Query psy5
Match_columns 128
No_of_seqs 115 out of 138
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 23:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3415|consensus 100.0 2E-41 4.3E-46 250.3 5.9 96 5-100 34-129 (129)
2 PF07019 Rab5ip: Rab5-interact 99.9 3E-26 6.5E-31 157.0 5.8 81 14-94 1-81 (81)
3 KOG4455|consensus 99.8 7.1E-19 1.5E-23 128.4 5.9 87 13-99 23-109 (110)
4 KOG3415|consensus 99.2 3.2E-11 7E-16 89.8 4.3 36 82-117 85-120 (129)
5 PF07019 Rab5ip: Rab5-interact 95.6 0.017 3.7E-07 39.2 3.5 69 26-117 9-78 (81)
6 PF00584 SecE: SecE/Sec61-gamm 85.6 1.7 3.7E-05 27.4 3.9 13 4-16 16-28 (57)
7 PF01102 Glycophorin_A: Glycop 82.0 1.6 3.4E-05 32.7 3.0 14 22-35 66-79 (122)
8 TIGR00964 secE_bact preprotein 80.5 3.4 7.3E-05 26.2 3.8 14 4-17 15-28 (55)
9 PRK07597 secE preprotein trans 79.8 3.7 8E-05 26.7 3.9 16 4-19 24-39 (64)
10 COG0690 SecE Preprotein transl 72.6 7.6 0.00017 26.2 4.0 28 5-32 35-62 (73)
11 TIGR00327 secE_euk_arch protei 66.2 9.9 0.00021 25.3 3.4 32 6-48 22-53 (61)
12 PRK09400 secE preprotein trans 64.2 6.8 0.00015 25.9 2.3 33 6-49 26-58 (61)
13 COG1836 Predicted membrane pro 53.6 47 0.001 27.8 6.0 88 22-112 39-131 (247)
14 PRK05740 secE preprotein trans 52.9 23 0.00051 24.8 3.6 13 4-16 50-62 (92)
15 PF01169 UPF0016: Uncharacteri 50.4 27 0.00057 23.7 3.5 42 3-44 10-54 (78)
16 COG5524 Bacteriorhodopsin [Gen 47.0 24 0.00052 30.1 3.4 28 77-105 191-218 (285)
17 PRK00665 petG cytochrome b6-f 46.2 9.2 0.0002 23.3 0.6 14 24-37 4-17 (37)
18 PRK13682 hypothetical protein; 45.4 59 0.0013 21.1 4.3 21 23-43 7-27 (51)
19 CHL00008 petG cytochrome b6/f 44.8 9.9 0.00021 23.2 0.6 14 24-37 4-17 (37)
20 COG5487 Small integral membran 43.4 84 0.0018 20.6 4.8 18 25-42 9-26 (54)
21 PF02529 PetG: Cytochrome B6-F 41.6 14 0.00031 22.5 1.0 14 24-37 4-17 (37)
22 COG2443 Sss1 Preprotein transl 40.0 29 0.00062 23.5 2.3 32 6-48 27-58 (65)
23 PF12676 DUF3796: Protein of u 38.4 14 0.0003 27.3 0.6 56 62-117 46-102 (118)
24 PF03188 Cytochrom_B561: Eukar 37.0 80 0.0017 22.3 4.5 88 8-97 29-130 (137)
25 PF07043 DUF1328: Protein of u 36.2 1E+02 0.0022 18.8 4.7 20 25-44 4-23 (39)
26 PF00440 TetR_N: Bacterial reg 35.8 26 0.00056 20.8 1.5 12 5-16 36-47 (47)
27 COG3333 Uncharacterized protei 34.8 81 0.0018 28.9 5.0 55 4-69 239-294 (504)
28 PTZ00478 Sec superfamily; Prov 32.2 42 0.00092 23.6 2.3 20 7-34 40-59 (81)
29 TIGR00317 cobS cobalamin 5'-ph 31.8 25 0.00055 28.3 1.2 42 84-128 63-104 (241)
30 PF09835 DUF2062: Uncharacteri 31.2 95 0.0021 22.7 4.2 28 20-47 21-48 (154)
31 PF02439 Adeno_E3_CR2: Adenovi 30.7 28 0.00061 21.3 1.0 14 20-33 3-16 (38)
32 PF10112 Halogen_Hydrol: 5-bro 30.2 1.4E+02 0.0031 22.8 5.2 21 20-40 10-30 (199)
33 COG3619 Predicted membrane pro 30.1 2.4E+02 0.0053 23.0 6.7 45 8-53 164-208 (226)
34 PF11085 YqhR: Conserved membr 29.6 1.4E+02 0.0029 23.9 4.9 84 22-114 25-143 (173)
35 TIGR03546 conserved hypothetic 29.3 1E+02 0.0023 23.7 4.2 29 20-48 18-46 (154)
36 COG2155 Uncharacterized conser 28.8 1.2E+02 0.0026 21.3 4.1 26 15-40 5-30 (79)
37 cd03131 GATase1_HTS Type 1 glu 28.8 42 0.0009 26.2 1.9 24 10-33 85-108 (175)
38 PF11313 DUF3116: Protein of u 27.7 43 0.00093 23.7 1.7 15 7-21 39-53 (85)
39 PF12666 PrgI: PrgI family pro 27.4 1.9E+02 0.0042 19.4 4.9 19 18-36 18-36 (93)
40 PRK11677 hypothetical protein; 27.2 54 0.0012 24.8 2.2 17 18-34 3-19 (134)
41 PF01940 DUF92: Integral membr 26.5 1E+02 0.0022 25.1 3.9 87 23-111 25-116 (226)
42 PF04070 DUF378: Domain of unk 25.7 1.5E+02 0.0033 19.8 4.0 27 14-40 2-28 (62)
43 KOG3498|consensus 23.6 78 0.0017 21.6 2.3 8 7-14 28-35 (67)
44 PF02375 JmjN: jmjN domain; I 22.9 56 0.0012 19.2 1.3 26 6-33 4-29 (34)
45 smart00545 JmjN Small domain f 21.1 1E+02 0.0022 18.8 2.2 27 6-34 6-32 (42)
46 PF08802 CytB6-F_Fe-S: Cytochr 21.0 1.1E+02 0.0023 18.8 2.3 27 20-46 9-35 (39)
47 PF13122 DUF3977: Protein of u 21.0 44 0.00095 23.2 0.7 21 85-106 40-60 (77)
48 cd08762 Cyt_b561_CYBASC3 Verte 20.6 1.4E+02 0.0029 23.8 3.4 29 5-33 62-90 (179)
49 COG2149 Predicted membrane pro 20.5 1E+02 0.0023 23.2 2.6 16 15-30 26-41 (120)
50 PF13172 PepSY_TM_1: PepSY-ass 20.4 1.6E+02 0.0034 16.6 2.8 27 14-40 3-29 (34)
No 1
