RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4998
(318 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 137 bits (347), Expect = 1e-40
Identities = 55/126 (43%), Positives = 87/126 (69%)
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
N + + TPLH+A G + +V+LL+ GA++ AK DG TPLH AA++GH ++ +L+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
EKGA + ++ K G TPLH+A+ G L++V+ L+++GA+VNA G TPLH A++ G +
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120
Query: 237 IIDLLL 242
++ LLL
Sbjct: 121 VVKLLL 126
Score = 134 bits (339), Expect = 3e-39
Identities = 51/126 (40%), Positives = 85/126 (67%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ + TPLH+AA G+ + +LL++ A+VN + TPLH+A K G + +V+LL+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
KGA++ A+ +DG TPLH AAR+G+ +V+ +L++ GA + ++ K G TPLH+A+ G L
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120
Query: 204 MVRYLV 209
+V+ L+
Sbjct: 121 VVKLLL 126
Score = 125 bits (317), Expect = 5e-36
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LH+AA + LLLEN + K N TPLH+AA G+ I +LL++K A+VN +
Sbjct: 10 PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
K TPLH+A + G + +V+LL+ GA++ A+ +DG TPLH AA++GH V+ +L+
Sbjct: 70 DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 125 bits (316), Expect = 8e-36
Identities = 55/124 (44%), Positives = 80/124 (64%)
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A+ DG TPLH AA +GH V+ +L+E GA + +K G TPLH+A+ G L +V+ L+E
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV 270
GA+VNA G TPLH A++ G + ++ LLL GA NA G+T L++A K G++ V
Sbjct: 62 KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEV 121
Query: 271 IETL 274
++ L
Sbjct: 122 VKLL 125
Score = 97.1 bits (242), Expect = 6e-25
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 29/143 (20%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H VV+ LL G + DG TP
Sbjct: 13 LAASNGHLEVVKLLLENGADVNAKDNDGRTP----------------------------- 43
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH+AAK + LLLE + + TPLH+AA GN ++ +LL++ A+VN +
Sbjct: 44 LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103
Query: 121 KHNITPLHVACKWGKVAMVELLI 143
K TPLH+A K G + +V+LL+
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126
Score = 53.2 bits (128), Expect = 5e-09
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
NA G TPLH A+ G + ++ LLL GA NA N G+T L++A K G++ +++ L
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 129 bits (326), Expect = 2e-34
Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 25/222 (11%)
Query: 50 NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG-----NTN 104
ND K + L++A + + +LL+N + + ++ TPLH ++
Sbjct: 28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE 87
Query: 105 IAELLIQKHANVNNQAKHNITPLHVA--CKWGKVAMVELLISKGANIEAKTRDGLTPLHC 162
I +LL++ ANVN + ITPL A K ++VE L+ GAN+ K DG LH
Sbjct: 88 IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147
Query: 163 AARSGHD------------------NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204
S N ++ L+ G + K GFTPLH A +
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
V+YL++ GAN N G TPLH A I LLL G
Sbjct: 208 VKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 67.0 bits (164), Expect = 2e-12
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 23/152 (15%)
Query: 6 NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHD--RVVAVLLEN----DTKGKVKLP 59
N +V YLL G N + DG L + ++ +++ +L++ + K +V
Sbjct: 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNY- 177
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LL ++K FTPLH A + N + L+ AN N
Sbjct: 178 ----------------LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV 221
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEA 151
K+ TPLH+A + +LL++ G +I+
Sbjct: 222 NKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
Score = 55.8 bits (135), Expect = 8e-09
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
+I + K PL++A +++V+ L++NGA++N++T TPLH S
Sbjct: 21 IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80
Query: 235 VL-----IIDLLLGAGAQPNATTNHGQTALNIA--QKLGYISVIETL 274
L I+ LLL GA NA N+G T L A +K S++E L
Sbjct: 81 NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYL 127
Score = 31.6 bits (72), Expect = 0.61
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
A N+ V+YLL G N L + G TPL +A+ + + +LL N
Sbjct: 199 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 247
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 113 bits (285), Expect = 2e-28
Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 35/263 (13%)
Query: 9 GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKD 68
VR LL+ G + E G TPL + + ++V ++
Sbjct: 28 EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVR-------------------- 67
Query: 69 DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPL 127
LLLE + FTPLH+ + T ++ +LLI+ A+VN + K TPL
Sbjct: 68 ------LLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121
Query: 128 HVAC--KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV--IDILIEKGAALY 183
HV ++ LL+ KGA++ A G+TPL +S + NV + +LI+ GA +Y
Sbjct: 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY 181
Query: 184 SKTKAGFTPLHIASHFGQLN--MVRYLVENGANVNATTNLGYTPLHQASQQG--RVLIID 239
+ + LH + +VR L+ G + AT LG TPLH + + ++
Sbjct: 182 AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL 241
Query: 240 LLLGAGAQPNATTNHGQTALNIA 262
LL AG NA +GQT L+ A
Sbjct: 242 PLLIAGISINARNRYGQTPLHYA 264
Score = 83.5 bits (207), Expect = 7e-18
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 7/148 (4%)
Query: 135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI---LIEKGAALYSKTKAGFT 191
V V L++ GA++ + G TPLH + V DI L+E GA + + + GFT
Sbjct: 26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85
Query: 192 PLHIASHFGQ-LNMVRYLVENGANVNATTNLGYTPLHQ--ASQQGRVLIIDLLLGAGAQP 248
PLH+ + L++++ L++ GA+VNA +G TPLH + +I LLL GA
Sbjct: 86 PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV 145
Query: 249 NATTNHGQTALNIAQKLGYISVIETLKI 276
NA +G T L + K +V E L++
Sbjct: 146 NALDLYGMTPLAVLLKSRNANV-ELLRL 172
Score = 62.3 bits (152), Expect = 7e-11
Identities = 62/273 (22%), Positives = 92/273 (33%), Gaps = 64/273 (23%)
Query: 7 HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAK 66
+ V+R LL KG + G TPL AVLL++ V+L L I A
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPL------------AVLLKS-RNANVELLRLLIDAG 177
Query: 67 KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITP 126
D + + LH
Sbjct: 178 ADVYA--------------VDDRFRSLLHHHLQSFKPR---------------------- 201
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR--SGHDNVIDILIEKGAALYS 184
A V LI G + A G TPLH A S +++ L+ G ++ +
Sbjct: 202 ---ARI------VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
+ + G TPLH A+ F R L+ GA++NA ++ G TPL + + L
Sbjct: 253 RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL-- 310
Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277
P+A T LN A G + ++
Sbjct: 311 AKNPSAETVAA--TLNTASVAGGDIPSDATRLC 341
Score = 36.2 bits (84), Expect = 0.021
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
AA N+ R L++ G + + DG TPL++ ++ + R V L
Sbjct: 263 YAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 96.9 bits (242), Expect = 2e-25
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
LH+AA GN + +LL++K A+VN T LH+A + G + +V+LL+ GA++ AK
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGA 180
+DG T LH AAR+G+ ++ +L+E GA
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGA 85
Score = 95.8 bits (239), Expect = 7e-25
Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
LH+A K G + +V+LL+ KGA++ D T LH AAR+G+ ++ +L+E GA + +K
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNAT 218
K G T LH+A+ G L +V+ L+E+GA++N
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 89.2 bits (222), Expect = 1e-22
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
LH AA++G+ ++ +L+EKGA + T LH+A+ G L +V+ L+E+GA+VNA
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
G T LH A++ G + I+ LLL GA N
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 89.2 bits (222), Expect = 2e-22
