RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4998
(318 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 310 bits (797), Expect = e-104
Identities = 135/318 (42%), Positives = 193/318 (60%), Gaps = 9/318 (2%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+AA+E H V LL K +Q T+ GFTPL VA + G RV +LLE + GK
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
L LH+A ++ LLL SP + + +TPLHIAA +A L+Q +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
N ++ +TPLH+A + G MV LL+SK AN + GLTPLH A+ GH V D+LI
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+ G + + T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRV 296
I+ LLL GA PN ++ G T L IA++LGYISV + LK+VT+ T+ + +K+R+
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD----ETSFVLVSDKHRM 414
Query: 297 VAPEAMQEVYMSDSEDEG 314
PE + E+ + SEDEG
Sbjct: 415 SFPETVDEI-LDVSEDEG 431
Score = 282 bits (725), Expect = 3e-93
Identities = 99/278 (35%), Positives = 148/278 (53%), Gaps = 4/278 (1%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
MAA+ H V +YLL +D TPL A + GH +V +LLEN +
Sbjct: 53 MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
LHIAA++ + LLE + S + FTPLH+AA YG +AELL+++ A+
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
N K+ +TPLHVA + +V+LL+ +G + + +G TPLH AA+ V L+
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+ G + +++ G TPLH+A+ G MV L+ AN N G TPLH +Q+G V
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ D+L+ G +ATT G T L++A G I +++ L
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Score = 275 bits (706), Expect = 2e-90
Identities = 97/278 (34%), Positives = 154/278 (55%), Gaps = 4/278 (1%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+A+ H +V+ LL +G + ++ TPL +A + GH V LL+N + K K
Sbjct: 20 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
LH AA+ LLLEN+ +P++ + + TPLHIAA G+ L++K A+
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
K TPLHVA K+GKV + ELL+ + A+ A ++GLTPLH A + +++ +L+
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+G + +S G+TPLHIA+ Q+ + R L++ G + NA + G TPLH A+Q+G
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
++ LLL A N G T L++ + G++ V + L
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 257 bits (658), Expect = 3e-83
Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 4/263 (1%)
Query: 16 SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCK 71
S G + E G TPL VA GH +V LL+ + LH+AA+ +
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 72 AAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131
A LL+N + K+ TPLH AA G+TN+ +LL++ +AN N TPLH+A
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT 191
+ G V V L+ K A+ T+ G TPLH AA+ G V ++L+E+ A + K G T
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 192 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
PLH+A H L++V+ L+ G + ++ GYTPLH A++Q +V + LL G NA
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 252 TNHGQTALNIAQKLGYISVIETL 274
+ G T L++A + G+ ++ L
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALL 264
Score = 114 bits (288), Expect = 5e-29
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+ AQE H V L+ G T G+TPL VA G+ ++V LL++ + K K+
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL---IQKH 113
LH AA++ LLL+N SP+ S+ TPL IA G ++ ++L +
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 403
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
+ V KH ++ V+ ++ + +
Sbjct: 404 SFVLVSDKHRMSFPET---------VDEILDVSEDEGEEL 434
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 255 bits (655), Expect = 8e-85
Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 10/276 (3%)
Query: 1 MAAQENHDGVVRYLLSKGGN-----QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGK 55
M + +H L+ +G + DG P G + L+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 56 VKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
+H AA + L+ + ++ + H +PLH A G+ + ++L++ A
Sbjct: 61 S---PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
VN TPL AC G V LL+ GA+++ ++ D +P+H AAR GH ++ L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
I G + K TPL++A Q V+ L+E+GA+VN +PLH +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASE 235
Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVI 271
+ LL+ GA A G+ + + ++ +
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271
Score = 168 bits (429), Expect = 8e-51
Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 11/186 (5%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN------DTKG 54
A H V+ LL G T D TPL A G V +LL++ ++
Sbjct: 98 EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL 157
Query: 55 KVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
+H AA++ + L+ + D K + TPL++A + L++ A
Sbjct: 158 AS---PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 174
+VN Q K +PLH + + LL+ GA+ +AK +G P+ +
Sbjct: 215 DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-F 272
Query: 175 LIEKGA 180
L +GA
Sbjct: 273 LEREGA 278
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 244 bits (625), Expect = 2e-79
Identities = 71/289 (24%), Positives = 114/289 (39%), Gaps = 28/289 (9%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
A N + ++ L N + TPL +A R+V +LL++ K K
Sbjct: 32 ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
L LH A + LLL++ + FTPLH AA + LL+ A+
Sbjct: 92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 118 NQAKHNITPLHVACKWGKVAMVEL---------------------LISKGANIEAKTRDG 156
H + + +A + ++ + +
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211
Query: 157 LTPLHCAARSGHDNVIDI---LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
T LHCA S H + L+ KGA + K K TPLH+A+ +++ L ++GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
+NA +LG T LH+A+ G + LLL G+ P+ + G TA +
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320
Score = 234 bits (599), Expect = 2e-75
Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 30/298 (10%)
Query: 7 HDG-VVRYLLSKGGNQTLATEDGFTPLAVAMQQGH-DRVVAVLLEN----DTKGKVKLPA 60
G L L E L A + G+ ++++A+L K
Sbjct: 2 EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH+AA + + LLL++ K PLH A YG+ + ELL++ A VN
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG------------- 167
TPLH A +V + LL+S GA+ G + + A
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 168 --------HDNVIDILIEKGAALYSKTKAGFTPLHIAS---HFGQLNMVRYLVENGANVN 216
+ + + + ++ T LH A H + + L+ GANVN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
TPLH A+++ ++++L GA+ NA + GQTAL+ A G++ L
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Score = 232 bits (593), Expect = 2e-74
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 18/236 (7%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
AA +N V LLS G + TL G + + +A + + +
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------- 181
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAA---HYGNTNIAELLIQKHANVN 117
L AA++ D L + + SH T LH A H +AELL++K ANVN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
+ K +TPLHVA + ++E+L GA + A G T LH AA +GH +L+
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301
Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
G+ + GFT + + V+ ++ + + L +AS+ G
Sbjct: 302 YGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDV--DYRLLEASKAG 350
Score = 221 bits (565), Expect = 2e-70
Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
A H V LL G FTPL A + V ++LL +
Sbjct: 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
A+ +A + + + + L A + + L
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGH-----------SLLQAAREADLAKVKKTLAL-EIIN 204
Query: 117 NNQAKHNITPLHVACKWG---KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
Q + + T LH A + + ELL+ KGAN+ K +D +TPLH AA H++V++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
+L + GA + + G T LH A+ G L R L+ G++ + + G+T ++
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-- 322
Query: 234 RVLIIDLLLGAGAQPNATTNHGQT 257
+ +L + +
Sbjct: 323 ---AVQQILSESTPMRTSDVDYRL 343
Score = 197 bits (504), Expect = 3e-61
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 22/231 (9%)
Query: 68 DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN-TNIAELLIQKHANVNNQAKHNITP 126
+ K+A L + + L AA GN + LL + N + TP
Sbjct: 2 EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
LH+A + +V +V+LL+ GA++ AK + GL PLH A GH V ++L++ GA + +
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR------------ 234
FTPLH A+ ++ + L+ +GA+ G + + A
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 235 ---------VLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKI 276
+ + L +TAL+ A + + ++
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232
Score = 66.7 bits (164), Expect = 1e-12
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+AA+ H+ V+ L G G T L A GH + +LL
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ 312
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN 102
A + + A +L S ++++ L A+ G+
Sbjct: 313 GFTAAQMGNE-----AVQQILS--ESTPMRTSDVDYRLLEASKAGD 351
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 244 bits (625), Expect = 3e-79
Identities = 41/284 (14%), Positives = 92/284 (32%), Gaps = 30/284 (10%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLL-ENDTKGKVKLP 59
+A N +V L+ E G P ++ + V + KG+
Sbjct: 90 LAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGSHVKHCKGQT--- 140
Query: 60 ALHIAAK--KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLI-----QK 112
ALH + + +L++ SP K + TPL A + N +L++ +
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200
Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
++ K + LH A + + G ++ + + PL+ + R+ +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260
Query: 173 DILIEKGAALY-------------SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
L++K + A+ + +++ L E V +
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL 320
Query: 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
N G + ++ + + L A + + +++
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364
Score = 225 bits (577), Expect = 6e-72
Identities = 55/296 (18%), Positives = 95/296 (32%), Gaps = 34/296 (11%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN--DTKGKVKL 58
+AA++ VR L+ G + T+ G T L +A + G L
Sbjct: 26 VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85
Query: 59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+H+A + L+E P + + E +
Sbjct: 86 KPIHLAVMANKTDLVVALVEG------AKERGQMPESLLNECDEREVNE------IGSHV 133
Query: 119 QAKHNITPLHVACKWGK--VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
+ T LH G + M+++L+ GA+ AK + TPL A + +D+++
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMM 193
Query: 177 E-----KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
+ L K G + LH A ++ VE G +VN N PL+ + +
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR 253
Query: 232 QGRVLIIDLLLGAGAQ-------------PNATTNHGQTALNIAQKLGYISVIETL 274
VL+ LL + A V++ L
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309
Score = 210 bits (538), Expect = 4e-66
Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 25/262 (9%)
Query: 24 ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
+ ++ + VA ++G V L+E + + ALH+A K A L
Sbjct: 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA-- 73
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
P+H+A T++ L++ P + + + +
Sbjct: 74 SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ------MPESLLNECDEREVN 127
Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSG--HDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
E+ K G T LH G + +I IL++ GA+ +K KA TPL A
Sbjct: 128 EI------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181
Query: 198 HFGQLNMVRYLVE-----NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
F + +++ + ++ G + LH A + + G N
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED 241
Query: 253 NHGQTALNIAQKLGYISVIETL 274
N L ++ + + + + L
Sbjct: 242 NEHTVPLYLSVRAAMVLLTKEL 263
Score = 183 bits (467), Expect = 2e-55
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 16/193 (8%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ + +H+AA G T+ LI+ + Q + T LH+ACK+G V + L
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA 73
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
S G G P+H A + +++ L+E + G P + + +
Sbjct: 74 SVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLNECDERE 125
Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVL--IIDLLLGAGAQPNATTNHGQTALNI 261
+ + G T LH G +I +L+ GA P A +T L
Sbjct: 126 VN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179
Query: 262 AQKLGYISVIETL 274
A + ++ +
Sbjct: 180 AMEFRNREALDLM 192
Score = 126 bits (318), Expect = 9e-34
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 141 LLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG 200
+ N + + +H AAR G + + LIE G + + + G T LH+A FG
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
++ +YL G + G P+H A + ++ L+ GQ +
Sbjct: 65 CVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAK------ERGQMPES 116
Query: 261 IAQKLGYISVIE 272
+ + V E
Sbjct: 117 LLNECDEREVNE 128
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 236 bits (605), Expect = 1e-77
Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 8/252 (3%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDHS 82
++P+ A GH + L+ + + LH A +LL++
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
+ + TPL A G+ + LL+Q A+V +P+H A + G V V L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSL 120
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
I+ G NI+ K TPL+ A + + L+E GA + ++ K +PLH +
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASE 179
Query: 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
+ L++ GA+ A G P+ + + L L P+
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCF 237
Query: 263 QKLGYISVIETL 274
+ + + +
Sbjct: 238 GIQQHHKITKLV 249
Score = 231 bits (593), Expect = 9e-76
Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 8/251 (3%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
AA H +R L+S+G + T D +PL A GH V +LL++ +
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 68
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
L A LLL++ S +S+ +P+H AA G+ LI N+
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNI 127
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
+++ H TPL++AC+ + A V+ L+ GA++ + + +PLH AR+ + + +L+
Sbjct: 128 DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLM 186
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+ GA +K G P+ + L + +E + Q
Sbjct: 187 DFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHK 244
Query: 237 IIDLLLGAGAQ 247
I L+L +
Sbjct: 245 ITKLVLPEDLK 255
Score = 28.9 bits (66), Expect = 1.9
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTL 23
+ H + + +L + Q L
Sbjct: 236 CFGIQQHHKITKLVLPEDLKQFL 258
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 237 bits (606), Expect = 3e-76
Identities = 60/300 (20%), Positives = 111/300 (37%), Gaps = 27/300 (9%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE---NDTKGKVK 57
+D + + + T + L G + + N +
Sbjct: 67 QGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN 125
Query: 58 LPALHIAAKKDDCKAAALLLENDHS--------PDVKSNSHFTPLHIAAHYGNTNIAELL 109
LH A + + L+ ++ + TPL +A + L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185
Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK---GANIEAKTRDGLTPLHCAARS 166
++ A+ K + LH A M+ +++ +IE R+G+T L A +
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245
Query: 167 GHDNVIDI---LIEKGA--------ALYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGAN 214
+ + L+EKGA S+ G T LH A+ + +V+YLV E G+N
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ G TP+ A+Q+GR+ ++ L+ GA A TA +AQ + ++++
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 202 bits (515), Expect = 1e-62
Identities = 53/281 (18%), Positives = 97/281 (34%), Gaps = 29/281 (10%)
Query: 16 SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAAL 75
K + L A G+ + L++ + +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL-----YPNPQGYGNGNDFLGDF 79
Query: 76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
N P LH A G+ I E + ++ N+ +HN T LH
Sbjct: 80 NHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSS 137
Query: 136 VAMVELLI--------SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
E LI + GA++ A D TPL A + ++ L++ GA K
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 197
Query: 188 AGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLHQASQQG---RVLIIDLL 241
+ + LH A+ M+ Y++ + ++ G T L + +V LL
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257
Query: 242 LGAGAQPN--------ATTNHGQTALNIAQKLGYISVIETL 274
+ GA+ + + G+TAL+ A ++ + +++ L
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298
Score = 181 bits (462), Expect = 1e-54
Identities = 42/229 (18%), Positives = 70/229 (30%), Gaps = 22/229 (9%)
Query: 59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+L A+ K + P GN + +
Sbjct: 39 HSLLEASYDGYIKRQRNE---------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI-- 176
+ LH G A+ E + + NI R T LH A + + LI
Sbjct: 90 PEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVH 147
Query: 177 ------EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
GA + + TPL +A + +V YL++ GA+ + LHQA+
Sbjct: 148 EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA 207
Query: 231 QQGRVLIIDLLL---GAGAQPNATTNHGQTALNIAQKLGYISVIETLKI 276
++ +L +G TAL I + + K+
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256
Score = 179 bits (457), Expect = 5e-54
Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 27/242 (11%)
Query: 1 MAAQENHDGVV--------RYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-- 50
A + + ++ G + D TPL +A+ R+VA L++
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190
Query: 51 --DTKGKVKLPALHIAAKKDDCKAAALLLENDHS---PDVKSNSHFTPLHIAAHYGNTN- 104
K + ALH AA D +L + + + T L I AH +
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250
Query: 105 --IAELLIQKHANVNNQAKHNI--------TPLHVACKWGKVAMVELLIS-KGANIEAKT 153
A+LL++K A V+ T LH A + + +V+ L+ KG+N + +
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