>KOG3415|consensus
Probab=100.00 E-value=2e-41 Score=250.26 Aligned_cols=96 Identities=50% Similarity=0.935 Sum_probs=94.9
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhh
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFA 84 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa 84 (128)
+||||||++|||||+||++++++|++||++||+|+.|++.|+.+|+++.|.|+++++++|||+|||.||++|||||+|||
T Consensus 34 ~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kEGf~asfa 113 (129)
T KOG3415|consen 34 EWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKEGFMASFA 113 (129)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceeee
Q psy5 85 AFLCVDEDEYGGTFEM 100 (128)
Q Consensus 85 ~Fll~W~~~Y~~~h~~ 100 (128)
+|+++|++.|+..|++
T Consensus 114 ~FlvtWIi~Yt~~hyd 129 (129)
T KOG3415|consen 114 LFLVTWIIFYTLAHYD 129 (129)
T ss_pred HHHHHHHHHHhhhccC
Confidence 9999999999999974
No 2
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=99.93 E-value=3e-26 Score=156.99 Aligned_cols=81 Identities=36% Similarity=0.675 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhhhhhhhhhhc
Q psy5 14 DVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDE 93 (128)
Q Consensus 14 dvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa~Fll~W~~~ 93 (128)
|++||+||++|+++|++||++||||+.||++|++++.+++++++++.++.|++++++++|+.+||+++++++|+++|++.
T Consensus 1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~ 80 (81)
T PF07019_consen 1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy5 94 Y 94 (128)
Q Consensus 94 Y 94 (128)
|
T Consensus 81 Y 81 (81)
T PF07019_consen 81 Y 81 (81)
T ss_pred C
Confidence 7
No 3
>KOG4455|consensus
Probab=99.76 E-value=7.1e-19 Score=128.40 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhhhhhhhhhh
Q psy5 13 LDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDED 92 (128)
Q Consensus 13 ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa~Fll~W~~ 92 (128)
.+++.++|+..|+++|++||||||||+.||++|++.+...+.++..|.+..+.+||.++..+++|+++.++++|++.|+.
T Consensus 23 ~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~~f~~~f~~Gl~tyVl~Wtf 102 (110)
T KOG4455|consen 23 KKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRNLFTESFLGGLTTYVLAWTF 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhHHHHHHHhchHHHHHHHHHH
Confidence 47899999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred ccCceee
Q psy5 93 EYGGTFE 99 (128)
Q Consensus 93 ~Y~~~h~ 99 (128)
.|+.+|.
T Consensus 103 ~Y~lv~~ 109 (110)
T KOG4455|consen 103 FYGLVHV 109 (110)
T ss_pred Hhhhhcc
Confidence 9999885
No 4
>KOG3415|consensus
Probab=99.16 E-value=3.2e-11 Score=89.77 Aligned_cols=36 Identities=61% Similarity=1.058 Sum_probs=34.2
Q ss_pred hhhhhhhhhhhccCceeeeehhhhhhhhhHHhhhhh
Q psy5 82 SFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFS 117 (128)
Q Consensus 82 sfa~Fll~W~~~Y~~~h~~~~~~~~~~~~~~~~~~~ 117 (128)
-++.|+.+++++|++.|+++|||||||||.|||+|-
T Consensus 85 y~~~~~~VDEee~GG~weL~kEGf~asfa~FlvtWI 120 (129)
T KOG3415|consen 85 YYANFLKVDEEEYGGHWELLKEGFMASFALFLVTWI 120 (129)
T ss_pred HHHHHHhcCHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999995
No 5
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=95.57 E-value=0.017 Score=39.25 Aligned_cols=69 Identities=25% Similarity=0.496 Sum_probs=46.2
Q ss_pred HHHHHHhh-cccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhhhhhhhhhhccCceeeeehhh
Q psy5 26 ILGIVWGF-IPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEG 104 (128)
Q Consensus 26 i~Gi~aGi-LgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa~Fll~W~~~Y~~~h~~~~~~ 104 (128)
+.++++|+ -|+-|+.|+..|+..-......-+.-+. .....+...+...+++.+||
T Consensus 9 ~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~-----------------------~~~~~~~~~f~~~~~i~~~g 65 (81)
T PF07019_consen 9 IIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYA-----------------------KAGFPDEDYFGGPWEIFTEG 65 (81)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH-----------------------HhcCChhhhcCCHHHHHHhh
Confidence 45677775 4788888888777554433333222222 11122366677889999999
Q ss_pred hhhhhhHHhhhhh
Q psy5 105 FMTSFAAFLVSFS 117 (128)
Q Consensus 105 ~~~~~~~~~~~~~ 117 (128)
+++++++|+++|.
