain-c 100.0 2.4E-42 8.2E-47 278.0 14.6 225 24-248 7-245 (269)
32 2f8y_A Notch homolog 1, transl 100.0 9.5E-41 3.2E-45 262.4 23.4 215 6-249 2-218 (223)
33 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-40 7.8E-45 265.1 23.4 213 35-247 30-248 (253)
34 1sw6_A Regulatory protein SWI6 100.0 8.6E-43 3E-47 289.1 8.0 251 3-266 27-327 (327)
35 2dzn_A Probable 26S proteasome 100.0 2.8E-40 9.6E-45 260.6 21.8 214 28-244 2-227 (228)
36 3kea_A K1L; tropism, ANK repea 100.0 4.3E-41 1.5E-45 273.6 16.9 233 40-282 12-248 (285)
37 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-40 8.4E-45 263.2 19.6 217 1-246 15-240 (241)
38 1oy3_D Transcription factor in 100.0 5.2E-39 1.8E-43 261.5 22.9 230 52-281 4-251 (282)
39 2rfa_A Transient receptor pote 100.0 1.3E-37 4.5E-42 246.0 22.4 208 56-283 2-225 (232)
40 2rfa_A Transient receptor pote 100.0 1.3E-37 4.6E-42 245.9 21.9 205 27-251 2-226 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-39 3.9E-44 258.5 8.9 217 24-265 4-229 (236)
42 3hra_A Ankyrin repeat family p 100.0 1.4E-36 4.7E-41 234.8 24.5 189 89-277 4-200 (201)
43 1ikn_D Protein (I-kappa-B-alph 100.0 8.5E-39 2.9E-43 253.4 12.1 198 85-282 3-211 (236)
44 3hra_A Ankyrin repeat family p 100.0 1.5E-36 5E-41 234.6 24.1 191 55-245 3-201 (201)
45 1s70_B 130 kDa myosin-binding 100.0 5.4E-38 1.8E-42 257.7 16.9 235 1-244 46-286 (299)
46 2pnn_A Transient receptor pote 100.0 1.4E-37 4.9E-42 251.7 14.9 214 18-256 3-268 (273)
47 4gpm_A Engineered protein OR26 100.0 5.2E-36 1.8E-40 223.5 20.4 158 93-250 7-164 (169)
48 2etb_A Transient receptor pote 100.0 5.3E-37 1.8E-41 246.1 14.4 205 56-282 1-248 (256)
49 4gpm_A Engineered protein OR26 100.0 2E-35 6.7E-40 220.4 20.9 156 125-280 6-161 (169)
50 2etb_A Transient receptor pote 100.0 1.4E-36 4.8E-41 243.6 15.5 202 27-248 1-247 (256)
51 1sw6_A Regulatory protein SWI6 100.0 2.6E-37 8.9E-42 256.2 10.8 223 3-233 55-327 (327)
52 2pnn_A Transient receptor pote 100.0 4E-36 1.4E-40 243.3 14.6 206 80-285 3-263 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 5.5E-35 1.9E-39 234.9 15.5 206 55-282 3-252 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 7.3E-35 2.5E-39 234.2 13.7 206 25-249 2-252 (260)
55 4hbd_A KN motif and ankyrin re 100.0 7.6E-34 2.6E-38 229.8 15.5 188 92-279 78-274 (276)
56 2rfm_A Putative ankyrin repeat 100.0 3.7E-33 1.3E-37 213.9 17.6 162 117-278 29-190 (192)
57 4hbd_A KN motif and ankyrin re 100.0 3.8E-34 1.3E-38 231.5 12.3 187 59-245 78-273 (276)
58 3v30_A DNA-binding protein rfx 100.0 3.4E-33 1.2E-37 210.2 15.7 168 91-258 3-171 (172)
59 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.4E-32 8.1E-37 204.9 19.9 156 122-277 13-168 (169)
60 2rfm_A Putative ankyrin repeat 100.0 1.2E-32 4.2E-37 211.0 17.3 162 84-245 29-190 (192)
61 3v31_A Ankyrin repeat family A 100.0 2.5E-32 8.4E-37 204.5 18.5 159 122-280 2-160 (167)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.3E-32 7.8E-37 203.7 17.2 156 91-247 6-162 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.3E-32 2.2E-36 202.6 19.5 159 87-245 11-169 (169)
64 1awc_B Protein (GA binding pro 100.0 7.9E-32 2.7E-36 198.7 19.0 151 124-275 3-153 (153)
65 3v31_A Ankyrin repeat family A 100.0 4.8E-32 1.6E-36 202.9 17.2 160 89-248 2-161 (167)
66 2aja_A Ankyrin repeat family p 100.0 1.3E-35 4.4E-40 248.2 -3.8 248 5-274 76-368 (376)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 9E-32 3.1E-36 200.4 16.9 157 122-279 4-161 (162)
68 3v30_A DNA-binding protein rfx 100.0 5.9E-32 2E-36 203.4 15.7 168 58-225 3-171 (172)
69 3f6q_A Integrin-linked protein 100.0 2.3E-31 8E-36 201.4 16.1 163 90-252 5-168 (179)
70 2vge_A RELA-associated inhibit 100.0 2.1E-34 7.2E-39 226.3 -2.3 198 74-274 2-207 (229)
71 1awc_B Protein (GA binding pro 100.0 1.2E-30 4.2E-35 192.3 18.1 150 91-241 3-152 (153)
72 2vge_A RELA-associated inhibit 100.0 1.8E-34 6.1E-39 226.7 -3.2 194 45-241 2-207 (229)
73 3twr_A Tankyrase-2; ankyrin re 100.0 3.3E-31 1.1E-35 198.0 14.5 157 121-278 6-163 (165)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.1E-30 7.3E-35 191.7 17.9 152 124-277 3-155 (156)
75 3twr_A Tankyrase-2; ankyrin re 100.0 5.9E-31 2E-35 196.6 14.4 159 87-246 5-164 (165)
76 3f6q_A Integrin-linked protein 100.0 3.6E-30 1.2E-34 194.9 17.8 165 57-221 5-170 (179)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.8E-30 2.3E-34 189.0 17.4 153 90-244 2-155 (156)
78 2aja_A Ankyrin repeat family p 100.0 5.9E-34 2E-38 238.2 -5.5 256 6-278 45-342 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.3E-31 4.6E-36 212.2 7.6 179 88-267 3-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.7E-30 9.2E-35 204.7 8.1 206 55-263 3-226 (239)
81 1d9s_A Cyclin-dependent kinase 100.0 1.8E-28 6E-33 176.9 14.9 133 146-279 2-135 (136)
82 1bi7_B P16INK4A, MTS1, multipl 100.0 6.1E-29 2.1E-33 183.7 10.7 143 119-262 8-151 (156)
83 1d9s_A Cyclin-dependent kinase 100.0 1.8E-28 6.3E-33 176.8 12.5 133 114-247 3-136 (136)
84 3t8k_A Uncharacterized protein 100.0 6.4E-29 2.2E-33 188.2 9.6 154 124-279 7-178 (186)
85 3t8k_A Uncharacterized protein 100.0 3.5E-28 1.2E-32 184.1 9.9 160 91-252 7-184 (186)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 5.8E-27 2E-31 168.9 14.9 124 154-277 12-135 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.7E-26 5.7E-31 164.3 15.8 123 156-278 2-124 (126)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-27 5.2E-32 176.2 10.5 143 85-228 7-150 (156)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.2E-26 1.1E-30 162.8 16.4 126 122-247 1-126 (126)
90 3c5r_A BARD-1, BRCA1-associate 99.9 1.4E-27 4.8E-32 172.5 9.0 133 146-279 1-133 (137)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 3E-26 1E-30 165.2 14.9 125 121-245 12-136 (136)
92 3aaa_C Myotrophin, protein V-1 99.9 4.8E-25 1.7E-29 156.0 14.3 119 153-274 4-122 (123)
93 3c5r_A BARD-1, BRCA1-associate 99.9 5.7E-26 1.9E-30 164.0 8.5 128 118-245 5-132 (137)
94 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-24 5.7E-29 176.6 17.1 140 123-268 151-299 (301)
95 3deo_A Signal recognition part 99.9 6.5E-25 2.2E-29 166.4 12.6 139 121-277 42-181 (183)
96 3ui2_A Signal recognition part 99.9 6.4E-25 2.2E-29 174.1 13.0 141 121-279 43-184 (244)
97 3ehr_A Osteoclast-stimulating 99.9 5.9E-25 2E-29 172.1 8.6 133 153-285 70-203 (222)
98 1dcq_A PYK2-associated protein 99.9 1.5E-23 5.1E-28 169.1 16.4 125 157-281 131-264 (278)
99 3deo_A Signal recognition part 99.9 5.4E-24 1.8E-28 161.4 12.6 138 89-244 43-181 (183)
100 3ehr_A Osteoclast-stimulating 99.9 9.3E-25 3.2E-29 170.9 8.6 136 120-255 70-206 (222)
101 3ui2_A Signal recognition part 99.9 8.5E-24 2.9E-28 167.7 12.5 141 89-247 44-185 (244)
102 1dcq_A PYK2-associated protein 99.9 8.4E-23 2.9E-27 164.7 16.5 192 54-249 63-265 (278)
103 2b0o_E UPLC1; arfgap, structur 99.9 3.1E-23 1E-27 169.1 13.3 144 86-235 147-299 (301)
104 3aaa_C Myotrophin, protein V-1 99.9 2.6E-23 9E-28 147.0 11.2 108 56-163 6-113 (123)
105 3lvq_E ARF-GAP with SH3 domain 99.9 1.1E-22 3.9E-27 177.5 16.5 128 124-251 133-269 (497)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.8E-22 6.1E-27 135.2 12.1 90 189-278 2-91 (93)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2E-22 6.9E-27 134.9 12.3 93 155-247 1-93 (93)
108 3jue_A Arfgap with coiled-coil 99.9 2.3E-22 8E-27 167.5 15.2 126 155-280 198-326 (368)
109 3jue_A Arfgap with coiled-coil 99.9 2.4E-22 8.2E-27 167.4 14.0 144 122-265 198-347 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.9 6.4E-22 2.2E-26 172.7 15.6 129 156-284 132-269 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.9 1E-22 3.5E-27 142.2 7.6 109 151-259 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 4.8E-21 1.6E-25 133.6 8.0 108 119-226 5-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2E-20 6.7E-25 129.2 10.5 93 183-275 18-110 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 1.4E-18 4.8E-23 119.8 10.5 91 151-241 19-109 (110)
115 3mkq_B Coatomer subunit alpha; 86.6 4.5 0.00015 29.3 8.0 131 29-178 9-140 (177)
116 4g26_A Pentatricopeptide repea 79.0 9.7 0.00033 32.9 8.7 139 32-176 33-198 (501)
117 3mkq_B Coatomer subunit alpha; 64.9 14 0.00047 26.8 5.3 125 1-145 14-140 (177)
118 4g26_A Pentatricopeptide repea 46.1 27 0.00091 30.2 5.0 100 8-111 90-199 (501)
119 1gp8_A Protein (scaffolding pr 42.5 22 0.00075 18.1 2.2 19 259-277 17-35 (40)
120 3zrh_A Ubiquitin thioesterase 35.0 1.1E+02 0.0037 25.5 6.4 24 221-244 68-91 (454)
121 3zrh_A Ubiquitin thioesterase 33.9 1E+02 0.0035 25.7 6.1 46 4-49 31-90 (454)
122 3qil_A Clathrin heavy chain 1; 28.8 65 0.0022 21.6 3.5 21 29-49 36-56 (125)
123 3gvo_A Pumilio 2, pumilio homo 21.6 2.8E+02 0.0096 22.3 7.0 21 251-271 292-312 (351)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.1e-53 Score=364.51 Aligned_cols=307 Identities=42% Similarity=0.689 Sum_probs=203.2
Q ss_pred ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL 77 (318)
Q Consensus 2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll 77 (318)
|++.|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6666777777777777777666666666666666666666666666665432 333445555555555555555555
Q ss_pred hCCCCCCCCCCCCc---------------------------------hHHHHHHHcCCHHHHHHHHhccCCcccccCCCC
Q psy4998 78 ENDHSPDVKSNSHF---------------------------------TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI 124 (318)
Q Consensus 78 ~~~~~~~~~~~~~~---------------------------------~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~ 124 (318)
++|.+++..+..|. ||||+|+..++.+++++|++.+.+++..+..|.
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 246 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 55555555444444 555555555555555555555555555555566
Q ss_pred hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204 (318)
Q Consensus 125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 204 (318)
|||+.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 326 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 326 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHH
Confidence 66666666666666666666666666666677777777777777777777777777777777778888888888888888
Q ss_pred HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccceec
Q psy4998 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVT 284 (318)
Q Consensus 205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~ 284 (318)
+++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+.|+.+++++|+.......
T Consensus 327 v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~~~-- 404 (437)
T 1n11_A 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS-- 404 (437)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCS--
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcccccc--
Confidence 888888888888888888888888888888888888888888888888888888888888888888888876654322
Q ss_pred cchhhhccccccccccccceeeeecccc
Q psy4998 285 TTVTTIEEKYRVVAPEAMQEVYMSDSED 312 (318)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
.....++++...++.+.+.+...+++
T Consensus 405 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (437)
T 1n11_A 405 --FVLVSDKHRMSFPETVDEILDVSEDE 430 (437)
T ss_dssp --SCC----CCCCCCCCCCC--------
T ss_pred --ccccchhcccCCccccchhhcccccc
Confidence 23355677777888888866555444
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-52 Score=359.54 Aligned_cols=282 Identities=35% Similarity=0.577 Sum_probs=236.7
Q ss_pred CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL 76 (318)
Q Consensus 1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l 76 (318)
+|++.|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++.+ +..+.||||+|+..|+.+++++|
T Consensus 53 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~L 132 (437)
T 1n11_A 53 MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999998764 56688999999999999999999
Q ss_pred HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----
Q psy4998 77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK---- 152 (318)
Q Consensus 77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~---- 152 (318)
++++.+.+..+..|.||||+|+..|+.+++++|++.+.+++..+..|.|||+.|+..++.+++++|++.+.+++..
T Consensus 133 l~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 212 (437)
T 1n11_A 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212 (437)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTC
T ss_pred HhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 9999999999999999999999999999999999999888777777777777777666666666666665555444
Q ss_pred -----------------------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998 153 -----------------------------TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203 (318)
Q Consensus 153 -----------------------------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~ 203 (318)
+..|.|||++|+..|+.+++++|++++++++..+..|.||||+|+..++.+
T Consensus 213 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 292 (437)
T 1n11_A 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 444555555555555666666666666666666667777777777777777
Q ss_pred HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI 282 (318)
Q Consensus 204 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 282 (318)
++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|...+.+..
T Consensus 293 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence 8888888888888888889999999999999999999999999999999999999999999999999999998876543
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.6e-49 Score=328.88 Aligned_cols=276 Identities=27% Similarity=0.324 Sum_probs=255.0
Q ss_pred ccccChHHHHHHHHhcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998 2 AAQENHDGVVRYLLSKGGNQTLATE-DGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL 76 (318)
Q Consensus 2 A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l 76 (318)
|++.|++++|++|+++|++++.++. .|+||||+|+..|+.+++++|+++++. +..+.++++.++..+...++..+
T Consensus 32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF 111 (337)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence 8999999999999999999998876 599999999999999999999999765 55678999999999999999999
Q ss_pred HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccc----------cCCCChHHHHHHHcCcHHHHHHHHH-c
Q psy4998 77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ----------AKHNITPLHVACKWGKVAMVELLIS-K 145 (318)
Q Consensus 77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~-~ 145 (318)
+..+.+++..+..|.||+++|+..|+.++++++++.|++++.. +..|.||||+|+..|+.+++++|++ .
T Consensus 112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ 191 (337)
T 4g8k_A 112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 191 (337)
T ss_dssp HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS
T ss_pred hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887643 3458899999999999999999996 5
Q ss_pred CCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCC
Q psy4998 146 GANIEAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTN 220 (318)
Q Consensus 146 ~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~ 220 (318)
|++++..+..|.++++.++..+. ..++++|+++|++++.++..|.||||+|+..++.+++++|++. |++++.+|.