DG TP+ AA+ G V+ LI++GA++ + T +A N+V
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Query: 214 NV 215
Sbjct: 371 ER 372
Score = 110 bits (277), Expect = 6e-28
Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 1 MAAQENHDGVVRYLLSK---GGNQTLATEDGFTPLAVAMQQGHDRVVAV---LLEN---- 50
AA G++ Y+L+ G+ +G T L + VA L+E
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Query: 51 --------DTKGKVKLPALHIAAKKDDCKAAALLL-ENDHSPDVKSNSHFTPLHIAAHYG 101
D++ ALH AA+ + L+ E + D + TP+ +AA G
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324
Query: 102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
+ LIQ+ A+V + T +A +V++ E
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 229 bits (586), Expect = 2e-74
Identities = 60/272 (22%), Positives = 95/272 (34%), Gaps = 22/272 (8%)
Query: 25 TEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLL 77
TEDG T L +A+ H+ + LL D + + ALH+AA + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 78 ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA-------------KHNI 124
V T LH+A A +L+Q + A +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 125 TPLHVACKW-GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
P V + + +EA+ DG TPLH A ++ +L + GA L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 184 SKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
G TPLH+A +++ L++ GA+ A G TPL A + ++ LL
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245
Query: 243 GAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
GA + + + +
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277
Score = 211 bits (539), Expect = 2e-67
Identities = 50/244 (20%), Positives = 79/244 (32%), Gaps = 18/244 (7%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA V L + G +A G T L +A + VLL+
Sbjct: 51 LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN-IAELLIQKHANVNNQ 119
++ S D ++ P + + N + +
Sbjct: 111 TYLT----------------QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEK 178
TPLHVA MV LL GA++ G TPLH A + +V+++L++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
GA ++ G TPL A + R L +GA +P +
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Query: 239 DLLL 242
D
Sbjct: 275 DEGD 278
Score = 179 bits (456), Expect = 7e-55
Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 18/207 (8%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHAN---VNNQAKHNITPLHVACKWGKVAMVELL 142
+ T LH+A + + + L+ A ++ Q T LH+A G+ + VE L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP---------- 192
+ GA + R G T LH A R +L++ + +
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 193 ----LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
+ + + + A G+TPLH A ++ LL AGA
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 249 NATT-NHGQTALNIAQKLGYISVIETL 274
N G+T L++A + SV+E L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELL 211
Score = 119 bits (300), Expect = 6e-32
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS---KTKAGFTPLHIASHFGQLNMV 205
T DG T LH A H+ +D L+ A + G T LH+A+ G+ + V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
L GA V G+T LH A + +LL +
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Score = 27.9 bits (63), Expect = 4.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 249 NATTNHGQTALNIAQKLGYISVIETL 274
T G TAL++A + ++ L
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFL 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 227 bits (582), Expect = 2e-73
Identities = 67/279 (24%), Positives = 109/279 (39%), Gaps = 11/279 (3%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+ + + + K + +DG LA A G V LLE +
Sbjct: 14 LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVD 72
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
L ALH A D+ L+EN + + N + PLH AA G +IAE LI + A+V
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
TPL +A + +++ +++ D R + L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLN 186
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
K+G T LH+A+ G +++ L++ +VN G+TPLH A+ G+
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
+L+ A GQTA ++A + + E K
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285
Score = 221 bits (566), Expect = 3e-71
Identities = 58/258 (22%), Positives = 92/258 (35%), Gaps = 12/258 (4%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
A V LL +G + A DG T L A + +V L+EN +
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH-ANV 116
LH AA A L+ ++ TPL IA + + + + ++
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
+ + L S N + G T LH AA G+ V+ +LI
Sbjct: 167 E-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+ + K G+TPLH A+H+G+ R LVEN ++ A +G T A +
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279
Query: 237 IIDLLLGAGAQPNATTNH 254
+ +L +
Sbjct: 280 LEELQKKQNLLHSEKREK 297
Score = 211 bits (539), Expect = 4e-67
Identities = 54/251 (21%), Positives = 87/251 (34%), Gaps = 9/251 (3%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP---ALHIAAKKDDCKAAALLLENDHSP 83
+ G + + + K KVK A D + LLE
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI 66
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ + T LH A N ++ + L++ AN+N PLH A G + + E LI
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
S+GA++ A +G TPL A + ++ + + +
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRD 180
Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
++L N G T LH A+ +G ++ LL+ A N G T L+ A
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Query: 264 KLGYISVIETL 274
G L
Sbjct: 241 HWGKEEACRIL 251
Score = 160 bits (407), Expect = 2e-47
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 1/159 (0%)
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+ + G +E + K + K DG A SG + L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
+E+GA + G T LH A ++MV++LVENGAN+N N G+ PLH A+ G +
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
I + L+ GA A + G T L+IA++ +++
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 223 bits (570), Expect = 1e-72
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 1/216 (0%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LH AA+ +L++ + D S TPL AA + + LI+ A V+ +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
T LH+A K G +V+ L+S G ++ + G TP+ A H +++ +L+ K
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
G+ + + LH A+ G +++ L+ +++A G +PLH A+++ R +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193
Query: 239 DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L L + G+T L A + +
Sbjct: 194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Score = 221 bits (565), Expect = 9e-72
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 5/227 (2%)
Query: 25 TEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEND 80
++ +PL A + GH + +L++ DT + + L AA+ + +A L++
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 81 HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMV 139
D K T LH+AA G+ + + L+ +VN Q TP+ A ++ V +V
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF 199
+LL+SKG++I + + LH AA SG ++ +IL+ L++ G +PLHIA+
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
+ + V + ++V G TPL AS +V + A
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 214 bits (547), Expect = 4e-69
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 1/192 (0%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
++ + +PLH AA G+ +I +L+Q AN++ ++ TPL A + + V+ LI
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQL 202
GA ++ K +G T LH AA+ GH V+ L+ G + + G+TP+ A+ + +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
++V+ L+ G+++N N LH A+ G V I ++LL A +A HG + L+IA
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Query: 263 QKLGYISVIETL 274
+ +
Sbjct: 185 ARENRYDCVVLF 196
Score = 203 bits (520), Expect = 5e-65
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 5/219 (2%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
AA+ H + L+ G N +ED TPL A + H V L++ D K
Sbjct: 17 AAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE 76
Query: 57 KLPALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
LH+AAKK + LL N + + + +TP+ A Y + ++ +LL+ K ++
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+N + LH A G V + E+L++ ++ A G +PLH AAR + + +
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+ + + + K K G TPL AS Q+ + + +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 179 bits (457), Expect = 1e-55
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 1/163 (0%)
Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
H N + ++ +PLH A + G V + +L+ GANI+ + D TPL AA + H +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQ 231
LI+ GA + K G T LH+A+ G +V+YL+ NG +VN + G+TP+ A++
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
V ++ LLL G+ N N L+ A G + + E L
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 222 bits (569), Expect = 2e-72
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 60 ALHIAAKKDDCKAAALLLENDHS----PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
LHIA + + A L+ D+ +N TPLH+A ++ LL+ A+
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGA----NIEAKTRDGLTPLHCAARSGHDNV 171
+H T H+AC+ + L+ A ++EA+ DGLT LH A +
Sbjct: 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 172 IDILIEKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
+ +L+E+GA + + K+G +PL A L+MV+ L+++GANVNA G + LH AS
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 231 QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+G + ++ L+ +GA + H T L +A+ I ++
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235
Score = 216 bits (553), Expect = 6e-70
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 13/236 (5%)
Query: 24 ATEDGFTPLAVAMQQGHDRVVAVLLEN--------DTKGKVKLPALHIAAKKDDCKAAAL 75
A EDG TPL +A+ QG+ V L+ D ++ LH+A L
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVAC 131
L+ SP T H+A + + L+ A ++ + +T LHVA
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 132 KWGKVAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF 190
V+LL+ +GA+I+A + G +PL A + +++ +L++ GA + ++ +G
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
+ LH AS G L +VR LV +GA+ + TPL A + + I+ A
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 162 bits (412), Expect = 9e-49
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLIS----KGANIEAKTRDGLTPLHCAARSGHDNV 171
+ TPLH+A G + V L++ G ++ TPLH A + +V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA----NVNATTNLGYTPLH 227
+ +L+ GA+ + + G T H+A +R L+++ A ++ A G T LH
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 228 QASQQGRVLIIDLLLGAGAQPNAT-TNHGQTALNIAQKLGYISVIETL 274
A + LLL GA +A G++ L A + +S+++ L
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 47.4 bits (114), Expect = 2e-06
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
A+ +VR L+ G + +L TPL VA + ++
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 221 bits (567), Expect = 5e-72
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 7/232 (3%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDH 81
+ + A Q G L+E K + LH AA + +
Sbjct: 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66
Query: 82 SPDVKSNSH-FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVE 140
D TPLH A G+ ++ L++ A+ + + +H+A ++G ++V
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 141 LLISKGANIEAKTRDGLTPLHCAARSGHD-NVIDILIEKGAALYSKTKA-GFTPLHIASH 198
LI+KG +++ ++G+TPL AA H + +L+ ++ K T LH A
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
G ++ L+E GANV+A G + L A Q+ V +I+ L A
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 221 bits (566), Expect = 6e-72
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 3/218 (1%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
+ A + + L+E + + T LH AA ++ + I K A V+
Sbjct: 12 DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 120 AK-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
N TPLH A + G ++MV L+ GA+ +G + +H AA+ GH +++ LI K
Sbjct: 72 GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 179 GAALYSKTKAGFTPLHIASHFG-QLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVL 236
G + + G TPL A++ ++ R L+ +VN T LH A G
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+I LLL AGA +A G++AL++A++ + +I L
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 206 bits (526), Expect = 6e-66
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 3/194 (1%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ + A YG L++ +V K N+T LH A ++ +V+ I
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62
Query: 144 SKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
SKGA ++ D TPLH A R GH +++ L++ GA G + +H+A+ FG
Sbjct: 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122
Query: 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVL-IIDLLLGAGAQPNATTN-HGQTALN 260
++V YL+ G +V+ G TPL A+ + + LLL N H TAL+
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182
Query: 261 IAQKLGYISVIETL 274
A G +VI L
Sbjct: 183 WAVLAGNTTVISLL 196
Score = 179 bits (457), Expect = 2e-55
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 32/220 (14%)
Query: 1 MAAQENHDGVVRYLLSKGGNQ-TLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
AA N +V+Y +SKG L + TPL A +QGH +V L++
Sbjct: 48 WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD------ 101
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
P + + +H+AA +G+T+I LI K +V+
Sbjct: 102 -----------------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 120 AKHNITPLHVACKWG-KVAMVELLISKGANIEAKTR-DGLTPLHCAARSGHDNVIDILIE 177
++ +TPL A V LL++ ++ + T LH A +G+ VI +L+E
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
GA + ++ G + L +A + M+ +L E
Sbjct: 199 AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 174 bits (445), Expect = 9e-54
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 174
++ + ++ + A ++G L+ G ++ ++ +T LH AA + +++
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 175 LIEKGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
I KGA + TPLH A+ G L+MV L++ GA+ + G + +H A+Q G
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120
Query: 234 RVLIIDLLLGAGAQPNATTNHGQTALNIA 262
I+ L+ G + +G T L A
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Score = 134 bits (340), Expect = 4e-38
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
A ++ H +V L+ G + +L +G + + +A Q GH +VA L+ D +
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 58 LPALHIAAKKDDCKAAA-LLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAELLIQKHAN 115
+ L AA + LLL + S ++ H T LH A GNT + LL++ AN
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
V+ Q + L +A + V M+ L
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 223 bits (570), Expect = 6e-72
Identities = 72/270 (26%), Positives = 114/270 (42%), Gaps = 21/270 (7%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATED-GFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
A Q +V+ LL G N E+ G+TPL A+Q + +V +LL + + K
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
+AA K L L + FT AA YG + L ++ ANV
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 117 NNQAKHNI----------TPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAAR 165
N + K T L A + G V ++++L+ + GA++ A G L A
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 166 SGHDN----VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTN 220
S D+ + +L++ GA + + + G TPL +A L +V+ L+E +N T +
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
G T L A + I +LL GA +
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 220 bits (564), Expect = 5e-71
Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 21/272 (7%)
Query: 24 ATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLE 78
A + L A+Q +V LLE N + + LH A + LLL
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 79 NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
+ P ++ + TP +AA G+ + +L + K A+VN + T A +GKV
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 139 VELLISKGANIEAK----------TRDGLTPLHCAARSGHDNVIDILI-EKGAALYSKTK 187
++ L +GAN+ + + G T L AA GH V+ IL+ E GA + +
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 188 AGFTPLHIASHFGQLN----MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
G L A + + L+++GA+VN G TPL A ++ + ++ LL
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 244 -AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ N T + G+TAL +A +L + E L
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Score = 191 bits (489), Expect = 1e-59
Identities = 50/237 (21%), Positives = 86/237 (36%), Gaps = 20/237 (8%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
A Q + + +V LL G + L ++G TP +A G +++ + L +
Sbjct: 45 NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY 104
Query: 57 KLPALHIAAKKDDCKAAALLLE----------NDHSPDVKSNSHFTPLHIAAHYGNTNIA 106
A AA KA L + + T L AA G+ +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 107 ELLIQKH-ANVNNQAKHNITPLHVACKWGKV----AMVELLISKGANIEAKTRDGLTPLH 161
++L+ + A+VN L A A+ LL+ GA++ + G TPL
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224
Query: 162 CAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
A H ++ L+E+ + G T L +A + L + GA+ +
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 121 bits (307), Expect = 8e-33
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 2 AAQENHDGVVRYLLSKGGN----------QTLATEDGFTPLAVAMQQGHDRVVAVLLEN- 50
AA +++L +G N Q + G T L A ++GH V+ +LL+
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 51 ----DTKGKVKLPALHIAAK---KDDCKAAA-LLLENDHSPDVKSNSHFTPLHIAAHYGN 102
+ + AL A D +A LLL++ +V+ TPL +A +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 103 TNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
+ + L+++ +N+ T L +A + + ELL +GA+ +
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 218 bits (559), Expect = 3e-70
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 7/217 (3%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L K L + + + A N + L+ A N
Sbjct: 3 DLSRINTWKS-KQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-- 58
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
N PLH A +V++L+ G + G T L+ A SG+ + + ++K
Sbjct: 59 LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118