T Consensus 66 ~~~~l~~Fvl~Wt 78 (81)
T PF07019_consen 66 FFSGLSTFVLFWT 78 (81)
T ss_pred hhchHHHHHHHhh
Confidence 9999999999995
No 6
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=85.57 E-value=1.7 Score=27.44 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=10.1
Q ss_pred cccCChhhHHHHH
Q psy5 4 MIFVPQDEFLDVI 16 (128)
Q Consensus 4 ~~~~dKde~ldvI 16 (128)
-.||||+|+.+.-
T Consensus 16 v~WP~~~e~~~~t 28 (57)
T PF00584_consen 16 VTWPSRKELLKST 28 (57)
T ss_dssp HHCCCTHHHHHHH
T ss_pred hcCCCHHHHHHHH
Confidence 3699999987643
No 7
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=82.02 E-value=1.6 Score=32.65 Aligned_cols=14 Identities=50% Similarity=0.956 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcc
Q psy5 22 ILGIILGIVWGFIP 35 (128)
Q Consensus 22 ilali~Gi~aGiLg 35 (128)
+.+|+.|++||++|
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 57889999999876
No 8
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=80.45 E-value=3.4 Score=26.24 Aligned_cols=14 Identities=7% Similarity=0.356 Sum_probs=10.9
Q ss_pred cccCChhhHHHHHH
Q psy5 4 MIFVPQDEFLDVIY 17 (128)
Q Consensus 4 ~~~~dKde~ldvI~ 17 (128)
-.||+|+|+.+.--
T Consensus 15 V~WPt~~e~~~~t~ 28 (55)
T TIGR00964 15 VVWPSRKELITYTI 28 (55)
T ss_pred CcCcCHHHHHhHHH
Confidence 46999999987543
No 9
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=79.82 E-value=3.7 Score=26.69 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=11.4
Q ss_pred cccCChhhHHHHHHHH
Q psy5 4 MIFVPQDEFLDVIYWA 19 (128)
Q Consensus 4 ~~~~dKde~ldvI~w~ 19 (128)
-.||+|+|+.+..--+
T Consensus 24 V~WPs~~e~~~~t~~V 39 (64)
T PRK07597 24 VTWPTRKELVRSTIVV 39 (64)
T ss_pred CcCcCHHHHHhHHHHH
Confidence 4799999987654433
No 10
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=72.62 E-value=7.6 Score=26.25 Aligned_cols=28 Identities=7% Similarity=0.269 Sum_probs=17.9
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHh
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWG 32 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aG 32 (128)
.||+|+|+....-.+=-+.++++.+.+|
T Consensus 35 ~WPsrke~~~~t~~Vl~~v~~~s~~~~~ 62 (73)
T COG0690 35 VWPTRKELIRSTLIVLVVVAFFSLFLYG 62 (73)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999877655555444444444443
No 11
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=66.15 E-value=9.9 Score=25.26 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=19.2
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q psy5 6 FVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALT 48 (128)
Q Consensus 6 ~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~ 48 (128)
=|||||+.++ +-+.|+...++ |+.||+.+++.
T Consensus 22 KPd~~Ef~~i--------ak~t~iG~~i~---G~IGf~Ikli~ 53 (61)
T TIGR00327 22 KPDLEEYLKV--------AKVTGIGIIIV---GIIGYIIKIIA 53 (61)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHH
Confidence 4899998765 44555555554 44555555543
No 12
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=64.24 E-value=6.8 Score=25.93 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=20.8
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q psy5 6 FVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTN 49 (128)
Q Consensus 6 ~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~ 49 (128)
=|||||+.++ |-++|+...++ |+.||+.+++.+
T Consensus 26 KPd~~Ef~~i--------a~~~~iG~~i~---G~iGf~Ikli~~ 58 (61)
T PRK09400 26 KPTREEFLLV--------AKVTGLGILLI---GLIGFIIYLIMT 58 (61)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3899998764 34555554444 566777777655
No 13
>COG1836 Predicted membrane protein [Function unknown]
Probab=53.60 E-value=47 Score=27.83 Aligned_cols=88 Identities=20% Similarity=0.153 Sum_probs=55.5
Q ss_pred HHHHHHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHH--HhccCCccccc--cccceeeccchhhhhhhhhhhhhccCc
Q psy5 22 ILGIILGIV-WGFIPLRGFIGLALFALTNAGLLYLYIV--NYQCVDEDEYG--GTFEMAKEGFMTSFAAFLCVDEDEYGG 96 (128)
Q Consensus 22 ilali~Gi~-aGiLgLtG~~Gf~~F~~~~~~i~~~y~~--~~~~idee~fg--g~~el~~EGf~~sfa~Fll~W~~~Y~~ 96 (128)
..|.+.|.. +...|..++.-.++|++...+.+-..+. +-.+++|..=+ +.+.++-.|..+-+...+- ..|+.