T Consensus 192 gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence 99999999999999998876554 4688999999999999999999999999999999999999985 899999999
Q ss_pred CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI 282 (318)
Q Consensus 221 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 282 (318)
.|.||||+|++.|+.+++++|+++|++++.+ +|+++|++.|+.++|++|...+..+-
T Consensus 272 ~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 272 DGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 9999999999999999999999999998754 59999999999999999999987653
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8e-48 Score=313.95 Aligned_cols=256 Identities=28% Similarity=0.348 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q psy4998 27 DGFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG 101 (318)
Q Consensus 27 ~~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 101 (318)
+|.|||+.|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 356788888888888888888887654 344678888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHHcCCHHH
Q psy4998 102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK----------TRDGLTPLHCAARSGHDNV 171 (318)
Q Consensus 102 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~ 171 (318)
+.+++++|+++|++++..+..|.|||+.|+..|+.+++++|++.|.+++.. +..|.|||+.|+..|+.++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888888888877766 6678888888888888888
Q ss_pred HHHHHHc-CCCCcCCCCCCCcHhHHHhhcCC----HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh-CC
Q psy4998 172 IDILIEK-GAALYSKTKAGFTPLHIASHFGQ----LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG-AG 245 (318)
Q Consensus 172 ~~~ll~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g 245 (318)
+++|++. |.+++..+..|.||||+|+..++ .+++++|+++|++++.++..|.||||+|+..|+.+++++|++ .|
T Consensus 164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 8888887 88888888888888888888888 888888888888888888888888888888888888888888 78
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998 246 AQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI 282 (318)
Q Consensus 246 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 282 (318)
++++.+|..|.||+++|++.|+.+++++|...+.+.-
T Consensus 244 ~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 8888888888888888888888888888888876643
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-47 Score=311.76 Aligned_cols=253 Identities=28% Similarity=0.360 Sum_probs=241.5
Q ss_pred CccccChHHHHHHHHhcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHH
Q psy4998 1 MAAQENHDGVVRYLLSKGGNQTLA-TEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAAL 75 (318)
Q Consensus 1 lA~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ 75 (318)
.|++.|++++|++|++.|++++.. +..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++
T Consensus 11 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 90 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence 388999999999999999999988 77899999999999999999999998764 5668899999999999999999
Q ss_pred HHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccc----------cCCCChHHHHHHHcCcHHHHHHHHHc
Q psy4998 76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ----------AKHNITPLHVACKWGKVAMVELLISK 145 (318)
Q Consensus 76 ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~ 145 (318)
|+++|.+++..+..|.||||+|+..|+.+++++|++.+.+++.. +..|.+||+.|+..|+.+++++|++.
T Consensus 91 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998876 67799999999999999999999998
Q ss_pred -CCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH-cCCCCCcCC
Q psy4998 146 -GANIEAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATT 219 (318)
Q Consensus 146 -~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~ 219 (318)
|.+++..+..|.||||.|+..++ .+++++|+++|++++.++..|.||||+|+..++.+++++|++ .|++++.++
T Consensus 171 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~ 250 (285)
T 1wdy_A 171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250 (285)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC
T ss_pred cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC
Confidence 99999999999999999999999 999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCC
Q psy4998 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253 (318)
Q Consensus 220 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 253 (318)
..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 251 ~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 251 SDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 9999999999999999999999999999998873
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.3e-46 Score=315.80 Aligned_cols=275 Identities=28% Similarity=0.349 Sum_probs=250.8
Q ss_pred ccccChHHHHHHHHhc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998 2 AAQENHDGVVRYLLSK-GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL 76 (318)
Q Consensus 2 A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l 76 (318)
||+.|+.+.|++|+.. +.+++..+..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|
T Consensus 31 A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~L 110 (351)
T 3utm_A 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110 (351)
T ss_dssp HHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHH
Confidence 7899999999999976 889999999999999999999999999999998764 56788999999999999999999
Q ss_pred HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHH---------------------HHcCc
Q psy4998 77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA---------------------CKWGK 135 (318)
Q Consensus 77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a---------------------~~~~~ 135 (318)
+++|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.++++.+ +..+.
T Consensus 111 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (351)
T 3utm_A 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD 190 (351)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998998887664 45566
Q ss_pred HHHHHHHHHcCCCCCccCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC
Q psy4998 136 VAMVELLISKGANIEAKTRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212 (318)
Q Consensus 136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 212 (318)
.+.+..++..+......+..+.||||+|+.. +..+++++|++.|++++.++..|.||||+|+..++.+++++|+++|
T Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 270 (351)
T 3utm_A 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270 (351)
T ss_dssp HHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 6677777766655556777899999999999 5689999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 213 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++| ..+++++|......
T Consensus 271 a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999998 67888888776554
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.7e-48 Score=324.60 Aligned_cols=271 Identities=20% Similarity=0.257 Sum_probs=233.5
Q ss_pred ccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--C-CCChhHHHHHHhCCCHHHHHHHH---
Q psy4998 4 QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK--G-KVKLPALHIAAKKDDCKAAALLL--- 77 (318)
Q Consensus 4 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~--~-~~~~~~l~~A~~~~~~~~~~~ll--- 77 (318)
..|+++++++++.. ..+..|.||||+|+..+ .+++++|+....+ + ..|.||||+|+..|+.+++++|+
T Consensus 75 ~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~ 148 (373)
T 2fo1_E 75 FLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGS-YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 148 (373)
T ss_dssp ------------------------CCCHHHHHHHSS-SCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHH
T ss_pred cccccccccccccc-----CCCCCCccHHHHHhcCC-chHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 34566666665444 35677999999999965 4888888765332 3 67899999999999998888776
Q ss_pred -----hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcC---CCC
Q psy4998 78 -----ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG---ANI 149 (318)
Q Consensus 78 -----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~---~~~ 149 (318)
+.|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.+ .++
T Consensus 149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 228 (373)
T 2fo1_E 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228 (373)
T ss_dssp HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh
Confidence 889999999999999999999999999999999999999999999999999999999999999999987 789
Q ss_pred CccCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCcC--------CCCCCCcHhHHHhhcCCHHHHHHHHHcC-CCCCc
Q psy4998 150 EAKTRDGLTPLHCAARSG---HDNVIDILIEKGAALYS--------KTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNA 217 (318)
Q Consensus 150 ~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~ 217 (318)
+..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++++ ++++.
T Consensus 229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~ 308 (373)
T 2fo1_E 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308 (373)
T ss_dssp SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence 999999999999999998 89999999999999875 5668999999999999999999999885 99999
Q ss_pred CCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 218 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|.....+
T Consensus 309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999987654
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-46 Score=303.83 Aligned_cols=253 Identities=24% Similarity=0.280 Sum_probs=212.3
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhc---------------CCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCC
Q psy4998 24 ATEDGFTPLAVAMQQGHDRVVAVLLEN---------------DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSN 88 (318)
Q Consensus 24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~---------------~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~ 88 (318)
....|.|+||+|+..|+.+.+..++.. ...+..|.||||+|+..|+.+++++|++.|.+++..+.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 445688999999999998777765443 22466788999999999999999999999999999999
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168 (318)
Q Consensus 89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~ 168 (318)
.|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.|.+++..+ .|.|||++|+..|+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~ 169 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH 169 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999887544 59999999999999
Q ss_pred HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248 (318)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 248 (318)
.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|+++
T Consensus 170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 248 (285)
T 3d9h_A 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT 248 (285)
T ss_dssp HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999999999999995 788999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 249 NATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 249 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
+.+|..|+||+++|+ ++.+++++|......
T Consensus 249 ~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a 278 (285)
T 3d9h_A 249 QAKNAEGKRPVELVP--PESPLAQLFLEREGA 278 (285)
T ss_dssp TCCCTTSCCGGGGSC--TTSHHHHHHHHHC--
T ss_pred CCcCCCCCCHHHHhc--CccHHHHHHHHhhcc
Confidence 999999999999999 467999999887443
No 9
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.6e-46 Score=298.19 Aligned_cols=246 Identities=26% Similarity=0.334 Sum_probs=186.1
Q ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCC-CCCCCchHHHHHH
Q psy4998 20 NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAA 98 (318)
Q Consensus 20 ~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~ 98 (318)
+++.+|.+|.||||+|+.+|+.-. ....+...++.+++++|++.|.+++. .+..|.||||+|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~----------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~ 65 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLE----------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA 65 (253)
T ss_dssp ------------------------------------------------------------------CCCTTSCCHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHhcccccc----------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHH
Confidence 577889999999999999885311 11236678899999999999998765 4789999999999
Q ss_pred HcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC-CCCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998 99 HYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIE 177 (318)
Q Consensus 99 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 177 (318)
..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++
T Consensus 66 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (253)
T 1yyh_A 66 RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145 (253)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 888899999999999999999999999999
Q ss_pred cCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCC
Q psy4998 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 257 (318)
.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 146 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 225 (253)
T 1yyh_A 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225 (253)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHhhhccccc
Q psy4998 258 ALNIAQKLGYISVIETLKIVTETT 281 (318)
Q Consensus 258 ~l~~A~~~~~~~~~~~l~~~~~~~ 281 (318)
|+++|++.|+.+++++|.......
T Consensus 226 pl~~A~~~g~~~i~~~l~~~~~~~ 249 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLEHHHH 249 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHhhhc
Confidence 999999999999999998776543
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=290.77 Aligned_cols=246 Identities=23% Similarity=0.309 Sum_probs=216.8
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q psy4998 27 DGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN 102 (318)
Q Consensus 27 ~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 102 (318)
+|+||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 578999999999999999999998654 5568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy4998 103 TNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 182 (318)
Q Consensus 103 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~ 182 (318)
.+++++|++.|++++.. ..|.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp HHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 99999999999988754 45889999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC--------CCCCCC
Q psy4998 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP--------NATTNH 254 (318)
Q Consensus 183 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~--------~~~~~~ 254 (318)
+. +..|.||||+|+..++.+++++|+++|++++.+|..|.||+|+|+..+ +++++|++++..+ +.++..
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~ 237 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCF 237 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTS
T ss_pred CC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHh
Confidence 85 788999999999999999999999999999999999999999999544 5889999987654 367889
Q ss_pred CCCHHHHHHHcCCHHHHHHhhh
Q psy4998 255 GQTALNIAQKLGYISVIETLKI 276 (318)
Q Consensus 255 g~t~l~~A~~~~~~~~~~~l~~ 276 (318)
|.||++.|.+...++.++.+..
T Consensus 238 g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 238 GIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp CTTCGGGGGGSSSCHHHHHHHT
T ss_pred chhccccCcccCCcHHHHHHHh
Confidence 9999999998888777776654
No 11
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.1e-44 Score=286.69 Aligned_cols=230 Identities=31% Similarity=0.457 Sum_probs=196.2
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q psy4998 23 LATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN 102 (318)
Q Consensus 23 ~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 102 (318)
.+|.+|.||||+|+..|+.+++++|++ .+.+.+.+++..+..|.||||+|+..|+
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-------------------------~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 58 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVN-------------------------LFQQGGRELDIYNNLRQTPLHLAVITTL 58 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHH-------------------------HHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHH-------------------------HHHhcCCCCCcccccCCCHHHHHHHcCC
Confidence 456666677777777766666666665 2334677788888888899999999999
Q ss_pred HHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC----CCCccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy4998 103 TNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA----NIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178 (318)
Q Consensus 103 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 178 (318)
.+++++|++.|.+++..+..|.|||++|+..++.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.
T Consensus 59 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 138 (241)
T 1k1a_A 59 PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 999999998888888888888899999999999999999988876 7778888899999999999999999999999
Q ss_pred CCCCcCCC-CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCC
Q psy4998 179 GAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT 257 (318)
Q Consensus 179 ~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 257 (318)
|++++..+ ..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 139 g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 218 (241)
T 1k1a_A 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT 218 (241)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCC
Confidence 99998888 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHhhhc
Q psy4998 258 ALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 258 ~l~~A~~~~~~~~~~~l~~~ 277 (318)
|+++|+..|+.++++.|...
T Consensus 219 pl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 219 PLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp TTTTCSSHHHHHHHTC----
T ss_pred HHHHHHhcCcHHHHhhhccC
Confidence 99999999999998887654
No 12
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.6e-43 Score=293.25 Aligned_cols=255 Identities=28% Similarity=0.351 Sum_probs=236.0
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q psy4998 27 DGFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG 101 (318)
Q Consensus 27 ~~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 101 (318)
+|.|+|+.|+..|++++|++|++.|++ +..|.||||+|+..|+.+++++|+++|++++..+..+.++++.++..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 367899999999999999999999765 234789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHHcCCHHH
Q psy4998 102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK----------TRDGLTPLHCAARSGHDNV 171 (318)
Q Consensus 102 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~ 171 (318)
...++..++..+.+++..+..|.||++.|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999887643 3458899999999999999
Q ss_pred HHHHHH-cCCCCcCCCCCCCcHhHHHhhcCC----HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC-C
Q psy4998 172 IDILIE-KGAALYSKTKAGFTPLHIASHFGQ----LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA-G 245 (318)
Q Consensus 172 ~~~ll~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g 245 (318)
+++|++ .|++++..+..|.|+++.++..+. ..++++|+++|++++.++..|.||||+|+..|+.+++++|++. |
T Consensus 184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~ 263 (337)
T 4g8k_A 184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263 (337)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence 999996 599999999999999998775443 4688999999999999999999999999999999999999985 8
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998 246 AQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT 281 (318)
Q Consensus 246 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 281 (318)
++++.+|..|+||||+|++.|+.++|++|...+.+.
T Consensus 264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299 (337)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999987654
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.6e-44 Score=289.37 Aligned_cols=246 Identities=24% Similarity=0.303 Sum_probs=208.6
Q ss_pred CccccChHHHHHHHHhcC-----------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHH
Q psy4998 1 MAAQENHDGVVRYLLSKG-----------GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAA 65 (318)
Q Consensus 1 lA~~~g~~~~v~~Ll~~g-----------~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~ 65 (318)
+|++.|+.+.+..++..+ ...+..+..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+
T Consensus 21 ~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 100 (285)
T 3d9h_A 21 MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC 100 (285)
T ss_dssp ---------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHH
T ss_pred HHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 589999988877766543 13456788999999999999999999999998654 567899999999
Q ss_pred hCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc
Q psy4998 66 KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145 (318)
Q Consensus 66 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~ 145 (318)
..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.+++++..+ .|.|||++|+..|+.+++++|++.
T Consensus 101 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ 179 (285)
T 3d9h_A 101 LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY 179 (285)
T ss_dssp HTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT
T ss_pred HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999887554 599999999999999999999999
Q ss_pred CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 225 (318)
Q Consensus 146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 225 (318)
|.+++..+..|.|||++|+..|+.+++++|++.|++++. +..|.||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus 180 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 258 (285)
T 3d9h_A 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258 (285)
T ss_dssp TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 999999999999999999999999999999999999984 8889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHhHHHHHHhC-CCCCCC
Q psy4998 226 LHQASQQGRVLIIDLLLGA-GAQPNA 250 (318)
Q Consensus 226 l~~A~~~~~~~~~~~Ll~~-g~~~~~ 250 (318)
|++|+ ++.+++++|+++ |+++..
T Consensus 259 l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 259 VELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp GGGSC--TTSHHHHHHHHHC------
T ss_pred HHHhc--CccHHHHHHHHhhccCCCC
Confidence 99999 457999999998 877654
No 14
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.7e-43 Score=280.69 Aligned_cols=221 Identities=24% Similarity=0.333 Sum_probs=193.4
Q ss_pred CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHc
Q psy4998 54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW 133 (318)
Q Consensus 54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 133 (318)
+..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|.+++..+..|.|||+.|+..
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 33444555555555556666666666777777788888999999999999999999999988888888889999999999
Q ss_pred CcHHHHHHHHHcC-CCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC
Q psy4998 134 GKVAMVELLISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212 (318)
Q Consensus 134 ~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 212 (318)
|+.+++++|++.+ .+++..+..|.|||++|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|
T Consensus 88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 167 (237)
T 3b7b_A 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167 (237)
T ss_dssp TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999987 788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274 (318)
Q Consensus 213 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 274 (318)
++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+.+..+
T Consensus 168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l 229 (237)
T 3b7b_A 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229 (237)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987544444
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.9e-45 Score=310.19 Aligned_cols=259 Identities=21% Similarity=0.203 Sum_probs=230.4
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHH
Q psy4998 19 GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL 94 (318)
Q Consensus 19 ~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l 94 (318)
.+++..|..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+++|.+++. ..|.|||
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L 88 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI 88 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence 45566788899999999999999999999998654 56788999999999999999999999985543 5789999
Q ss_pred HHHHHcCCHHHHHHHHhc----cCCccc-----------------ccCCCChHHHHHHHcC--cHHHHHHHHHcCCCCCc
Q psy4998 95 HIAAHYGNTNIAELLIQK----HANVNN-----------------QAKHNITPLHVACKWG--KVAMVELLISKGANIEA 151 (318)
Q Consensus 95 ~~a~~~~~~~~~~~ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~ 151 (318)
|+|+..|+.+++++|++. +.+++. .+..|.||||+|+..| +.+++++|++.|++++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~ 168 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence 999999999999999998 777666 7778999999999999 99999999999999999
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAA-----LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226 (318)
Q Consensus 152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 226 (318)
.+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 248 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhCCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 227 HQASQQGRVLIIDLLLGAGAQPN------------ATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 227 ~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
|+|+..|+.+++++|+++|++++ ..+..+.+|++.|+..++.+.+..|.....
T Consensus 249 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313 (364)
T ss_dssp HHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence 99999999999999999987642 256678899999999986666666554443
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.9e-44 Score=299.24 Aligned_cols=266 Identities=27% Similarity=0.325 Sum_probs=239.9
Q ss_pred hcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCC
Q psy4998 16 SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEND-----TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH 90 (318)
Q Consensus 16 ~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~-----~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~ 90 (318)
+.+++....+..+.++|+.|+..|+.+.++.++... ..+..+.||||+|+..|+.+++++|+++|.+++..+..|
T Consensus 12 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 91 (351)
T 3utm_A 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91 (351)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence 333444445666789999999999999999999762 235678899999999999999999999999999999999
Q ss_pred chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHH-------
Q psy4998 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA------- 163 (318)
Q Consensus 91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a------- 163 (318)
.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|.+++..+..+.++++.+
T Consensus 92 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~ 171 (351)
T 3utm_A 92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred --------------HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc---CCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998 164 --------------ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF---GQLNMVRYLVENGANVNATTNLGYTPL 226 (318)
Q Consensus 164 --------------~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l 226 (318)
+..+..+.+..++.........+..|.||||+|+.. +..+++++|+++|++++.++..|.|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 251 (351)
T 3utm_A 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHH
Confidence 556666777777766655556778899999999998 668999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998 227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT 281 (318)
Q Consensus 227 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 281 (318)
|+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|...+.+.