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH+AAK + + LLLE ++ T LH+AA GN I +LL++ A+VN +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAK 152
K T LH+A + G + +V+LL+ GA+I K
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 73.4 bits (181), Expect = 1e-16
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
LH+A+ G L +V+ L+E GA+VN T LH A++ G + I+ LLL GA NA
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 253 NHGQTALNIAQKLGYISVIETL 274
G TAL++A + G + +++ L
Sbjct: 59 KDGNTALHLAARNGNLEIVKLL 80
Score = 68.8 bits (169), Expect = 6e-15
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 32 LAVAMQQGHDRVVAVLLEN--DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNS 89
L +A + G+ +V +LLE D ALH+AA+ + + LLLE+ + K
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 90 HFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
T LH+AA GN I +LL++ A++N +
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 44.2 bits (105), Expect = 4e-06
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEND 51
+AA+ + +V+ LL G + +DG T L +A + G+ +V +LLE+
Sbjct: 34 LAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 94.5 bits (234), Expect = 9e-23
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Query: 71 KAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI-TPLHV 129
A LLL + + L +A + LL + PLH
Sbjct: 20 LVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHS 79
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN-----VIDILIEKGAALYS 184
A G +V+LL++ GA++ AK DG TPLH AA +G+ V +L+E GA L
Sbjct: 80 AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139
Query: 185 KT---KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
+ G TPLH A+ G ++V L+E GA+ N+ + G T L A++ GR+ ++ LL
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199
Query: 242 L 242
L
Sbjct: 200 L 200
Score = 78.7 bits (193), Expect = 4e-17
Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLE------- 78
+ + L + + D ++ LL + + + A L
Sbjct: 2 KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61
Query: 79 NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK--- 135
D + PLH AA G+ I +LL+ A+VN + TPLH+A G
Sbjct: 62 VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121
Query: 136 --VAMVELLISKGANIEAKTR---DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF 190
+ + +LL+ GA+++ DG TPLH AA +G +++++L+E GA S+ G
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNL 221
T L A+ G++ +V+ L++ G +++
Sbjct: 182 TALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212
Score = 77.9 bits (191), Expect = 8e-17
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 8/171 (4%)
Query: 20 NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN 79
++ L L A + V + LH AA K D K LLL +
Sbjct: 36 DKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS 95
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTN-----IAELLIQKHANVNN---QAKHNITPLHVAC 131
+ K TPLH+AA GN +A+LL++ A+++ + + TPLH A
Sbjct: 96 GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Query: 132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 182
G +VELL+ GA+ ++ G+T L AA++G ++ +L++KG L
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206
Score = 52.9 bits (126), Expect = 4e-08
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 27/150 (18%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA + D +V+ LL+ G + DG TPL +A G+
Sbjct: 80 AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP-------------------- 119
Query: 62 HIAAKKDDCKAAALLLEN---DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+ + + A LLLE +++ TPLH AA G+ +I ELL++ A+ N+
Sbjct: 120 ----PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGAN 148
+ + +T L A K G++ +V+LL+ KG +
Sbjct: 176 RNSYGVTALDPAAKNGRIELVKLLLDKGLH 205
Score = 32.9 bits (74), Expect = 0.18
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
AA +V LL G + G T L A + G +V +LL+
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 97.6 bits (243), Expect = 1e-22
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 7/261 (2%)
Query: 9 GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV--KLPALHIAAK 66
VV+ LL++G N TPL + ++ + + ++ + K V L A+ A
Sbjct: 51 DVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFN 110
Query: 67 KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI-T 125
+ + ++L N + + + I +LL+ A++N + +H T
Sbjct: 111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNT 170
Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 185
LH A + + ELL+S GAN+ + +PLH A + + ++ IL+E GA+ ++
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR 230
Query: 186 TKAGFTPLHIA-SHFGQLNMVRYLVENGANVNA-TTNLGYTPLHQASQQGRVLIIDLLLG 243
K G TPLHI+ + ++++ L+E+G +VNA + LG T LH + + R L LLL
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKL--KLLLE 288
Query: 244 AGAQPNATTNHGQTALNIAQK 264
GA N+ ++ T L+ A K
Sbjct: 289 YGADINSLNSYKLTPLSSAVK 309
Score = 72.2 bits (177), Expect = 4e-14
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW-GKVAMVELLISKG--- 146
F PLH A N ++ + L+ + NVN ++TPLH+ CK K+ M E++ S
Sbjct: 38 FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97
Query: 147 -ANIEAKTRDG------------LTPLHCAARS---------GHDNVID-----ILIEKG 179
+D LT + ++ D++I+ +L+ G
Sbjct: 98 VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157
Query: 180 AALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
A + K + G T LH A+ + L+ GANVN +PLH A + I+
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217
Query: 239 DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279
+LL GA +A G T L+I+ +GY + LK++ E
Sbjct: 218 HILLENGASTDARDKCGNTPLHIS--VGYCKDYDILKLLLE 256
Score = 65.3 bits (159), Expect = 8e-12
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 11/158 (6%)
Query: 60 ALHIAAKKDDCKAAALLL---ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
ALH A + D + LLL N + PD +NS PLH A + N I +L++ A+
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNS---PLHHAVKHYNKPIVHILLENGAST 227
Query: 117 NNQAKHNITPLHVACKWGK-VAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDI 174
+ + K TPLH++ + K +++LL+ G ++ AK GLT LH + +S + + +
Sbjct: 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKL 285
Query: 175 LIEKGAALYSKTKAGFTPLHIA-SHFGQLNMVRYLVEN 211
L+E GA + S TPL A + +N+ R L+ N
Sbjct: 286 LLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323
Score = 49.1 bits (117), Expect = 1e-06
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 35/178 (19%)
Query: 3 AQENHD-GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
A EN D + LLS G N + + +P L
Sbjct: 175 ATENKDQRLTELLLSYGANVNIPDKTNNSP-----------------------------L 205
Query: 62 HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHY-GNTNIAELLIQKHANVNNQA 120
H A K + +LLEN S D + TPLHI+ Y + +I +LL++ +VN ++
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265
Query: 121 K-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD-NVIDILI 176
+T LH + K + ++LL+ GA+I + LTPL A + N+ ILI
Sbjct: 266 YILGLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 93.5 bits (232), Expect = 2e-21
Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 31/245 (12%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDD 69
+ R LL G N DG +P+ +AM K D
Sbjct: 17 IARRLLDIGINPNFEIYDGISPIKLAM-----------------------------KFRD 47
Query: 70 CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA-KHNITPLH 128
+A LL+++ PDVK + LH A G+ E L+ ++ K +TPLH
Sbjct: 48 SEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH 107
Query: 129 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA 188
+A K+ +++LLI++GA+ + D +PLH A G I++LI+ A L +
Sbjct: 108 LATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC 167
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLG-YTPLHQASQQGRVLIIDLLLGAGAQ 247
G TPL IA G + + + L+++GAN++ G L A + ++ I+ L + GA
Sbjct: 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227
Query: 248 PNATT 252
N
Sbjct: 228 CNIMF 232
Score = 83.5 bits (206), Expect = 5e-18
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 1/188 (0%)
Query: 73 AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACK 132
A LL+ +P+ + +P+ +A + ++ +LL++ A + + + LH A +
Sbjct: 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVE 77
Query: 133 WGKVAMVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT 191