Query: 180 AALYSKTKAGF-TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
L K G+ T + A +++V Y + + + +H + G V ++
Sbjct: 119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMM 177
Query: 239 DLLLGAGAQPNATTNHGQT-ALNIAQKLGYISVIETL 274
LLL N + + +A I +++ L
Sbjct: 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214
Score = 214 bits (548), Expect = 1e-68
Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 13/277 (4%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN--DTKGKVKLP 59
++ L + A G + A+ + R+V LL
Sbjct: 6 RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF 64
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LH AA +D K +LL + + T L+ A GN +L ++K+ +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124
Query: 120 AKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
K T + A V++V +S+ + L+ +H ++GH +++ +L++
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDY 183
Query: 179 GAALYSKTKAGFTP-LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 237
+ + F P + +A + M++ L + N+ + + I
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEI 236
Query: 238 IDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+++ + + + + KL I
Sbjct: 237 AKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKE 273
Score = 197 bits (504), Expect = 5e-62
Identities = 32/247 (12%), Positives = 83/247 (33%), Gaps = 16/247 (6%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
A +N+ +V LL+ G + + PL A ++V +LL +
Sbjct: 38 AIADNNVRLVCTLLNAGALKN--LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHF-TPLHIAAHYGNTNIAELLIQKHANV 116
AL+ A + + L ++ + + + T + A + +I + + +
Sbjct: 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS- 154
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP-LHCAARSGHDNVIDIL 175
++ +H+ K G V M+ LL+ + P + A + ++ L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
+ +Y + + + ++E + + + + ++ +
Sbjct: 215 FKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267
Query: 236 LIIDLLL 242
+ + L
Sbjct: 268 ISKNKEL 274
Score = 135 bits (342), Expect = 5e-38
Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 12/182 (6%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGF-TPLAVAMQQGHDRVVAVLLE---NDTKGKV 56
A + V+ + K + G+ T A+ +V+ L + +
Sbjct: 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI 160
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP-LHIAAHYGNTNIAELLIQKHAN 115
L +HI K LLL+ S + ++ F P + +A + + + L + N
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+ + + +++I K ++ + + + +
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKE 273
Query: 176 IE 177
+
Sbjct: 274 LR 275
Score = 102 bits (257), Expect = 1e-25
Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 17/159 (10%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTK 53
A N +V Y LS+ + T + + + ++ GH ++ +LL+ ++
Sbjct: 135 HAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193
Query: 54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH 113
+ P + +A D + L + D + + + IA+++I+KH
Sbjct: 194 LFI--PDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKH 244
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
+ + + K ++ + K
Sbjct: 245 VEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVK 283
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 216 bits (553), Expect = 9e-70
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 15/239 (6%)
Query: 51 DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV--------------KSNSHFTPLHI 96
+ +G L IA+ E + +P V + T LH+
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRD 155
AA Y ++ A+ L++ A+ N Q TPLH A + ++LI A +++A+ D
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
G TPL AAR + +++ LI A + + G + LH A+ ++ L++NGAN
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ N TPL A+++G +LL A + T + + +IAQ+ + ++ L
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 207 bits (529), Expect = 4e-66
Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 19/244 (7%)
Query: 25 TEDGFTPL-------------AVAMQQGHDRVVAVLLEN-----DTKGKVKLPALHIAAK 66
DGFTPL ++ V++ + + + ALH+AA+
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 67 KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNIT 125
AA LLE +++ N TPLH A + ++LI+ A +++ + T
Sbjct: 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 185
PL +A + M+E LI+ A++ A G + LH AA + + +L++ GA +
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186
Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
TPL +A+ G + L+++ AN + T ++ P A ++ I+ LL
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246
Query: 246 AQPN 249
+
Sbjct: 247 HHHH 250
Score = 198 bits (505), Expect = 1e-62
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 6/221 (2%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+E+ V+ + +G + T G T L +A + LLE + + +
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM 89
Query: 57 KLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
LH A D +L+ N + D + + TPL +AA + E LI HA+
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
VN + LH A V +L+ GAN + + TPL AAR G +L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
++ A P IA ++VR L + +
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 196 bits (500), Expect = 7e-62
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 15/207 (7%)
Query: 83 PDVKSNSHFTPLHIAAHYGNTN-------------IAELLIQKHANVNNQA-KHNITPLH 128
+V+ FTPL IA+ G + I + A+++NQ + T LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 129 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTK 187
+A ++ + + L+ A+ + G TPLH A + V ILI A L ++
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
G TPL +A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 248 PNATTNHGQTALNIAQKLGYISVIETL 274
+ N +T L +A + G + L
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVL 209
Score = 122 bits (308), Expect = 2e-33
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 148 NIEAKTRDGLTPLHCAARSG-------------HDNVIDILIEKGAALY-SKTKAGFTPL 193
++ + DG TPL A+ SG VI I +GA+L+ + G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ-PNATT 252
H+A+ + + + + L+E A+ N N+G TPLH A + +L+ A +A
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 253 NHGQTALNIAQKLGYISVIETL 274
+ G T L +A +L ++E L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDL 143
Score = 99.5 bits (249), Expect = 9e-25
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
AA+ +G++ L++ + + G + L A + VLL+N D + +
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
L +AA++ + A +LL++ + D+ + P IA + +I LL +H + +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Query: 118 NQ 119
+
Sbjct: 251 HH 252
Score = 43.6 bits (104), Expect = 3e-05
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
+AA+E + LL N+ + P +A ++ H +V +L
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 213 bits (545), Expect = 6e-69
Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 8/211 (3%)
Query: 60 ALHIAAKKDDCKAAA-LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
LH A +++ LL K PLH + + I L+ K NVN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 119 QAKHN---ITPLHVACKWGKVAMVELLISK--GANIEAKTRDGLTPLHCAARSGHDNVID 173
+ TP H+AC G + +V+ L + ++ T G+T LH A V
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQ 232
LIE GA++ K K PLH A+ G L ++ L G + VN G+TPL A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 233 GRVLIIDLLLGA-GAQPNATTNHGQTALNIA 262
G LL+ GA+ + N G A ++A
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 199 bits (509), Expect = 2e-63
Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 15/227 (6%)
Query: 28 GFTPLAVAMQQGHDRVVAVLLEN-----DTKGKVKLPALHIAAKKDDCKAAALLLEND-- 80
PL A + V LL + K + LH + + + LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 81 -HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH--ANVNNQAKHNITPLHVACKWGKVA 137
+ D +S +TP HIA GN + + L + ++N +T LH+A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIA 196
+ + LI GA++ K + PLH AA G +I++L G + + + K G+TPL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 197 SHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
G + LVE GA + N G A + + L
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225
Score = 195 bits (499), Expect = 5e-62
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Query: 91 FTPLHIAAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI 149
PLH A + ELL K + + + + PLH + + + L+SK N+
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 150 ---EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNM 204
+ G TP H A G+ V+ L ++ L T G T LH+A +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG-AQPNATTNHGQTALNIAQ 263
++L+ENGA+V PLH+A+ G + +I+LL G G + N G T L A
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 264 KLGYISVIETL 274
G+ L
Sbjct: 183 AEGHGDAAVLL 193
Score = 92.9 bits (232), Expect = 1e-22
Identities = 30/179 (16%), Positives = 46/179 (25%), Gaps = 67/179 (37%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A + V ++L+ G + + + P
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIP----------------------------- 143
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN-VNNQ 119
LH AA G+ + ELL + VN Q
Sbjct: 144 LHRAA---------------------------------SVGSLKLIELLCGLGKSAVNWQ 170
Query: 120 AKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
K TPL A G LL+ K GA + G A ++ V +
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 51.3 bits (124), Expect = 6e-08
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 221 LGYTPLHQASQQGRVLII-DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ PLHQA + + +LL + G+ L+ + + L
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL 55
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 213 bits (544), Expect = 7e-69
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 1/193 (0%)
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
+ + T LH+AA Y ++ A+ L++ A+ N Q TPLH A + ++L
Sbjct: 18 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77
Query: 143 ISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
I A +++A+ DG TPL AAR + +++ LI A + + G + LH A+
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
++ L++NGAN + N TPL A+++G +LL A + T + + +I
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Query: 262 AQKLGYISVIETL 274
AQ+ + ++ L
Sbjct: 198 AQERMHHDIVRLL 210
Score = 211 bits (539), Expect = 4e-68
Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 32/252 (12%)
Query: 6 NHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIA 64
+ V+ + +G + T G T L H+A
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETAL-----------------------------HLA 32
Query: 65 AKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHN 123
A+ AA LLE +++ N TPLH A + ++LI+ A +++ +
Sbjct: 33 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92
Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
TPL +A + M+E LI+ A++ A G + LH AA + + +L++ GA
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ TPL +A+ G + L+++ AN + T ++ P A ++ I+ LL
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Query: 244 AGAQPNATTNHG 255
+ HG
Sbjct: 213 YNLVRS-PQLHG 223
Score = 147 bits (374), Expect = 2e-43
Identities = 45/228 (19%), Positives = 63/228 (27%), Gaps = 70/228 (30%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLA-TEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
A + GV + L+ A DG TP
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTP---------------------------- 95
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L +AA+ + E LI HA+VN
Sbjct: 96 -LILAAR---------------------------------LAVEGMLEDLINSHADVNAV 121
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
+ LH A V +L+ GAN + + TPL AAR G +L++
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH 227
A P IA ++VR L E + LH
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 210 bits (536), Expect = 2e-67
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 11/224 (4%)
Query: 60 ALHIAAKKDDCKAAA----LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
LH+A ++ + + + ++N TPLH+A IAE L+ +
Sbjct: 11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHD 169
+ TPLH+AC+ G +A V +L ++A +G T LH A+ G+
Sbjct: 71 PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130
Query: 170 NVIDILIEKGAALYSKTKA-GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
++++L+ GA + ++ G T LH+A ++V L++ GA+VN T GY+P
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
+ I L + + + + + E
Sbjct: 191 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 205 bits (523), Expect = 2e-65
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 11/200 (5%)
Query: 86 KSNSHFTPLHIAAHYGNTN----IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+ + LH+A + + + A +N Q TPLH+A + + E
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA------ALYSKTKAGFTPLHI 195
L+ G + E + G TPLH A G + +L + L + G T LH+
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 196 ASHFGQLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
AS G L +V LV GA+VNA G T LH A ++ LLL GA N T
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 255 GQTALNIAQKLGYISVIETL 274
G + + + + L
Sbjct: 184 GYSPYQLTWGRPSTRIQQQL 203
Score = 142 bits (361), Expect = 3e-41
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 11/184 (5%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP- 59
+A N + LL G + L G TPL +A +QG V VL ++ T +
Sbjct: 51 LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Query: 60 ---------ALHIAAKKDDCKAAALLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAELL 109
LH+A+ LL+ + + + T LH+A N ++ LL
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
++ A+VN +P + + + L + S
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230
Query: 170 NVID 173
+
Sbjct: 231 EFTE 234
Score = 126 bits (318), Expect = 6e-35
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 150 EAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
+ T DG + LH A VI + A L + TPLH+A Q +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP------NATTNHGQTAL 259
L+ G + G TPLH A +QG + + +L + P AT +G T L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 260 NIAQKLGYISVIETL 274
++A GY+ ++E L
Sbjct: 122 HLASIHGYLGIVELL 136
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 202 bits (516), Expect = 2e-65
Identities = 37/162 (22%), Positives = 70/162 (43%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
+H A G I++ +N+ + TPL A G++A+VE L+ GA+ +
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
+ + L A G+ +++ +L++ G + G TPL A H + V+ L+E+
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253
GA+ T+ GY + A G + ++ +
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 183 bits (467), Expect = 6e-58
Identities = 37/161 (22%), Positives = 72/161 (44%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
++H A + + A +E ++ + FTPL AA +G + E L+Q A+
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
K + L +AC G +V++L+ G ++ +G TPL A H + +L+E G
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
A +T +G+ + +A G ++ + + + +
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 181 bits (461), Expect = 4e-57
Identities = 44/153 (28%), Positives = 72/153 (47%)
Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
N +H G++ + I + I +G TPL AA G V++ L++ GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 182 LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
K + L +A G ++V+ L++ G +VN G TPL A V + +L
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 242 LGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L +GA P T+ G ++++A LGY SV + +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 141 bits (358), Expect = 1e-41
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 4/159 (2%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
A + + + + E+GFTPL A G VV LL+N GK
Sbjct: 9 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 68
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
+ AL +A K +LL+ + + TPL A H + ++L++ A+
Sbjct: 69 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD 155
+ + +A G ++ +++ S + ++
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 201 bits (513), Expect = 8e-65
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
+H A G + + ++K N VN + TPL A +G++ V L+ GA+
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
++ + L A+ G+ +++ +L+E+ + G TPL A + V L+
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT 257
GA++ + GYTP+ A G + ++ + +
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 186 bits (475), Expect = 3e-59
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Query: 60 ALHIAAKKDDCKAAALLLEND-HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
++H A + + L + + FTPL A+ +G L++ A+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
AK + L +A G +V LL+ + +I +G TPL A R H ++ L+ +
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 225
GA L ++ +G+TP+ +A G + + + + + + + P
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 172 bits (439), Expect = 1e-53
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 125 TPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
+H G++ ++ + KG N + G TPL A+ G + L+E GA +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
K + L +AS G ++V L+E ++N G TPL A + V ++ LL
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
GA + G T +++A LGY V + +
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 162 bits (412), Expect = 1e-49
Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 30/193 (15%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
A + ++ L KG N E GFTPL A G V LLE
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------ 61
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
P + + + L +A+ G T+I LL+++ ++N
Sbjct: 62 -----------------------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
+ TPL A + V VE L+++GA++ + G TP+ A G+ V ++
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Query: 180 AALYSKTKAGFTP 192
L+ P
Sbjct: 159 LKLFQSNLVPADP 171
Score = 132 bits (334), Expect = 4e-38