T Consensus 252 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 306 (351)
T 3utm_A 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999997764
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-43 Score=288.55 Aligned_cols=246 Identities=24% Similarity=0.255 Sum_probs=194.5
Q ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-------CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchH
Q psy4998 21 QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-------GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP 93 (318)
Q Consensus 21 ~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~-------~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 93 (318)
++..+..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 356889999999999999999999999986543 5678999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhccCCcccc-------------cCCCChHHHHHHHcCc-HHHHHHHHHcCCCCCccCCCCChH
Q psy4998 94 LHIAAHYGNTNIAELLIQKHANVNNQ-------------AKHNITPLHVACKWGK-VAMVELLISKGANIEAKTRDGLTP 159 (318)
Q Consensus 94 l~~a~~~~~~~~~~~ll~~~~~~~~~-------------~~~~~~~l~~a~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~ 159 (318)
||+|+..++.+++++|++.++..... ...+.++++.+...+. ......+...+.+++..+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 99999999999999999988764321 1223445555544433 233444445567788889999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHH
Q psy4998 160 LHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238 (318)
Q Consensus 160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 238 (318)
||+|+..|+.+++++|+++|++++..+.. |.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v 241 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence 99999999999999999999999998854 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998 239 DLLLGAGAQPNATTNHGQTALNIAQKLG 266 (318)
Q Consensus 239 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 266 (318)
++|+++|++++.++..|.||+++|....
T Consensus 242 ~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 242 RLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHTTCCCCCCC--------------
T ss_pred HHHHHcCCCcCcCCCcccccccccCCcc
Confidence 9999999999999999999999998765
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.6e-43 Score=277.14 Aligned_cols=223 Identities=28% Similarity=0.315 Sum_probs=183.7
Q ss_pred ChhHHHHHHhCCCHHHHHHHHhCCCC-CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998 57 KLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135 (318)
Q Consensus 57 ~~~~l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 135 (318)
+.++|+.|+..|+.+.++++++.+.. .+..+..|.||||+|+..|+.+++++|++.+.+++..+..|.|||++|+..|+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence 34556666666666666666554432 45566778888888888888888888888888888777788888888888888
Q ss_pred HHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998 136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215 (318)
Q Consensus 136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 215 (318)
.+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|.+++..+..|.||||+|+..++.+++++|+++|+++
T Consensus 86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 165 (231)
T 3aji_A 86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165 (231)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence 88888888888888888888888888888888888888888888888888888889999999989999999999999999
Q ss_pred CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 216 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
+.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|++.++.+++++|.....
T Consensus 166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 8888889999999999999999999999999998888899999999988888888888877654
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.8e-42 Score=273.67 Aligned_cols=225 Identities=26% Similarity=0.347 Sum_probs=213.1
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHH
Q psy4998 19 GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL 94 (318)
Q Consensus 19 ~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l 94 (318)
.+++..+..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+++|.+++..+..|.|||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 46778899999999999999999999999998654 55678999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcc-CCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHH
Q psy4998 95 HIAAHYGNTNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173 (318)
Q Consensus 95 ~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 173 (318)
|+|+..|+.+++++|++.+ .+++..+..|.|||+.|+..++.+++++|++.|.+++.++..|.||||+|+..|+.++++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999998 788888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243 (318)
Q Consensus 174 ~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 243 (318)
+|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+.+..|++
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999866655544
No 20
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.9e-43 Score=280.32 Aligned_cols=220 Identities=26% Similarity=0.353 Sum_probs=207.1
Q ss_pred CChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998 56 VKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135 (318)
Q Consensus 56 ~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 135 (318)
.|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998 136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215 (318)
Q Consensus 136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 215 (318)
.+++++|++.|.+++. +..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 9999999999999875 445899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 216 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
+. +..|.||||+|+..++.+++++|+++|+|++.+|..|+||+++|+..+ +++++|.....
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~ 221 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREG 221 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-C
T ss_pred CC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccC
Confidence 96 788999999999999999999999999999999999999999999654 58888877644
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.4e-43 Score=275.36 Aligned_cols=222 Identities=26% Similarity=0.319 Sum_probs=213.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q psy4998 27 DGFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG 101 (318)
Q Consensus 27 ~~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 101 (318)
.+.+||+.|+..|+.++++++++.+. .+..+.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 46799999999999999999998754 3677899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy4998 102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181 (318)
Q Consensus 102 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~ 181 (318)
+.+++++|++.+.+++.++..|.|||+.|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 164 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998 182 LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248 (318)
Q Consensus 182 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 248 (318)
++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++
T Consensus 165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 22
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.5e-42 Score=292.61 Aligned_cols=227 Identities=23% Similarity=0.301 Sum_probs=214.8
Q ss_pred CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHH
Q psy4998 52 TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131 (318)
Q Consensus 52 ~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~ 131 (318)
..+..+.|+||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.+++++. ..|.|||++|+
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~ 92 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAV 92 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHH
Confidence 3466788999999999999999999999999999999999999999999999999999999996553 47899999999
Q ss_pred HcCcHHHHHHHHHc----CCCCCc-----------------cCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCcCCCCC
Q psy4998 132 KWGKVAMVELLISK----GANIEA-----------------KTRDGLTPLHCAARSG--HDNVIDILIEKGAALYSKTKA 188 (318)
Q Consensus 132 ~~~~~~~~~~L~~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~ 188 (318)
..|+.+++++|++. +.+++. .+..|.||||+|+..| +.+++++|+++|++++..+..
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 99999999999998 777766 7888999999999999 999999999999999999999
Q ss_pred CCcHhHHHhhcCCHHHHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy4998 189 GFTPLHIASHFGQLNMVRYLVENGAN-----VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263 (318)
Q Consensus 189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 263 (318)
|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHhhhcccc
Q psy4998 264 KLGYISVIETLKIVTET 280 (318)
Q Consensus 264 ~~~~~~~~~~l~~~~~~ 280 (318)
..|+.+++++|......
T Consensus 253 ~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 253 RAAMVLLTKELLQKTDV 269 (364)
T ss_dssp HTCCHHHHHHHHHHSCH
T ss_pred HhChHHHHHHHHHcCCc
Confidence 99999999999988654
No 23
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-43 Score=297.71 Aligned_cols=244 Identities=19% Similarity=0.269 Sum_probs=221.7
Q ss_pred ccccChHHHHHHHHhcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHH--------hcCC----CCCCChhHHHHHHhCC
Q psy4998 2 AAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLL--------ENDT----KGKVKLPALHIAAKKD 68 (318)
Q Consensus 2 A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~A~~~g~~~~~~~ll--------~~~~----~~~~~~~~l~~A~~~~ 68 (318)
|+. |+.+++++|+. .+++..+ ..|.||||+|+..|+.+++++|+ +.+. .+..+.||||+|+..|
T Consensus 101 Aa~-~~~~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g 177 (373)
T 2fo1_E 101 EAA-GSYAITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR 177 (373)
T ss_dssp HHH-SSSCCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT
T ss_pred Hhc-CCchHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcC
Confidence 555 44578888865 4666777 68999999999999999988887 4443 3667899999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcc---CCcccccCCCChHHHHHHHcC---cHHHHHHH
Q psy4998 69 DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH---ANVNNQAKHNITPLHVACKWG---KVAMVELL 142 (318)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~L 142 (318)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.|||++|+..+ +.+++++|
T Consensus 178 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L 257 (373)
T 2fo1_E 178 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257 (373)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999988 788889999999999999998 89999999
Q ss_pred HHcCCCCCc--------cCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCC
Q psy4998 143 ISKGANIEA--------KTRDGLTPLHCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213 (318)
Q Consensus 143 ~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~ 213 (318)
++.|.+++. .+..|.||||+|+..|+.+++++|++.+ ++++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337 (373)
T ss_dssp HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999998875 5668999999999999999999999886 9999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248 (318)
Q Consensus 214 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 248 (318)
+++.+|..|.|||++|+..|+.+++++|+++|++.
T Consensus 338 d~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 99999999999999999999999999999998763
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-43 Score=281.99 Aligned_cols=219 Identities=29% Similarity=0.411 Sum_probs=163.4
Q ss_pred hHHHHHHhCCCHHHHHHHHhCCCC--------CCCCCCCCchHHHHHHHcCCH-HHHHHHHhccCCcccccCCCChHHHH
Q psy4998 59 PALHIAAKKDDCKAAALLLENDHS--------PDVKSNSHFTPLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHV 129 (318)
Q Consensus 59 ~~l~~A~~~~~~~~~~~ll~~~~~--------~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~l~~ 129 (318)
++|+.|+..|+.+++++|++.+.+ ++..+..+.+||+.|+..+.. .++++|++.|++++..+..|.||||+
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~ 92 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV 92 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 444444444444444444444332 344566788999999987765 48899999999999999999999999
Q ss_pred HHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHH
Q psy4998 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV 209 (318)
Q Consensus 130 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 209 (318)
|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus 93 A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll 172 (269)
T 4b93_B 93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172 (269)
T ss_dssp HHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 210 ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 210 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
++|++++..+..|.||||+|+..|+.+++++|+++|+|++.+|..|+|||++|++++ +++++|+....
T Consensus 173 ~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~--~i~~lL~~l~~ 240 (269)
T 4b93_B 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELLQVVPS 240 (269)
T ss_dssp HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC--HHHHHTTC---
T ss_pred HCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC--cHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998755 56777765544
No 25
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-42 Score=281.61 Aligned_cols=255 Identities=18% Similarity=0.193 Sum_probs=217.2
Q ss_pred ChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CCCChhHHHHHHhCCCHHHHHHHHhCCCCC
Q psy4998 6 NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK--GKVKLPALHIAAKKDDCKAAALLLENDHSP 83 (318)
Q Consensus 6 g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~--~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~ 83 (318)
+..+++++|.+. +++..|..|.||||+|+..|+.+++++|++.+.. ...|.||||+|+..|+.+++++|+++|+++
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 88 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD 88 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 444555555554 5788999999999999999999999999998654 335789999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCC-ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHH
Q psy4998 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHC 162 (318)
Q Consensus 84 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~ 162 (318)
+..+..|.||||+|+..|+.+++++|+++|++++..+..| .|||+.|+..|+.+++++|++.|.+.... ..|.||||+
T Consensus 89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~ 167 (285)
T 3kea_A 89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHI 167 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHH
T ss_pred CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHH
Confidence 9999999999999999999999999999999999998888 79999999999999999999998776322 278899999
Q ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCcH-hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998 163 AARSGHDNVIDILIEKGAALYSKTKAGFTP-LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241 (318)
Q Consensus 163 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 241 (318)
|+..|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|+++|++++..+. .|+..|+.+++++|
T Consensus 168 A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~L 240 (285)
T 3kea_A 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMI 240 (285)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHH
T ss_pred HHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHH
Confidence 999999999999999999999999999997 9999999999999999999999998773 56778999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy4998 242 LGAGAQPNATTNHGQTALNIAQKLGYISVIE 272 (318)
Q Consensus 242 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 272 (318)
+++|+++...+... .+..+......++++
T Consensus 241 l~~g~~~~~~~~~~--~~~~~~~~~~~~ii~ 269 (285)
T 3kea_A 241 IEKHVEYKSDSYTK--DLDIVKNNKLDEIIS 269 (285)
T ss_dssp HHHHHHHTTCTTTT--TCHHHHTCSHHHHHH
T ss_pred HHcCCCCCCccccc--hHHHHhhhhHHHHHh
Confidence 99998887654433 344444444444443
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=268.53 Aligned_cols=228 Identities=27% Similarity=0.326 Sum_probs=200.6
Q ss_pred CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccC-CCChHHHHHHH
Q psy4998 54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK-HNITPLHVACK 132 (318)
Q Consensus 54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~a~~ 132 (318)
+..+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.+.+++.... .|.|||+.|+.
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence 45566788888888888888888888888888888899999999999999999999999888775544 48899999999
Q ss_pred cCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC-HHHHHHHHHc
Q psy4998 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ-LNMVRYLVEN 211 (318)
Q Consensus 133 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~ 211 (318)
.|+.+++++|++.|.+++..+..+.+||+.|+..++.+++++|+++|++++..+..|.||+|.|+..+. .+++++|++.
T Consensus 86 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~ 165 (240)
T 3eu9_A 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165 (240)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence 999999999999999998888899999999999999999999999999999999999999999996655 8899999999
Q ss_pred CCCCCcCCC-CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998 212 GANVNATTN-LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT 281 (318)
Q Consensus 212 g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 281 (318)
|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.||+++|++.|+.+++++|.......
T Consensus 166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 999998887 8999999999999999999999999999999999999999999999999999998876653
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.9e-42 Score=268.95 Aligned_cols=218 Identities=28% Similarity=0.376 Sum_probs=191.7
Q ss_pred ChhHHHHHHhCCCHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcc--CCccc-ccCCCChHHHHHHH
Q psy4998 57 KLPALHIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKH--ANVNN-QAKHNITPLHVACK 132 (318)
Q Consensus 57 ~~~~l~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~-~~~~~~~~l~~a~~ 132 (318)
|.||||.|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.+++++|++.+ .+++. .+..|.|||+.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 45777777777777777777777766443 7788899999999999999999999998 55555 66789999999999
Q ss_pred cCcHHHHHHHHHcC--CCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH
Q psy4998 133 WGKVAMVELLISKG--ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210 (318)
Q Consensus 133 ~~~~~~~~~L~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 210 (318)
.|+.+++++|++.| .+++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999988 8888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCcCCCCCCCHHHHHHHcCCHhHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998 211 NG-ANVNATTNLGYTPLHQASQQGRVLIIDLLL-GAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 211 ~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 277 (318)
+| ++++.++..|.||||+|+..|+.+++++|+ ++|++++.+|..|.||+++|.+. +++++|..+
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99 999999999999999999999999999999 88999999999999999999754 666676543
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-41 Score=266.69 Aligned_cols=213 Identities=26% Similarity=0.325 Sum_probs=191.0
Q ss_pred CCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy4998 68 DDCKAAALLLENDHSPDVK-SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146 (318)
Q Consensus 68 ~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~ 146 (318)
|+.+++++|+++|.+++.. +..|.||||+|+..|+.+++++|++.+.+++..+..|.|||++|+..|+.+++++|++.+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6778888888888887765 788999999999999999999999999999888888999999999999999999999987
Q ss_pred C-CCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998 147 A-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 225 (318)
Q Consensus 147 ~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 225 (318)
. +++..+..+.|||++|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 6 778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 226 LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 226 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
||+|+..|+.+++++|+++|++++.+|..|.||+++|++.++.+++++|..++..
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999887664
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-42 Score=281.49 Aligned_cols=264 Identities=25% Similarity=0.321 Sum_probs=219.5
Q ss_pred ccccChHHHHHHHHhcCCCCCc---------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCC
Q psy4998 2 AAQENHDGVVRYLLSKGGNQTL---------ATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKD 68 (318)
Q Consensus 2 A~~~g~~~~v~~Ll~~g~~~~~---------~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~ 68 (318)
|++.|+.+.++.++.....+.. .+..|.|||+.||..|+.+++++|++.+.. +..+.||||+|+..|
T Consensus 5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 84 (299)
T 1s70_B 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84 (299)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 6778888989988887665332 123466899999999999999999998754 566789999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc-CC
Q psy4998 69 DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK-GA 147 (318)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~ 147 (318)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++++.. +.
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~ 164 (299)
T 1s70_B 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988865 55
Q ss_pred CCCccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226 (318)
Q Consensus 148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 226 (318)
+++.....+.++++ ..+..++..+ ......+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 165 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL 236 (299)
T 1s70_B 165 DIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236 (299)
T ss_dssp CHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred CchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 44332222222222 2334444444 44455677899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998 227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274 (318)
Q Consensus 227 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 274 (318)
|+|+..|+.+++++|+++|++++.+|..|.||+++|.+.. .+.++.+
T Consensus 237 ~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~-~~~l~~l 283 (299)
T 1s70_B 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI-LGYLEEL 283 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG-GHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999997643 3333333
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=264.62 Aligned_cols=229 Identities=25% Similarity=0.295 Sum_probs=210.4
Q ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCC-CCchHHH
Q psy4998 21 QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSN-SHFTPLH 95 (318)
Q Consensus 21 ~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~ 95 (318)
++..+..|.|+|+.|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|++++.+++.... .|.|||+
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 445678889999999999999999999998654 55678999999999999999999999998776554 4899999
Q ss_pred HHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC-HHHHHH
Q psy4998 96 IAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH-DNVIDI 174 (318)
Q Consensus 96 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ 174 (318)
+|+..++.+++++|++.|++++..+..|.+||+.|+..|+.+++++|++.|.+++..+..|.|||+.|+..+. .+++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997666 899999
Q ss_pred HHHcCCCCcCCCC-CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998 175 LIEKGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249 (318)
Q Consensus 175 ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 249 (318)
|++.+.+++..+. .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|.+..