G V VE L+ G + +DG+TPLH A +++ +LI +GA F+
Sbjct: 78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS 137
Query: 192 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
PLH+A G + + L+++ A ++ G TPL A +G + I +LL +GA +
Sbjct: 138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF 197
Query: 252 TNHGQTAL 259
+G A
Sbjct: 198 GKNGCVAA 205
Score = 74.3 bits (182), Expect = 6e-15
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
A +G +IA L+ N N + I+P+ +A K+ ++LL+ GA + K D
Sbjct: 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68
Query: 157 LTPLHCAARSGHDNVIDILIEKGA----ALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
+ LH A G ++ L++ G Y K G TPLH+A+ +L++++ L+ G
Sbjct: 69 ESELHDAVEEGDVKAVEELLDLGKFADDVFY---KDGMTPLHLATILKKLDIMKLLIARG 125
Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
A+ + ++PLH A G + I+LL+ A + G T L IA G I++ +
Sbjct: 126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK 185
Query: 273 TL 274
L
Sbjct: 186 ML 187
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 88.9 bits (220), Expect = 9e-20
Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 11/246 (4%)
Query: 31 PLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH 90
PL A++ G ++ +L++N + LP I +KD K +L+ ++K
Sbjct: 71 PLLTAIKIGAHDIIKLLIDNGVDTSI-LPIPCI--EKDMIKT---ILDCGIDVNIKDAEL 124
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
T LH A G+ ++L + A+VN + + P+H+A K +++LL+ KGA
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
K +G +PLH AA G I +LI+ G + +K K GFTPLH A + + + L+
Sbjct: 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN 243
Query: 211 NGANVNATTNLGYTPLHQASQQG-RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
N A++N G TPLH A + IID+LL A + N G+ ++ A K YI+
Sbjct: 244 N-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK--YIN 300
Query: 270 VIETLK 275
+K
Sbjct: 301 KDPVIK 306
Score = 87.3 bits (216), Expect = 3e-19
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 31/271 (11%)
Query: 16 SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDC 70
+KG ++ ++ TPL A++ G ++V + ++ N K+ P L A K
Sbjct: 23 NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLL-TAIKIGAH 81
Query: 71 KAAALLLEN--DHS----PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI 124
LL++N D S P + ++ + ++ +VN +
Sbjct: 82 DIIKLLIDNGVDTSILPIPCI----------------EKDMIKTILDCGIDVNIKDAELK 125
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
T LH A K G + +++L GA++ + +G P+H A + ++I +L+EKGA
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
K G +PLH A+ +G ++ L+++G ++ G+TPLH A R I+LL+
Sbjct: 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLIN- 243
Query: 245 GAQPNATTNHGQTALNIA-QKLGYISVIETL 274
A N G T L+ A I +I+ L
Sbjct: 244 NASINDQDIDGSTPLHHAINPPCDIDIIDIL 274
Score = 61.9 bits (150), Expect = 9e-11
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 101 GNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
G+ E +I+ N +N TPL A + G +VEL I GA+I P
Sbjct: 12 GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP 71
Query: 160 LHCAARSGHDNVIDILI-----------------------EKGAALYSKTKAGFTPLHIA 196
L A + G ++I +LI + G + K T LH A
Sbjct: 72 LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYA 131
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
G L ++ L E GA+VN + G P+H A + II LLL GA N N+G+
Sbjct: 132 IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE 191
Query: 257 TALNIAQKLGYISVIETL 274
+ L+ A + G + I+ L
Sbjct: 192 SPLHNAAEYGDYACIKLL 209
Score = 47.7 bits (113), Expect = 5e-06
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 32/166 (19%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A + N +++ LL KG + +G +P
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESP----------------------------- 193
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH AA+ D LL+++ + K + FTPLH A + N + ELLI +A++N+Q
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH-NRSAIELLIN-NASINDQD 251
Query: 121 KHNITPLHVACKWG-KVAMVELLISKGANIEAKTRDGLTPLHCAAR 165
TPLH A + ++++L+ A+I K G P+ A +
Sbjct: 252 IDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297
Score = 31.1 bits (70), Expect = 0.80
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 200 GQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
G + + +++N N +N + + TPL A + G I++L + GA N
Sbjct: 12 GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP 71
Query: 259 LNIAQKLGYISVIETLKI 276
L A K+G +I+ L
Sbjct: 72 LLTAIKIGAHDIIKLLID 89
Score = 28.4 bits (63), Expect = 5.2
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 32/124 (25%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDC 70
++ L+ G + ++GFTPL A+ H+R
Sbjct: 206 IKLLIDHGNHIMNKCKNGFTPLHNAII--HNR---------------------------- 235
Query: 71 KAAALLLENDHSPDVKSNSHFTPLHIAAHYG-NTNIAELLIQKHANVNNQAKHNITPLHV 129
+A LL N+ S + + TPLH A + + +I ++L+ A+++ + P+
Sbjct: 236 -SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294
Query: 130 ACKW 133
A K+
Sbjct: 295 AFKY 298
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 82.4 bits (203), Expect = 2e-17
Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 15/268 (5%)
Query: 4 QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV----KLP 59
Q++ + LL G + TP+ A ++G+ ++V +LL + L
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNI--AELLIQKHANVN 117
L A + +++N +SN + L + N ++ + LL +VN
Sbjct: 214 VLECAVDSKNIDTIKAIIDN------RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN 267
Query: 118 NQAKHNITPLHVACKWGKVA-MVELLISKGANIEAKTRDGLTPLHCAARSGHDNV-IDIL 175
+ TPLH A + ++ +V L+ +GA++ AK G TPL+ A++G+D I L
Sbjct: 268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL 327
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQL-NMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
I GA + + + TPLH AS + ++V L+E GANVNA TP+H A+ +
Sbjct: 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN 387
Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIA 262
V+II+ LL GA A + TAL+ A
Sbjct: 388 VVIINTLLDYGADIEALSQKIGTALHFA 415
Score = 79.3 bits (195), Expect = 2e-16
Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 40/311 (12%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-GKVKLPA 60
AA+ + +V LLS G + + D + L A+ + + +++N + K L
Sbjct: 185 AAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSL 244
Query: 61 LHIAAKKD------------------DCKAAAL---------------LLENDHSPDVKS 87
L +D DCK L LLE + K+
Sbjct: 245 LKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN 304
Query: 88 NSHFTPLHIAAHYG-NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA-MVELLISK 145
TPL++ A G +T LI A+VN + ITPLH A + +V L+
Sbjct: 305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL 364
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM- 204
GAN+ A+ TP+H AA + +I+ L++ GA + + ++ T LH A M
Sbjct: 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS 424
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQG-RVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
V+ L++ GANVN+ TPLH A ++ ++ +I++LL GA NA Q L IA
Sbjct: 425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA- 483
Query: 264 KLGYISVIETL 274
L Y ++ L
Sbjct: 484 -LEYHGIVNIL 493
Score = 78.2 bits (192), Expect = 5e-16
Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 32/241 (13%)
Query: 66 KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNIT 125
++D+ A +LLE + K TP+H AA GN + LL+ A+VN A +++
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213
Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGL---------------------------- 157
L A + ++ +I +NI L
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273
Query: 158 -TPLHCAARSGH-DNVIDILIEKGAALYSKTKAGFTPLHIASHFG-QLNMVRYLVENGAN 214
TPLH A+++ ++ L+E+GA + +K G TPL++ + G +R L+ GA+
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333
Query: 215 VNATTNLGYTPLHQASQQGRVL-IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIET 273
VNA L TPLHQAS R I+ LL GA NA +T ++ A + +I T
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393
Query: 274 L 274
L
Sbjct: 394 L 394
Score = 68.6 bits (167), Expect = 9e-13
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 11/227 (4%)
Query: 30 TPLAVAMQQGH-DRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSP 83