T Consensus 39 ~~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE~~~g~R~~~NV~gn~l~~~l~av~~---~~~~~ 115 (247)
T COG1836 39 LSAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAEGRDGARSLENVLGNGLAALLFAVLY---AIYPD 115 (247)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccHHHHhhccHHHHHHHHHH---HhCCC
Confidence 456666654 4444577777778888888887776664 35667774333 3335665665443333332 45666
Q ss_pred eeeeehhhhhhhhhHH
Q psy5 97 TFEMAKEGFMTSFAAF 112 (128)
Q Consensus 97 ~h~~~~~~~~~~~~~~ 112 (128)
.|-.--+||+.|||+=
T Consensus 116 ~~~~~~~~~~~SvAta 131 (247)
T COG1836 116 PQLWFLGGFAASVATA 131 (247)
T ss_pred chHHHHHHHHHHHHHH
Confidence 6667789999999863
No 14
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=52.93 E-value=23 Score=24.84 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=10.2
Q ss_pred cccCChhhHHHHH
Q psy5 4 MIFVPQDEFLDVI 16 (128)
Q Consensus 4 ~~~~dKde~ldvI 16 (128)
-.||||+|..+.-
T Consensus 50 V~WPtr~e~~~~t 62 (92)
T PRK05740 50 VVWPTRQETLQTT 62 (92)
T ss_pred ccCcCHHHHHhHH
Confidence 4699999987643
No 15
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=50.41 E-value=27 Score=23.75 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=32.8
Q ss_pred ccccCChhhHHHHHHHHH---HHHHHHHHHHHhhcccccHHHHHH
Q psy5 3 LMIFVPQDEFLDVIYWAR---QILGIILGIVWGFIPLRGFIGLAL 44 (128)
Q Consensus 3 ~~~~~dKde~ldvI~w~R---qilali~Gi~aGiLgLtG~~Gf~~ 44 (128)
++||-||-|+....-=.| +-..+++|...|..-.+++--.+.
T Consensus 10 laE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G 54 (78)
T PF01169_consen 10 LAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLG 54 (78)
T ss_pred HHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999998776554 588999999999887776654443
No 16
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=47.01 E-value=24 Score=30.06 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=24.3
Q ss_pred ccchhhhhhhhhhhhhccCceeeeehhhh
Q psy5 77 EGFMTSFAAFLCVDEDEYGGTFEMAKEGF 105 (128)
Q Consensus 77 EGf~~sfa~Fll~W~~~Y~~~h~~~~~~~ 105 (128)
..|.......++.|+. |..+|.++.||.
T Consensus 191 ~~F~~l~~~~vvLWl~-YPivW~ig~~G~ 218 (285)
T COG5524 191 SLFLTLRNYTVVLWLG-YPIVWLIGPGGN 218 (285)
T ss_pred HHHHHHHHHHHHHHHh-ccceeEEccccC
Confidence 3566777888899999 999999999999
No 17
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=46.21 E-value=9.2 Score=23.32 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcccc
Q psy5 24 GIILGIVWGFIPLR 37 (128)
Q Consensus 24 ali~Gi~aGiLgLt 37 (128)
.+++||+.|.+|.|
T Consensus 4 plL~GiVLGlipiT 17 (37)
T PRK00665 4 PLLCGIVLGLIPVT 17 (37)
T ss_pred hhhhhHHHHhHHHH
Confidence 47899999999987
No 18
>PRK13682 hypothetical protein; Provisional
Probab=45.43 E-value=59 Score=21.05 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcccccHHHHH
Q psy5 23 LGIILGIVWGFIPLRGFIGLA 43 (128)
Q Consensus 23 lali~Gi~aGiLgLtG~~Gf~ 43 (128)
+=++..+++|++|.+|+-|-.