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 9999999998887 89999999999999999999999999999999999999999999999999999999987754
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=278.00 Aligned_cols=225 Identities=25% Similarity=0.336 Sum_probs=180.9
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcCCC------------CCCChhHHHHHHhCCCH-HHHHHHHhCCCCCCCCCCCC
Q psy4998 24 ATEDGFTPLAVAMQQGHDRVVAVLLENDTK------------GKVKLPALHIAAKKDDC-KAAALLLENDHSPDVKSNSH 90 (318)
Q Consensus 24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~------------~~~~~~~l~~A~~~~~~-~~~~~ll~~~~~~~~~~~~~ 90 (318)
.|..+.++|+.||..|++++|++|++.+.. +..+.+||+.|+..++. .+++.|++.|++++..+..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 455677899999999999999999987553 33467899999988776 47899999999999999999
Q ss_pred chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170 (318)
Q Consensus 91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 170 (318)
.||||+|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC-HhHHHHHHhCCCCC
Q psy4998 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR-VLIIDLLLGAGAQP 248 (318)
Q Consensus 171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~g~~~ 248 (318)
++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++++. .+++++|...+..+
T Consensus 167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 9999999999999999999999999999999999999999999999999999999999998775 35555555555544
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=9.5e-41 Score=262.43 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=185.2
Q ss_pred ChHHHHHHHHhcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCC
Q psy4998 6 NHDGVVRYLLSKGGNQTLA-TEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPD 84 (318)
Q Consensus 6 g~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~ 84 (318)
|+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|++ +|.+++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------------~g~~~~ 52 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----------------------------ASADAN 52 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-----------------------------TTCCTT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-----------------------------cCCCCC
Confidence 6788888888888887664 6778888777777766666665554 455566
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy4998 85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163 (318)
Q Consensus 85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a 163 (318)
..+..|.||||+|+..++.+++++|++.+. +++..+..|.|||+.|+..++.+++++|++.|.+++..+..|.||||+|
T Consensus 53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 132 (223)
T 2f8y_A 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132 (223)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHH
Confidence 677888889999999999999999988876 7777788888999999999999999999999999988898999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243 (318)
Q Consensus 164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 243 (318)
+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|++
T Consensus 133 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy4998 244 AGAQPN 249 (318)
Q Consensus 244 ~g~~~~ 249 (318)
+|+...
T Consensus 213 ~g~~~~ 218 (223)
T 2f8y_A 213 YNLVRS 218 (223)
T ss_dssp TTCSSC
T ss_pred cCCCcc
Confidence 998754
No 33
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.3e-40 Score=265.10 Aligned_cols=213 Identities=24% Similarity=0.315 Sum_probs=170.3
Q ss_pred HHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy4998 35 AMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL 109 (318)
Q Consensus 35 A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 109 (318)
+...++.+++++|++.+.. +..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|
T Consensus 30 ~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 109 (253)
T 1yyh_A 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109 (253)
T ss_dssp ----------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3344444444444444322 23444555555555666666666677777888888999999999999999999999
Q ss_pred HhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Q psy4998 110 IQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA 188 (318)
Q Consensus 110 l~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~ 188 (318)
++.+. +++..+..|.|||++|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus 110 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 189 (253)
T 1yyh_A 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189 (253)
T ss_dssp HHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence 99887 78888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247 (318)
Q Consensus 189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 247 (318)
|.||||+|+..++.+++++|+++|++++.++..|.||+++|++.|+.+++++|......
T Consensus 190 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999887443
No 34
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=8.6e-43 Score=289.06 Aligned_cols=251 Identities=16% Similarity=0.122 Sum_probs=209.9
Q ss_pred cccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC---------------------ChhHH
Q psy4998 3 AQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV---------------------KLPAL 61 (318)
Q Consensus 3 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~---------------------~~~~l 61 (318)
......++|++|+++|++++..+..|.++++ |+.+++++|++++..+.. ..+..
T Consensus 27 ~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1sw6_A 27 IITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 101 (327)
T ss_dssp EEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred hhhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence 3445567899999999999999999999987 999999999998644222 01223
Q ss_pred HHHHhCCCHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc---HH
Q psy4998 62 HIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK---VA 137 (318)
Q Consensus 62 ~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~ 137 (318)
|.|+..+..++++.|++.|.+++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+ .+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~ 181 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence 667777778899999999999999 89999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHcC-CCCCccCCCCChHHHHHHH----cCCHHHHHHHHHc--------------------CCCCcCCCCCCCcH
Q psy4998 138 MVELLISKG-ANIEAKTRDGLTPLHCAAR----SGHDNVIDILIEK--------------------GAALYSKTKAGFTP 192 (318)
Q Consensus 138 ~~~~L~~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~--------------------~~~~~~~~~~~~t~ 192 (318)
+++.|++.+ .+++..+..|.||||+|+. .|+.+++++|++. |++++..+..|.||
T Consensus 182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261 (327)
T ss_dssp CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence 888888875 6788999999999999999 8999999999987 88999999999999
Q ss_pred hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266 (318)
Q Consensus 193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 266 (318)
||.|+. +++|+++ +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|++.|
T Consensus 262 L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 262 ILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred hHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 999986 8999998 68889999999999999999999999999999999999999999999998764
No 35
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.8e-40 Score=260.62 Aligned_cols=214 Identities=26% Similarity=0.324 Sum_probs=198.4
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhHHHHHHhCCCHHHHHHHHhCC--CCCCC-CCCCCchHHHHHHH
Q psy4998 28 GFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPALHIAAKKDDCKAAALLLEND--HSPDV-KSNSHFTPLHIAAH 99 (318)
Q Consensus 28 ~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~l~~A~~~~~~~~~~~ll~~~--~~~~~-~~~~~~~~l~~a~~ 99 (318)
|.||||+|+..|+.+++++|++.+. .+..+.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6799999999999999999999754 4667899999999999999999999999 44554 67889999999999
Q ss_pred cCCHHHHHHHHhcc--CCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998 100 YGNTNIAELLIQKH--ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177 (318)
Q Consensus 100 ~~~~~~~~~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 177 (318)
.|+.+++++|++.+ .+++..+..|.|||+.|+..++.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 8888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998 178 KG-AALYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244 (318)
Q Consensus 178 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 244 (318)
.| .+++..+..|.||||+|+..++.+++++|+ ++|++++.++..|.||+++|+.. +++++|+++
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99 999999999999999999999999999999 88999999999999999999754 677777764
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.3e-41 Score=273.61 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=212.1
Q ss_pred CHHHHHHHHhcC--CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcc
Q psy4998 40 HDRVVAVLLEND--TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117 (318)
Q Consensus 40 ~~~~~~~ll~~~--~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~ 117 (318)
..++.++|.+.+ ..+..|.||||+|+..|+.+++++|+++|.+++.. +|.||||+|+..|+.+++++|+++|++++
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 89 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS 89 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 445666665543 33677899999999999999999999999998877 48999999999999999999999999999
Q ss_pred cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHH
Q psy4998 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG-LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196 (318)
Q Consensus 118 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a 196 (318)
..+..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|+++|.+.... ..|.||||+|
T Consensus 90 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A 168 (285)
T 3kea_A 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHIT 168 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHH
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHH
Confidence 999999999999999999999999999999999999999 89999999999999999999999876333 2799999999
Q ss_pred hhcCCHHHHHHHHHcCCCCCcCCCCCCCH-HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998 197 SHFGQLNMVRYLVENGANVNATTNLGYTP-LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275 (318)
Q Consensus 197 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 275 (318)
+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++..+. .|+..|+.+++++|.
T Consensus 169 ~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 169 IKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMII 241 (285)
T ss_dssp HHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHH
Confidence 99999999999999999999999999998 9999999999999999999999998873 567799999999999
Q ss_pred hccccce
Q psy4998 276 IVTETTI 282 (318)
Q Consensus 276 ~~~~~~~ 282 (318)
..+...-
T Consensus 242 ~~g~~~~ 248 (285)
T 3kea_A 242 EKHVEYK 248 (285)
T ss_dssp HHHHHHT
T ss_pred HcCCCCC
Confidence 8876543
No 37
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.5e-40 Score=263.16 Aligned_cols=217 Identities=26% Similarity=0.321 Sum_probs=171.5
Q ss_pred CccccChHHHHHHHHh----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHH
Q psy4998 1 MAAQENHDGVVRYLLS----KGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALL 76 (318)
Q Consensus 1 lA~~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~l 76 (318)
+||+.|+.++|++|++ .|.+++..+..|.||||+|+..|+.+++++|++.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------------- 68 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-------------------------- 68 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--------------------------
Confidence 4899999999999997 7899999999999999999888777777766654
Q ss_pred HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccC----CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc
Q psy4998 77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152 (318)
Q Consensus 77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~ 152 (318)
|.+++..+..|.||||+|+..++.+++++|++.+. +++..+..|.+||+.|+..|+.+++++|++.|.+++..
T Consensus 69 ---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 145 (241)
T 1k1a_A 69 ---GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145 (241)
T ss_dssp ---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred ---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 44455566677777777777777777777777766 66666677778888888888888888888888777777
Q ss_pred C-CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998 153 T-RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231 (318)
Q Consensus 153 ~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 231 (318)
+ ..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.
T Consensus 146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~ 225 (241)
T 1k1a_A 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225 (241)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHh
Confidence 6 677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHhHHHHHHhCCC
Q psy4998 232 QGRVLIIDLLLGAGA 246 (318)
Q Consensus 232 ~~~~~~~~~Ll~~g~ 246 (318)
.|+.++++.|+++++
T Consensus 226 ~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 226 RRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHTC------
T ss_pred cCcHHHHhhhccCCC
Confidence 888888888877654
No 38
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.2e-39 Score=261.49 Aligned_cols=230 Identities=25% Similarity=0.270 Sum_probs=192.5
Q ss_pred CCCCCChhHHHHHHhCCCHHHHHHHHhCCCC---CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHH
Q psy4998 52 TKGKVKLPALHIAAKKDDCKAAALLLENDHS---PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLH 128 (318)
Q Consensus 52 ~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~ 128 (318)
..+..|.||||+|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 4567889999999999999999999999887 7788899999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCccC-------------CCCChHHHHHHHcCC-HHHHHHHHHcCCCCcCCCCCCCcHhH
Q psy4998 129 VACKWGKVAMVELLISKGANIEAKT-------------RDGLTPLHCAARSGH-DNVIDILIEKGAALYSKTKAGFTPLH 194 (318)
Q Consensus 129 ~a~~~~~~~~~~~L~~~~~~~~~~~-------------~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~t~l~ 194 (318)
+|+..|+.+++++|++.+.+..... ..+.++++.+...+. ......+...+.+++..+..|.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 9999999999999999876643221 123344554444433 23333444456778888999999999
Q ss_pred HHhhcCCHHHHHHHHHcCCCCCcCCCC-CCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy4998 195 IASHFGQLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIET 273 (318)
Q Consensus 195 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 273 (318)
+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 243 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence 999999999999999999999999864 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccc
Q psy4998 274 LKIVTETT 281 (318)
Q Consensus 274 l~~~~~~~ 281 (318)
|...+...
T Consensus 244 Ll~~ga~~ 251 (282)
T 1oy3_D 244 LRAHGAPE 251 (282)
T ss_dssp HHHTTCCC
T ss_pred HHHcCCCc
Confidence 99998874
No 39
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=245.97 Aligned_cols=208 Identities=27% Similarity=0.327 Sum_probs=163.6
Q ss_pred CChhHHHHHHhCCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCc-----ccccCCCChHHHH
Q psy4998 56 VKLPALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV-----NNQAKHNITPLHV 129 (318)
Q Consensus 56 ~~~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~l~~ 129 (318)
.|.||||.|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 467888888888888888888887 8888888888888888888888888888888887765 4445567778888
Q ss_pred HHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHH
Q psy4998 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV 209 (318)
Q Consensus 130 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 209 (318)
|+..|+.+++++|++.|.+++..+.... .....+..+..|.||||+|+..++.+++++|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 141 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--------------------eeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 7777777777777777777765544211 01123345567888999999989999999999
Q ss_pred HcCCCCCcCCCCCCCHHHHHHHcCCHhHH----HHHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 210 ENGANVNATTNLGYTPLHQASQQGRVLII----DLLLGAGAQP------NATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 210 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
++|++++.+|..|.||||+|+..++.+++ ++|+++|+++ +.+|..|.||+++|++.|+.+++++|.+.+.
T Consensus 142 ~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 142 EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 99999988888899999999998888877 8888888887 4788889999999999999999998888776
Q ss_pred ccee
Q psy4998 280 TTIV 283 (318)
Q Consensus 280 ~~~~ 283 (318)
....
T Consensus 222 ~~~~ 225 (232)
T 2rfa_A 222 HIAA 225 (232)
T ss_dssp HC--
T ss_pred cchh
Confidence 5443
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=245.92 Aligned_cols=205 Identities=26% Similarity=0.310 Sum_probs=178.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhc-CC----CCCCChhHHHHHHhCCCHHHHHHHHhCCCCC-----CCCCCCCchHHHH
Q psy4998 27 DGFTPLAVAMQQGHDRVVAVLLEN-DT----KGKVKLPALHIAAKKDDCKAAALLLENDHSP-----DVKSNSHFTPLHI 96 (318)
Q Consensus 27 ~~~t~l~~A~~~g~~~~~~~ll~~-~~----~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~l~~ 96 (318)
.|.||||.|+..|+.+++++|++. +. .+..+.||||+|+..|+.+++++|++.|.++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 488999999999999999999997 43 3667899999999999999999999999876 6667789999999
Q ss_pred HHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHH
Q psy4998 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176 (318)
Q Consensus 97 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 176 (318)
|+..|+.+++++|++.|++++..+.... .....+..+..|.||||+|+..|+.+++++|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 141 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--------------------eeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887654321 11234556778999999999999999999999
Q ss_pred HcCCCCcCCCCCCCcHhHHHhhcCCHHHH----HHHHHcCCCC------CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCC
Q psy4998 177 EKGAALYSKTKAGFTPLHIASHFGQLNMV----RYLVENGANV------NATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246 (318)
Q Consensus 177 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~ 246 (318)
++|++++.++..|.||||+|+..++.+++ ++|+++|+++ +.++..|.||||+|+..|+.+++++|+++|.
T Consensus 142 ~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 142 EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999888 9999999988 5788899999999999999999999999987
Q ss_pred CCCCC
Q psy4998 247 QPNAT 251 (318)
Q Consensus 247 ~~~~~ 251 (318)
+....
T Consensus 222 ~~~~~ 226 (232)
T 2rfa_A 222 HIAAA 226 (232)
T ss_dssp HC---
T ss_pred cchhh
Confidence 76543
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-39 Score=258.47 Aligned_cols=217 Identities=24% Similarity=0.332 Sum_probs=148.2
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH
Q psy4998 24 ATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103 (318)
Q Consensus 24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 103 (318)
.|.+|.||||+|+..|+.+++++|++.+.. .+.+++..+..|.||||+|+..|+.
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------------------------~~~~~~~~~~~g~t~L~~A~~~~~~ 58 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKG-------------------------DLAFLNFQNNLQQTPLHLAVITNQP 58 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC------------------------------CCCCCCCCTTCCCHHHHHHHTTCH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhc-------------------------cHHHhhccCCCCCCHHHHHHHcCCH
Confidence 445566666666666666555555543221 1234566666677777777777777
Q ss_pred HHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIE 177 (318)
Q Consensus 104 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 177 (318)
+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++
T Consensus 59 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 138 (236)
T 1ikn_D 59 EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138 (236)
T ss_dssp HHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 777777777777777666777777777777777777777776654 34556667777777777777777777777
Q ss_pred cCCCCcCCCC-CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC--CCCCC
Q psy4998 178 KGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN--ATTNH 254 (318)
Q Consensus 178 ~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~ 254 (318)
+|++++..+. .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++. .++..
T Consensus 139 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~ 218 (236)
T 1ikn_D 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218 (236)
T ss_dssp HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccc
Confidence 7777777776 77788888887778888888887788877777777888888887788888888888877664 66677
Q ss_pred CCCHHHHHHHc
Q psy4998 255 GQTALNIAQKL 265 (318)
Q Consensus 255 g~t~l~~A~~~ 265 (318)
|.||.+.+...
T Consensus 219 ~~~~~~~~~~~ 229 (236)
T 1ikn_D 219 DEESYDTESEF 229 (236)
T ss_dssp TTTCCCCC---
T ss_pred hHHHHhhhccc
Confidence 77776655443
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-36 Score=234.78 Aligned_cols=189 Identities=24% Similarity=0.386 Sum_probs=133.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcC
Q psy4998 89 SHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167 (318)
Q Consensus 89 ~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~ 167 (318)
.+.+||+.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||+|+..+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34566666666666666666666555 56666666666666666666666666666666666666666677777777777
Q ss_pred CHHHHHHHH-HcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCC-----HhHHHH
Q psy4998 168 HDNVIDILI-EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQASQQGR-----VLIIDL 240 (318)
Q Consensus 168 ~~~~~~~ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~ 240 (318)
+.+++++|+ ..+.+++..+..|.||||.|+..++.+++++|+++| ++++..+..|.||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 777777777 344566666777777777777777777777777776 7777777777777777777776 777777
Q ss_pred HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 241 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 277 (318)
|+++|++++.+|..|.||+++|+..|+.+++++|..+
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 7777777777777777777777777777777777654
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.5e-39 Score=253.42 Aligned_cols=198 Identities=28% Similarity=0.322 Sum_probs=182.3
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhccC----CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHH
Q psy4998 85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160 (318)
Q Consensus 85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l 160 (318)
..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 457789999999999999999999988765 6788888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCC------CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcC
Q psy4998 161 HCAARSGHDNVIDILIEKGAA------LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN-LGYTPLHQASQQG 233 (318)
Q Consensus 161 ~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~ 233 (318)
|+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 999999999999999999875 466778899999999999999999999999999999998 9999999999999
Q ss_pred CHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998 234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI 282 (318)
Q Consensus 234 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 282 (318)
+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|...+....