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALY-SKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+H A G + + + KG L + GFTPL AS FG++ VR+L+E GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ + L AS G I+ LLL N +G T L A + ++ +E L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 200 bits (512), Expect = 1e-64
Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 87 SNSHFTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISK 145
S + GN L + N +N H +PLH AC+ G+ A+VE+LI +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GA I R TPLH AA GH +++ L++ A + + + G PLH A +GQ +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
LV NGA V+ G P+ +A R L+ + G N
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170
Score = 186 bits (476), Expect = 3e-59
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 60 ALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+ ++ + A L L+N ++ + + F+PLH A G + + E+LI + A +N
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
+ + TPLH+A G +V+ L+ A+I A G PLH A G D V + L+
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
GA + K G P+ A + + + G N+N P +G
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGT 177
Score = 171 bits (437), Expect = 2e-53
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Query: 125 TPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
+ C+ G V L + N + G +PLH A R G V+++LI +GA +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ TPLH+A+ G ++V+ L++ A++NA G PLH A G+ + + L+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
GA + +G+ ++ A+ + E
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERA 157
Score = 118 bits (299), Expect = 9e-33
Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 68/200 (34%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
A +E VV L+ +G + TP
Sbjct: 45 WACREGRSAVVEMLIMRGARINVMNRGDDTP----------------------------- 75
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH+AA +G+ +I + L+Q A++N
Sbjct: 76 LHLAA---------------------------------SHGHRDIVQKLLQYKADINAVN 102
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
+H PLH AC WG+ + E L++ GA + + G P+ A + + + + G
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Query: 181 ALYSKTKAGFTPLHIASHFG 200
L P G
Sbjct: 163 NL------NRIPYKDTFWKG 176
Score = 80.6 bits (200), Expect = 2e-18
Identities = 26/168 (15%), Positives = 39/168 (23%), Gaps = 68/168 (40%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA H +V+ LL + E G P
Sbjct: 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVP----------------------------- 108
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH A +G +AE L+ A V+
Sbjct: 109 LHYAC---------------------------------FWGQDQVAEDLVANGALVSICN 135
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168
K+ P+ A + + E G N+ P G
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGT 177
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 196 bits (500), Expect = 2e-62
Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 7/197 (3%)
Query: 85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLIS 144
+K+ L A + E+L V+ TPL++A + + + LI
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 145 KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLN 203
+GA+I + +P A G ++ +++ L + G L A+ G ++
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 204 MVRYLVENG-ANVNATTNLGYTPLHQA-----SQQGRVLIIDLLLGAGAQPNATTNHGQT 257
V+ L+E+G +++ + GYT L +A Q I+ LL+ GA + N G+T
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Query: 258 ALNIAQKLGYISVIETL 274
A++ A + GY + + L
Sbjct: 181 AMDYANQKGYTEISKIL 197
Score = 182 bits (465), Expect = 3e-57
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
L A ++D K +L + + D TPL+IA H + IA+ LI + A++N
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
Q + +P A G+ ++ ++ ++ R G L AA GH + + +L+E
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 178 KGAA-LYSKTKAGFTPLHIASHF-----GQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
G + + G+T L A ++V+ L+ENGA+ + N G T + A+Q
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
Query: 232 QGRVLIIDLLL 242
+G I +L
Sbjct: 188 KGYTEISKILA 198
Score = 161 bits (411), Expect = 4e-49
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 11/197 (5%)
Query: 25 TEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEND 80
T + L A Q+ +V +L + D L+IA +D + A L++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 81 HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMV 139
+++++ +P A G T I +++ ++N ++ L A + G + V
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122
Query: 140 ELLISKG-ANIEAKTRDGLTPLHCAA-----RSGHDNVIDILIEKGAALYSKTKAGFTPL 193
+LL+ G +I+ + G T L A + +++ +L+E GA K +G T +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182
Query: 194 HIASHFGQLNMVRYLVE 210
A+ G + + L +
Sbjct: 183 DYANQKGYTEISKILAQ 199
Score = 146 bits (371), Expect = 3e-43
Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 11/188 (5%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
A Q + V L +G TPL +A+ + L++ + + +
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
Query: 57 KLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQK-HA 114
A + + A +L++ + + L AA G+ + +LL++
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131
Query: 115 NVNNQAKHNITPLHVACKW-----GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
+++ Q T L A +V+LL+ GA+ K G T + A + G+
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 170 NVIDILIE 177
+ IL +
Sbjct: 192 EISKILAQ 199
Score = 79.0 bits (196), Expect = 1e-17
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 1 MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-----DTKG 54
A + ++ Y+L + G L A ++GH V +LLE+ D +
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 55 KVKLPALHIAAKKDDCKA-----AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL 109
AL A + LL+EN +K NS T + A G T I+++L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Query: 110 IQKH 113
Q +
Sbjct: 198 AQYN 201
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 194 bits (496), Expect = 2e-61
Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 4/180 (2%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
L I V + L + G+ +V+ +I + +
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
+G+T LH A +GH ++ L++ G + + G+TPLH A+ + + ++LVE+
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 212 GANVNATTN---LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
GA V A T + ++G L G + AL +
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD 185
Score = 189 bits (482), Expect = 3e-59
Identities = 42/209 (20%), Positives = 74/209 (35%), Gaps = 7/209 (3%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNS-HFTPLHIAAHYGNTNIAELLIQKHANVNN 118
+L + + K + + H VK N L ++ G ++ + +I + + +
Sbjct: 8 SLPPGKRTNLRKTGSERIA--HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
IT LH A G +V+ L+ G N+ A DG TPLHCAA + V L+E
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 179 GAALYSKTKAG---FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
GAA+++ T + G ++L + L Q
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD 185
Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQK 264
+ + G + + A+
Sbjct: 186 ELP-MKEGDCMTIIHREDEDEIEWWWARL 213
Score = 157 bits (400), Expect = 5e-47
Identities = 33/239 (13%), Positives = 61/239 (25%), Gaps = 38/239 (15%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+ N ++ G
Sbjct: 11 PGKRTNLRKTGSERIAHGMRVK-FNPLPLAL----------------------------- 40
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
L ++ + + ++ P + ++ T LH A G+T I + L+Q NVN
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL---TPLHCAARSGHDNVIDILIE 177
TPLH A V + + L+ GA + A T + G+ L
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT--NLGYTPLHQASQQGR 234
+ K L + ++ G + + A +
Sbjct: 161 VQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 131 bits (332), Expect = 5e-37
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
G L R+ I G + L +S G+ ++V+ ++ +
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ + G T LH A G I+ L+ G NA + G T L+ A + V + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 128 bits (324), Expect = 9e-36
Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 52/237 (21%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
++ E +V+ ++ + + +L ++G T L
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITA-----------------------------L 74
Query: 62 HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN---N 118
H A + L++ + + + +TPLH AA N + + L++ A V
Sbjct: 75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
+ G + L + + + L D ++ +++
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKE 191
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
G + H + + + + GY P + R+
Sbjct: 192 GDCMT------------IIHREDEDEIEWWWARLND-----KEGYVPRNLLGLYPRI 231
Score = 58.0 bits (141), Expect = 4e-10
Identities = 17/167 (10%), Positives = 39/167 (23%), Gaps = 52/167 (31%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDG---FTPLAVAMQQGHDRVVAVLLENDTKGKVK 57
AA N+ V ++L+ G T M++G+ +
Sbjct: 109 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS------------- 155
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
L + + L N EL +++ +
Sbjct: 156 ----------------QFLYGVQEKMGIMNKGVIYALWDYEP---QNDDELPMKEGDCMT 196
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
+ +E ++ + ++G P +
Sbjct: 197 IIHR------------EDEDEIEWWWARLND-----KEGYVPRNLLG 226
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 188 bits (481), Expect = 8e-60
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 6/189 (3%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
+ I + L N + +N TPL VAC G ++ L+
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
+E K +G T L A ++ + + L+ KG+ + +K +G TPL + FG M
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
+L+E+GANVN G TPL AS+ GR I+ LL GA +A G TA A+
Sbjct: 118 YFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIF 177
Query: 266 GYISVIETL 274
G VI+
Sbjct: 178 GRQEVIKIF 186
Score = 185 bits (473), Expect = 1e-58
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
I +K L N + + + TPL +A G N + L++ + ++
Sbjct: 11 VEKIKDEKS-INQNLDFLRN-----YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
T L A K ++ + E L+SKG+N+ K G TPL + G+ + L+E G
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 239
A + + G TPL +AS +G+ +V+ L+E GA+++A G T A GR +I
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Query: 240 LLL 242
+
Sbjct: 185 IFT 187
Score = 164 bits (418), Expect = 2e-50
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 2/188 (1%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV 85
++G + ++ ++ + L + L +A A L+EN +
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRN--YRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
K T L A IAE L+ K +NVN + TPL + +G M L+
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
GAN+ + +G TPL A++ G ++ L+E GA + ++ G T A FG+ ++
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Query: 206 RYLVENGA 213
+ E
Sbjct: 184 KIFTEVRR 191
Score = 144 bits (367), Expect = 1e-42
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
+++ + + +L + + TPL VA G + + L+EN + K
Sbjct: 15 KDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG 68
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
AL A K + A LL + + K S TPL + +G + ++ L++ ANVN
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
++ TPL VA K+G+ +V+ L+ GA+I A+ GLT A G VI I E
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Query: 178 KGAA 181
A
Sbjct: 189 VRRA 192
Score = 142 bits (362), Expect = 6e-42
Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
++ K+ + + ++ L + TPL A G +N ID L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
E L K G T L A +L + L+ G+NVN G TPL + G
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ LL GA N G+T L +A K G +++ L
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 190 bits (484), Expect = 8e-60
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 6/204 (2%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
+ A + + L + ++ T G + V Q
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAEQ 69
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI-EK 178
A+ PLH A K G ++ + + + + G T L+ A GH +++++L +
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
L + K G T LH A+ G ++V+ L+ GA + A+ ++
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL 189
Query: 239 DLLLGAGAQPNATTNHGQTALNIA 262
G A + +
Sbjct: 190 KKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 187 bits (478), Expect = 6e-59
Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 10/215 (4%)
Query: 24 ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
+ G + A+ R L + K L
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----GRTGLIP 62
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
+ ++ S PLH AA GN + + VN K T L+ AC G +V
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 140 ELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
E+L ++ + + + G T LH AA G+ +++ +L+ KGA + +A++
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
++++ A + Y + +
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Score = 180 bits (460), Expect = 3e-56
Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 2/204 (0%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
A L + G+ T+ T +G ++ + + +
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE-QAESIDNP 76
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH-ANVNNQ 119
LH AAK+ + L+N + + T L+ A H G+ +I E+L + +N Q
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
K T LH A G +V+LL++KGA + + + A + +++
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Query: 180 AALYSKTKAGFTPLHIASHFGQLN 203
A + + +
Sbjct: 197 AVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 179 bits (456), Expect = 1e-55
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 6/184 (3%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
+ A + + L + ++ + T G + +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVAE 68
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV-E 210
+ PLH AA+ G+ + + ++ + KAG T L+ A H G ++V L +
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV 270
+N LG T LH A+ +G I+ LLL GA+ + + A ++A S+
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL 188
Query: 271 IETL 274
++
Sbjct: 189 LKKK 192
Score = 142 bits (361), Expect = 2e-41
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 6/159 (3%)
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
K + A + + L + +I T T G +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGL 60
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
+ + ++ PLH A+ G L+ +R ++N VN G T L+ A G
Sbjct: 61 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120
Query: 237 IIDLLLG-AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
I+++L + N G TAL+ A GY +++ L
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
Score = 83.1 bits (206), Expect = 5e-19
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 239
K G + A + + L ++ T++ T + + +GR +I
Sbjct: 3 KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI- 61
Query: 240 LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L+ A K G +S +
Sbjct: 62 ----PSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92
Score = 49.9 bits (120), Expect = 2e-07
Identities = 8/61 (13%), Positives = 14/61 (22%)
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
G + +A D L T+ T G +I +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65
Query: 276 I 276
+
Sbjct: 66 V 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 183 bits (468), Expect = 4e-58
Identities = 52/151 (34%), Positives = 83/151 (54%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
L AA G + +L+ A+VN + TPLH+A G + +VE+L+ GA++ A
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
G+TPL AA GH ++++L++ GA + + G TPLH+A+ FG L +V L++N
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
GA+VNA G T + G + ++L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 182 bits (465), Expect = 1e-57
Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 112 KHANVNNQAKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
+ ++ ++ ++ L A + G+ V +L++ GA++ A+ G TPLH AA +GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
++++L++ GA + + AG TPL +A+ FG L +V L++NGA+VNA G+TPLH A+
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 231 QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
G + I+++LL GA NA G+TA +I+ G + E L
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 160 bits (408), Expect = 4e-49
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L AA+ +L+ N + + S +TPLH+AA G+ I E+L++ A+VN
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
+TPL +A +G + +VE+L+ GA++ A +G TPLH AA GH ++++L++ G
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
A + ++ K G T I+ G ++ L +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 141 bits (358), Expect = 1e-41
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDHS 82
D L A + G D V +L+ N + + LH+AA + +LL+N
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
+ ++ TPL +AA +G+ I E+L++ A+VN TPLH+A +G + +VE+L
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
+ GA++ A+ + G T + +G++++ +IL +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 57.4 bits (140), Expect = 2e-10
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+AA H +V LL G + +G TPL +A GH +V VLL+N + + K
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 57 KLPALHIAAKKDDCKAAALLLEND 80
A I+ + A +L + +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQKLN 169
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 181 bits (461), Expect = 2e-56
Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 29/226 (12%)
Query: 60 ALHIAAKKDDCKAAA-LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV-- 116
L +AAK++D +A + LL + T LHIAA Y N A +L++ +
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 117 ---NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD-------------GLTPL 160
++ T LH+A V +V L+++GA++ A+ G PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR----YLVENGANVN 216
AA G + ++ +LIE GA + ++ G T LHI L+ +
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185