TPL A Q R+V LLE N K + P +A D + L+
Sbjct: 275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV 334
Query: 84 DVKSNSHFTPLHIAAHYG-NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
+ + TPLH A+ N +I L++ ANVN + + TP+H A V ++ L
Sbjct: 335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTL 394
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNV-IDILIEKGAALYSKTKAGFTPLHIASHFG- 200
+ GA+IEA ++ T LH A + + + LI++GA + SK K TPLH A
Sbjct: 395 LDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC 454
Query: 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
+L+++ L++NGA+VNA PL A I+++LL GA+
Sbjct: 455 KLDVIEMLLDNGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGAE 499
Score = 55.8 bits (134), Expect = 1e-08
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 16/236 (6%)
Query: 11 VRYLLSKGGNQTLATEDGFTPL--AVAMQQGHDRVVAVL---LENDTKGKVKLPALHIAA 65
+R L+ G + A TPL A + + D V+ +L + + +H AA
Sbjct: 324 IRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383
Query: 66 KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIA-ELLIQKHANVNNQAKHNI 124
+++ LL+ + S T LH A N ++ + LI + ANVN++ K
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLS 443
Query: 125 TPLHVACKWG-KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
TPLH ACK K+ ++E+L+ GA++ A PL A + +++IL+ GA L
Sbjct: 444 TPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILLHYGAELR 501
Query: 184 -------SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
S F+ +I +H + +R+ + N N +T L ++ ++
Sbjct: 502 DSRVLHKSLNDNMFSFRYIIAHICIQDFIRHDIRNEVNPLKRVPTRFTSLRESFKE 557
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 69.1 bits (169), Expect = 6e-14
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 92 TPLH--IAAHYGNTNIAELLIQKHANVNNQAKH-NITPLHVACKWGK---VAMVELLISK 145
TP+ + N I + LI+ A+VN + + N++ LH + K ++++LI
Sbjct: 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS 112
Query: 146 GANIEAKTRDGLTPLH-----CAARSGHDNVIDILIEKGAALYSKTKAGFTPLH--IASH 198
G++I + DG LH R NVI +LI+ G + +K L+ I H
Sbjct: 113 GSSITEEDEDGKNLLHMYMCNFNVRI---NVIKLLIDSGVSFLNKDFDNNNILYSYILFH 169
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTP 225
+ + +L G ++N T GY
Sbjct: 170 SDK-KIFDFLTSLGIDINETNKSGYNC 195
Score = 39.4 bits (92), Expect = 0.001
Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 75 LLLENDHSPDVKS-NSHFTPLHIAAHYG---NTNIAELLIQKHANVNNQAKHNITPLHV- 129
L+EN + K+ +++ + LH + I ++LI +++ + + LH+
Sbjct: 71 FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMY 130
Query: 130 ACKWG-KVAMVELLISKGANIEAKTRDGLTPLHC--AARSGHDNVIDILIEKGAALYSKT 186
C + ++ +++LLI G + K D L+ S + D L G +
Sbjct: 131 MCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS-DKKIFDFLTSLGIDINETN 189
Query: 187 KAGFTPLHI 195
K+G+ +
Sbjct: 190 KSGYNCYDL 198
Score = 34.8 bits (80), Expect = 0.030
Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 191 TPLH--IASHFGQLNMVRYLVENGANVNATT-NLGYTPLH---QASQQGRVLIIDLLLGA 244
TP+ + + ++++L+ENGA+VN T + + LH ++ I+ +L+ +
Sbjct: 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS 112
Query: 245 GAQPNATTNHGQTALNIAQKLGYISV-IETLKIVTE 279
G+ G+ L++ + +V I +K++ +
Sbjct: 113 GSSITEEDEDGKNLLHMY--MCNFNVRINVIKLLID 146
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 69.1 bits (169), Expect = 4e-13
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 103 TNIAELLIQKHANVNNQAKHNITPL-----HVACKWGKVAMVELLISKGANIEAKTRDGL 157
T+I +L I ANVN TPL ++ + +V++LI GA+I K DG
Sbjct: 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110
Query: 158 TPLHCAARSGHDNVIDIL---IEKGAALYSKTKAGFTPLHI---ASHFGQLNMVRYLVEN 211
TPL+C +G+ N ++IL IE GA K GFT L + ++H + +++ L+E
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170
Query: 212 GANVNATTN-LGYTPLH 227
G ++N N Y LH
Sbjct: 171 GVDINTHNNKEKYDTLH 187
Score = 61.4 bits (149), Expect = 1e-10
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD------NVIDILIEKGAALYSKTKA 188
+V+L I+ GAN+ + TPL C S +++ ILIE GA + K
Sbjct: 50 STDIVKLFINLGANVNGLDNEYSTPL-CTILSNIKDYKHMLDIVKILIENGADINKKNSD 108
Query: 189 GFTPLHIASHFGQLN---MVRYLVENGANVNATTNLGYTPLH---QASQQGRVLIIDLLL 242
G TPL+ G +N ++ +++ENGA+ G+T L Q++ + II LLL
Sbjct: 109 GETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL 168
Query: 243 GAGAQPNATTN 253
G N N
Sbjct: 169 EKGVDINTHNN 179
Score = 53.7 bits (129), Expect = 5e-08
Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 55/240 (22%)
Query: 75 LLLENDHSPDVKSNSHFTPL-----HIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHV 129
L + + + N + TPL +I + +I ++LI+ A++N + TPL+
Sbjct: 56 LFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC 115
Query: 130 ACKWGKVAMVELL---ISKGANIEAKTRDGLTPLHCAARSGHD---NVIDILIEKGAALY 183
G + +E+L I GA+ +DG T L +S H +I +L+EKG +
Sbjct: 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175
Query: 184 S-KTKAGFTPLH--IASHFGQLNM--VRYLVENG-------------------------- 212
+ K + LH + +++ ++ V+NG
Sbjct: 176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNK 235
Query: 213 -------------ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
++N LG+ PL+ + I + LL G N T G T L
Sbjct: 236 RFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCL 295
Score = 44.8 bits (106), Expect = 4e-05
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 6 NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHD---RVVAVLLE-----NDTKGKVK 57
N+ ++ +++ G + TL +DGFT L V +Q H ++ +LLE N K K
Sbjct: 123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEK 182
Query: 58 LPALHIAAKKD----DCKAAALLLENDHSPDVKSNSH---FTPLHIAAHYGNTNIAEL-- 108
LH K + D L ++N + ++ SH F + Y N +
Sbjct: 183 YDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNIL 242
Query: 109 -LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
I + ++N + PL+ + + E L+ G +I T G T L A +
Sbjct: 243 DFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENE 302
Query: 168 HDNVIDILIEK 178
+ + ++ K
Sbjct: 303 SKFIFNSILNK 313
Score = 41.7 bits (98), Expect = 3e-04
Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 50/218 (22%)
Query: 75 LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL---IQKHANVNNQAKHNITPLHVAC 131
+L+EN + K++ TPL+ G N E+L I+ A+ K T L V
Sbjct: 94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153
Query: 132 KWG---KVAMVELLISKGANIEA-KTRDGLTPLHCAARSGHD----NVIDILIEKGAALY 183
+ + +++LL+ KG +I ++ LHC + D +++ + ++ G +
Sbjct: 154 QSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN 213
Query: 184 SKTKA---------------------------------------GFTPLHIASHFGQLNM 204
+ K+ GF PL+ + +
Sbjct: 214 KENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI 273
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
YL++ G ++N T LG T L A + I + +L
Sbjct: 274 FEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSIL 311
Score = 30.2 bits (68), Expect = 1.8
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 202 LNMVRYLVENGANVNATTNLGYTPL-----HQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
++V+ + GANVN N TPL + + + I+ +L+ GA N + G+
Sbjct: 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110
Query: 257 TALNIAQKLGYISVIETLKIVTETTIVTTTV 287
T L GYI+ +E L + E TT +
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLL 141
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 65.9 bits (161), Expect = 7e-12
Identities = 54/273 (19%), Positives = 87/273 (31%), Gaps = 82/273 (30%)
Query: 28 GFTPLAVAMQQG-HDRVVAVLLENDTKGKVKLPALHIAAK--KDDCKAAALLLENDHSPD 84
G + L VA + + + +LL +G V LH + D +A L L
Sbjct: 52 GRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS 111
Query: 85 V-------KSNSHF----TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW 133
+ S F T LH+AAH N I +LL+++ A+V
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-----------PARAC- 159
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
+ S+G + PL
Sbjct: 160 ----GDFFVKSQGVD-------------SFYHGES-----------------------PL 179
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLH------QASQQGRVLII---DLLLGA 244
+ A+ G ++V L E+ A++ +LG T LH + + L + L
Sbjct: 180 NAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSL 239
Query: 245 GAQPNAT------TNH-GQTALNIAQKLGYISV 270
+ + NH G T L +A K G I +
Sbjct: 240 LDKLRDSKELEVILNHQGLTPLKLAAKEGRIVL 272