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 9999999999999999999999999999999999999999999988754
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-36 Score=234.64 Aligned_cols=191 Identities=27% Similarity=0.371 Sum_probs=178.0
Q ss_pred CCChhHHHHHHhCCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHc
Q psy4998 55 KVKLPALHIAAKKDDCKAAALLLENDH-SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW 133 (318)
Q Consensus 55 ~~~~~~l~~A~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 133 (318)
..+.|+|+.|+..|+.+.+++|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 356688888888888888888888776 7888899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-HcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCcHhHHHhhcCC-----HHHHH
Q psy4998 134 GKVAMVELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQ-----LNMVR 206 (318)
Q Consensus 134 ~~~~~~~~L~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~~~~ 206 (318)
|+.+++++|+ ..+.+++..+..|.||||+|+..++.+++++|+++| .+++.++..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 556788999999999999999999999999999999 8999999999999999999988 99999
Q ss_pred HHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245 (318)
Q Consensus 207 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 245 (318)
+|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999987
No 45
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-38 Score=257.70 Aligned_cols=235 Identities=24% Similarity=0.301 Sum_probs=200.9
Q ss_pred CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL 76 (318)
Q Consensus 1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l 76 (318)
+||..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|
T Consensus 46 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~L 125 (299)
T 1s70_B 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125 (299)
T ss_dssp HHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 38899999999999999999999999999999999999999999999998765 55688999999999999999999
Q ss_pred HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCC
Q psy4998 77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTR 154 (318)
Q Consensus 77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~ 154 (318)
+++|.+++..+..|.|||++|+..++.+++++++.. +.+++.....+.+++ ...+..++.. .......+.
T Consensus 126 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWLNSGHINDVRHAK 197 (299)
T ss_dssp HHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHHHHTCCCCCCCTT
T ss_pred HhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH--------HHHHHHHHhccCcchhhhcC
Confidence 999999999999999999999999999999988864 444333222222222 2233344444 444455677
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Q psy4998 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234 (318)
Q Consensus 155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 234 (318)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|++. .
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~ 276 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-I 276 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-G
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-H
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999764 4
Q ss_pred HhHHHHHHhC
Q psy4998 235 VLIIDLLLGA 244 (318)
Q Consensus 235 ~~~~~~Ll~~ 244 (318)
.+.++.+++.
T Consensus 277 ~~~l~~l~~~ 286 (299)
T 1s70_B 277 LGYLEELQKK 286 (299)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.4e-37 Score=251.74 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=112.7
Q ss_pred CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCC----CCCCCCchH
Q psy4998 18 GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPD----VKSNSHFTP 93 (318)
Q Consensus 18 g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~ 93 (318)
|+..+..+..|.||||.|+..|+.++++.|++. +.+.+.+++ ..+..|.||
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------------~~~~~~~~~~~~~~~~~~g~tp 57 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPF-------------------------LQRSKKRLTDSEFKDPETGKTC 57 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHH-------------------------HHHSCCCTTSGGGSCTTTCCCH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHH-------------------------HhhcccccCCcccccCcCCCCH
Confidence 444455666677777777777777766666652 122333333 235566677
Q ss_pred HHHHHHc---CCHHHHHHHHhccCCcc-----------cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCC-----
Q psy4998 94 LHIAAHY---GNTNIAELLIQKHANVN-----------NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTR----- 154 (318)
Q Consensus 94 l~~a~~~---~~~~~~~~ll~~~~~~~-----------~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~----- 154 (318)
||+|+.. |+.+++++|++.|++.. ..+..|.||||+|+..|+.+++++|++.|++++..+.
T Consensus 58 L~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~ 137 (273)
T 2pnn_A 58 LLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK 137 (273)
T ss_dssp HHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS
T ss_pred HHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc
Confidence 7777765 66777777776654321 1233455555555555555555555555555555444
Q ss_pred ---------CCChHHHHHHHcCCHHHHHHHHH---cCCCCcCCCCCCCcHhHHHhhcCC---------HHHHHHHHHcCC
Q psy4998 155 ---------DGLTPLHCAARSGHDNVIDILIE---KGAALYSKTKAGFTPLHIASHFGQ---------LNMVRYLVENGA 213 (318)
Q Consensus 155 ---------~~~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~ 213 (318)
.|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++ .+++++|+++|+
T Consensus 138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 217 (273)
T 2pnn_A 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217 (273)
T ss_dssp SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence 45555555555555555555555 555555555555555555555554 455555555555
Q ss_pred CCC-------cCCCCCCCHHHHHHHcCCHhHHHHHHhCCC-CCCCCCCCCC
Q psy4998 214 NVN-------ATTNLGYTPLHQASQQGRVLIIDLLLGAGA-QPNATTNHGQ 256 (318)
Q Consensus 214 ~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~ 256 (318)
+++ .++..|.||||+|+..|+.+++++|+++|+ |+......+.
T Consensus 218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~ 268 (273)
T 2pnn_A 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAH 268 (273)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----------
T ss_pred hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhh
Confidence 554 255555566666666666666666666555 4544444333
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=5.2e-36 Score=223.48 Aligned_cols=158 Identities=41% Similarity=0.589 Sum_probs=106.2
Q ss_pred HHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHH
Q psy4998 93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172 (318)
Q Consensus 93 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 172 (318)
+|+.|+..|+.+++++|++.|++++.++..|.||+++|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v 86 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 86 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666777777777777777
Q ss_pred HHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCC
Q psy4998 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250 (318)
Q Consensus 173 ~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 250 (318)
++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus 87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777776653
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.3e-37 Score=246.11 Aligned_cols=205 Identities=24% Similarity=0.252 Sum_probs=144.4
Q ss_pred CChhHHHHHHhCCCHH----HHHHHHhCCCCCCC----CCCCCchHHHHHHHc---CCHHHHHHHHhccCCcccccCCCC
Q psy4998 56 VKLPALHIAAKKDDCK----AAALLLENDHSPDV----KSNSHFTPLHIAAHY---GNTNIAELLIQKHANVNNQAKHNI 124 (318)
Q Consensus 56 ~~~~~l~~A~~~~~~~----~~~~ll~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~ 124 (318)
+|.|+||.|+..|+.+ ++++|++.|.+++. .+..|.||||+|+.. |+.+++++|++.|++++..+.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~--- 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP--- 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence 3567777777777775 45555666777766 667777777777777 777777777777665542220
Q ss_pred hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-------------CCc
Q psy4998 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-------------GFT 191 (318)
Q Consensus 125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------------~~t 191 (318)
++. ......+..|.||||+|+..|+.+++++|+++|++++..+.. |.|
T Consensus 78 -----------------~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t 138 (256)
T 2etb_A 78 -----------------LVN--AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138 (256)
T ss_dssp -----------------GGG--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred -----------------hcc--cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence 000 001112234555555555555555555555555555544443 888
Q ss_pred HhHHHhhcCCHHHHHHHHH---cCCCCCcCCCCCCCHHHHHHH--cCCHh-------HHHHHHhCCCCC-------CCCC
Q psy4998 192 PLHIASHFGQLNMVRYLVE---NGANVNATTNLGYTPLHQASQ--QGRVL-------IIDLLLGAGAQP-------NATT 252 (318)
Q Consensus 192 ~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~ 252 (318)
|||+|+..|+.+++++|++ +|++++.++..|.||||+|+. .++.+ ++++|+++|+++ +.+|
T Consensus 139 pL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d 218 (256)
T 2etb_A 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218 (256)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC
Confidence 9999999899999999998 888998888889999999988 77777 889999998888 8888
Q ss_pred CCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998 253 NHGQTALNIAQKLGYISVIETLKIVTETTI 282 (318)
Q Consensus 253 ~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 282 (318)
..|.||+++|+..|+.+++++|...+....
T Consensus 219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 219 HQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 889999999999999999999888766543
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2e-35 Score=220.37 Aligned_cols=156 Identities=38% Similarity=0.580 Sum_probs=150.5
Q ss_pred hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204 (318)
Q Consensus 125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 204 (318)
+.|+.|+..|+.+++++|++.|++++.++..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
+++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.|+.+++++|.+.+..
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988764
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.4e-36 Score=243.64 Aligned_cols=202 Identities=22% Similarity=0.209 Sum_probs=164.1
Q ss_pred CCCCHHHHHHHcCCHH----HHHHHHhcCC--------CCCCChhHHHHHHhC---CCHHHHHHHHhCCCCCCCCC----
Q psy4998 27 DGFTPLAVAMQQGHDR----VVAVLLENDT--------KGKVKLPALHIAAKK---DDCKAAALLLENDHSPDVKS---- 87 (318)
Q Consensus 27 ~~~t~l~~A~~~g~~~----~~~~ll~~~~--------~~~~~~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~---- 87 (318)
.|.||||.|+..|+.+ ++++|++.+. .+..|.||||+|+.. |+.+++++|++.|.+++..+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3789999999999997 5666666664 356789999999999 99999999999988766433
Q ss_pred -------CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHH
Q psy4998 88 -------NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL 160 (318)
Q Consensus 88 -------~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l 160 (318)
..|.||||+|+..|+.+++++|+++|++++..+..+.. ..+....+..|.|||
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~g~tpL 140 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF--------------------QKHQGTCFYFGELPL 140 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG--------------------SCCSSSCCCSCSSHH
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc--------------------cccccccccCCCCHH
Confidence 56778888888888888888888888777766654321 122233344588888
Q ss_pred HHHHHcCCHHHHHHHHH---cCCCCcCCCCCCCcHhHHHhh--cCCHH-------HHHHHHHcCCCC-------CcCCCC
Q psy4998 161 HCAARSGHDNVIDILIE---KGAALYSKTKAGFTPLHIASH--FGQLN-------MVRYLVENGANV-------NATTNL 221 (318)
Q Consensus 161 ~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~ 221 (318)
|+|+..|+.+++++|++ +|++++.++..|.||||+|+. .++.+ ++++|+++|+++ +.++..
T Consensus 141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~ 220 (256)
T 2etb_A 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ 220 (256)
T ss_dssp HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT
T ss_pred HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC
Confidence 88888888888888888 888888888888999998888 77777 999999999998 888999
Q ss_pred CCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998 222 GYTPLHQASQQGRVLIIDLLLGAGAQP 248 (318)
Q Consensus 222 g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 248 (318)
|.||||+|+..|+.+++++|+++|.++
T Consensus 221 g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 221 GLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999999999999987654
No 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-37 Score=256.16 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=180.4
Q ss_pred cccChHHHHHHHHhcCCCCCcC-----------------CCCCCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhH
Q psy4998 3 AQENHDGVVRYLLSKGGNQTLA-----------------TEDGFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPA 60 (318)
Q Consensus 3 ~~~g~~~~v~~Ll~~g~~~~~~-----------------~~~~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~ 60 (318)
+..|+.++|++|+++|++++.. .....+.+|.|+..+..+++++|++.+. .+..|.||
T Consensus 55 ~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~Tp 134 (327)
T 1sw6_A 55 NDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP 134 (327)
T ss_dssp CCHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCH
T ss_pred ccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcH
Confidence 4568999999999999886651 1112233578888888899999998765 46678999
Q ss_pred HHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC---HHHHHHHHhcc-CCcccccCCCChHHHHHHH----
Q psy4998 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN---TNIAELLIQKH-ANVNNQAKHNITPLHVACK---- 132 (318)
Q Consensus 61 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~---- 132 (318)
||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+ .++++.|++.+ .+++..+..|.||||+|+.
T Consensus 135 Lh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~ 214 (327)
T 1sw6_A 135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 214 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc
Confidence 999999999999999999999999999999999999999998 67888888876 6788899999999999999
Q ss_pred cCcHHHHHHHHHc--------------------CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcH
Q psy4998 133 WGKVAMVELLISK--------------------GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192 (318)
Q Consensus 133 ~~~~~~~~~L~~~--------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~ 192 (318)
.|+.+++++|++. |++++..+..|.|||+.|+. +++|+++ +++.++..|+||
T Consensus 215 ~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~Tp 286 (327)
T 1sw6_A 215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTC 286 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCH
T ss_pred cccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCH
Confidence 8999999999987 88899999999999999986 8899988 578899999999
Q ss_pred hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Q psy4998 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233 (318)
Q Consensus 193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 233 (318)
||+|+..|+.+++++|+++|++++.++..|.||||+|++.|
T Consensus 287 Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999999999999999999999999999998764
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4e-36 Score=243.27 Aligned_cols=206 Identities=21% Similarity=0.246 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc----cCCcc----cccCCCChHHHHHHHc---CcHHHHHHHHHcCCC
Q psy4998 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK----HANVN----NQAKHNITPLHVACKW---GKVAMVELLISKGAN 148 (318)
Q Consensus 80 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~----~~~~~----~~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~ 148 (318)
++..+..+..|.||||.|+..|+.++++.|++. +.+++ ..+..|.||||+|+.. |+.+++++|++.|.+
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 344566788899999999999999988888874 44443 3467899999999986 999999999998754
Q ss_pred C-----------CccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCC--------------CCCcHhHHHhhcCCHH
Q psy4998 149 I-----------EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK--------------AGFTPLHIASHFGQLN 203 (318)
Q Consensus 149 ~-----------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~ 203 (318)
. ...+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 2 22566899999999999999999999999999998886 7999999999999999
Q ss_pred HHHHHHH---cCCCCCcCCCCCCCHHHHHHHcCC---------HhHHHHHHhCCCCCC-------CCCCCCCCHHHHHHH
Q psy4998 204 MVRYLVE---NGANVNATTNLGYTPLHQASQQGR---------VLIIDLLLGAGAQPN-------ATTNHGQTALNIAQK 264 (318)
Q Consensus 204 ~~~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~A~~ 264 (318)
++++|++ +|++++.++..|.||||+|+..|+ .+++++|+++|++++ .+|..|.|||++|+.
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence 9999999 999999999999999999999988 899999999999997 489999999999999
Q ss_pred cCCHHHHHHhhhccccceecc
Q psy4998 265 LGYISVIETLKIVTETTIVTT 285 (318)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~ 285 (318)
.|+.+++++|...+.......
T Consensus 243 ~g~~~iv~~Ll~~ga~dp~~~ 263 (273)
T 2pnn_A 243 SGKIGVLAYILQREIHEPECR 263 (273)
T ss_dssp TTCHHHHHHHHHHHTC-----
T ss_pred hChHHHHHHHHHCCCCCchhh
Confidence 999999999999988543333
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=5.5e-35 Score=234.89 Aligned_cols=206 Identities=22% Similarity=0.247 Sum_probs=142.2
Q ss_pred CCChhHHHHHHhCCCHHHHHH----HHhCCCCCCCCC----CCCchHHHHHH---HcCCHHHHHHHHhccCCcccccCCC
Q psy4998 55 KVKLPALHIAAKKDDCKAAAL----LLENDHSPDVKS----NSHFTPLHIAA---HYGNTNIAELLIQKHANVNNQAKHN 123 (318)
Q Consensus 55 ~~~~~~l~~A~~~~~~~~~~~----ll~~~~~~~~~~----~~~~~~l~~a~---~~~~~~~~~~ll~~~~~~~~~~~~~ 123 (318)
.++.++|+.|+..|+.+.++. +++.+.+++..+ ..|.||||+|+ ..|+.+++++|++.+.+.....
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--- 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--- 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence 345666666666666664333 333666655443 44666666666 4566666666666654322100
Q ss_pred ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC--------------CCC
Q psy4998 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT--------------KAG 189 (318)
Q Consensus 124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------~~~ 189 (318)
.+ ........+..|.||||+|+..|+.+++++|+++|++++..+ ..|
T Consensus 80 -----------------~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g 140 (260)
T 3jxi_A 80 -----------------EF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFG 140 (260)
T ss_dssp -----------------HH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSC
T ss_pred -----------------hh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCC
Confidence 00 012233344466677777777777777777777777766666 578
Q ss_pred CcHhHHHhhcCCHHHHHHHHH---cCCCCCcCCCCCCCHHHHHHHcCC---------HhHHHHHHhCCCCC-------CC
Q psy4998 190 FTPLHIASHFGQLNMVRYLVE---NGANVNATTNLGYTPLHQASQQGR---------VLIIDLLLGAGAQP-------NA 250 (318)
Q Consensus 190 ~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~g~~~-------~~ 250 (318)
.||||+|+..|+.+++++|++ +|++++.++..|.||||+|+..++ .+++++|+++|+++ +.
T Consensus 141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 220 (260)
T 3jxi_A 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220 (260)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhc
Confidence 888888888888888888888 888888888888888888887776 68888888888887 56
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998 251 TTNHGQTALNIAQKLGYISVIETLKIVTETTI 282 (318)
Q Consensus 251 ~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 282 (318)
+|..|.|||++|++.|+.+++++|.+.+....