T Consensus 7 iFliiA~iA~~lGF~GiAg~a 27 (51)
T PRK13682 7 IFLVIALIAAVLGFGGIAGAA 27 (51)
T ss_pred HHHHHHHHHHHhccchHHHHH
Confidence 346778899999999998843
No 19
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=44.77 E-value=9.9 Score=23.17 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcccc
Q psy5 24 GIILGIVWGFIPLR 37 (128)
Q Consensus 24 ali~Gi~aGiLgLt 37 (128)
.+++||+.|.+|.|
T Consensus 4 ~lL~GiVLGlipvT 17 (37)
T CHL00008 4 VLLFGIVLGLIPIT 17 (37)
T ss_pred hhhhhHHHHhHHHH
Confidence 47899999999987
No 20
>COG5487 Small integral membrane protein [Function unknown]
Probab=43.37 E-value=84 Score=20.58 Aligned_cols=18 Identities=17% Similarity=0.560 Sum_probs=14.1
Q ss_pred HHHHHHHhhcccccHHHH
Q psy5 25 IILGIVWGFIPLRGFIGL 42 (128)
Q Consensus 25 li~Gi~aGiLgLtG~~Gf 42 (128)
++.-+++|.+|..|+.|-
T Consensus 9 lvialIa~~lGFgGiaga 26 (54)
T COG5487 9 LVIALIAGALGFGGIAGA 26 (54)
T ss_pred HHHHHHHHHhCcccHHHH
Confidence 466778889999988764
No 21
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=41.55 E-value=14 Score=22.48 Aligned_cols=14 Identities=43% Similarity=0.880 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcccc
Q psy5 24 GIILGIVWGFIPLR 37 (128)
Q Consensus 24 ali~Gi~aGiLgLt 37 (128)
.+++|++.|.+|.|
T Consensus 4 plL~GiVlGli~vt 17 (37)
T PF02529_consen 4 PLLSGIVLGLIPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHH
Confidence 57899999999977
No 22
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=39.96 E-value=29 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=20.1
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q psy5 6 FVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALT 48 (128)
Q Consensus 6 ~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~ 48 (128)
=||+||++.+ +-+.|+...++ |+.||+.++.-
T Consensus 27 KP~~eEy~~~--------aKi~~~Gi~li---G~IGfiI~li~ 58 (65)
T COG2443 27 KPDWEEYSKI--------AKITGLGILLI---GIIGFIIYLIM 58 (65)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHH
Confidence 3888888765 34555555444 56677777654
No 23
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=38.43 E-value=14 Score=27.28 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=31.3
Q ss_pred cCCcccccccc-ceeeccchhhhhhhhhhhhhccCceeeeehhhhhhhhhHHhhhhh
Q psy5 62 CVDEDEYGGTF-EMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFS 117 (128)
Q Consensus 62 ~idee~fgg~~-el~~EGf~~sfa~Fll~W~~~Y~~~h~~~~~~~~~~~~~~~~~~~ 117 (128)
..||....... .-......+-.+++++.+....-..++.-.-...-++|.-+++..
T Consensus 46 ~~DErf~~n~~kAa~~af~v~l~~~~ii~l~~~i~~~~~~~~~~i~i~~~i~l~vf~ 102 (118)
T PF12676_consen 46 IPDERFYENVRKAASRAFFVALILLFIILLISMIFDNLELITILIAIAFAIALLVFA 102 (118)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 44555444332 234444555566666666665555555556666667776666543
No 24
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=36.96 E-value=80 Score=22.27 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=49.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcc--------------cccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccc
Q psy5 8 PQDEFLDVIYWARQILGIILGIVWGFIP--------------LRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFE 73 (128)
Q Consensus 8 dKde~ldvI~w~Rqilali~Gi~aGiLg--------------LtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~e 73 (128)
-+++-..-+|++-|.+++++.++..++. .-+..|++.+++...=....+...+.+..++.....+.
T Consensus 29 ~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~ 108 (137)
T PF03188_consen 29 KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWN 108 (137)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHH
Confidence 3556677899999999988877766653 34566666665543333333444333222222222222
Q ss_pred eeeccchhhhhhhhhhhhhccCce
Q psy5 74 MAKEGFMTSFAAFLCVDEDEYGGT 97 (128)
Q Consensus 74 l~~EGf~~sfa~Fll~W~~~Y~~~ 97 (128)
-. --..|...+++.+...+.+.
T Consensus 109 ~~--H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 109 KW--HRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHH
Confidence 22 33457777777766655543
No 25
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=36.18 E-value=1e+02 Score=18.82 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=16.4
Q ss_pred HHHHHHHhhcccccHHHHHH
Q psy5 25 IILGIVWGFIPLRGFIGLAL 44 (128)
Q Consensus 25 li~Gi~aGiLgLtG~~Gf~~ 44 (128)
++..+++|++|.+|.-|-..