Query: 217 A------TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
N G TP A +G +++ L+ A +H
Sbjct: 186 LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 172 bits (437), Expect = 9e-53
Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 33/229 (14%)
Query: 28 GFTPLAVAMQQGHDRVVAVLLEN-----DTKGKVKLPALHIAAKKDDCKAAALLLEN--- 79
+PL +A ++ + ++ LL+ +G + ALHIAA D+ +AA +L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 80 --DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI------------- 124
+ T LHIA N N+ L+ + A+V+ +A ++
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV----IDILIEKGA 180
PL A G +V LLI GA+I A+ G T LH + ++L+
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 181 ------ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 223
G TP +A G + M ++L++ ++ A + +
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 103 bits (258), Expect = 2e-26
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 19/138 (13%)
Query: 156 GLTPLHCAARSGHDNVID-ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+PL AA+ + +L +G ++ + G T LHIA+ + L L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 215 V-----NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-------------HGQ 256
+ + G T LH A V ++ LL GA +A +G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 257 TALNIAQKLGYISVIETL 274
L+ A +G ++ L
Sbjct: 123 HPLSFAACVGSEEIVRLL 140
Score = 71.1 bits (175), Expect = 1e-14
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 31/128 (24%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA + +VR L+ G + G T L + + Q + +
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN------------ 175
Query: 62 HIAAKKDDCKAAALLLEND------HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
LLL D V +N TP +A GN + + L+QK +
Sbjct: 176 -------------LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Query: 116 VNNQAKHN 123
+ H+
Sbjct: 223 IAAAHHHH 230
Score = 46.1 bits (110), Expect = 4e-06
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 221 LGYTPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ +PL A+++ V + LL G + + G+TAL+IA + L
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 177 bits (452), Expect = 1e-55
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 92 TPLHIAAHYGNTNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
L AA G+ + L N + TPLH A + +V++VE L+ GA++
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
AK + GL PLH A GH V ++L++ GA + FTPLH A+ G+ + + L++
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
+GA+ G TPL G I DLL G A
Sbjct: 130 HGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 172 bits (439), Expect = 8e-54
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVI 172
A N++A L A K G V V+ L + N TPLH AA +V+
Sbjct: 2 AMGNSEAD---RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58
Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
+ L++ GA +++K K G PLH A +G + LV++GA VN +TPLH+A+ +
Sbjct: 59 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118
Query: 233 GRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
G+ I LLL GA P G T L++ + G + + L
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159
Score = 162 bits (413), Expect = 6e-50
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
L AAK D + L S + TPLH AA Y ++ E L+Q A+V+
Sbjct: 11 QLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
+ K + PLH AC +G + ELL+ GA + TPLH AA G + +L++
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
GA K + G TPL + G ++ L + A
Sbjct: 130 HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 139 bits (352), Expect = 9e-41
Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 31/181 (17%)
Query: 1 MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
AA+ V+ L + N TP
Sbjct: 14 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP---------------------------- 45
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LH AA + LL++ K PLH A YG+ +AELL++ A VN
Sbjct: 46 -LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
TPLH A GK + +LL+ GA+ K RDG TPL G ++ D+L
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163
Query: 180 A 180
A
Sbjct: 164 A 164
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 178 bits (454), Expect = 2e-55
Identities = 51/189 (26%), Positives = 89/189 (47%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
S+ ++A + E ++ + + + T LH AC G +VE L+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
G + K G +PLH AA +G D ++ L+ KGA + + + G TPLH A+ + +
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
L+E GAN +A + T +H+A+ +G + ++ +LL A N G T L++A
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 266 GYISVIETL 274
+ + L
Sbjct: 183 ERVEEAKFL 191
Score = 178 bits (452), Expect = 4e-55
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
+ ++A + +L + T LH A G+T I E L+Q VN
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
++ +PLH+A G +V+ L+ KGA++ A ++G TPLH AA + +L+E
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 237
GA +K T +H A+ G L MV L+ A+ N G TPLH A + RV
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 238 IDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L+ GA +T L +A+ G + +I
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222
Score = 166 bits (421), Expect = 2e-50
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 6/220 (2%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+A D + +L+ T +D T L A GH +V LL+ + K
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
LHIAA + LL + + + TPLH AA IA +L++ AN
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
+ + ++ T +H A G + MV +L+ A+ + +G TPLH A L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
+GA++Y + K TPL +A G L ++ + G +
Sbjct: 193 TQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 176 bits (448), Expect = 3e-55
Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
L AA G+ L+Q + NVN Q T L V K G + L+ +GAN +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL 65
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
K R G +H AAR+G + + L+E A + + G PLH+A+ G L +V +LV++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 212 GA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
A NV + G T A GR ++ L+ GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 161 bits (409), Expect = 2e-49
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
L A G + + L+ N+ A+ G T L G+ + L+ +GA
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
K + GF +H A+ G L+ ++ L+E A+VN N G PLH A+++G + +++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 245 GAQ-PNATTNHGQTALNIAQKLGYISVIETL 274
A + G TA ++A+ G V+ +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 159 bits (406), Expect = 6e-49
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L AA + D + LL+N+ + + ++ T L + GN IA L+ + AN + +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK 66
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
+ +H A + G + ++ L+ A++ + +G PLH AA+ GH V++ L++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 180 AA-LYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
A+ + + G T +A +G+ +V + NGA
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 142 bits (360), Expect = 5e-42
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 25 TEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEND 80
E LA A +G + LL+N + + AL + + + A LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 81 HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVE 140
+PD+K + F +H AA G + + L++ A+VN + PLH+A K G + +VE
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 141 LLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
L+ A N+ + G T A G + V+ ++ GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 123 bits (311), Expect = 9e-35
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
L AA G + L++ + ++ G T L + G + R L+ GAN
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ G+ +H A++ G + + LL A N N G L++A K G++ V+E L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Score = 51.2 bits (124), Expect = 3e-08
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 219 TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L A+ +G + + LL NA G+TAL + + G + L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRL 56
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 175 bits (446), Expect = 5e-55
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
L AA G + +L+ A +PLH+A ++G + E+L+ G + +A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
+T+ TPLH AA GH N++++L++ GA + +K T LH A+ +V L++
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLL 241
GA+V+ + T + G + ++L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 169 bits (431), Expect = 8e-53
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
L A + G+ V +L++ GA G +PLH AA+ GH + ++L+ G + +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
+TK TPLH+A+ G N+V L+++GA+VNA L T LH A++ +++LL+
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETLK 275
GA + + +TA +I+ G + E L+
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 157 bits (399), Expect = 6e-48
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
L AA+ +L+ + +PLH+AA YG+ + E+L++ + +
Sbjct: 5 KLLEAARAGQDDEVRILMA--NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
+ K + TPLH+A G +VE+L+ GA++ AK +T LH A H V+++LI+
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
GA +++++K T I+ G ++ L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 139 bits (352), Expect = 7e-41
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 30/175 (17%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
AA+ D VR L++ G T G +P
Sbjct: 8 EAARAGQDDEVRILMANGAPFT-TDWLGTSP----------------------------- 37
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
LH+AA+ +LL S D ++ TPLH+AA G+ NI E+L++ A+VN +
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
+T LH A + +VELLI GA++ +++ T + +G++++ +IL
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 125 bits (316), Expect = 1e-35
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
D L AAR+G D+ + IL+ GA + G +PLH+A+ +G + L+ G +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+A T + TPLH A+ +G I+++LL GA NA TAL+ A + + V+E L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 175 bits (446), Expect = 4e-54
Identities = 42/194 (21%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 75 LLLENDHSPDVKSNSHFTP---LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131
+L SP + P L AA G + + +++ + + + IT LH A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGF 190
++V+ LI+ GAN+ + G TPLHCAA + L++ GAA+++ T G
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
Query: 191 TPLHIASHF--GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
T + G + YL + ++ + L S + + G
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTV 181
Query: 249 NATTNHGQTALNIA 262
+T A
Sbjct: 182 LRRDGPEETDWWWA 195
Score = 168 bits (429), Expect = 2e-51
Identities = 48/253 (18%), Positives = 75/253 (29%), Gaps = 31/253 (12%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDC 70
+R +L K G+ A PL L AA +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLV--------------------------LLLDAALTGEL 34
Query: 71 KAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA 130
+ ++ + P + T LH A N +I + LI ANVN+ H TPLH A
Sbjct: 35 EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94
Query: 131 CKWGKVAMVELLISKGANIEAKTR-DGLTPLHCAARS--GHDNVIDILIEKGAALYSKTK 187
+ L+ GA I A T DG T G+ + L + ++
Sbjct: 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 154
Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
L S + + + V T A+ G+ + G
Sbjct: 155 GAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY-FGLF 212
Query: 248 PNATTNHGQTALN 260
P + +
Sbjct: 213 PRVKPQRSKVKHH 225
Score = 159 bits (405), Expect = 6e-48
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 6/164 (3%)
Query: 107 ELLIQKHANVNNQAKHNITP---LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
+++K + + + P L A G++ +V+ + + + +G+T LH A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA-TTNLG 222
+ +++D LI GA + S G+TPLH A+ + LV++GA + A T + G
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121
Query: 223 YTPLHQAS--QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
T + ++G L + AL
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165
Score = 138 bits (350), Expect = 9e-40
Identities = 35/230 (15%), Positives = 61/230 (26%), Gaps = 34/230 (14%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
AA VV+ + + + + E+G T L
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITA-----------------------------L 58
Query: 62 HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ-A 120
H A + L+ + + + +TPLH AA +T I L+Q A +
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 121 KHNITPLHVA--CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
T + G L ++ + L + D + +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGE 177
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMV-RYLVENGANVNATTNLGYTPLH 227
+ + T A+ GQ V R V + H
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 106 bits (266), Expect = 2e-27
Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 30/136 (22%)
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
+ ++ K + R L PL L A+
Sbjct: 1 MRSVLRKAGSPRKARRARLNPL------------------------------VLLLDAAL 30
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
G+L +V+ V+ + + G T LH A I+D L+ AGA N+ +HG T
Sbjct: 31 TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90
Query: 259 LNIAQKLGYISVIETL 274
L+ A + L
Sbjct: 91 LHCAASCNDTVICMAL 106
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 171 bits (437), Expect = 1e-53
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 2/149 (1%)
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
+ + L AA G L++ AN N + P+ V G +
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVA 60
Query: 140 ELLISKGANIEAKTRDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
ELL+ GA LT P+H AAR G + + +L GA L + G P+ +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLH 227
G ++ RYL + +
Sbjct: 121 LGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 162 bits (412), Expect = 6e-50
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
++ A + + L A G+V V L+ GAN A G P+ G
Sbjct: 1 MEPAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 170 NVIDILIEKGAALYSKTKAGFT-PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
V ++L+ GA A T P+H A+ G L+ + L GA ++ G P+
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
A + G + L A + + A
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 135 bits (343), Expect = 1e-39
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 7/147 (4%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L AA + + LLE +P+ ++ P+ + G+ +AELL+ A N
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73
Query: 120 AKHNIT-PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
+T P+H A + G + + +L GA ++ + G P+ A GH +V L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMV 205
G I + G ++
Sbjct: 134 AG-----GTRGSNHARIDAAEGPSDIP 155
Score = 135 bits (342), Expect = 2e-39
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
+ A + L AA G + L+E GA + G P+ + G
Sbjct: 1 MEPAAG--SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 203 NMVRYLVENGANVNATTNLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
+ L+ +GA N T P+H A+++G + + +L AGA+ + G+ +++
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 262 AQKLGYISVIETL 274
A++LG+ V L
Sbjct: 118 AEELGHRDVARYL 130
Score = 103 bits (259), Expect = 3e-27
Identities = 30/145 (20%), Positives = 47/145 (32%), Gaps = 11/145 (7%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
AA VR LL G N G P+ V M G RV +LL + +
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPA 76
Query: 57 KL-PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
L +H AA++ +L DV+ P+ +A G+ ++A L
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136
Query: 116 VNNQAKHNITPLHVACKWGKVAMVE 140
+ G + +
Sbjct: 137 TRGS-----NHARIDAAEGPSDIPD 156
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 171 bits (435), Expect = 2e-53
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 92 TPLHIAAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
L AA G+ + LL ++ + + + T L V +G A+ L+ +GA+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+ G +P+H AAR+G + + +L+E GA + G P+H+A G +V +L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
++++ G TPL A Q+G ++D+L
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 158 bits (402), Expect = 2e-48
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 125 TPLHVACKWGKVAMV-ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
L A G V V LL + + +A R G T L G + L+++GA+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
+ +G +P+H A+ G L+ ++ LVE+GA+VN G P+H A Q+G ++ L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA- 121
Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
A + + G T L +A + G +++ L
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 156 bits (397), Expect = 1e-47
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 60 ALHIAAKKDDCKAAALLLENDH-SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
L AA + D + LL + PD + T L + +G+T IA L+++ A+ N
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
Q +P+H A + G + +++L+ GA++ G P+H A + GH V+ L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-A 122
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+ L+ + G TPL +A G ++V L
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 131 bits (333), Expect = 4e-38
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 32/178 (17%)
Query: 1 MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
AA VR LL + + G T L V G +
Sbjct: 8 GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIA--------------- 51
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LL+ SP+V+ S +P+H AA G + ++L++ A+VN
Sbjct: 52 --------------LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
P+H+A + G A+V L + +++ + GLTPL A + G +++DIL
Sbjct: 98 DGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 117 bits (296), Expect = 1e-32