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 56.1 bits (136), Expect = 1e-10
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
T LH A G++ +V+ L+ KG +I DG T LH AA +G+ V+ +L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 55.7 bits (135), Expect = 1e-10
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV 209
G T LH AA SG ++ L+EKG + + G T LHIA+ G L +++ L+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 52.6 bits (127), Expect = 1e-09
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
G T LH A+ G+L +V+YL+E G ++N T G T LH A++ G + ++ LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.2 bits (118), Expect = 2e-08
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 90 HFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
T LH AA G + + L++K ++N + T LH+A + G + +++LL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 46.8 bits (112), Expect = 2e-07
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLI 110
ALH AA + LLE + T LHIAA GN + +LL+
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 41.5 bits (98), Expect = 2e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
G T LH+A+ GR+ ++ LL G N T G TAL+IA + G + V++ L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 31.1 bits (71), Expect = 0.070
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLL 48
AA +V+YLL KG + EDG T L +A + G+ V+ +LL
Sbjct: 7 KAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 50.0 bits (120), Expect = 2e-08
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 175 LIEKGAALY-SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 229
L+E G + G TPLH+A+ +G L +V++L++ G ++N + G T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 49.3 bits (118), Expect = 3e-08
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 208 LVENG-ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
L+E+G ++NAT G TPLH A++ G + ++ LL G N + G TAL++A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 47.3 bits (113), Expect = 1e-07
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 108 LLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
LL ++N + TPLH+A K+G + +V+ L+ G ++ + DGLT L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 46.2 bits (110), Expect = 3e-07
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 76 LLENDH-SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA 130
LLE+ + + TPLH+AA YG + + L++ ++N + +T L +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 45.0 bits (107), Expect = 8e-07
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 142 LISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
L+ G ++ A +G TPLH AA+ G ++ L++ G L + G T L +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 33.5 bits (77), Expect = 0.012
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIA 97
LH+AAK + LL+ +++ + T L +A
Sbjct: 19 PLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 26.2 bits (58), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVA 35
+AA+ +V++LL G + L DG T L +A
Sbjct: 22 LAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 54.5 bits (131), Expect = 3e-08
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 44 VAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103
+A + E + L AL KD L E P V +AA G+
Sbjct: 37 MAAIQEEIARIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAAS-GDA 95
Query: 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
A +L+ A+ N + TPLH+AC G V +V +L+ GA+ +DG TPL A
Sbjct: 96 VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155
Query: 164 ARSGHDNVIDIL 175
+G V+ +L
Sbjct: 156 EENGFREVVQLL 167
Score = 53.7 bits (129), Expect = 5e-08
Identities = 29/80 (36%), Positives = 38/80 (47%)
Query: 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 223
A SG IL+ GA + G TPLHIA G + +VR L+E GA+ G
Sbjct: 90 AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149
Query: 224 TPLHQASQQGRVLIIDLLLG 243
TPL A + G ++ LL
Sbjct: 150 TPLELAEENGFREVVQLLSR 169
Score = 50.3 bits (120), Expect = 8e-07
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
R L+ GA+ N G TPLH A G V ++ +LL GA P G+T L +A++
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 265 LGYISVIETL 274
G+ V++ L
Sbjct: 158 NGFREVVQLL 167
Score = 44.9 bits (106), Expect = 4e-05
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
G +L++ GA+ + DG TPLH A +GH V+ +L+E GA K G TPL
Sbjct: 93 GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152
Query: 194 HIASHFGQLNMVRYL 208
+A G +V+ L
Sbjct: 153 ELAEENGFREVVQLL 167
Score = 39.5 bits (92), Expect = 0.002
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 62 HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+AA D A +LL P+ + TPLHIA G+ + +L++ A+ K
Sbjct: 88 QLAASGDAV-GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
Query: 122 HNITPLHVACKWGKVAMVELLIS 144
TPL +A + G +V+LL
Sbjct: 147 DGKTPLELAEENGFREVVQLLSR 169
Score = 36.0 bits (83), Expect = 0.023
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 226 LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L Q + G + +LL GA PN G+T L+IA G++ V+ L
Sbjct: 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVL 134
Score = 34.9 bits (80), Expect = 0.051
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLL 48
+A H VVR LL G + TL +DG TPL +A + G VV +L
Sbjct: 121 IACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168
Score = 33.3 bits (76), Expect = 0.17
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
R LL+ G + DG TPL +A GH +VV VLLE
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE 136
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 54.9 bits (132), Expect = 3e-08
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 51 DTKGKVKLPALHIAAKK--DDCKAAALLLE---NDHSPDVKSNSHFTPLHIAAHYGNTNI 105
D+KG+ LHIAA K +DC +LL+ N H D N+ A H+ I
Sbjct: 555 DSKGRT---PLHIAASKGYEDC--VLVLLKHACNVHIRDANGNTALWNAISAKHH---KI 606
Query: 106 AELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR 165
+L + + A ++ L A K + ++ L+ +G N++++ G T L A
Sbjct: 607 FRILYHFASISDPHAAGDL--LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA 664
Query: 166 SGHDNVIDILIEKGAAL-YSKTKAGFTPL 193
H +++ +LI GA + + T F+P
Sbjct: 665 EDHVDMVRLLIMNGADVDKANTDDDFSPT 693
Score = 49.9 bits (119), Expect = 9e-07
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)
Query: 76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
LL+ PD+ + TPLHIAA G + +L++ NV H+ G
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-----------HIRDANGN 592
Query: 136 VAMVELLISKGANIE------AKTRDGLTP--LHC-AARSGHDNVIDILIEKGAALYSKT 186
A+ + +K I A D L C AA+ + L+++G + S+
Sbjct: 593 TALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED 652
Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVN-ATTNLGYTPL 226
G T L +A ++MVR L+ NGA+V+ A T+ ++P
Sbjct: 653 HQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT 693
Score = 46.4 bits (110), Expect = 1e-05
Identities = 47/233 (20%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 102 NTNIAELLIQ---KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 158
+ N+ +LL +H + N + N+ L VA G A++E L+ + + G T
Sbjct: 506 DLNVGDLLGDNGGEHDDPNMAS--NL--LTVAST-GNAALLEELLKAKLDPDIGDSKGRT 560
Query: 159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL--HIASHFGQLNMVRYLVENGANVN 216
PLH AA G+++ + +L++ ++ + G T L I++ ++ + Y + ++ +
Sbjct: 561 PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPH 620
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL-- 274
A +L L A+++ + + LL G ++ + G TAL +A ++ ++ L
Sbjct: 621 AAGDL----LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676
Query: 275 ------KIVTETTIVTTTVTTIEEK----YRVVAPEAMQEVYMSDSEDEGGRK 317
K T+ T + + +K + + +++ D G R
Sbjct: 677 NGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPDLGRDGGSRP 729
Score = 39.5 bits (92), Expect = 0.002
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 32/161 (19%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA + ++ V LL N + +G T L A+ H ++ +L
Sbjct: 564 IAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRIL------------- 610
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
H A+ D A LL AA + + L+++ NV+++
Sbjct: 611 YHFASISDPHAAGDLLCT------------------AAKRNDLTAMKELLKQGLNVDSED 652