T Consensus 4 liiAliAg~lGF~Giag~a~ 23 (39)
T PF07043_consen 4 LIIALIAGVLGFGGIAGTAA 23 (39)
T ss_pred HHHHHHHHHcCcccHHHHHH
Confidence 56788999999999987644
No 26
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=35.76 E-value=26 Score=20.81 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.8
Q ss_pred ccCChhhHHHHH
Q psy5 5 IFVPQDEFLDVI 16 (128)
Q Consensus 5 ~~~dKde~ldvI 16 (128)
.|+||||++..+
T Consensus 36 ~f~~k~~l~~a~ 47 (47)
T PF00440_consen 36 YFPSKDDLLRAV 47 (47)
T ss_dssp HCSSHHHHHHHH
T ss_pred HcCCHHHHHhhC
Confidence 589999998764
No 27
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.77 E-value=81 Score=28.93 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=39.2
Q ss_pred cccCChhhHHHHHH-HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Q psy5 4 MIFVPQDEFLDVIY-WARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYG 69 (128)
Q Consensus 4 ~~~~dKde~ldvI~-w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fg 69 (128)
+.|++|+|+.+... |.| +-++|...|++|=.|-. +.++++|-.-.|.-|.+ |+||
T Consensus 239 ~~~~s~~~~~~~~~~~lR---gt~iG~~~GvlPg~Gat-------iAsFlsY~~ekr~sk~~-eeFG 294 (504)
T COG3333 239 RVWLSKKEFKRAWPTWLR---GTLIGFLLGVLPGGGAT-------IASFLSYSTEKRLSKKP-EEFG 294 (504)
T ss_pred ccccCHHHHHHhhHHHHH---HhhhhhheecccCccHH-------HHHHHHHHHHHhhccCh-hhcC
Confidence 57999999998643 555 56789999999988864 34455665665555554 6777
No 28
>PTZ00478 Sec superfamily; Provisional
Probab=32.23 E-value=42 Score=23.60 Aligned_cols=20 Identities=5% Similarity=0.170 Sum_probs=11.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy5 7 VPQDEFLDVIYWARQILGIILGIVWGFI 34 (128)
Q Consensus 7 ~dKde~ldvI~w~Rqilali~Gi~aGiL 34 (128)
|||+|+.++ |-+.|+...++
T Consensus 40 PdrkEf~ki--------akat~iGf~im 59 (81)
T PTZ00478 40 PDAKEYTNI--------AYACSVGFFIM 59 (81)
T ss_pred CCHHHHHHH--------HHHHHHHHHHH
Confidence 778877654 34455555444
No 29
>TIGR00317 cobS cobalamin 5'-phosphate synthase/cobalamin synthase. cobS is involved with cobalamin biosynthesis in part III of colbalmin biosynthesis. The enzyme catyalzes the reactions adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP and adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP. The protein product is associated with a large complex of proteins and is induced by cobinamide.
Probab=31.79 E-value=25 Score=28.31 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=34.3
Q ss_pred hhhhhhhhhccCceeeeehhhhhhhhhHHhhhhhhhhhhhhhccC
Q psy5 84 AAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKDK 128 (128)
Q Consensus 84 a~Fll~W~~~Y~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (128)
+.-+..|....++.|+| |++=..=+|+..++.+.-++|+||.
T Consensus 63 ~l~l~~~~~lTG~lHlD---GLaD~~Dgl~s~~~~er~L~IMKDs 104 (241)
T TIGR00317 63 VVLYLFIEGLTGGHHLD---GLADFGDGLFAPGSKERKLEAMKDS 104 (241)
T ss_pred HHHHHHHHHHHccchhh---hhHHHhhHhccCCCHHHHHHHHHcc
Confidence 34456777888888975 8888888888999999999999994
No 30
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=31.19 E-value=95 Score=22.75 Aligned_cols=28 Identities=32% Similarity=0.651 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHH
Q psy5 20 RQILGIILGIVWGFIPLRGFIGLALFAL 47 (128)
Q Consensus 20 Rqilali~Gi~aGiLgLtG~~Gf~~F~~ 47 (128)
+-..|+.+|+..|++|.-|+.-++..++
T Consensus 21 ~iA~g~AiG~fig~~P~~g~~~~l~~~l 48 (154)
T PF09835_consen 21 SIALGFAIGVFIGFLPIFGLQTVLAIAL 48 (154)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3467899999999999988775555433
No 31
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=30.74 E-value=28 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhh
Q psy5 20 RQILGIILGIVWGF 33 (128)
Q Consensus 20 Rqilali~Gi~aGi 33 (128)
++.+|+++|+++|+
T Consensus 3 ~s~IaIIv~V~vg~ 16 (38)
T PF02439_consen 3 SSTIAIIVAVVVGM 16 (38)
T ss_pred cchhhHHHHHHHHH
Confidence 35678888888775
No 32
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.16 E-value=1.4e+02 Score=22.84 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhcccccHH
Q psy5 20 RQILGIILGIVWGFIPLRGFI 40 (128)
Q Consensus 20 Rqilali~Gi~aGiLgLtG~~ 40 (128)
|.++|++++++.++++.-|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566777776666666665443
No 33
>COG3619 Predicted membrane protein [Function unknown]
Probab=30.08 E-value=2.4e+02 Score=22.98 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Q psy5 8 PQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLL 53 (128)
Q Consensus 8 dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~ 53 (128)
||+-.-+.+-+.--+++.++|.++|.+.-.=+...++.+ +...+.
T Consensus 164 ~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~-~~~~i~ 208 (226)
T COG3619 164 DKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWV-VAALIL 208 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHH
Confidence 556666777777778889999999987544444444433 333333
No 34
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=29.57 E-value=1.4e+02 Score=23.85 Aligned_cols=84 Identities=15% Similarity=0.321 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhccc-----------------------------ccHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc
Q psy5 22 ILGIILGIVWGFIPL-----------------------------RGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTF 72 (128)
Q Consensus 22 ilali~Gi~aGiLgL-----------------------------tG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~ 72 (128)
.++...|+.||.++. --+.|++++.++|.+.+.+|+.-+.++. |+|
T Consensus 25 ~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~-----g~W 99 (173)
T PF11085_consen 25 EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFK-----GPW 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccc
Confidence 578889999998763 1246888899999999999998666653 344
Q ss_pred ceeeccchhhhhhhhhhhhhcc------CceeeeehhhhhhhhhHHhh
Q psy5 73 EMAKEGFMTSFAAFLCVDEDEY------GGTFEMAKEGFMTSFAAFLV 114 (128)
Q Consensus 73 el~~EGf~~sfa~Fll~W~~~Y------~~~h~~~~~~~~~~~~~~~~ 114 (128)
.|..=|.+...++-...- ..++.+.++=..|.+..|+.