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 156 GLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
L AA G + L+ + + + G T L + FG + L++ GA+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
N G +P+H A++ G + + +L+ GA N G +++A + G+ +V+ L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 173 bits (440), Expect = 5e-53
Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 33/239 (13%)
Query: 24 ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
+G + + GH ++ + AA+K D +A + LLE
Sbjct: 11 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLE- 66
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ-AKHNITPLHVACKWGKVAM 138
D D + T L A G+ LL + A+++++ + +T LH+A + + +
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA------------------ 180
VE L+ GA+IE + GLT L A ++ G
Sbjct: 127 VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186
Query: 181 ----ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
+ K G ++ + + A A L A + +
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY--EDGLEYAVAESVI 243
Score = 166 bits (422), Expect = 3e-50
Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 17/232 (7%)
Query: 44 VAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103
V ++ + T G+ + I K + + DV S TP AA +
Sbjct: 3 VNKIIGSRTAGEGAME-YLIEWKDGHSPSWVPSSY--IAADVVSEYE-TPWWTAARKADE 58
Query: 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK-TRDGLTPLHC 162
L++ +V+ ++ T L G V LL GA+++ + R GLT LH
Sbjct: 59 QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
AA V++ L+E GA + + + G T L +A + ++ G +
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV-- 175
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ + + +++ G G+ + +
Sbjct: 176 -INVLEGQVFEYAEVDEIVEKRG--------KGKDVEYLVRWKDGGDCEWVK 218
Score = 83.4 bits (207), Expect = 5e-19
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 11/138 (7%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-GKVKLP 59
MAA VV L+ G + + E G T L +A + ++ + G K+
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
+ + + ++ + ++ + + A
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGKGK--------DVEYLVRWKDGGDCEWVKGVHVAEDV-- 226
Query: 120 AKHNITPLHVACKWGKVA 137
AK L A +
Sbjct: 227 AKDYEDGLEYAVAESVIG 244
Score = 77.3 bits (191), Expect = 9e-17
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 23/119 (19%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
G +R+ + G I G A+V
Sbjct: 1 GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYIAADV 41
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ TP A+++ + LL +A +G+TAL LG + L
Sbjct: 42 VSE---YETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 166 bits (422), Expect = 5e-51
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
I G++ A+V ++ + TP A + + L+ + +++A
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLL-EDRDVDA 71
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVE 210
+G T L A G D + +L E GA L + + G T LH+A+ + + +V LVE
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
GA++ G T L A + + + G +
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 153 bits (390), Expect = 2e-46
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 6/175 (3%)
Query: 44 VAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103
V ++ + T G+ + I K + + DV S TP AA +
Sbjct: 2 VNKIIGSRTAGEGAME-YLIEWKDGHSPSWVPSSY--IAADVVSEYE-TPWWTAARKADE 57
Query: 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK-TRDGLTPLHC 162
L+ + +V+ ++ T L G V LL GA+++ + R GLT LH
Sbjct: 58 QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
AA V++ L+E GA + + + G T L +A + ++ G +
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 152 bits (387), Expect = 9e-46
Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 5/164 (3%)
Query: 112 KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
+ A + K G A++ ++ TP AAR +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNAT-TNLGYTPLHQAS 230
+ L+E + + + G T L + G VR L E GA+++ G T LH A+
Sbjct: 60 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118
Query: 231 QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
R +++ L+ GA G TAL +A+++ +
Sbjct: 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Score = 146 bits (370), Expect = 3e-43
Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query: 24 ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
+G + + GH ++ + AA+K D +A + LLE+
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLED 66
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ-AKHNITPLHVACKWGKVAM 138
D + T L A G+ LL + A+++++ + +T LH+A + + +
Sbjct: 67 -RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
VE L+ GA+IE + GLT L A ++ G
Sbjct: 126 VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167
Score = 115 bits (290), Expect = 2e-31
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 7/156 (4%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN---DTKGKVK 57
+ ++ H + + TP A ++ ++ ++ LLE+ D +
Sbjct: 20 IEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENG 76
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVK-SNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
AL A K LL E D + T LH+AA Y + E L++ A++
Sbjct: 77 RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
+ + +T L +A + K + G I +
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 161 bits (411), Expect = 4e-50
Identities = 56/123 (45%), Positives = 86/123 (69%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPLH+AA G+ + +LL++ A+VN + K+ TPLH+A + G + +V+LL+ GA++
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
AK ++G TPLH AAR+GH V+ +L+E GA + +K K G TPLH+A+ G L +V+ L+E
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 211 NGA 213
GA
Sbjct: 123 AGA 125
Score = 157 bits (401), Expect = 1e-48
Identities = 59/122 (48%), Positives = 86/122 (70%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
K K G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL A
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 245 GA 246
GA
Sbjct: 124 GA 125
Score = 139 bits (352), Expect = 2e-41
Identities = 55/120 (45%), Positives = 82/120 (68%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+G TPLH AAR+GH V+ +L+E GA + +K K G TPLH+A+ G L +V+ L+E GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
VNA G TPLH A++ G + ++ LLL AGA NA +G+T L++A + G++ V++ L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 138 bits (351), Expect = 3e-41
Identities = 50/121 (41%), Positives = 78/121 (64%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LH+AA+ + LLLE + K + TPLH+AA G+ + +LL++ A+VN +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
K+ TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 180 A 180
A
Sbjct: 125 A 125
Score = 67.8 bits (167), Expect = 2e-14
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+ H VV+ LL G + ++G TPL +A + GH VV +LLE
Sbjct: 41 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--------- 91
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
A + K + TPLH+AA G+ + +LL++ A
Sbjct: 92 ----ADV----------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 156 bits (396), Expect = 8e-48
Identities = 35/132 (26%), Positives = 65/132 (49%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
++ T LHIA+ G+ E L+Q ++ N + TPLH AC G + +VELL+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
A + +PLH AA++GH +++ +L+ GA+ + G P+ +++
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Query: 206 RYLVENGANVNA 217
+N ++ +
Sbjct: 126 LLPEKNESSSAS 137
Score = 152 bits (387), Expect = 2e-46
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
+ T LH+A G + VE L+ G++ K G TPLH A GH V++
Sbjct: 2 IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
+L++ A + + +PLH A+ G +++V+ L+ GA+ NA G P+ +
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120
Query: 234 RVLIIDLLLGAGAQPNAT 251
++ L + +A+
Sbjct: 121 MKSLLLLPEKNES-SSAS 137
Score = 142 bits (362), Expect = 1e-42
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
G + G T LH A+ G ++ L++ G+ K AG+TPLH A + G L +V
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
L+++ A VN T +PLH A++ G V I+ LLL GA NA G ++
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 266 GYISVIETL 274
S++
Sbjct: 120 SMKSLLLLP 128
Score = 140 bits (355), Expect = 1e-41
Identities = 43/121 (35%), Positives = 67/121 (55%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LHIA+ K D + LL+N P+VK ++ +TPLH A ++G+ + ELL+Q A VN
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
N +PLH A K G V +V+LL+S GA+ A GL P+ +++ + +
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Query: 180 A 180
+
Sbjct: 133 S 133
Score = 102 bits (258), Expect = 3e-27
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 26 EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDH 81
G T L +A +G V LL+N + K LH A K LLL++
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 82 SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
+ + +PLH AA G+ +I +LL+ A+ N + P+ +++ L
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Query: 142 LISKGAN 148
++
Sbjct: 128 PEKNESS 134
Score = 69.0 bits (170), Expect = 1e-14
Identities = 19/118 (16%), Positives = 28/118 (23%), Gaps = 30/118 (25%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
A H VV LL +P
Sbjct: 49 EACNHGHLKVVELLLQHKALVNTTGYQNDSP----------------------------- 79
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
LH AAK LLL S + + P+ ++ L K+ + +
Sbjct: 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE-KNESSSA 136
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 159 bits (403), Expect = 2e-47
Identities = 51/275 (18%), Positives = 87/275 (31%), Gaps = 58/275 (21%)
Query: 4 QENHDGVVRYLLSKGGNQT----LATEDGFTPLAVAM---QQGHDRVVAVLLENDTKGKV 56
E G++ YL T G T L A+ Q G + + LL+ D
Sbjct: 15 PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID----- 69
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
+ + + + LHIA + +LL++ A+V
Sbjct: 70 -------------KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116
Query: 117 NNQAKHNI-------------TPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPL 160
+ +A PL +A + +V L+ A++EA G T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176
Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
H ++ + L I + G L M L + +
Sbjct: 177 HALVMIADNS-----------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
G TPL A+++G++ I +L A +H
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
Score = 143 bits (362), Expect = 2e-41
Identities = 45/254 (17%), Positives = 79/254 (31%), Gaps = 55/254 (21%)
Query: 59 PALHIAAKKDDCKAAALLLE--------NDHSPDVKSNSHFTPLHIAA---HYGNTNIAE 107
L + + LLE S + ++ T L A G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 108 LLIQ-----------KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTR-- 154
L+Q +A ++ + LH+A + + V+LL+ GA++ +
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 155 -----------DGLTPLHCAARSGHDNVIDILIEKG---AALYSKTKAGFTPLHIASHFG 200
G PL AA + +V+ L+E A+L + G T LH
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV--- 180
Query: 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
+ A + + L G + + L + + G T L
Sbjct: 181 --------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226
Query: 261 IAQKLGYISVIETL 274
+A K G I + +
Sbjct: 227 LAAKEGKIEIFRHI 240
Score = 110 bits (276), Expect = 9e-29
Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 69/223 (30%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A ++ V+ L+ G + L F
Sbjct: 96 IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE------------------ 137
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH---ANVN 117
PL +AA ++ L++ A++
Sbjct: 138 -------------------------------LPLSLAACTKQWDVVTYLLENPHQPASLE 166
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
T LH + A + L G + L
Sbjct: 167 ATDSLGNTVLHALV-----------------MIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
G TPL +A+ G++ + R++++ + A +
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHH 252
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 154 bits (392), Expect = 3e-47
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
++ + L A G+V V L+ GA+ A R G P+ G V +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61
Query: 174 ILIEKGAALYSKTKAGFT-PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
+L+ GA A T P+H A+ G L+ + L GA ++ G P+ A +Q
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 233 GRVLIIDLLLGAGA 246
G I L A
Sbjct: 122 GHRDIARYLHAATG 135
Score = 153 bits (389), Expect = 9e-47
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
+ S L AA G L++ A+ N + P+ V G + ELL+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64
Query: 144 SKGANIEAKTRDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
GA LT P+H AAR G + + +L GA L G P+ +A G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 203 NMVRYLVENGAN 214
++ RYL +
Sbjct: 125 DIARYLHAATGD 136
Score = 141 bits (357), Expect = 5e-42
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
I L AA G + L+E GA + + G P+ + G +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 206 RYLVENGANVNATTNLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
L+ +GA N T P+H A+++G + + +L AGA+ + G+ +++A++
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 265 LGYISVIETL 274
G+ + L
Sbjct: 121 QGHRDIARYL 130
Score = 127 bits (323), Expect = 6e-37
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L AA + + LLE P+ + P+ + G+ +AELL+ A N
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCA 73
Query: 120 AKHNIT-PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
+T P+H A + G + + +L GA ++ G P+ A GH ++ L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Query: 179 GA 180
Sbjct: 134 TG 135
Score = 91.7 bits (229), Expect = 4e-23
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTK 53
AA VR LL G + G P+ V M G +V +LL + D
Sbjct: 18 TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA 76
Query: 54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH 113
+H AA++ +L DV P+ +A G+ +IA L
Sbjct: 77 TLT--RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Query: 114 AN 115
+
Sbjct: 135 GD 136
Score = 30.1 bits (69), Expect = 0.39
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ L A G + + L
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQL 31
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 150 bits (381), Expect = 5e-45
Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%)
Query: 86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN---ITPLHVACKWGKVAMVELL 142
+ S + + AA G L +K + L + + L
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVID------ILIEKGAALYSKTKAGFTPLHIA 196
I+KGA+I+++T++G T + G +++ I +EKGA + + K +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 197 SHFGQLNMVR-------YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
++ ++G + G T L + + + + ++ + N
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Query: 250 ATTN 253
N
Sbjct: 182 LKEN 185
Score = 127 bits (322), Expect = 4e-36
Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 16/173 (9%)
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANI---EAKTRDGLTPLHCAARSGHDNVIDI 174
+ A + A G L KG K+ L +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLN------MVRYLVENGANVNATTNLGYTPLHQ 228
LI KGA + S+TK G T G + + + +E GA++ A + +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 229 ASQQGRVLIID-------LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
V + + +G Q G TAL ++ ++ +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173
Score = 126 bits (318), Expect = 1e-35
Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 41/208 (19%)
Query: 27 DGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKL--PALHIAAKKDDCKAAALLLEN 79
+ ++ A G L E ++ K + L + K + L+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
++ T G +I +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITG---------------------------TTELC 97
Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVID-------ILIEKGAALYSKTKAGFTP 192
++ + KGA+I A + + + + + I + G L K K G T
Sbjct: 98 KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTN 220
L + ++ + + N N
Sbjct: 158 LEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 108 bits (272), Expect = 6e-29
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 9/136 (6%)
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA---ALYSKTKAGFTPLHIASHFGQLNMVRY 207
+ + AA G L EKG K+ + L + + + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 208 LVENGANVNATTNLGYTPLHQASQQGR------VLIIDLLLGAGAQPNATTNHGQTALNI 261
L+ GA++ + T G T Q G + + L GA A + +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 262 AQKLGYISVIETLKIV 277
++ E + +
Sbjct: 121 NIFNYFVDENEMIPLY 136
Score = 77.4 bits (191), Expect = 2e-17
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 17/133 (12%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVA------VLLEN----D 51
E + +L++KG + T++G T Q G + + + LE
Sbjct: 49 NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108
Query: 52 TKGKVKLPALHIAAKKDDCKAA-------ALLLENDHSPDVKSNSHFTPLHIAAHYGNTN 104
K + + ++ +K T L
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168
Query: 105 IAELLIQKHANVN 117
+++ N
Sbjct: 169 ALKMMEDYIKKYN 181
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 146 bits (371), Expect = 3e-44
Identities = 41/111 (36%), Positives = 66/111 (59%)
Query: 84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
S TPLH AA G+ + L+ K A+VN ++K TPLH+A K G +V+LL+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLH 194
+KGA++ A+++DG TP H A ++GH ++ +L KGA + +++ H
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 142 bits (361), Expect = 8e-43
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
+ K TPLH A K G V+ L+SKGA++ A+++DG TPLH AA++GH ++
Sbjct: 2 HMWGS--KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
+L+ KGA + +++K G TP H+A G +V+ L GA+VNA + H
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 136 bits (346), Expect = 2e-40
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
G +K DG TPLH AA++GH + L+ KGA + +++K G TPLH+A+ G +V