T Consensus 221 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 88888888888888888888888887766543
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=7.3e-35 Score=234.21 Aligned_cols=206 Identities=22% Similarity=0.208 Sum_probs=151.1
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh----cCCC--------CCCChhHHHHHH---hCCCHHHHHHHHhCCCCC------
Q psy4998 25 TEDGFTPLAVAMQQGHDRVVAVLLE----NDTK--------GKVKLPALHIAA---KKDDCKAAALLLENDHSP------ 83 (318)
Q Consensus 25 ~~~~~t~l~~A~~~g~~~~~~~ll~----~~~~--------~~~~~~~l~~A~---~~~~~~~~~~ll~~~~~~------ 83 (318)
+..+.++||.|+..|+.+.++.|++ .+.. +..|.||||+|+ ..|+.+++++|++.|.++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4567899999999999996555554 5443 245889999999 779999999999987542
Q ss_pred -----CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCh
Q psy4998 84 -----DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 158 (318)
Q Consensus 84 -----~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 158 (318)
+..+..|.||||+|+..|+.+++++|+++|++++..+..+.. ...+....+..|.|
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~~~~~~g~t 142 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------QPKDEGGYFYFGEL 142 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-------------------SSSCCCCSCCSCSS
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-------------------CcccccccccCCCC
Confidence 222335556666666666666666666665555544421100 00111122256888
Q ss_pred HHHHHHHcCCHHHHHHHHH---cCCCCcCCCCCCCcHhHHHhhcCC---------HHHHHHHHHcCCCC-------CcCC
Q psy4998 159 PLHCAARSGHDNVIDILIE---KGAALYSKTKAGFTPLHIASHFGQ---------LNMVRYLVENGANV-------NATT 219 (318)
Q Consensus 159 ~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~ 219 (318)
|||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++ .+++++|+++|+++ +..+
T Consensus 143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d 222 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence 8888888888888888888 788888888888888888887766 68889999998888 6688
Q ss_pred CCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249 (318)
Q Consensus 220 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 249 (318)
..|.||||+|+..|+.+++++|+++|.++.
T Consensus 223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 223 NDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 889999999999999999999999887654
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=229.75 Aligned_cols=188 Identities=23% Similarity=0.290 Sum_probs=174.5
Q ss_pred hHHHHHHHcCCHHHHHHHHhccCC--cccccCCCChHHHHHHHcCcHHHHHHHHHcCC-CCCccCCCCChHHHHHH----
Q psy4998 92 TPLHIAAHYGNTNIAELLIQKHAN--VNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAA---- 164 (318)
Q Consensus 92 ~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~a~---- 164 (318)
+++|.|+..++.+.++.+++.+.+ ++..+..|.||||+|+..|+.+++++|++.|. +++..+..|.|||++|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 567888899999999999887665 77788899999999999999999999999997 89999999999999999
Q ss_pred -HcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998 165 -RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243 (318)
Q Consensus 165 -~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 243 (318)
..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 6688999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 244 -AGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 244 -~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
.|++++.+|..|.||+++|+..|+.+++++|.....
T Consensus 238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 899999999999999999999999999999987643
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=3.7e-33 Score=213.89 Aligned_cols=162 Identities=35% Similarity=0.424 Sum_probs=136.5
Q ss_pred ccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHH
Q psy4998 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196 (318)
Q Consensus 117 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a 196 (318)
+.++..|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 44566777888888888888888888887777777777888888888888888888888888888888888888888888
Q ss_pred hhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhh
Q psy4998 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKI 276 (318)
Q Consensus 197 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 276 (318)
+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|..
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888876
Q ss_pred cc
Q psy4998 277 VT 278 (318)
Q Consensus 277 ~~ 278 (318)
..
T Consensus 189 ~~ 190 (192)
T 2rfm_A 189 VR 190 (192)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=231.52 Aligned_cols=187 Identities=18% Similarity=0.221 Sum_probs=176.5
Q ss_pred hHHHHHHhCCCHHHHHHHHhCCCC--CCCCCCCCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHH----
Q psy4998 59 PALHIAAKKDDCKAAALLLENDHS--PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVAC---- 131 (318)
Q Consensus 59 ~~l~~A~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~---- 131 (318)
+++|.|+..++.+.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||++.|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 567788888999999998877655 78889999999999999999999999999998 99999999999999999
Q ss_pred -HcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH
Q psy4998 132 -KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210 (318)
Q Consensus 132 -~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 210 (318)
..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 6789999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998 211 -NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245 (318)
Q Consensus 211 -~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 245 (318)
.|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 89999999999999999999999999999999873
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=3.4e-33 Score=210.23 Aligned_cols=168 Identities=21% Similarity=0.295 Sum_probs=105.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhccCC-cccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCH
Q psy4998 91 FTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169 (318)
Q Consensus 91 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~ 169 (318)
.+|||.|+..|+.+++++|++.+.. ++..+..|.||||.|+..|+.+++++|++.|.+++..+..+.||||+|+..++.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 3566666666666666666666554 455555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998 170 NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249 (318)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 249 (318)
+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCH
Q psy4998 250 ATTNHGQTA 258 (318)
Q Consensus 250 ~~~~~g~t~ 258 (318)
.++..|.||
T Consensus 163 ~~~~~~~~p 171 (172)
T 3v30_A 163 QSNLVPADP 171 (172)
T ss_dssp CC-------
T ss_pred cccCCCCCC
Confidence 666655554
No 59
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=2.4e-32 Score=204.94 Aligned_cols=156 Identities=37% Similarity=0.583 Sum_probs=128.2
Q ss_pred CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201 (318)
Q Consensus 122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~ 201 (318)
.+.++++.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 92 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 44567777888888888888887777777777778888888888888888888888888887788888888888888888
Q ss_pred HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 277 (318)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|.++
T Consensus 93 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888764
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.2e-32 Score=210.97 Aligned_cols=162 Identities=28% Similarity=0.411 Sum_probs=152.4
Q ss_pred CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy4998 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163 (318)
Q Consensus 84 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a 163 (318)
+..+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 56788899999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243 (318)
Q Consensus 164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 243 (318)
+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy4998 244 AG 245 (318)
Q Consensus 244 ~g 245 (318)
+|
T Consensus 189 ~~ 190 (192)
T 2rfm_A 189 VR 190 (192)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.5e-32 Score=204.52 Aligned_cols=159 Identities=28% Similarity=0.389 Sum_probs=129.0
Q ss_pred CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201 (318)
Q Consensus 122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~ 201 (318)
.|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 35677777777777777777777777777777777788888888888888888888887777777888888888888888
Q ss_pred HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|......
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888766543
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.3e-32 Score=203.69 Aligned_cols=156 Identities=31% Similarity=0.410 Sum_probs=91.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170 (318)
Q Consensus 91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 170 (318)
.+||+.|+..|+.+++++|++.+.+++..+..|.|||++|+. |+.+++++|++.|.+++.++..|.||||+|+..++.+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 84 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD 84 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 355555555555555555555555555555555555555555 5555555555555555555555555555555555556
Q ss_pred HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247 (318)
Q Consensus 171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 247 (318)
++++|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|+|
T Consensus 85 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 85 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 66666655555555555566666666666666666666666555 355555566666666666666666666666553
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=6.3e-32 Score=202.60 Aligned_cols=159 Identities=33% Similarity=0.538 Sum_probs=136.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHc
Q psy4998 87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS 166 (318)
Q Consensus 87 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~ 166 (318)
...+.++|+.|+..|+.+++++|++.|.+++..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 34456788888888888888888888888887777888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245 (318)
Q Consensus 167 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 245 (318)
++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|
T Consensus 91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 8888889888888888888888999999999999999999999999999999999999999999999999999998876
No 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=7.9e-32 Score=198.71 Aligned_cols=151 Identities=32% Similarity=0.459 Sum_probs=135.1
Q ss_pred ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203 (318)
Q Consensus 124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~ 203 (318)
.++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 367888888888888888888877665 5677888888888888888888888888888888888999999999999999
Q ss_pred HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275 (318)
Q Consensus 204 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 275 (318)
++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~ 153 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=4.8e-32 Score=202.93 Aligned_cols=160 Identities=23% Similarity=0.329 Sum_probs=142.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168 (318)
Q Consensus 89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~ 168 (318)
.|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|.+++..+..+.||||.|+..++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 36688888888888888888888888888888888888888888888888888888888888888888899999999999
Q ss_pred HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248 (318)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 248 (318)
.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|++++.++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999886554
No 66
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=100.00 E-value=1.3e-35 Score=248.22 Aligned_cols=248 Identities=15% Similarity=0.095 Sum_probs=163.1
Q ss_pred cChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-------CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998 5 ENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-------GKVKLPALHIAAKKDDCKAAALLL 77 (318)
Q Consensus 5 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~-------~~~~~~~l~~A~~~~~~~~~~~ll 77 (318)
.++.++++++++.|.+ +.||||+|+..|+.+++++|++.+.. +..+.||||+|+..|+.+++++|+
T Consensus 76 ~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll 148 (376)
T 2aja_A 76 RNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148 (376)
T ss_dssp TTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH
Confidence 4667777788777765 34899999999999999999888652 234567999999999999999999
Q ss_pred hCCCCC---CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccc--ccCCCChHHHHHH-HcCcHHHHHHHHHcCCCCCc
Q psy4998 78 ENDHSP---DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN--QAKHNITPLHVAC-KWGKVAMVELLISKGANIEA 151 (318)
Q Consensus 78 ~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~L~~~~~~~~~ 151 (318)
++|+++ +..+.+ .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+++++|++.|.
T Consensus 149 ~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---- 223 (376)
T 2aja_A 149 ELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---- 223 (376)
T ss_dssp HSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH----
T ss_pred hCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC----
Confidence 988642 222222 7899999999999999999998888766 6677888999999 8999999999988653
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcC---------------------------CHHH
Q psy4998 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG---------------------------QLNM 204 (318)
Q Consensus 152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~---------------------------~~~~ 204 (318)
.+.|||+.|+..|+.+++++|+++|++++..+. +++.|+..| ..+.
T Consensus 224 ---~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~ 296 (376)
T 2aja_A 224 ---MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 296 (376)
T ss_dssp ---HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHH
T ss_pred ---ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHH
Confidence 267889999999998899999888766543221 222222222 3445
Q ss_pred HHHHHHcCC-----CCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998 205 VRYLVENGA-----NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274 (318)
Q Consensus 205 ~~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 274 (318)
+++|++.+. +.......+.|||++|+..|+.+++++|++.| ..++..++|++.+|...|..++++.-
T Consensus 297 ~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~ 368 (376)
T 2aja_A 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVA 368 (376)
T ss_dssp HHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-------------------
T ss_pred HHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHH
Confidence 555554321 01111223567888888888888888888764 55567778888888888887776654
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=9e-32 Score=200.44 Aligned_cols=157 Identities=25% Similarity=0.363 Sum_probs=150.5
Q ss_pred CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201 (318)
Q Consensus 122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~ 201 (318)
...+||+.|+..|+.+++++|++.|.+++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45689999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ-PNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..|.||+++|+..|+.+++++|...+.
T Consensus 83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999998 59999999999999999999999999988764
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=5.9e-32 Score=203.44 Aligned_cols=168 Identities=22% Similarity=0.344 Sum_probs=138.8
Q ss_pred hhHHHHHHhCCCHHHHHHHHhCCCC-CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcH
Q psy4998 58 LPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKV 136 (318)
Q Consensus 58 ~~~l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 136 (318)
.++|+.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 4677777777778888887777766 667778888889998888888888988888888888888888899999888899
Q ss_pred HHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCC
Q psy4998 137 AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216 (318)
Q Consensus 137 ~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 216 (318)
+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 99999998888888888888899999999999999999999998888888889999999999999999999999888888
Q ss_pred cCCCCCCCH
Q psy4998 217 ATTNLGYTP 225 (318)
Q Consensus 217 ~~~~~g~t~ 225 (318)
..+..|.||
T Consensus 163 ~~~~~~~~p 171 (172)
T 3v30_A 163 QSNLVPADP 171 (172)
T ss_dssp CC-------
T ss_pred cccCCCCCC
Confidence 777777766
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=2.3e-31 Score=201.45 Aligned_cols=163 Identities=31% Similarity=0.479 Sum_probs=96.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998 90 HFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168 (318)
Q Consensus 90 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~ 168 (318)
+.++|+.|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 34555555555555555555555 33455555555555555555555555555555555555555556666666666666
Q ss_pred HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248 (318)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 248 (318)
.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++
T Consensus 85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~ 164 (179)
T 3f6q_A 85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164 (179)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CCCC
Q psy4998 249 NATT 252 (318)
Q Consensus 249 ~~~~ 252 (318)
+..+
T Consensus 165 ~~~~ 168 (179)
T 3f6q_A 165 NRIP 168 (179)
T ss_dssp SCBC
T ss_pred ccCC
Confidence 5443
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.1e-34 Score=226.26 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=146.8
Q ss_pred HHHHhCCCCCCCCC---CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCC
Q psy4998 74 ALLLENDHSPDVKS---NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150 (318)
Q Consensus 74 ~~ll~~~~~~~~~~---~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~ 150 (318)
+.|++++.+++..+ ..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n 81 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 45666666655433 345667788888888888888888888887777788888888888888888888888888888
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHH--hhcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIA--SHFGQLNMVRYLVENGANVNATTNLGYTPLH 227 (318)
Q Consensus 151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~ 227 (318)
..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+| +..++.+++++|+++|++++..+..|.||++
T Consensus 82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161 (229)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence 888888888888888888888888888888887775 5788888888 7888888888888888888888777777777
Q ss_pred HHHHcCCHhHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998 228 QASQQGRVLIIDLLLGAGAQ--PNATTNHGQTALNIAQKLGYISVIETL 274 (318)
Q Consensus 228 ~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l 274 (318)
.+...+.. ++|++.|++ ++.+|..|.|||++|+..|+.++|+..
T Consensus 162 ~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 162 DYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 54444332 566777877 566788888888888888888877653
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.2e-30 Score=192.27 Aligned_cols=150 Identities=27% Similarity=0.456 Sum_probs=129.4
Q ss_pred chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170 (318)
Q Consensus 91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 170 (318)
.++|+.|+..|+.+++++|++.+.+++ .+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 467888888888888888888877665 4667888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241 (318)
Q Consensus 171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 241 (318)
++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888888888888899999999999999999999999999999999999999999999999999886
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-34 Score=226.67 Aligned_cols=194 Identities=22% Similarity=0.178 Sum_probs=170.7
Q ss_pred HHHHhcCCC-------CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcc
Q psy4998 45 AVLLENDTK-------GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117 (318)
Q Consensus 45 ~~ll~~~~~-------~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~ 117 (318)
+.|++.+.. +..+.|+|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n 81 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 455655433 3456789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHH--HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhH
Q psy4998 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCA--ARSGHDNVIDILIEKGAALYSKTKAGFTPLH 194 (318)
Q Consensus 118 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~ 194 (318)
..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||++| +..++.+++++|++.|++++..+..+.+|++
T Consensus 82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161 (229)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence 999999999999999999999999999999999886 6999999999 9999999999999999999999999999998
Q ss_pred HHhhcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998 195 IASHFGQLNMVRYLVENGAN--VNATTNLGYTPLHQASQQGRVLIIDLL 241 (318)
Q Consensus 195 ~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~L 241 (318)
.++..... ++|++.|++ ++.+|..|.||||+|+..|+.++++.+
T Consensus 162 ~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 162 DYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 66655433 577888988 678899999999999999999998764
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=3.3e-31 Score=197.98 Aligned_cols=157 Identities=32% Similarity=0.474 Sum_probs=118.8
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc
Q psy4998 121 KHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF 199 (318)
Q Consensus 121 ~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~ 199 (318)
..+.++|+.|+..|+.+++++|++. +.+++..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 3455677777777777777777663 445555666677777777777777777777777777777777788888888888
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT 278 (318)
Q Consensus 200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 278 (318)
++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+ ++.+++++|...+
T Consensus 86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 88888888888888888888788888888888888888888888888888888888888888766 7778888877654
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=2.1e-30 Score=191.70 Aligned_cols=152 Identities=27% Similarity=0.371 Sum_probs=132.2
Q ss_pred ChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCH
Q psy4998 124 ITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202 (318)
Q Consensus 124 ~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~ 202 (318)
.++|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 4778888888888888888877 34777788888888888 888888888888888888888888899999999999999
Q ss_pred HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 203 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 277 (318)
+++++|+++|++++.++..|.||||+|+..|+.+++++|+++ ++++.+|..|.||+++|+..|+.+++++|...
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999998888899999999999999999999988 88888999999999999999999999988754
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=5.9e-31 Score=196.58 Aligned_cols=159 Identities=33% Similarity=0.497 Sum_probs=115.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998 87 SNSHFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR 165 (318)
Q Consensus 87 ~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~ 165 (318)
+..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 34456677777777777777777663 33455555566677777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998 166 SGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245 (318)
Q Consensus 166 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 245 (318)
.++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|.. ++.+++++|+++|
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 777777777777777777777777788888888888888888888888887777778888877665 7778888887776
Q ss_pred C
Q psy4998 246 A 246 (318)
Q Consensus 246 ~ 246 (318)
+
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 4
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=3.6e-30 Score=194.94 Aligned_cols=165 Identities=27% Similarity=0.367 Sum_probs=149.6
Q ss_pred ChhHHHHHHhCCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998 57 KLPALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135 (318)
Q Consensus 57 ~~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 135 (318)
+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 45678888888888888888877 55678888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998 136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215 (318)
Q Consensus 136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 215 (318)
.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|+++
T Consensus 85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~ 164 (179)
T 3f6q_A 85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164 (179)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q psy4998 216 NATTNL 221 (318)
Q Consensus 216 ~~~~~~ 221 (318)
+..+..