T Consensus 100 ----~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiL 143 (173)
T PF11085_consen 100 ----PGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYIL 143 (173)
T ss_pred ----hHHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHH
Confidence 455555555443333222 23677888888888887763
No 35
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=29.34 E-value=1e+02 Score=23.66 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHH
Q psy5 20 RQILGIILGIVWGFIPLRGFIGLALFALT 48 (128)
Q Consensus 20 Rqilali~Gi~aGiLgLtG~~Gf~~F~~~ 48 (128)
|-..|+.+|+..|+.|+-|+.-++..+++
T Consensus 18 ~iA~g~a~Gvf~g~~P~~glh~~~~~~la 46 (154)
T TIGR03546 18 QLALAVALGMILGLTPFLNLHNIALLFLV 46 (154)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 34678999999999999888766554443
No 36
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=1.2e+02 Score=21.26 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccHH
Q psy5 15 VIYWARQILGIILGIVWGFIPLRGFI 40 (128)
Q Consensus 15 vI~w~Rqilali~Gi~aGiLgLtG~~ 40 (128)
.+.-.-..+.++.|+=||++|++++-
T Consensus 5 ~i~~~sllLvIiGalNWGLvG~f~fd 30 (79)
T COG2155 5 IIRGLSLLLVILGALNWGLVGLFGFD 30 (79)
T ss_pred HHHHHHHHHHHHhhhhhceeeeehhh
Confidence 34445567788889999999999964
No 37
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=28.76 E-value=42 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy5 10 DEFLDVIYWARQILGIILGIVWGF 33 (128)
Q Consensus 10 de~ldvI~w~Rqilali~Gi~aGi 33 (128)
||+.+.+.|.|+-.--.+|+.||.
T Consensus 85 ~El~~i~dwa~~~v~stl~iCWga 108 (175)
T cd03131 85 EELTEILDWAKTHVTSTLFSCWAA 108 (175)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHH
Confidence 489999999999888899999984
No 38
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=27.70 E-value=43 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.815 Sum_probs=12.7
Q ss_pred CChhhHHHHHHHHHH
Q psy5 7 VPQDEFLDVIYWARQ 21 (128)
Q Consensus 7 ~dKde~ldvI~w~Rq 21 (128)
.||.|++-++||+-+
T Consensus 39 ~TKNelL~~vYWLE~ 53 (85)
T PF11313_consen 39 FTKNELLYTVYWLEE 53 (85)
T ss_pred ccHHHHHHHHHHHhh
Confidence 589999999999743
No 39
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=27.45 E-value=1.9e+02 Score=19.36 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhccc
Q psy5 18 WARQILGIILGIVWGFIPL 36 (128)
Q Consensus 18 w~Rqilali~Gi~aGiLgL 36 (128)
-.||.+.+++|++.|+.-.
T Consensus 18 T~RQl~~l~~~~~~~~~~~ 36 (93)
T PF12666_consen 18 TLRQLICLAIGALVGVGVY 36 (93)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6899999999988875433
No 40
>PRK11677 hypothetical protein; Provisional
Probab=27.20 E-value=54 Score=24.81 Aligned_cols=17 Identities=29% Similarity=1.007 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy5 18 WARQILGIILGIVWGFI 34 (128)
Q Consensus 18 w~Rqilali~Gi~aGiL 34 (128)
|+=-++++|+|++.|.+
T Consensus 3 W~~a~i~livG~iiG~~ 19 (134)
T PRK11677 3 WEYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666777777777654
No 41
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=26.53 E-value=1e+02 Score=25.10 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=42.7
Q ss_pred HHHHHHH-HHhhcccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccccc--ceeeccchhhhhhhhhhhhhccCce
Q psy5 23 LGIILGI-VWGFIPLRGFIGLALFALTNAGLLYLYIVNYQC--VDEDEYGGTF--EMAKEGFMTSFAAFLCVDEDEYGGT 97 (128)
Q Consensus 23 lali~Gi-~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~--idee~fgg~~--el~~EGf~~sfa~Fll~W~~~Y~~~ 97 (128)
.|+++|. ++..-|..++.-++.|++.+...+.+-..+=.+ .+|+.=+.|+ +++-.|..+....-+-.. .+...
T Consensus 25 aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~QVlaNg~~a~~~al~~~~--~~~~~ 102 (226)
T PF01940_consen 25 AAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQVLANGGVAALCALLYAF--FPSTP 102 (226)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHHhhhccHHHHHHHHHHHH--hcccc
Confidence 4556666 556666677777777887777666543321111 1222223332 566566544433322111 11122
Q ss_pred eeeehhhhhhhhhH
Q psy5 98 FEMAKEGFMTSFAA 111 (128)
Q Consensus 98 h~~~~~~~~~~~~~ 111 (128)
+..---+|..|+|+
T Consensus 103 ~~~~~~~~~~s~A~ 116 (226)
T PF01940_consen 103 APLLLLAFLGSIAA 116 (226)
T ss_pred hHHHHHHHHHHHHH
Confidence 33334566666665
No 42
>PF04070 DUF378: Domain of unknown function (DUF378); InterPro: IPR007211 These are predicted membrane proteins of unknown function. The majority of the proteins have two predicted transmembrane regions.