Sbjct: 1 GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
+ L+ GA+VNA + G TP H A + G I+ LL GA NA +
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 112 bits (283), Expect = 3e-31
Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
LH AAK + LL + +S TPLH+AA G+ I +LL+ K A+VN +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLH 161
+K TP H+A K G +V+LL +KGA++ A++ H
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 101 bits (254), Expect = 5e-27
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
+K G TPLH A+ G V+ L+ GA+VNA + G TPLH A++ G I+ LLL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETL 274
GA NA + G T ++A+K G+ +++ L
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 51.2 bits (124), Expect = 1e-08
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
+AA+ H +V+ LL+KG + ++DG TP +A + GH +V +L + +
Sbjct: 48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Query: 57 KLPALH 62
H
Sbjct: 108 SSHHHH 113
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 144 bits (367), Expect = 1e-43
Identities = 30/114 (26%), Positives = 50/114 (43%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
A K G + V+ ++KG ++ G PLH AA G +++ L+ KGA + +
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
K TPL A + G ++ V+ L+ GA+ G T Q ++
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 138 bits (351), Expect = 3e-41
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
A G+ + + + K +VN + PLH A G++ ++E L+ KGA+I A
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
+ +TPL A GH + + +L+ KGA K G T + ++ L++
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA----IKALLQ 123
Score = 138 bits (350), Expect = 4e-41
Identities = 31/118 (26%), Positives = 51/118 (43%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
A ++G + + + KG + + G PLH A+ GQL ++ +L+ GA+
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
+NA TPL A +G V + LLL GA G TA ++++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 125 bits (318), Expect = 3e-36
Identities = 36/113 (31%), Positives = 48/113 (42%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
A K D + + PLH AA G I E L+ K A++N
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
KH+ITPL A G V+ V+LL+SKGA+ K DGLT ++
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 101 bits (254), Expect = 7e-27
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
A G L+ V+ V G +VN T G PLH A+ G++ I++ LL GA
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 249 NATTNHGQTALNIAQKLGYISVIETL 274
NA H T L A G++S ++ L
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLL 92
Score = 55.9 bits (136), Expect = 4e-10
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
AA ++ +LL KG + + TPL A+ +GH V +LL KG
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 58 LPALHIAAKKD 68
L A +
Sbjct: 107 LTAFEATDNQA 117
Score = 53.9 bits (131), Expect = 2e-09
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVV 44
A E H V+ LLSKG ++T+ DG T Q ++
Sbjct: 79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 52.8 bits (128), Expect = 5e-09
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
++ A + G + + + G N T G+ L+ A G + ++E L
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 149 bits (377), Expect = 2e-43
Identities = 53/269 (19%), Positives = 94/269 (34%), Gaps = 65/269 (24%)
Query: 5 ENHDGVVRYLLSKGGN----QTLATEDGFTPLAVAM---QQGHDRVVAVLLENDTKGKVK 57
+ + ++ +L + E G T L AM G + +A+LL+
Sbjct: 27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD-------- 78
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
+A K D K D T LHIA N + LL++ A+V
Sbjct: 79 -----VARKTDSLKQFVNASYTD-----SYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
Query: 118 NQAKHNI--------------TPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPL 160
A + PL +A ++A+V+ L+ A+I A+ G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Query: 161 HCAARSGHDNV---------IDILIEKGAALYS-------KTKAGFTPLHIASHFGQLNM 204
H + V + ++ GA L+ + G TPL +A+ G++ +
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQG 233
+ Y+++ + H A+
Sbjct: 249 LAYILQREIH-------EPECRHAAAHHH 270
Score = 137 bits (348), Expect = 5e-39
Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 60/256 (23%)
Query: 60 ALHIAAKKDDCKAAALLLE-----NDHSPDV---KSNSHFTPLHIA---AHYGNTNIAEL 108
++ A + +C+ LL D + T L A H G + L
Sbjct: 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75
Query: 109 LIQK-----------HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL 157
L+ +A+ + T LH+A + + +V LL+ GA+++A
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG---AN 214
+ G PL +A+ QL +V++L++N A+
Sbjct: 136 FKKTKGRPGFYF-------------------GELPLSLAACTNQLAIVKFLLQNSWQPAD 176
Query: 215 VNATTNLGYTPLHQASQQGRVLIID----------------LLLGAGAQPNATTNHGQTA 258
++A ++G T LH + + + L T G T
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236
Query: 259 LNIAQKLGYISVIETL 274
L +A G I V+ +
Sbjct: 237 LALAASSGKIGVLAYI 252
Score = 125 bits (316), Expect = 2e-34
Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 39/200 (19%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELL-------ISKGANIEAKTRD-GLTPLHCA-- 163
A ++ + A +E L + + E K + G T L A
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 164 -ARSGHDNVIDILIEKGAALY-----------SKTKAGFTPLHIASHFGQLNMVRYLVEN 211
+G ++ I +L++ G T LHIA + +V LVEN
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
Query: 212 GANVNATTN--------------LGYTPLHQASQQGRVLIIDLLLGAG---AQPNATTNH 254
GA+V A N G PL A+ ++ I+ LL A +A +
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183
Query: 255 GQTALNIAQKLGYISVIETL 274
G T L+ ++ +V T
Sbjct: 184 GNTVLHALVEVADNTVDNTK 203
Score = 106 bits (266), Expect = 4e-27
Identities = 35/222 (15%), Positives = 61/222 (27%), Gaps = 74/222 (33%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+A + + +V L+ G + A F +
Sbjct: 107 IAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG------------------ 148
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK---HANVN 117
PL +AA I + L+Q A+++
Sbjct: 149 ------------------------------ELPLSLAACTNQLAIVKFLLQNSWQPADIS 178
Query: 118 NQAKHNITPLHVACKWGK---------VAMVELLISKGANI-------EAKTRDGLTPLH 161
+ T LH + +M ++ GA + E R GLTPL
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238
Query: 162 CAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
AA SG V+ ++++ H A+H +
Sbjct: 239 LAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273
Score = 84.8 bits (210), Expect = 3e-19
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 36/167 (21%)
Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE-------KGAAL-YSKTKAGFTPLHI 195
S A + + A + ++ L+ + + + G T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 196 AS---HFGQLNMVRYLVENGANVNATTNL-----------GYTPLHQASQQGRVLIIDLL 241
A H GQ + + L++ ++ G T LH A ++ + ++ LL
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 242 LGAGAQPNATTN--------------HGQTALNIAQKLGYISVIETL 274
+ GA A N G+ L++A +++++ L
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 144 bits (366), Expect = 3e-43
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 112 KHANVNNQAKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
+ ++ ++ ++ L A + G+ V +L++ GA++ AK GLTPL+ A GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
++++L++ GA + + GFTPLH+A+ G L + L+++GA+VNA G T +
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 231 QQGRVLIIDLLL 242
G + ++L
Sbjct: 122 GNGNEDLAEILQ 133
Score = 139 bits (353), Expect = 2e-41
Identities = 37/119 (31%), Positives = 65/119 (54%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
L AA G + +L+ A+VN + ++ +TPL++A G + +VE+L+ GA++ A
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
G TPLH AA GH + ++L++ GA + ++ K G T I+ G ++ L +
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 129 bits (327), Expect = 2e-37
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 7/135 (5%)
Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF 199
G+++ L AAR+G D+ + IL+ GA + +K + G TPL++A+
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
G L +V L++NGA+VNA +G+TPLH A+ G + I ++LL GA NA G+TA
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 260 NIAQKLGYISVIETL 274
+I+ G + E L
Sbjct: 118 DISIGNGNEDLAEIL 132
Score = 125 bits (317), Expect = 5e-36
Identities = 33/118 (27%), Positives = 62/118 (52%)
Query: 60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
L AA+ +L+ N + K TPL++A +G+ I E+L++ A+VN
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
TPLH+A G + + E+L+ GA++ A+ + G T + +G++++ +IL +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 80.5 bits (200), Expect = 7e-19
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
AA+ D VR L++ G + E G TPL +A GH +V VLL+N + +
Sbjct: 20 EAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH 113
LH+AA + A +LL++ + + T I+ GN ++AE+L + +
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 144 bits (366), Expect = 6e-42
Identities = 45/254 (17%), Positives = 87/254 (34%), Gaps = 52/254 (20%)
Query: 2 AAQENHDGVVRYLLSKGGN----QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVK 57
+ + +G++ +LL+ + G T L A+ N + G+
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALL------------NLSAGRND 63
Query: 58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
+ + + + T LHIA + ELL++K A+V+
Sbjct: 64 TIPILLDIAEKTGNMREFINSPFRDVY---YRGQTALHIAIERRCKHYVELLVEKGADVH 120
Query: 118 NQAKHNI--------------TPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPL 160
QA+ PL +A + +V L G A++ + G T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Query: 161 HCAARSGHDN---------VIDILIEKGAALYSKT-------KAGFTPLHIASHFGQLNM 204
H + + D+L+ K A L+ T G +PL +A+ G++ +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240
Query: 205 VRYLVENGANVNAT 218
++++ A
Sbjct: 241 FQHIIRREIADAAA 254
Score = 130 bits (328), Expect = 3e-36
Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 55/238 (23%)
Query: 92 TPLHIAAHYGNTN----IAELLIQKHANVNN----QAKHNITPLHVA---CKWGKVAMVE 140
L G+ + + L+ + + + T L A G+ +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 141 LLISKG-----------ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA- 188
+L+ + G T LH A + +++L+EKGA ++++ +
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 189 -------------GFTPLHIASHFGQLNMVRYLVENG---ANVNATTNLGYTPLHQASQQ 232
G PL +A+ Q ++V YL ENG A++ + G T LH
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186
Query: 233 G---------RVLIIDLLLGAGAQPNATT-------NHGQTALNIAQKLGYISVIETL 274
+ DLLL A+ T N G + L +A K G I + + +
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 108 bits (272), Expect = 3e-28
Identities = 37/179 (20%), Positives = 56/179 (31%), Gaps = 39/179 (21%)
Query: 123 NITPLHVACKWGKVA----MVELLISKGANIEAK----TRDGLTPLHCAA---RSGHDNV 171
N L G ++ L++ + + G T L A +G ++
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 172 IDILIEKGAALY-----------SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
I IL++ G T LHIA + V LVE GA+V+A
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 221 --------------LGYTPLHQASQQGRVLIIDLLLGAG---AQPNATTNHGQTALNIA 262
G PL A+ + I+ L G A + G T L+
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183
Score = 80.2 bits (198), Expect = 1e-17
Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 43/163 (26%)
Query: 1 MAAQENHDGVVRYLLSKGGN--------------QTLATEDGFTPLAVAMQQGHDRVVAV 46
+A + V L+ KG + + G PL++A +V
Sbjct: 99 IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158
Query: 47 LLEN----------DTKGKVKLPALHIAA---------KKDDCKAAALLLEND------- 80
L EN D++G LH K K LLL
Sbjct: 159 LTENGHKQADLRRQDSRGNT---VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
Query: 81 HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
+ + +N +PL +AA G I + +I++ H+
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 137 bits (346), Expect = 3e-38
Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 21/234 (8%)
Query: 50 NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAEL 108
N G H++ + + ++ + H TPLH N + +
Sbjct: 90 NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKH 149
Query: 109 LIQKHANVNNQAKHNITPLHVACKWG----KVAMVELLISKGANIEAKTRDGLTPLHCAA 164
L++ +N + L A K LL + + T LH
Sbjct: 150 LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209
Query: 165 ------------RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN- 211
+ D ++ +++K + + + + ++
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269
Query: 212 ---GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
+NA + G T L+ A++ G + I+D LL GA P G ++
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 125 bits (316), Expect = 5e-34
Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 22/238 (9%)
Query: 59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL-HIAAHYGNTNIAELLIQKHANVN 117
L + + L + + + + S H++ + + N+N
Sbjct: 65 AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124
Query: 118 NQA-KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH----DNVI 172
+H TPLH + +V+ L+ G+N G + L A +S +
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 184
Query: 173 DILIEKGAALYSKTKAGFTPLHIA------------SHFGQLNMVRYLVENGANVNATTN 220
+L L + T LH + + ++ ++V+ +
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244
Query: 221 LGYTPLHQA----SQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
+ + +DL NA ++G T LNIA +LG IS+++ L
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302
Score = 117 bits (293), Expect = 1e-30
Identities = 34/259 (13%), Positives = 69/259 (26%), Gaps = 32/259 (12%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN---------DT 52
+ L + N+ + V N D
Sbjct: 70 LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE 129
Query: 53 KGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT----NIAEL 108
G LH + + L+++ + N + L A N L
Sbjct: 130 HGNT---PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186
Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKV------------AMVELLISKGANIEAKTRDG 156
L + + + N T LH + ++ ++ K +
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246
Query: 157 LTPLHCAARSGHDN----VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
+ +D+ L ++ G T L+IA+ G +++V L++ G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306
Query: 213 ANVNATTNLGYTPLHQASQ 231
A+ G P+ +
Sbjct: 307 ADPFIANKSGLRPVDFGAG 325
Score = 100 bits (250), Expect = 1e-24
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 25/221 (11%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGK 55
++ V + N + E G TPL + +V L+++
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162
Query: 56 VKLPALHIAAKKDDCK----AAALLLENDHSPDVKSNSHFTPLHIAA------------H 99
+ L A K + ALL ++ + + T LH
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222
Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVA----CKWGKVAMVELLISKGANIEAKTRD 155
Y + +++K + K + ++L + A+ +
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
G T L+ AAR G+ +++D L++ GA + K+G P+
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 33.5 bits (76), Expect = 0.079
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQ 37
+AA+ + +V LL G + +A + G P+
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 123 bits (311), Expect = 1e-35
Identities = 41/90 (45%), Positives = 64/90 (71%)
Query: 91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
TPLH+AA G+ + +LL++ A+VN + K+ TPLH+A + G + +V+LL+ GA++
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
AK ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 119 bits (301), Expect = 3e-34
Identities = 43/89 (48%), Positives = 64/89 (71%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA 213
K K G TPLH+A+ G L +V+ L+E GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 117 bits (295), Expect = 3e-33
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+G TPLH AAR+GH V+ +L+E GA + +K K G TPLH+A+ G L +V+ L+E GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 102 bits (256), Expect = 1e-27
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 249 NATTNHGQTALNIAQKLGYISVIETL 274
NA +G+T L++A + G++ V++ L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 67.8 bits (167), Expect = 9e-15
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+AA+ H VV+ LL G + ++G TPL +A + GH VV +LLE
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--------- 58
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
A + K + TPLH+AA G+ + +LL++ A
Sbjct: 59 ----ADV----------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 130 bits (329), Expect = 2e-35
Identities = 37/298 (12%), Positives = 75/298 (25%), Gaps = 54/298 (18%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
+ + + LL+ + + + +A + GH V+ L E
Sbjct: 101 ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--------- 151
Query: 61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV---N 117
+ ++ +AA G+ ++ L +
Sbjct: 152 ------------------PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
QA++ A G ++ L+ + ++ L E
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253
Query: 178 KGAALY-------------SKTKAGFTPLHIAS---HFGQLNMVRYL-----VENGANVN 216
A S+ GF L L+ +R+L ++ A
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
L A + G LLL + T + I + G + +
Sbjct: 314 TIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVA 368
Score = 119 bits (299), Expect = 4e-31
Identities = 32/247 (12%), Positives = 72/247 (29%), Gaps = 21/247 (8%)
Query: 36 MQQGHDRVVAVLLE--NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP 93
M + + + L + + +L L+ A + K L + H +KS
Sbjct: 42 MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAK---QLWSDAHKKGIKSEVICFV 98
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA-- 151
I + LL+ V N +A + G + ++ L
Sbjct: 99 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT--KAGFTPLHIAS-HFGQLNMVRYL 208
+ AA +GH +V++ L E + + A+ G N++ +L
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218
Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
++ + + + ++ L A ++ G
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL-----------KEMHDAFKLSNPDGVF 267
Query: 269 SVIETLK 275
++ +
Sbjct: 268 DLVTKSE 274
Score = 107 bits (269), Expect = 6e-27