T Consensus 165 ~~~~~~ 170 (179)
T 3f6q_A 165 NRIPYK 170 (179)
T ss_dssp SCBCCC
T ss_pred ccCCcc
Confidence 877654
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=6.8e-30 Score=189.00 Aligned_cols=153 Identities=27% Similarity=0.430 Sum_probs=127.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998 90 HFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168 (318)
Q Consensus 90 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~ 168 (318)
+.+||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|.+++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 34678888888888888888777 23667777778888888 77788888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244 (318)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 244 (318)
.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ ++++.++..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888888888888888888899988888888999988888 88888888899999999999999999988874
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=5.9e-34 Score=238.20 Aligned_cols=256 Identities=16% Similarity=0.152 Sum_probs=192.4
Q ss_pred ChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHH-cCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCC-
Q psy4998 6 NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQ-QGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSP- 83 (318)
Q Consensus 6 g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~-~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~- 83 (318)
+..+.+..+++...+.+.. .+.+++++|.. .++.++++++++.+.. +.||||.|+..|+.+++++|+++|...
T Consensus 45 ~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~---~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~ 119 (376)
T 2aja_A 45 SYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIK---SEVICFVAAITGCSSALDTLCLLLTSDE 119 (376)
T ss_dssp CHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCC---HHHHHHHHHHHCCHHHHHHHTTC--CCS
T ss_pred cHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCC---cCCHHHHHHHcCCHHHHHHHHHcCCcHH
Confidence 3445555555443332211 23457777776 5889999999988754 459999999999999999999998732
Q ss_pred --CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCc---ccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCc--cCCCC
Q psy4998 84 --DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV---NNQAKHNITPLHVACKWGKVAMVELLISKGANIEA--KTRDG 156 (318)
Q Consensus 84 --~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~--~~~~~ 156 (318)
...+..+.||||+|+..|+.+++++|+++|+++ +..... .||||+|+..|+.+++++|+++|++++. .+..|
T Consensus 120 ~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g 198 (376)
T 2aja_A 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198 (376)
T ss_dssp SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCC
Confidence 234456789999999999999999999999752 222222 8999999999999999999999998876 77889
Q ss_pred ChHHHHHH-HcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCC-------CCC----C
Q psy4998 157 LTPLHCAA-RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN-------LGY----T 224 (318)
Q Consensus 157 ~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-------~g~----t 224 (318)
.||||+|+ ..|+.+++++|++.|. .|.||++.|+..|+.+++++|+++|++++..+. .|. +
T Consensus 199 ~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 199 YYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271 (376)
T ss_dssp HHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred CCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhc
Confidence 99999999 9999999999998663 388999999999999999999999887654322 111 1
Q ss_pred H---------HHHHHHcC---CHhHHHHHHhC---------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998 225 P---------LHQASQQG---RVLIIDLLLGA---------GAQPNATTNHGQTALNIAQKLGYISVIETLKIVT 278 (318)
Q Consensus 225 ~---------l~~A~~~~---~~~~~~~Ll~~---------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 278 (318)
+ +...+..+ ..+.+++|++. |+++ ..+.||+++|++.|+.+++++|.+..
T Consensus 272 ~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~ 342 (376)
T 2aja_A 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP 342 (376)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred HHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh
Confidence 1 11122222 34566777763 4444 34568999999999999999998754
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=1.3e-31 Score=212.16 Aligned_cols=179 Identities=21% Similarity=0.267 Sum_probs=131.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcC
Q psy4998 88 NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167 (318)
Q Consensus 88 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~ 167 (318)
..|.|||+.|+..++.+.++.|+++|.+++.. ..+.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 45788999999999999999999998888754 56789999999999999999999999899989999999999999999
Q ss_pred CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCC-CHHHHH--HHcCCHhHHHHHHhC
Q psy4998 168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY-TPLHQA--SQQGRVLIIDLLLGA 244 (318)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~Ll~~ 244 (318)
+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|. ||+|+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988776 999999 788999999999999
Q ss_pred CCCCCCC---------CCCCCCHHHHHHHcCC
Q psy4998 245 GAQPNAT---------TNHGQTALNIAQKLGY 267 (318)
Q Consensus 245 g~~~~~~---------~~~g~t~l~~A~~~~~ 267 (318)
|++++.. +..+.++.+++.+.|.
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9988765 6678888888877775
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=2.7e-30 Score=204.67 Aligned_cols=206 Identities=18% Similarity=0.234 Sum_probs=141.4
Q ss_pred CCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC
Q psy4998 55 KVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG 134 (318)
Q Consensus 55 ~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 134 (318)
..|.|||+.|+..++.+.++.|+++|.+++.. ..+.||||.|+..|+.+++++|++.+++++..+..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 34678888888888888888888888887754 66789999999999999999999999999888889999999999999
Q ss_pred cHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC-cHhHHH--hhcCCHHHHHHHHHc
Q psy4998 135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF-TPLHIA--SHFGQLNMVRYLVEN 211 (318)
Q Consensus 135 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~Ll~~ 211 (318)
+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998887776 999999 778889999999999
Q ss_pred CCCCCcC---------CCCCCCHHHHHHHcCCHhHHHHHHhCCCCC------CCCCCCCCCHHHHHH
Q psy4998 212 GANVNAT---------TNLGYTPLHQASQQGRVLIIDLLLGAGAQP------NATTNHGQTALNIAQ 263 (318)
Q Consensus 212 g~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~A~ 263 (318)
|++++.. +..+.+++++++..|. +++.|.+.+.+. ...+..|.+|.+|..
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence 8887765 5557888888887776 344444444331 233455556665543
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=1.8e-28 Score=176.92 Aligned_cols=133 Identities=22% Similarity=0.304 Sum_probs=117.7
Q ss_pred CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCC-CCC
Q psy4998 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNL-GYT 224 (318)
Q Consensus 146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t 224 (318)
+.+++..+..+.||||.|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 35677788888899999999999999999999998888888889999999999 9999999999999999988888 899
Q ss_pred HHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 225 PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 225 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
|||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|...+.
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999998877653
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=6.1e-29 Score=183.71 Aligned_cols=143 Identities=24% Similarity=0.296 Sum_probs=109.4
Q ss_pred ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc-HhHHHh
Q psy4998 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT-PLHIAS 197 (318)
Q Consensus 119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t-~l~~a~ 197 (318)
.+..|.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 4456778888888888888888888888888888888888888874 78888888888888888888888888 999999
Q ss_pred hcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy4998 198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262 (318)
Q Consensus 198 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 262 (318)
..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999998887754
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=1.8e-28 Score=176.83 Aligned_cols=133 Identities=26% Similarity=0.315 Sum_probs=110.2
Q ss_pred CCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCcH
Q psy4998 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTP 192 (318)
Q Consensus 114 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~ 192 (318)
++++..+..|.|||+.|+..|+.+++++|++.|.+++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 4556666777788888888888888888888777777777788888888888 8888888888888888888888 8888
Q ss_pred hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247 (318)
Q Consensus 193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 247 (318)
||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8888888888888888888888888888888888888888888888888888875
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=6.4e-29 Score=188.21 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=114.7
Q ss_pred ChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998 124 ITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSGHD----NVIDILIEKGAALYSKTKAGFTPLHIASH 198 (318)
Q Consensus 124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~t~l~~a~~ 198 (318)
+++++.|+..|+.+.++.++..+. +..+ ..|.||||+|+..++. +++++|+++|++++.++..|+||||+|+.
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 355667777777777666666543 2233 4567777777777653 47777777777777777777777777777
Q ss_pred cCC------HHHHHHHHHcCCCCCcCCCCCC-CHHHHHHHcC-----CHhHHHHHHh-CCCCCCCCCCCCCCHHHHHHHc
Q psy4998 199 FGQ------LNMVRYLVENGANVNATTNLGY-TPLHQASQQG-----RVLIIDLLLG-AGAQPNATTNHGQTALNIAQKL 265 (318)
Q Consensus 199 ~~~------~~~~~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~ 265 (318)
.++ .+++++|+++|++++.+|..|. ||||+|+..+ ..+++++|++ +|++++.+|..|.||+++|.+.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence 665 5678888888888888888888 8888888744 3468888888 8888888888888888888888
Q ss_pred CCHHHHHHhhhccc
Q psy4998 266 GYISVIETLKIVTE 279 (318)
Q Consensus 266 ~~~~~~~~l~~~~~ 279 (318)
|+.+++++|..+..
T Consensus 165 ~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 165 QKPIALKMMEDYIK 178 (186)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888876643
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=3.5e-28 Score=184.14 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=134.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhccCCccccc-CCCChHHHHHHHcCcH----HHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQA-KHNITPLHVACKWGKV----AMVELLISKGANIEAKTRDGLTPLHCAAR 165 (318)
Q Consensus 91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~l~~a~~ 165 (318)
.++|+.|+..|+.+.++.++..+.+ ..+ ..|.||||+|+..++. +++++|++.|++++.++..|+||||+|+.
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 4678888888888888888776643 233 5688888888888764 48888888888888888888888888888
Q ss_pred cCC------HHHHHHHHHcCCCCcCCCCCCC-cHhHHHhhcC-----CHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHc
Q psy4998 166 SGH------DNVIDILIEKGAALYSKTKAGF-TPLHIASHFG-----QLNMVRYLVE-NGANVNATTNLGYTPLHQASQQ 232 (318)
Q Consensus 166 ~~~------~~~~~~ll~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~ 232 (318)
.++ .+++++|+++|++++.++..|. ||||+|+..+ ..+++++|++ +|++++.+|..|.||||+|++.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence 876 5889999999999999999999 9999999844 4579999999 9999999999999999999999
Q ss_pred CCHhHHHHHHhCCCCCCCCC
Q psy4998 233 GRVLIIDLLLGAGAQPNATT 252 (318)
Q Consensus 233 ~~~~~~~~Ll~~g~~~~~~~ 252 (318)
|+.+++++|+++..+.+.++
T Consensus 165 ~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 165 QKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 99999999998755555443
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=5.8e-27 Score=168.92 Aligned_cols=124 Identities=39% Similarity=0.579 Sum_probs=105.8
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Q psy4998 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233 (318)
Q Consensus 154 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 233 (318)
..+.|+||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998 234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 234 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 277 (318)
+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|..+
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888764
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=1.7e-26 Score=164.30 Aligned_cols=123 Identities=45% Similarity=0.703 Sum_probs=69.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Q psy4998 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235 (318)
Q Consensus 156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 235 (318)
|.|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 81 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998 236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT 278 (318)
Q Consensus 236 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 278 (318)
+++++|+++|++++.+|..|.||+++|+..++.+++++|.+.+
T Consensus 82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 5555555555555555555555555555555555555555443
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=1.5e-27 Score=176.18 Aligned_cols=143 Identities=24% Similarity=0.326 Sum_probs=108.7
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCh-HHHHH
Q psy4998 85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT-PLHCA 163 (318)
Q Consensus 85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~-~l~~a 163 (318)
..+..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+ .|+.+++++|++.|.+++.++..|.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 34566788888888888888888888888888888888888888874 78888888888888888888888888 99999
Q ss_pred HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Q psy4998 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228 (318)
Q Consensus 164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~ 228 (318)
+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||.+-
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 99999999999999998888888889999999999999999999999999998888888888764
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=3.2e-26 Score=162.80 Aligned_cols=126 Identities=47% Similarity=0.772 Sum_probs=122.9
Q ss_pred CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201 (318)
Q Consensus 122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~ 201 (318)
.|.|||+.|+..|+.+++++|++.+.+++..+..|.|||+.|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247 (318)
Q Consensus 202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 247 (318)
.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+|
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999986
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=1.4e-27 Score=172.45 Aligned_cols=133 Identities=31% Similarity=0.422 Sum_probs=117.5
Q ss_pred CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 225 (318)
Q Consensus 146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 225 (318)
|+++ .++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4455 678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 226 LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 226 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|+....
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999999999999999999999999998888888877766543
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=3e-26 Score=165.18 Aligned_cols=125 Identities=31% Similarity=0.520 Sum_probs=109.4
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcC
Q psy4998 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG 200 (318)
Q Consensus 121 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~ 200 (318)
..+.+||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34668888888888888888888888888888888888888888888888888888888888888888999999999999
Q ss_pred CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245 (318)
Q Consensus 201 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 245 (318)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999988989999999999999999999998876
No 92
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.93 E-value=4.8e-25 Score=155.96 Aligned_cols=119 Identities=27% Similarity=0.391 Sum_probs=108.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Q psy4998 153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232 (318)
Q Consensus 153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 232 (318)
+..+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998 233 GRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274 (318)
Q Consensus 233 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 274 (318)
++.+++++|+++|++++.+|..|.||+++|. +.++.++|
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~ll 122 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIKALL 122 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence 9999999999999999999999999999994 55555554
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=5.7e-26 Score=163.99 Aligned_cols=128 Identities=27% Similarity=0.415 Sum_probs=83.6
Q ss_pred cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHh
Q psy4998 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197 (318)
Q Consensus 118 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~ 197 (318)
.++..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666777777777
Q ss_pred hcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998 198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245 (318)
Q Consensus 198 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 245 (318)
..++.+++++|+++|++++.++..|.||+++|+..+..+++++|.+.+
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 777777777777777777777777777777777666666666665543
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=176.58 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=118.7
Q ss_pred CChHHHHHHHcCcHHHHHHHHHcCCCCCc------cCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHh
Q psy4998 123 NITPLHVACKWGKVAMVELLISKGANIEA------KTRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPL 193 (318)
Q Consensus 123 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l 193 (318)
..++|+.|+..|+.+.++.|++.|.+++. .+..|.||||+|+.. ++.+++++|+++|++++.++..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 45679999999999999999999988887 578889999999987 889999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy4998 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268 (318)
Q Consensus 194 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 268 (318)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++ .|.||+|+|+.+|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999876 468999999988763
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=6.5e-25 Score=166.44 Aligned_cols=139 Identities=25% Similarity=0.380 Sum_probs=110.6
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHHhhc
Q psy4998 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIASHF 199 (318)
Q Consensus 121 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~ 199 (318)
..|.|||+.|+..|+.+++++|++ +.+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 356678888888888888888887 77777778888888888888888888888888888887777 7788888888888
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 277 (318)
++.+++++|+++|++++.++..|.||||+|++.++. ..+.+++++|++.|..+++++|+..
T Consensus 121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 888888888888888888888888888888764332 2456788888888888888888653
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=6.4e-25 Score=174.12 Aligned_cols=141 Identities=25% Similarity=0.366 Sum_probs=123.7
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHHhhc
Q psy4998 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIASHF 199 (318)
Q Consensus 121 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~ 199 (318)
..|.||||.|+..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 357789999999999999999988 88888888899999999999999999999999999998887 7799999999999
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279 (318)
Q Consensus 200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 279 (318)
|+.+++++|+++|++++.++..|.||||+|+..+.. ..+.||+++|+..|+.+++++|.....
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-----------------~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-----------------CCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-----------------cCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 999999999999999999999999999999863221 457899999999999999999987644
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=5.9e-25 Score=172.07 Aligned_cols=133 Identities=25% Similarity=0.328 Sum_probs=88.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Q psy4998 153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQ 231 (318)
Q Consensus 153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~ 231 (318)
+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++ |++++..+..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777776 77777777777777777777
Q ss_pred cCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccceecc
Q psy4998 232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTT 285 (318)
Q Consensus 232 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~ 285 (318)
.|+.+++++|+++|++++.+|..|.||+++|+..++.++++.|..........+
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence 777777777777777777777777777777777777777766666655544333
No 98
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=1.5e-23 Score=169.10 Aligned_cols=125 Identities=26% Similarity=0.281 Sum_probs=109.4
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCC------cCCCCCCCcHhHHHhhc---CCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998 157 LTPLHCAARSGHDNVIDILIEKGAAL------YSKTKAGFTPLHIASHF---GQLNMVRYLVENGANVNATTNLGYTPLH 227 (318)
Q Consensus 157 ~~~l~~a~~~~~~~~~~~ll~~~~~~------~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~ 227 (318)
.++|+.|+..++.+.+..+++.|.++ +..+..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 35788888888888888888888874 34467889999999998 8899999999999999999999999999
Q ss_pred HHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998 228 QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT 281 (318)
Q Consensus 228 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 281 (318)
+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|...+...