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIE-AKTRDGLTPL 160
T L VA V MV LLI GA+++ A T D +P
Sbjct: 653 HQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT 693
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 54.1 bits (130), Expect = 4e-08
Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 59/234 (25%)
Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA--MVELLISKGANIEAKTRDGL 157
Y + +I E L NVN Q H ITPLH G V +++ +I G +++ K +G+
Sbjct: 189 YVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGM 248
Query: 158 TP----------------------------------LHC---AARSGHDNVIDILIEKGA 180
+P LH AR+ +V+ ++ G
Sbjct: 249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV 308
Query: 181 ALYSKTKAGFTPLH--IASHFGQLNMVRYLVENGANVNATTNLGYTPLH----------- 227
L+ K AG T LH I H ++++ L E G ++N N+G T LH
Sbjct: 309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNI 368
Query: 228 ---QASQQGRVLIIDLLLGAGAQPNATTNHGQTALN----IAQKLGYISVIETL 274
+ R+ +I L+ GA A G T L AQ Y +I+ L
Sbjct: 369 LDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCL 422
Score = 33.7 bits (77), Expect = 0.14
Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 24/167 (14%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLA----VAMQQGHDRVVAVLLENDTKGKVKLPALH-IA 64
V++ L+S G + T G+TPL A + ++ L+ + VK L +
Sbjct: 381 VIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLL 440
Query: 65 AKKDDCKA------AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+ DD A + D D T +H H I + N
Sbjct: 441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCA--------IIERYNNAV 492
Query: 119 QAKHNITPLHVA-CKWGKVAMV----ELLISKGANIEAKTRDGLTPL 160
+TPLHV+ +V L+S NI T++G+TPL
Sbjct: 493 CETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPL 539
Score = 30.3 bits (68), Expect = 1.4
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 10 VVRYLLSKGGNQTLATEDGFTPLAVAMQQG---HDRVVAVLLENDTKGKVK-LPA-LHI- 63
V++ ++ GG+ + +G +P+ + + + + +E+ KVK +P LH
Sbjct: 229 VIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSY 288
Query: 64 --AAKKDDCKAAALLLENDHSPDVKSNSHFTPLH--IAAHYGNTNIAELLIQKHANVNNQ 119
A+ D L+ K ++ T LH I H +T+I +LL + ++N
Sbjct: 289 ITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEP 348
Query: 120 AKHNITPLHVACKWGKVA--------------MVELLISKGANIEAKTRDGLTPLH---C 162
T LH V +++ LIS GA+I A G TPL C
Sbjct: 349 DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYIC 408
Query: 163 AARS-GHDNVIDILI 176
A++ + ++ID LI
Sbjct: 409 TAQNYMYYDIIDCLI 423
Score = 28.0 bits (62), Expect = 8.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 188 AGFTPLHIA--SHFGQLNMV----RYLVENGANVNATTNLGYTPL 226
+G TPLH++ SH N+V YL+ N+N T G TPL
Sbjct: 496 SGMTPLHVSIISH-TNANIVMDSFVYLLSIQYNINIPTKNGVTPL 539
Score = 28.0 bits (62), Expect = 9.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 183 YSKTKAGFTPLHIASHFGQLN----MVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
Y K G+ LH ++ G + ++ +L NG NVN N TPLH G V
Sbjct: 171 YVCKKTGYGILH--AYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNV 225
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
G TPLH+A+ G L +V+ L+E GA+VNA
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTR 154
TPLH+A + G + +V+LL+ GA++ A+ +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVN 117
TPLH+AA G+ + +LL++ A+VN
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVN 29
Score = 41.4 bits (98), Expect = 1e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
DG TPLH AAR+GH V+ +L+E GA + ++ K
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 38.7 bits (91), Expect = 9e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253
G TPLH A++ G + ++ LLL AGA NA
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 29.4 bits (67), Expect = 0.17
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLEN 50
DG TPL +A + GH VV +LLE
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEA 24
Score = 27.5 bits (62), Expect = 0.75
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSN 88
LH+AA+ + LLLE + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 25.6 bits (57), Expect = 4.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1 MAAQENHDGVVRYLLSKGGN 20
+AA+ H VV+ LL G +
Sbjct: 8 LAARNGHLEVVKLLLEAGAD 27
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 50.8 bits (121), Expect = 3e-07
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 88 NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKH-NITPLHVACKWGKVAMVELLISKG 146
NS PL A N + A+LLI+ A+VN A+ ITPL+++ G + +E+L+S G
Sbjct: 68 NSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG 127
Query: 147 ANIEAKTRDGLTPLHCAARSGHDNV 171
A+I +T D +TP+ A ++ +
Sbjct: 128 ADINIQTNDMVTPIELALMICNNFL 152
Score = 36.5 bits (84), Expect = 0.012
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGL----TPLHCAARSGHDNVIDILIEKGAAL 182
L+ + K+ +++ ++ GA+ EA PL A +D+ +LI GA +
Sbjct: 37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV 96
Query: 183 --YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
Y++ +A TPL+I+ G L + L+ GA++N TN TP+ A
Sbjct: 97 NRYAE-EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALM 146
Score = 31.5 bits (71), Expect = 0.50
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 170 NVIDILIEKGA--------ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN- 220
++ID +++ GA + SKT PL A + + L+ GA+VN
Sbjct: 47 DIIDAILKLGADPEAPFPLSENSKT----NPLIYAIDCDNDDAAKLLIRYGADVNRYAEE 102
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
TPL+ + G + +++LL GA N TN T + +A +
Sbjct: 103 AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN 149
Score = 31.1 bits (70), Expect = 0.69
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 96 IAAHYGNTNIAELLIQKHANVNNQAKHN----ITPLHVACKWGKVAMVELLISKGANIEA 151
I HY T+I + +++ A+ + PL A +LLI GA++
Sbjct: 41 IKFHY--TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNR 98
Query: 152 KTRDG-LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204
+ +TPL+ + G ++IL+ GA + +T TP+ +A +
Sbjct: 99 YAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFL 152
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 48.9 bits (116), Expect = 2e-06
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Query: 76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
LL +SP+ + PLHIA+ N I +L+ A+ N K + TPL+
Sbjct: 58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117
Query: 136 --VAMVELLISKGANIEAKT-RDGLTPLHCAARSGHDNVIDILIEKG--AALYSKTKAGF 190
+ + LL+ GA I +G PL A + V ++ G A + K
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNH 176
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ--GRVLIIDLLL 242
H+ S + + + ++++ G + + + G TPLH + V II+LLL
Sbjct: 177 IHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL 230
Score = 38.9 bits (90), Expect = 0.003
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
V L+ G + N T + G PLH AS+ I+ +LL GA PNA +T L
Sbjct: 54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109
Score = 38.5 bits (89), Expect = 0.003
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
+C + + ++ L+ +G + G PLHIAS +V L+ +GA+ NA
Sbjct: 44 YCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK 103
Query: 221 LGYTPLHQASQQGRVLI--IDLLLGAGAQPNATTN 253
TPL+ S +I I+LL+ GA+ N + +
Sbjct: 104 QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVD 138
Score = 35.0 bits (80), Expect = 0.042
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
VE L+ +G + DG PLH A++ ++ ++ +L+ GA + K TPL+ S
Sbjct: 54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS 113
Query: 198 HFGQ--LNMVRYLVENGANVNATTN 220
+ + LV+ GA +N + +
Sbjct: 114 GTDDEVIERINLLVQYGAKINNSVD 138
Score = 35.0 bits (80), Expect = 0.050
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 107 ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS 166
E L+ + + N PLH+A K +V +L++ GA+ A + TPL+ + +
Sbjct: 56 EELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT 115
Query: 167 GHDNV--IDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 223
+ + I++L++ GA + S + G PL +A + + ++ G G
Sbjct: 116 DDEVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGK 174
Query: 224 TPLHQ--ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
+H+ S + I ++ G P+ + G T L+I