Identities = 36/251 (14%), Positives = 69/251 (27%), Gaps = 43/251 (17%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLA--TEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKL 58
+AA+ H V+ L + +A + + +A + GH V+ L E +
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193
Query: 59 P------ALHIAAKK---------------DDCKAAALLLENDHSPDVK----SNSHFTP 93
A AA A E +
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253
Query: 94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL--------ISK 145
+H A N + L+ K + L + +++ + I
Sbjct: 254 MHDAFKLSNPDGVFDLVTKS-----ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
A D L A R G+ +L+ + L +I G+L++
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLR 365
Query: 206 RYLVENGANVN 216
+E+ + +
Sbjct: 366 AVALEHHHHHH 376
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 121 bits (305), Expect = 1e-34
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 97 AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
+ + + + + L+ + +++ + L A + G+ V +L++ GA++ AK ++G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
TPLH AAR+GH V+ +L+E GA + ++ K G T I+ G ++ L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 119 bits (300), Expect = 7e-34
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
L+ +G+++ + D L AAR+G D+ + IL+ GA + +K K G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
TPLH+A+ G L +V+ L+E GA+V A G T + G + ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 109 bits (275), Expect = 4e-30
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
+ H + L+ +G+ + S L A+ GQ + VR L+ NGA+V A G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
TPLH A++ G + ++ LLL AGA A G+TA +I+ G + E L+
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 99.2 bits (248), Expect = 3e-26
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 64 AAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
+ ++ L+ + S+ L AA G + +L+ A+V + K+
Sbjct: 1 GSSHHHHHHSSGLVP--RGSHMGSDL-GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
TPLH+A + G + +V+LL+ GA++ A+ + G T + +G++++ +IL
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 83.8 bits (208), Expect = 2e-20
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 32/141 (22%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
+ +H L+ +G + D L A + G D V +L+ N
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANG---------- 47
Query: 62 HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
A K + TPLH+AA G+ + +LL++ A+V Q K
Sbjct: 48 ---ADVA----------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Query: 122 HNITPLHVACKWGKVAMVELL 142
T ++ G + E+L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 53.7 bits (130), Expect = 2e-09
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
AA+ D VR L++ G + ++G TPL +A + GH VV +LLE + K
Sbjct: 30 EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 57 KLPALHIAAKKDDCKAAALL 76
A I+ + A +L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 85.0 bits (210), Expect = 2e-19
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 70 CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN---IAELLIQKHANVNNQAKHNITP 126
A + L T LH+A + I + L+Q N++ Q T
Sbjct: 149 AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
LH C ++LL+ A+IE G TPL A R H++ ++L +
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 78.5 bits (193), Expect = 6e-17
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 189 GFTPLHIASHFGQLN---MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
T LH+A +V +LV+N N++ T G T LH + LLL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 246 AQPNATTNHGQTALNIAQKLGYISVIETL 274
A G+T L+IA++L + E L
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 75.4 bits (185), Expect = 6e-16
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK- 135
+ VK+ F L A + + + N + + T LH+A +
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADGVDLT-------EKIPLANGHEPDETALHLAVRSVDR 182
Query: 136 --VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
+ +V+ L+ N++ +T G T LH + + + +L+ A++ ++G TPL
Sbjct: 183 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242
Query: 194 HIASHFGQLNMVRYLVENGAN 214
IA + L + +
Sbjct: 243 DIAKRLKHEHCEELLTQALSG 263
Score = 75.4 bits (185), Expect = 8e-16
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 153 TRDGLTPLHCAARSGHDN---VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV 209
T LH A RS ++D L++ L +T G T LH ++ L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 210 ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
A++ G TPL A + +LL A
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 63.5 bits (154), Expect = 1e-11
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 60 ALHIAAKKDD---CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
ALH+A + D L++N + D ++ T LH N +LL++ A++
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
+ TPL +A + ELL +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 55.0 bits (132), Expect = 5e-09
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 15 LSKGGNQTLATEDGFTPLAVAMQQGHDRVVAV---LLENDTKGKVKLP----ALHIAAKK 67
L++ E T L +A++ + + L++N + ALH
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215
Query: 68 DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPL 127
D+ + LLL S ++ + S TPL IA + + ELL Q + N +
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS------HV 269
Query: 128 HVACKWG 134
HV +W
Sbjct: 270 HVEYEWR 276
Score = 41.1 bits (96), Expect = 2e-04
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
++ ++ LL + +A E G TPL +A + H+ +L +
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 82.7 bits (204), Expect = 2e-18
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 70 CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN---IAELLIQKHANVNNQAKHNITP 126
A LH+A N + + +IQ +++ +A T
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229
Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
LH A + + ++LL+ A + G T L A + H ++L +
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 79.3 bits (195), Expect = 4e-17
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 189 GFTPLHIASHFG---QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
LH+A L +V ++++NG +++A G T LH A+ + + LLL
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 246 AQPNATTNHGQTALNIAQKLGYISVIETL 274
A G+TAL+IA+K + E L
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKE-CEEL 277
Score = 74.3 bits (182), Expect = 2e-15
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Query: 62 HIAAKKDDCKAAALLLENDHSP--DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
+I AK + + A + + + L A+ + + +
Sbjct: 134 YIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFG-------QPLPGPDA 186
Query: 120 AKHNITPLHVACKWGK---VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
LH+A K + +V+ +I G +++AK DG T LH AA + + +L+
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
Query: 177 EKGAALYSKTKAGFTPLHIA 196
+ A + + +AG T L IA
Sbjct: 247 KGRALVGTVNEAGETALDIA 266
Score = 71.6 bits (175), Expect = 2e-14
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 9/145 (6%)
Query: 128 HVACKWGKVAMVELLISKGANIEAKTR------DGLTPLHCAARSGHDN---VIDILIEK 178
A + V + G + LH A + + ++D +I+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
G L +K G T LH A+ + Q + ++ L++ A V G T L A ++
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 239 DLLLGAGAQPNATTNHGQTALNIAQ 263
+LL A A A H + I+
Sbjct: 276 ELLEQAQAGTFAFPLHVDYSWVIST 300
Score = 59.2 bits (143), Expect = 3e-10
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 60 ALHIAAKKDDCK---AAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
LH+A K + +++N D K+ T LH AA Y + +LL++ A V
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLH 161
+ T L +A K ELL +A+ PLH
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELL------EQAQAGTFAFPLH 291
Score = 42.3 bits (99), Expect = 9e-05
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
AA N ++ LL E G T L +A ++ H LLE G P
Sbjct: 232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE-LLEQAQAGTFAFP- 289
Query: 61 LHI 63
LH+
Sbjct: 290 LHV 292
Score = 42.3 bits (99), Expect = 1e-04
Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 35/133 (26%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
A + +V +++ GG+ DG T L A + +LL+
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG----------- 248
Query: 62 HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
+A + + T L IA + ELL Q A
Sbjct: 249 ---------RA---------LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF-- 288
Query: 122 HNITPLHVACKWG 134
PLHV W
Sbjct: 289 ----PLHVDYSWV 297
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 81.4 bits (200), Expect = 2e-17
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKT--KAGFTPLHIASHFGQLNMVRYLVENG 212
G + + + GA + + TPL A+ L +L++NG
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
ANVN + G PLH A+ G + L L GA A + G+ L IA + ++
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 273 TLK 275
L+
Sbjct: 319 LLR 321
Score = 78.3 bits (192), Expect = 2e-16
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
TPL A + E L+Q ANVN PLH A G + L + +GA++ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 152 KTRDGLTPLHCAARSGHDNVIDIL 175
+ +G PL A + + +++ +L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 73.3 bits (179), Expect = 7e-15
Identities = 33/166 (19%), Positives = 55/166 (33%)
Query: 49 ENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108
+G+ +P + + ++ + + T L
Sbjct: 161 RGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADAL 220
Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168
N N + N TPL A + E L+ GAN+ G PLH A GH
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280
Query: 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
+ + +++GA L ++ G PL IA ++V L
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 69.4 bits (169), Expect = 2e-13
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 141 LLISKGANIEAKT--RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
++ GA++ +D TPL A + + L++ GA + AG PLH A+
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
G + ++ GA++ A + G PL A + I+ LL A +
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333
Score = 50.2 bits (119), Expect = 3e-07
Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 20 NQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKA 72
N +D TPL A LL+N D+ G+ LH A
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR---GPLHHATILGHTGL 283
Query: 73 AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
A L L+ + + PL IA N +I LL A+
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334
Score = 41.7 bits (97), Expect = 2e-04
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK 53
A H G+ L +G + +G PL +AM+ + +V +L +
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 73.0 bits (179), Expect = 2e-14
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 187 KAGFTPLHIA---SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
LH+A ++ L +V ++++NG +++A G T LH A+ + + LLL
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
A G+TAL+IA+K + E L+
Sbjct: 229 GRALVGTVNEAGETALDIARKKHHKECEELLE 260
Score = 70.7 bits (173), Expect = 8e-14
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 61 LHIAAKKDDCKAAALLL-------ENDHSPDVKSNSHFTPLHIA---AHYGNTNIAELLI 110
L A D + + PD ++ LH+A A+ + + + +I
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEE-LVLHLAVKVANQASLPLVDFII 194
Query: 111 QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
Q +++ +A T LH A + + ++LL+ A + G T L A + H
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254
Query: 171 VIDIL 175
++L
Sbjct: 255 CEELL 259
Score = 70.3 bits (172), Expect = 1e-13
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 125 TPLHVACKW---GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
LH+A K + +V+ +I G +++AK DG T LH AA + + +L++ A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 182 LYSKTKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQ 232
+ + +AG T L IA L + ++ Y+ +
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENL 284
Score = 56.1 bits (135), Expect = 5e-09
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 155 DGLTPLHCAARSGHDN---VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
LH A + + ++D +I+ G L +K G T LH A+ + Q + ++ L++
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
A V G T L A ++ +LL A A A H + I+
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVIST 281
Score = 41.4 bits (97), Expect = 2e-04
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 19/130 (14%)
Query: 15 LSKGGNQTLATEDGFTPLAVAMQQGHDRVVAV---LLEN-------DTKGKVKLPALHIA 64
+ A L +A++ + + + +++N G ALH A
Sbjct: 158 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN---TALHYA 214
Query: 65 AKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI 124
A + LLL+ + + T L IA + ELL Q A
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF----- 269
Query: 125 TPLHVACKWG 134
PLHV W
Sbjct: 270 -PLHVDYSWV 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 3e-05
Identities = 46/350 (13%), Positives = 89/350 (25%), Gaps = 122/350 (34%)
Query: 21 QTLATEDGFT-PLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN 79
+ L T T V + L++ + + K DC+ L
Sbjct: 267 KILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---- 318
Query: 80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKH----------------- 122
+V + + P ++ IAE + + + KH
Sbjct: 319 --PREVLTTN---PRRLSI------IAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 123 -------------------NITPLHVACK-WGKVA------MVELLISKGANIEAKTRDG 156
+I P + W V +V L +E + ++
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKES 424
Query: 157 LTPLH---CAARSGHDNVIDI---LIEKGAALYSKTKA----GFTPL--------HIASH 198
+ + +N + +++ Y+ K P HI H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 199 FGQLNMVR--------YL----VEN-----GANVNATTNL-----------GYTPLHQAS 230
+ +L +E NA+ ++ Y +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 231 QQGRV-LIIDLLLGAGAQPNAT--TNHGQTALNIAQKLGYISVIETLKIV 277
+ V I+D L + T+ + AL + I E K V
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAI-FEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.046
Identities = 32/197 (16%), Positives = 57/197 (28%), Gaps = 82/197 (41%)
Query: 136 VAMVELLISKGANIEAKTRDGLTPLHCA-ARSGH-----------------DNVIDILIE 177
A E L SK GL P A GH +++++++
Sbjct: 1741 KAAFEDLKSK----------GLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 178 KGAALYSKTK-----------AGFTPLHIASHFGQLNMVRYLVE-----NG-----ANVN 216
+G + P +A+ F Q ++Y+VE G N N
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVVERVGKRTGWLVEIVNYN 1847
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKI 276
+QQ + AG AL+ + ++ I+ KI
Sbjct: 1848 V-----------ENQQ---YVA-----AG-----DLR----ALDTVTNV--LNFIKLQKI 1877
Query: 277 VTETTIVTTTVTTIEEK 293
+ ++ +E
Sbjct: 1878 DIIELQKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.0
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 10/24 (41%)
Query: 48 LENDTKGKVKL------PALHIAA 65
L+ +KL PAL I A
Sbjct: 25 LQA----SLKLYADDSAPALAIKA 44
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 27.6 bits (62), Expect = 4.5
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 9/38 (23%)
Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT 224
+AGF P +A R V G LG+T
Sbjct: 124 EAGFAP-RVAYRTANFETARAFVGRG--------LGWT 152
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Length = 116
Score = 26.8 bits (59), Expect = 4.5
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV----TETTIVTTTV 287
R L + +L+ A T G+ + A++ + E K++ ET T V
Sbjct: 33 RALAVVILIAAAGGVALLTTKGKATVAFARE----ARTEVRKVIWPTRQETLHTTLIV 86
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold,
UDP sugar pyrophospho transferase; 2.03A {Leishmania
major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Length = 630
Score = 28.0 bits (61), Expect = 4.6
Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 11/129 (8%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDC 70
++ AT LA++ + D + K + L K
Sbjct: 263 YESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCI---PRVPKEPIGLLCRTKKNSGD 319
Query: 71 KAAALLLEND-------HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
+E + + P + G+ N + + + ++
Sbjct: 320 PWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGI 379
Query: 124 ITPLHVACK 132
+ P + K
Sbjct: 380 V-PEFINPK 387
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 27.8 bits (61), Expect = 5.0
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
+H+ PL ++A+ E + + E+ T ++ G +
Sbjct: 477 GDQRHSFGPLDYESLQQELALKETVWK-KVSPESNEDISTTVVYRMESLGEKS 528
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter,
phosphate transport receptor; HET: MSE; 1.55A
{Lactobacillus brevis}
Length = 264
Score = 27.3 bits (61), Expect = 7.4
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 11 VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVK 57
+ Y+ S TL + G+ +L+E D G +
Sbjct: 224 ITYVQSPAIQNTLVRQLGYLSPD-----------QMLVERDANGHIT 259
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics,
PSI-2, structure initiative; 2.71A {Pseudomonas
aeruginosa PA01}
Length = 306
Score = 26.8 bits (60), Expect = 8.7
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 14/53 (26%)
Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT-----PLHQASQQGR 234
+ G TP +IA + MVR +V G G++ P + + G+
Sbjct: 214 ELGLTP-NIAFSSPSIEMVRGMVGQG--------FGFSLLVTRPHSECTYDGK 257
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 27.0 bits (59), Expect = 9.2
Identities = 11/76 (14%), Positives = 19/76 (25%)
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253
+ VRYL + L L + I L+ +
Sbjct: 146 KVNDWTQLYKDVRYLYTENPKLLQLMELNSRRLDLNLNLIKKTIYKLVNDQLQELKDNER 205
Query: 254 HGQTALNIAQKLGYIS 269
+ I+ L Y+
Sbjct: 206 TPDWDITISSLLPYLK 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,706,114
Number of extensions: 290014
Number of successful extensions: 2326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 382
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)