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999998887754
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=5.4e-24 Score=161.38 Aligned_cols=138 Identities=26% Similarity=0.360 Sum_probs=86.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcC
Q psy4998 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSG 167 (318)
Q Consensus 89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~ 167 (318)
.|.||||.|+..|+.+++++|++ +.+++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence 34556666666666666666665 55555555566666666666666666666666666665555 55666666666666
Q ss_pred CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998 168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244 (318)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 244 (318)
+.+++++|+++|++++.++..|.||||+|+..++. ..+.++|++|+..|..+++++|.++
T Consensus 122 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 122 RPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 66666666666666666666666666666653211 2356677777777777777777654
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=9.3e-25 Score=170.94 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=109.5
Q ss_pred cCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCcHhHHHhh
Q psy4998 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASH 198 (318)
Q Consensus 120 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~ 198 (318)
+..|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 34577899999999999999999999988888888999999999999999999999988 89999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCC
Q psy4998 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255 (318)
Q Consensus 199 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 255 (318)
.|+.+++++|+++|++++.++..|.|||++|+..+..++++.|++.|+.....+..+
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999999999999999999999999999998887665543
No 101
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=8.5e-24 Score=167.66 Aligned_cols=141 Identities=26% Similarity=0.352 Sum_probs=103.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcC
Q psy4998 89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSG 167 (318)
Q Consensus 89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~ 167 (318)
.|.||||+|+..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 45677777777777777777777 66777777777777777777777777777777777776666 66777777777777
Q ss_pred CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998 168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247 (318)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 247 (318)
+.+++++|+++|++++.++..|.||||+|+..++ ...+.|||++|+..|+.+++++|++++.+
T Consensus 123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 123 RPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 7777777777777777777777788877765211 13577888888888888888888886443
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=8.4e-23 Score=164.71 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=145.0
Q ss_pred CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCC-CchHHHHHHHcCCHHHHHHHHhccCC-cccccCCCChHHHHHH
Q psy4998 54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNS-HFTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVAC 131 (318)
Q Consensus 54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~ 131 (318)
+..+.+.++.+...|+....+++...-......... +....+ ....-..+++...... .........++|+.|+
T Consensus 63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~ 138 (278)
T 1dcq_A 63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEAV 138 (278)
T ss_dssp SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence 556677888888888887776664432222111111 111111 1111112233222221 1111223356899999
Q ss_pred HcCcHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCH
Q psy4998 132 KWGKVAMVELLISKGANIE------AKTRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202 (318)
Q Consensus 132 ~~~~~~~~~~L~~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~ 202 (318)
..|+.+.+..++..|.+++ ..+..|.||||+|+.. ++.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 139 ~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence 9999999999999998844 4478899999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249 (318)
Q Consensus 203 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 249 (318)
+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999988653
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=169.13 Aligned_cols=144 Identities=22% Similarity=0.209 Sum_probs=125.2
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhccCCccc------ccCCCChHHHHHHHc---CcHHHHHHHHHcCCCCCccCCCC
Q psy4998 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN------QAKHNITPLHVACKW---GKVAMVELLISKGANIEAKTRDG 156 (318)
Q Consensus 86 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~ 156 (318)
......++|+.|+..++.+.++.|++.+.+++. .+..|.||||+|+.. ++.+++++|++.|++++.++..|
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G 226 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence 344567899999999999999999999999887 577899999999987 89999999999999999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Q psy4998 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235 (318)
Q Consensus 157 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 235 (318)
.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|++ .|.||||+|+..|+.
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999876 478999999988763
No 104
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=2.6e-23 Score=146.98 Aligned_cols=108 Identities=33% Similarity=0.416 Sum_probs=55.3
Q ss_pred CChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998 56 VKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135 (318)
Q Consensus 56 ~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 135 (318)
.+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34455555555555555555555555555555555555555555555555555555555555444445555555555555
Q ss_pred HHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy4998 136 VAMVELLISKGANIEAKTRDGLTPLHCA 163 (318)
Q Consensus 136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a 163 (318)
.+++++|++.|++++.++..|.||+++|
T Consensus 86 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 86 VSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 5555555555444444444444444444
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=1.1e-22 Score=177.45 Aligned_cols=128 Identities=23% Similarity=0.224 Sum_probs=116.8
Q ss_pred ChHHHHHHHcCcHHHHHHHHHcCCCCCcc------CCCCChHHHHHHH---cCCHHHHHHHHHcCCCCcCCCCCCCcHhH
Q psy4998 124 ITPLHVACKWGKVAMVELLISKGANIEAK------TRDGLTPLHCAAR---SGHDNVIDILIEKGAALYSKTKAGFTPLH 194 (318)
Q Consensus 124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~ll~~~~~~~~~~~~~~t~l~ 194 (318)
.+.|+.|+..|+.+.++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.++..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36799999999999999999999998877 7889999999976 89999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCC
Q psy4998 195 IASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251 (318)
Q Consensus 195 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 251 (318)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998764
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.8e-22 Score=135.18 Aligned_cols=90 Identities=42% Similarity=0.668 Sum_probs=58.2
Q ss_pred CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy4998 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268 (318)
Q Consensus 189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 268 (318)
|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhhhcc
Q psy4998 269 SVIETLKIVT 278 (318)
Q Consensus 269 ~~~~~l~~~~ 278 (318)
+++++|...+
T Consensus 82 ~~~~~Ll~~g 91 (93)
T 1n0q_A 82 EVVKLLLEAG 91 (93)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 6666665543
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=2e-22 Score=134.91 Aligned_cols=93 Identities=49% Similarity=0.787 Sum_probs=86.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Q psy4998 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234 (318)
Q Consensus 155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 234 (318)
+|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhCCCC
Q psy4998 235 VLIIDLLLGAGAQ 247 (318)
Q Consensus 235 ~~~~~~Ll~~g~~ 247 (318)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999875
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.89 E-value=2.3e-22 Score=167.50 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=117.4
Q ss_pred CCChHHHHHHHc-CCHHHHHHHHHcCCCCcCCC--CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998 155 DGLTPLHCAARS-GHDNVIDILIEKGAALYSKT--KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231 (318)
Q Consensus 155 ~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 231 (318)
.+.++||.|+.. ++.+++++|+++|++++..+ ..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456799999999 99999999999999999887 789999999999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998 232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET 280 (318)
Q Consensus 232 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 280 (318)
.|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+.....
T Consensus 278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999977643
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=2.4e-22 Score=167.43 Aligned_cols=144 Identities=24% Similarity=0.305 Sum_probs=119.5
Q ss_pred CCChHHHHHHHc-CcHHHHHHHHHcCCCCCccC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998 122 HNITPLHVACKW-GKVAMVELLISKGANIEAKT--RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198 (318)
Q Consensus 122 ~~~~~l~~a~~~-~~~~~~~~L~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~ 198 (318)
.+.++|+.|+.. ++.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 345799999999 99999999999999999888 889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCC---CCCCCCCCCCCHHHHHHHc
Q psy4998 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA---QPNATTNHGQTALNIAQKL 265 (318)
Q Consensus 199 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~l~~A~~~ 265 (318)
.++.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+. +....+..+.|+++++..+
T Consensus 278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998763 3344556677777776654
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=6.4e-22 Score=172.73 Aligned_cols=129 Identities=23% Similarity=0.221 Sum_probs=118.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCcCC------CCCCCcHhHHHhh---cCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998 156 GLTPLHCAARSGHDNVIDILIEKGAALYSK------TKAGFTPLHIASH---FGQLNMVRYLVENGANVNATTNLGYTPL 226 (318)
Q Consensus 156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~~~t~l~~a~~---~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 226 (318)
..+.|+.|+..|+.+.++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|.|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 347899999999999999999999999877 7889999999955 8999999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccceec
Q psy4998 227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVT 284 (318)
Q Consensus 227 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~ 284 (318)
|+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|...+.....+
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999998875543
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=1e-22 Score=142.16 Aligned_cols=109 Identities=39% Similarity=0.575 Sum_probs=94.2
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy4998 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230 (318)
Q Consensus 151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 230 (318)
.++..|.|+||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 35678888999999999999999999888888888888999999999999999999999999999988888999999999
Q ss_pred HcCCHhHHHHHHhCCCCCCCCCCCCCCHH
Q psy4998 231 QQGRVLIIDLLLGAGAQPNATTNHGQTAL 259 (318)
Q Consensus 231 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 259 (318)
..++.+++++|+++|++++.++..|.+|-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999988888888764
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=4.8e-21 Score=133.63 Aligned_cols=108 Identities=40% Similarity=0.611 Sum_probs=84.5
Q ss_pred ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198 (318)
Q Consensus 119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~ 198 (318)
++..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 45667777777777777777777777777777777778888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998 199 FGQLNMVRYLVENGANVNATTNLGYTPL 226 (318)
Q Consensus 199 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 226 (318)
.++.+++++|+++|++++.++..|.+|-
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 8888888888888888888887777763
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.84 E-value=2e-20 Score=129.24 Aligned_cols=93 Identities=35% Similarity=0.431 Sum_probs=84.8
Q ss_pred cCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy4998 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262 (318)
Q Consensus 183 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 262 (318)
...+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHhh
Q psy4998 263 QKLGYISVIETLK 275 (318)
Q Consensus 263 ~~~~~~~~~~~l~ 275 (318)
+..|+.+++++|+
T Consensus 98 ~~~~~~~~~~~L~ 110 (110)
T 2zgd_A 98 IDNGNEDLAEILQ 110 (110)
T ss_dssp HHHTCHHHHHHHC
T ss_pred HHcCCHHHHHHhC
Confidence 9999999999874
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=1.4e-18 Score=119.84 Aligned_cols=91 Identities=35% Similarity=0.521 Sum_probs=82.4
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy4998 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230 (318)
Q Consensus 151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 230 (318)
..+..+.++||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHhHHHHH
Q psy4998 231 QQGRVLIIDLL 241 (318)
Q Consensus 231 ~~~~~~~~~~L 241 (318)
..|+.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 99999999886
No 115
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.63 E-value=4.5 Score=29.34 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=82.0
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy4998 29 FTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108 (318)
Q Consensus 29 ~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 108 (318)
.+-+..|+..|++++.--+.+...........=..|...|++++++....+-.++. ..+......|+.+-++.
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHHhCCHHHHHH
Confidence 35688899999998887776643222223345567888899999998887643322 24445555677777776
Q ss_pred HHhccCCcccccCCCChHHHHHHHcCcHH-HHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy4998 109 LIQKHANVNNQAKHNITPLHVACKWGKVA-MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178 (318)
Q Consensus 109 ll~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 178 (318)
+.+.... .......++.+...|..+ +++.|.+.|- ..-+...|..+|..+..+-+++.
T Consensus 82 la~iA~~----~g~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 82 MQNIAQT----REDFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHH----CccHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 6543211 112235567777777654 6676665532 11356677778888888877753
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=78.97 E-value=9.7 Score=32.91 Aligned_cols=139 Identities=9% Similarity=0.057 Sum_probs=73.5
Q ss_pred HHHHHHcCCHHHHHHHH----hcCCC-CCCChhHHHHHHhCC-C-------------HHHHHHHHhCCCCCCCCCCCCch
Q psy4998 32 LAVAMQQGHDRVVAVLL----ENDTK-GKVKLPALHIAAKKD-D-------------CKAAALLLENDHSPDVKSNSHFT 92 (318)
Q Consensus 32 l~~A~~~g~~~~~~~ll----~~~~~-~~~~~~~l~~A~~~~-~-------------~~~~~~ll~~~~~~~~~~~~~~~ 92 (318)
|...++.|+++-+..++ +.|.. +...++.|..|+... . .++++.+...|..++... ..+
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t--yn~ 110 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT--FTN 110 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH--HHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH--HHH
Confidence 55556777775444444 34433 333455555555432 1 356667777776654422 123
Q ss_pred HHHHHHHcCCHHHHH----HHHhccCCcccccCCCChHHHHHHHcCcHHH----HHHHHHcCCCCCccCCCCChHHHHHH
Q psy4998 93 PLHIAAHYGNTNIAE----LLIQKHANVNNQAKHNITPLHVACKWGKVAM----VELLISKGANIEAKTRDGLTPLHCAA 164 (318)
Q Consensus 93 ~l~~a~~~~~~~~~~----~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~----~~~L~~~~~~~~~~~~~~~~~l~~a~ 164 (318)
.+...+..|+.+-.. .+.+.|..++... ..+.+...+..|..+- ++.+.+.|..++... ..+.+...+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t--y~~Li~~~~ 186 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE--LAALLKVSM 186 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHh
Confidence 455666778776444 3444555444322 2244555667777554 444445566655432 224556667
Q ss_pred HcCCHHHHHHHH
Q psy4998 165 RSGHDNVIDILI 176 (318)
Q Consensus 165 ~~~~~~~~~~ll 176 (318)
..|..+-+..++
T Consensus 187 ~~g~~d~A~~ll 198 (501)
T 4g26_A 187 DTKNADKVYKTL 198 (501)
T ss_dssp HTTCHHHHHHHH
T ss_pred hCCCHHHHHHHH
Confidence 778766554444
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=64.94 E-value=14 Score=26.76 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=79.1
Q ss_pred CccccChHHHHHHHHhcCCCCCcCCCCCCC-HHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhC
Q psy4998 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFT-PLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN 79 (318)
Q Consensus 1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~ 79 (318)
+|...|++++..-+.+...+ ..-|. .=..|...|++++++..+.+-.+-. ..+.+....|+.+-++.+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~---~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLND-----SITWERLIQEALAQGNASLAEMIYQTQHSFD---KLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH---HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH---HHHHHHHHhCCHHHHHHHHHH
Confidence 46788888888777665311 11222 3357888999999999998644322 345555567887777766442
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHH-HHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc
Q psy4998 80 DHSPDVKSNSHFTPLHIAAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145 (318)
Q Consensus 80 ~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~ 145 (318)
- .........++.+...|+.+ +++.|.+.+--.. +...|-.+|..+..+.+++.
T Consensus 86 A----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e--------A~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 86 A----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL--------AYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp H----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH--------HHHHHHHTTCHHHHHHHHHH
T ss_pred H----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH--------HHHHHHHcCcHHHHHHHHHH
Confidence 1 11122335778888888875 7777776653221 24667778888888877754
No 118
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=46.12 E-value=27 Score=30.17 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhc----CCC-CCCC-hhHHHHHHhCCCHHHHHH----HH
Q psy4998 8 DGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTK-GKVK-LPALHIAAKKDDCKAAAL----LL 77 (318)
Q Consensus 8 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~----~~~-~~~~-~~~l~~A~~~~~~~~~~~----ll 77 (318)
.++++.+.+.|..|+..... +.+...++.|+.+-+..+++. +.. +... .+.|...+..|+.+-+.. +.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn--~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFT--NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677777788876543222 456777888988766666543 333 2222 345566677888765544 44
Q ss_pred hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy4998 78 ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQ 111 (318)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 111 (318)
+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 168 ~~G~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 168 ESEVVPEEPE--LAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCCCHHH--HHHHHHHHhhCCCHHHHHHHHH
Confidence 5666554322 2234555667788764444443
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=42.49 E-value=22 Score=18.05 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=13.5
Q ss_pred HHHHHHcCCHHHHHHhhhc
Q psy4998 259 LNIAQKLGYISVIETLKIV 277 (318)
Q Consensus 259 l~~A~~~~~~~~~~~l~~~ 277 (318)
+..|+..|+++.++.|+.-
T Consensus 17 iyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 5677777777777777643
No 120
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=34.97 E-value=1.1e+02 Score=25.54 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998 221 LGYTPLHQASQQGRVLIIDLLLGA 244 (318)
Q Consensus 221 ~g~t~l~~A~~~~~~~~~~~Ll~~ 244 (318)
-|.|.+|+|++..+.+++..|+..
T Consensus 68 ~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 68 VGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCchhhhhhhhhhhhhHHHHhhhc
Confidence 388999999999999999998873
No 121
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=33.91 E-value=1e+02 Score=25.68 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=35.9
Q ss_pred ccChHHHHHHHHhcCCCCCcC--------------CCCCCCHHHHHHHcCCHHHHHHHHh
Q psy4998 4 QENHDGVVRYLLSKGGNQTLA--------------TEDGFTPLAVAMQQGHDRVVAVLLE 49 (318)
Q Consensus 4 ~~g~~~~v~~Ll~~g~~~~~~--------------~~~~~t~l~~A~~~g~~~~~~~ll~ 49 (318)
-.|+...|+..+..|.++..+ -..|.|.+|.|+++.+-+++..|+.
T Consensus 31 ~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 31 VEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 457788888888887775531 2248899999999999999999986
No 122
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.77 E-value=65 Score=21.56 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=12.5
Q ss_pred CCHHHHHHHcCCHHHHHHHHh
Q psy4998 29 FTPLAVAMQQGHDRVVAVLLE 49 (318)
Q Consensus 29 ~t~l~~A~~~g~~~~~~~ll~ 49 (318)
..++..|+.+++.++++-|++
T Consensus 36 kDAietAa~S~d~elaEeLL~ 56 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQ 56 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666666665554
No 123
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.65 E-value=2.8e+02 Score=22.31 Aligned_cols=21 Identities=0% Similarity=-0.132 Sum_probs=12.2
Q ss_pred CCCCCCCHHHHHHHcCCHHHH
Q psy4998 251 TTNHGQTALNIAQKLGYISVI 271 (318)
Q Consensus 251 ~~~~g~t~l~~A~~~~~~~~~ 271 (318)
.|.+|+-.+..+...+..+-.
T Consensus 292 ~d~ygnyViq~~L~~~~~~~r 312 (351)
T 3gvo_A 292 KDQYANYVVQKMIDMAEPAQR 312 (351)
T ss_dssp HSTTHHHHHHHHHHHCCHHHH
T ss_pred CCcchHHHHHHHHHhCCHHHH
Confidence 355666666666665555433
Done!