Sbjct: 175 NHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHI 214
Score = 33.9 bits (77), Expect = 0.10
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAA 65
V LL +G + +DG PL +A + ++R+VA+LL N + K P +++
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114
Query: 66 KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK---- 121
D+ LL + K N+ T+ +E + +K ++ +A+
Sbjct: 115 TDDEVIERINLLVQYGA---KINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDK 171
Query: 122 --HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLH--CAARSGHDNVIDILIE 177
N H+ K + + ++ G + DG TPLH C+ + ++I++L+
Sbjct: 172 FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL- 230
Query: 178 KGAALYSKTKAGFTPL 193
+ + K G +PL
Sbjct: 231 PSTDVNKQNKFGDSPL 246
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 47.8 bits (114), Expect = 4e-06
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 41/178 (23%)
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA------MVELLISKGA 147
L++ I +LLI A+VN + TPL + ++ +V+LL+ GA
Sbjct: 41 LYLKRKDVKIKIVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGA 99
Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRY 207
+I KT +G++P+ C +Y+ S+ +M+R+
Sbjct: 100 DINLKTFNGVSPIVC------------------FIYN------------SNINNCDMLRF 129
Query: 208 LVENGANVNATTNL-GYTPLHQ--ASQQGRVLIIDLLLGAGAQPNATTN-HGQTALNI 261
L+ G NVN N GY LH S + +I +LL G T+ +G T +NI
Sbjct: 130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI 187
Score = 45.1 bits (107), Expect = 3e-05
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 12/181 (6%)
Query: 75 LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN---ITPLHVAC 131
LL + + DVK++ + LH+ + + I VN K + +TP+++
Sbjct: 130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYL 189
Query: 132 KWG----KVAMVELLISKGANIEAKTRDGLTPLHCAARSG---HDNVIDIL--IEKGAAL 182
+ + +++ LI KG NIE + L + +L I K +
Sbjct: 190 RNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249
Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
K K GF PL I++ YL++ G ++ + G T L A + G + +++ +L
Sbjct: 250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRIL 309
Query: 243 G 243
Sbjct: 310 Q 310
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 40.3 bits (95), Expect = 2e-05
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNA 217
G TPLH+A+ G L +V+ L++ GA++NA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 38.0 bits (89), Expect = 2e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+A + G + +V+LL+ KGA+I A
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVN 117
TPLH+AA GN + +LL+ K A++N
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 37.2 bits (87), Expect = 3e-04
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGA 180
DG TPLH AA +G+ V+ +L++KGA
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGA 26
Score = 30.2 bits (69), Expect = 0.098
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
G TPLH A++ G + ++ LLL GA NA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 26.0 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLEND 51
DG TPL +A + G+ VV +LL+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKG 25
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 38.4 bits (90), Expect = 1e-04
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNA 217
G TPLH+A+ G L +V+ L+E+GA++NA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 36.8 bits (86), Expect = 3e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVN 117
TPLH+AA GN + +LL++ A++N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADIN 29
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEA 151
TPLH+A + G + +V+LL+ GA+I A
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 36.1 bits (84), Expect = 7e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALY 183
DG TPLH AAR+G+ ++ +L+E GA +
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 32.6 bits (75), Expect = 0.011
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
G TPLH A++ G + ++ LLL GA NA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 42.3 bits (99), Expect = 2e-04
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
G T L+ A + G +++V +L+ENGANVNA + GYT L A +G V+
Sbjct: 220 GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVI 268
Score = 31.1 bits (70), Expect = 0.86
Identities = 24/94 (25%), Positives = 37/94 (39%)
Query: 74 ALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW 133
+ END D+ +T + I +L I ++N T L+ A
Sbjct: 172 GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYA 231
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
G + +V L+ GAN+ A +G T L A G
Sbjct: 232 GYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRG 265
Score = 29.2 bits (65), Expect = 3.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
++N G T L++A G + ++ LL GA NA ++G T L++A G +
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSV 267
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 39.5 bits (92), Expect = 5e-04
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 127 LHVACKWGKVAMVELLISKGANIEAK-------TRDGLTPLHCAARSGHDNVID---ILI 176
LH C+ G V +LL K A + R G +H + + + +L+
Sbjct: 21 LHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM 78
Query: 177 EKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGR 234
E GA + K G TPLHIA + + +L G N+ TP + A ++
Sbjct: 79 EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD 138
Query: 235 VLIIDLLLGAGAQ 247
++++L GAQ
Sbjct: 139 AKMMNILRAKGAQ 151
Score = 36.8 bits (85), Expect = 0.004
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI--TPLHVACKWGKVAMVELLISKGA 147
TPLHIA + N +A L + VN + + TP +VAC+ M+ +L +KGA
Sbjct: 94 TPLHIAVYTQNYELATWLCNQ-PGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA 150
Score = 34.1 bits (78), Expect = 0.038
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 102 NTNIAELLIQKHANVNNQAKHNITP--------LHVACKWGKVAMVE---LLISKGANIE 150
N + +LL K+A ++++ ++ + +H+ K E LL+ GA+I
Sbjct: 27 NGGVTDLLAFKNA-ISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN 85
Query: 151 AKTR-DGLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
K R G TPLH A + + + L + G + A TP ++A M+ L
Sbjct: 86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNIL 145
Query: 209 VENGA 213
GA
Sbjct: 146 RAKGA 150
Score = 32.2 bits (73), Expect = 0.16
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 94 LHIAAHYGNTNIAE---LLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISK-GAN 148
+HI ++ + E LL++ A++N + + TPLH+A + L ++ G N
Sbjct: 59 VHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN 118
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
+E TP + A +++IL KGA
Sbjct: 119 MEILNYAFKTPYYVACERHDAKMMNILRAKGA 150
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 38.3 bits (89), Expect = 0.001
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 136 VAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPL 193
V +ELL++ GA+I A+ G T LH AA + + + + L + G L + T
Sbjct: 73 VMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY 132
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLG 222
HIA M+ L NGA + ++G
Sbjct: 133 HIAYKMRDRRMMEILRANGAVCDDPLSIG 161
Score = 33.3 bits (76), Expect = 0.075
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVACKWGKVAMVELLISKGA 147
T LHIAA N +AE L ++ +N Q + T H+A K M+E+L + GA
Sbjct: 96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHE---TAYHIAYKMRDRRMMEILRANGA 152
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 35.0 bits (80), Expect = 0.053
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR-VLIIDLLL 242
K G T LH A + + ++V L+E+G++VN +N GYT + A + R + ++ +LL
Sbjct: 450 KRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506
Score = 31.9 bits (72), Expect = 0.55
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
++N G T LH+A + + ++ LLL +G+ N +N+G T + IA
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIA 492
Score = 29.6 bits (66), Expect = 2.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 158
++N K T LH A ++ K ++V LL+ G+++ ++ +G T
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYT 487
>gnl|CDD|218073 pfam04412, DUF521, Protein of unknown function (DUF521). Family of
hypothetical proteins.