Probab=25.68 E-value=1.5e+02 Score=19.76 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccHH
Q psy5 14 DVIYWARQILGIILGIVWGFIPLRGFI 40 (128)
Q Consensus 14 dvI~w~Rqilali~Gi~aGiLgLtG~~ 40 (128)
+.+.|+--++.++-|+=||++|+-++-
T Consensus 2 k~ld~ialiLvIIGalNWGliGlf~~n 28 (62)
T PF04070_consen 2 KILDKIALILVIIGALNWGLIGLFNFN 28 (62)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467788889999999999999986543
No 43
>KOG3498|consensus
Probab=23.63 E-value=78 Score=21.60 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=4.9
Q ss_pred CChhhHHH
Q psy5 7 VPQDEFLD 14 (128)
Q Consensus 7 ~dKde~ld 14 (128)
||+.|+.+
T Consensus 28 PdrKEf~k 35 (67)
T KOG3498|consen 28 PDRKEFTK 35 (67)
T ss_pred CcHHHHHH
Confidence 66666644
No 44
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.94 E-value=56 Score=19.19 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=16.1
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy5 6 FVPQDEFLDVIYWARQILGIILGIVWGF 33 (128)
Q Consensus 6 ~~dKde~ldvI~w~Rqilali~Gi~aGi 33 (128)
-|+.+||-|-+.+++++-+ .|--.|+
T Consensus 4 ~Pt~eEF~dp~~yi~~i~~--~g~~~Gi 29 (34)
T PF02375_consen 4 YPTMEEFKDPIKYISSIEP--EGEKYGI 29 (34)
T ss_dssp ---HHHHS-HHHHHHHHHH--TTGGGSE
T ss_pred cCCHHHHhCHHHHHHHHHH--HHHHCCE
Confidence 3789999999999999665 3334444
No 45
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=21.05 E-value=1e+02 Score=18.85 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=21.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy5 6 FVPQDEFLDVIYWARQILGIILGIVWGFI 34 (128)
Q Consensus 6 ~~dKde~ldvI~w~Rqilali~Gi~aGiL 34 (128)
-||.+|+.|-+.+++++-.. |--.|+.
T Consensus 6 ~Pt~eEF~Dp~~yi~~i~~~--~~~yGi~ 32 (42)
T smart00545 6 YPTMEEFKDPLAYISKIRPQ--AEKYGIC 32 (42)
T ss_pred cCCHHHHHCHHHHHHHHHHH--HhhCCEE
Confidence 37899999999999998773 6666654
No 46
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=21.04 E-value=1.1e+02 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHH
Q psy5 20 RQILGIILGIVWGFIPLRGFIGLALFA 46 (128)
Q Consensus 20 Rqilali~Gi~aGiLgLtG~~Gf~~F~ 46 (128)
||++..+.|-+.+..-..-++..+-|+
T Consensus 9 R~lmN~ll~Gava~~a~~~lyP~~~ff 35 (39)
T PF08802_consen 9 RQLMNLLLGGAVAVPAGGMLYPYVKFF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhhhheeEe
Confidence 788887776655544444444444443
No 47
>PF13122 DUF3977: Protein of unknown function (DUF3977)
Probab=21.04 E-value=44 Score=23.24 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=16.6
Q ss_pred hhhhhhhhccCceeeeehhhhh
Q psy5 85 AFLCVDEDEYGGTFEMAKEGFM 106 (128)
Q Consensus 85 ~Fll~W~~~Y~~~h~~~~~~~~ 106 (128)
.|+-+|. -+++.-.++||||-
T Consensus 40 ~Y~RiWf-rktc~I~D~KEGFK 60 (77)
T PF13122_consen 40 LYLRIWF-RKTCFIFDTKEGFK 60 (77)
T ss_pred eeeeeee-ccEEEEEEcHHHHH
Confidence 4667774 57888999999984
No 48
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.60 E-value=1.4e+02 Score=23.77 Aligned_cols=29 Identities=10% Similarity=-0.006 Sum_probs=23.4
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGF 33 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGi 33 (128)
.|+.+.+..+.+|++-|.+|+++|++.-.
T Consensus 62 ~~~~~k~~~K~~H~~L~~~Al~~~vvGl~ 90 (179)
T cd08762 62 TWGGPKLPWKLLHAGLLLLAFILTVIGLC 90 (179)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778899999999999999887543
No 49
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.47 E-value=1e+02 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5 15 VIYWARQILGIILGIV 30 (128)
Q Consensus 15 vI~w~Rqilali~Gi~ 30 (128)
-+-|+|+.+|++++-+
T Consensus 26 FLAWiRTsLallafGv 41 (120)
T COG2149 26 FLAWIRTSLALLAFGV 41 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4679999999987643
No 50
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=20.41 E-value=1.6e+02 Score=16.65 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccHH
Q psy5 14 DVIYWARQILGIILGIVWGFIPLRGFI 40 (128)
Q Consensus 14 dvI~w~Rqilali~Gi~aGiLgLtG~~ 40 (128)
+..+++...+|+++++..=++.+||..
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888877777777753
Done!