Length = 397
Score = 32.2 bits (74), Expect = 0.35
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 237 IIDLLLGAGAQPNA----TTNHGQTALNIAQKLGYISVIETL--KIVTETTIVTTTVTTI 290
+ +LL G P TT+ + A++ GY+ +E K+VT+T +V + + I
Sbjct: 305 LAELLAGRKKAPGVPLWVTTSRA--VYSKAERAGYVDRLEAAGVKVVTDTCMVVSPI--I 360
Query: 291 EEKYRVVA 298
+ RVV
Sbjct: 361 PKGTRVVM 368
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 31.1 bits (70), Expect = 0.89
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 195 IASHFGQLNMVRYLVENGANVNATTNLGYT 224
I SH +++V +L++NGA++N TT G T
Sbjct: 418 IESH--SVSLVEWLIDNGADINITTKYGST 445
Score = 28.4 bits (63), Expect = 5.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 158
++N KH + L+ + V++VE LI GA+I T+ G T
Sbjct: 402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGST 445
Score = 28.4 bits (63), Expect = 6.2
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 51/166 (30%)
Query: 170 NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN-----MVRYLVENGANV----NATTN 220
NVI +I++GA LY HI +F + + +V Y+++NG V + N
Sbjct: 322 NVIKCMIDEGATLYRFK-------HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIIN 374
Query: 221 L----------------------------------GYTPLHQASQQGRVLIIDLLLGAGA 246
+ G + L+ + V +++ L+ GA
Sbjct: 375 IMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGA 434
Query: 247 QPNATTNHGQTALNIAQKLGYISVIETLKIVTET-TIVTTTVTTIE 291
N TT +G T + I L + + E ++ + I+ + + TIE
Sbjct: 435 DINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE 480
>gnl|CDD|176104 cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of
putative LysR-type transcriptional regulator PAO1-like,
a member of the type 2 periplasmic binding fold protein
superfamily. This family includes the C-terminal
substrate domain of a putative LysR-type transcriptional
regulator from the plant pathogen Pseudomonas aeruginosa
PAO1and its closely related homologs. The LysR-type
transcriptional regulators (LTTRs) are composed of two
functional domains joined by a linker helix involved in
oligomerization: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal substrate-binding domain,
which is structurally homologous to the type 2
periplasmic binding proteins. As also observed in the
periplasmic binding proteins, the C-terminal domain of
the bacterial transcriptional repressor undergoes a
conformational change upon substrate binding which in
turn changes the DNA binding affinity of the repressor.
The genes controlled by the LTTRs have diverse
functional roles including amino acid biosynthesis, CO2
fixation, antibiotic resistance, degradation of aromatic
compounds, nodule formation of N2 fixing bacteria, and
synthesis of virulence factors, to a name a few. The
structural topology of this substrate-binding domain is
most similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis. Besides transport proteins, the PBP2
superfamily includes the substrate-binding domains from
ionotropic glutamate receptors, LysR-like
transcriptional regulators, and unorthodox sensor
proteins involved in signal transduction.
Length = 198
Score = 29.4 bits (67), Expect = 2.0
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
AG TP IA VR LV NG LGY+ L+
Sbjct: 117 AAAGLTP-RIAYRTSSFEAVRSLVANG--------LGYSLLND 150
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 29.6 bits (66), Expect = 2.4
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 60 ALH--IAAKKD-DCKAAALLLENDHSPDVKSNSHFTPLHIAA--HYGNTNIAELLIQKHA 114
ALH ++ K D D K LLL ++N TPL + + Y + I LLI ++
Sbjct: 44 ALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS 103
Query: 115 NVNNQAKHNI 124
N +N+ NI
Sbjct: 104 NASNELTSNI 113
Score = 28.8 bits (64), Expect = 4.7
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 76 LLENDHSPDVKSNSHFTPLHIAAHYGNT----NIAELLIQK--HANVNNQAKHNITPLHV 129
+L+N + D +++++ PLH N N+ +++ H +N+ + +
Sbjct: 365 MLDNGATMDKTTDNNY-PLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNN------- 416
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
G++ M L++S+ N HC D V DIL + +
Sbjct: 417 ----GRLCMYGLILSRFNN---------CGYHCYETILID-VFDILSKYMDDIDMIDNEN 462
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATT-NLGYTPLHQAS--QQGRVLIIDLLL 242
T L+ A + R L+E GA+VN T+ ++ T + ++S ++ + ++DLLL
Sbjct: 463 KTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLL 518
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 29.2 bits (65), Expect = 2.4
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 123 NITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 182
N PLH A +V++L+ G + G T L+ A SG+ + + ++K L
Sbjct: 61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 120
Query: 183 YSKTKAGF-TPLHIASHFGQLNMVRYLVENGANVNATTNLG--YTPLHQASQQGRVLIID 239
K G+ T + A +++V Y + + + +T +L + +H + G V ++
Sbjct: 121 MFYGKTGWKTSFYHAVMLNDVSIVSYFL---SEIPSTFDLAILLSCIHITIKNGHVDMMI 177
Query: 240 LLL 242
LLL
Sbjct: 178 LLL 180
Score = 28.1 bits (62), Expect = 7.1
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G + L+ A + +V L+ GA N N PLHQA+ I+ +LL +G
Sbjct: 30 GHSALYYAIADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSGMDD 87
Query: 249 NATTNHGQTALNIAQKLGYISVIE 272
+ + G TAL A G + ++
Sbjct: 88 SQFDDKGNTALYYAVDSGNMQTVK 111
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 28.9 bits (64), Expect = 2.6
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 41 DRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN--DHSPDVKSNSHF---TPLH 95
D A L D G++ +HIAA+K + + AA ++++ + D+ + T LH
Sbjct: 47 DCHAAALNATDDAGQM---CIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALH 103
Query: 96 IAAHYGNTNIAELLI-QKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
+AAH + ++AE L Q +++ N +P +A VAM+++L
Sbjct: 104 LAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL 151
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 29.1 bits (65), Expect = 3.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
T P + + L+ G +PN T N G L I K G++SV E L+
Sbjct: 395 ERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN-TNNLGLDKLKIQMKRGFVSVDEHLR 453
Query: 276 IVTE 279
++ E
Sbjct: 454 VLRE 457
>gnl|CDD|205018 pfam12683, DUF3798, Protein of unknown function (DUF3798). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 247 and 417 amino
acids in length. Most of the proteins in this family
have an N-terminal lipoprotein attachment site. These
proteins have distant similarity to periplasmic ligand
binding families such as pfam02608, which suggests that
this family have a similar role.
Length = 275
Score = 28.4 bits (64), Expect = 4.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 281 TIVTTTVTTIEEKYRVVAPEAMQEVYMSD 309
IVT TV+ E++YR A EA+ E Y D
Sbjct: 6 GIVTGTVSQSEDEYR--AAEALLEKYGDD 32
>gnl|CDD|131435 TIGR02382, wecD_rffC, TDP-D-fucosamine acetyltransferase. This
model represents the WecD protein (Formerly RffC) for
the biosynthesis of enterobacterial common antigen
(ECA), an outer leaflet, outer membrane glycolipid with
a trisaccharide repeat unit. WecD is a member of the
GNAT family of acetytransferases (pfam00583) [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 191
Score = 28.0 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEA 151
+T L VA + G A + L I GANIE+
Sbjct: 155 RGLTRLRVATQMGNTAALRLYIRSGANIES 184
>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
Provisional.
Length = 373
Score = 27.7 bits (61), Expect = 7.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 56 VKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFT--PLHIAAHYGNTNI 105
+KLP I K+D A ++ + +PD S H T PL+I + N I
Sbjct: 269 LKLPRFSIENKRDIKSIAEMMAPSMFNPDNASFKHMTRDPLYIYKMFQNAKI 320
>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.
Length = 479
Score = 27.9 bits (63), Expect = 7.9
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 120 AKHNITPLHVACKWGKVAMV------------ELLISKGANIEAKTRDGLTPLHCAARSG 167
N+ PL ++G +A+ LI +GA I T D LH ARS
Sbjct: 102 ILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGA-IFQSTSDTEVILHLIARSR 160
Query: 168 HDNVIDILIE-----KGAALYS 184
+ +D I+ +GA YS
Sbjct: 161 KASFLDRFIDALRQVEGA--YS 180
>gnl|CDD|182877 PRK10975, PRK10975, TDP-fucosamine acetyltransferase; Provisional.
Length = 194
Score = 27.6 bits (62), Expect = 8.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEA 151
+T L VA + G +A + L I GANIE+
Sbjct: 158 RGLTRLRVATQMGNLAALRLYIRSGANIES 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,711,414
Number of extensions: 1496623
Number of successful extensions: 1652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1457
Number of HSP's successfully gapped: 178
Length of query: 318
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 221
Effective length of database: 6,635,264
Effective search space: 1466393344
Effective search space used: 1466393344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)