Query psy5
Match_columns 128
No_of_seqs 115 out of 138
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 23:12:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 83.6 1.8 6.3E-05 27.7 4.5 34 5-49 23-56 (61)
2 1rh5_B Preprotein translocase 76.1 4.2 0.00014 27.0 4.4 33 5-48 27-59 (74)
3 2zjs_E Preprotein translocase 73.7 3.7 0.00013 25.6 3.5 13 4-16 19-31 (60)
4 2ww9_B Protein transport prote 72.5 4 0.00014 27.6 3.7 28 5-40 40-67 (80)
5 2kxh_B Peptide of FAR upstream 65.2 4.3 0.00015 23.0 2.2 19 9-27 7-25 (31)
6 3dl8_C SECE; RECA-type ATPase 62.0 5.1 0.00017 25.4 2.4 11 5-15 19-29 (65)
7 2wwb_B SEC61gamma, protein tra 50.5 4.6 0.00016 26.4 0.7 31 5-46 26-56 (68)
8 1q90_G Cytochrome B6F complex 48.7 6.1 0.00021 23.2 1.0 14 24-37 4-17 (37)
9 2l34_A TYRO protein tyrosine k 42.2 19 0.00064 20.3 2.3 24 24-47 7-30 (33)
10 3te3_A Polycystic kidney disea 41.1 43 0.0015 19.7 3.9 27 5-31 2-28 (39)
11 3din_D Preprotein translocase 39.1 4.6 0.00016 25.6 -0.7 10 5-14 19-28 (65)
12 3j01_B Preprotein translocase 38.0 17 0.00058 25.7 2.1 11 5-15 72-82 (116)
13 4gif_A Polycystic kidney disea 35.2 58 0.002 19.7 3.9 27 5-31 2-28 (45)
14 1vf5_G Protein PET G; photosyn 34.3 6.7 0.00023 23.1 -0.4 14 24-37 4-17 (37)
15 1afo_A Glycophorin A; integral 30.3 23 0.0008 21.0 1.5 14 22-35 12-25 (40)
16 3hrn_A Transient receptor pote 25.0 98 0.0033 20.0 3.9 27 5-31 1-27 (64)
17 2l2t_A Receptor tyrosine-prote 23.0 57 0.002 19.5 2.3 13 23-35 10-22 (44)
18 2k1k_A Ephrin type-A receptor 20.6 78 0.0027 18.1 2.5 9 25-33 12-20 (38)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=83.64 E-value=1.8 Score=27.73 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=21.5
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTN 49 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~ 49 (128)
.=|||||+..+ +-+.|+...++ |+.||+.+++..
T Consensus 23 ~KPd~~Ef~~i--------ak~~~iG~~i~---G~iGf~Ikli~~ 56 (61)
T 3mp7_B 23 KKPNWATYKRA--------AKITGLGIILI---GLIGMLIRIVGI 56 (61)
T ss_dssp CCCCTTHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34899998764 34555555554 566777776554
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=76.15 E-value=4.2 Score=27.01 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALT 48 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~ 48 (128)
.=|||||+..+ |-++|+...++ |+.||+.+++.
T Consensus 27 ~KPdr~EF~~i--------ak~~~iG~~im---G~IGfiIkli~ 59 (74)
T 1rh5_B 27 KKPTKDEYLAV--------AKVTALGISLL---GIIGYIIHVPA 59 (74)
T ss_dssp ECCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cCCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHH
Confidence 34899998764 45566665555 45666666644
No 3
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=73.67 E-value=3.7 Score=25.62 Aligned_cols=13 Identities=0% Similarity=0.245 Sum_probs=10.1
Q ss_pred cccCChhhHHHHH
Q psy5 4 MIFVPQDEFLDVI 16 (128)
Q Consensus 4 ~~~~dKde~ldvI 16 (128)
-.||||+|+.+.-
T Consensus 19 V~WPtr~e~~~~t 31 (60)
T 2zjs_E 19 VTWPTREQVVEGT 31 (60)
T ss_dssp CCCSCSSSHHHHH
T ss_pred ccCcCHHHHHHHH
Confidence 3699999987643
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=72.47 E-value=4 Score=27.59 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=17.7
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFI 40 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~ 40 (128)
.=|||||+.++ +-+.|+...++|+-|+.
T Consensus 40 ~KPdr~Ef~~i--------ak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 40 KKPDLKEYTKI--------VKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp CCCCHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 34899998764 45666666666544433
No 5
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=65.24 E-value=4.3 Score=23.03 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy5 9 QDEFLDVIYWARQILGIIL 27 (128)
Q Consensus 9 Kde~ldvI~w~Rqilali~ 27 (128)
+|.|.|+++..||+.|=+-
T Consensus 7 ~daFadA~~RaRQIaAKig 25 (31)
T 2kxh_B 7 NDAFKDALQRARQIAAKIG 25 (31)
T ss_dssp SSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5899999999999987553
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=61.97 E-value=5.1 Score=25.45 Aligned_cols=11 Identities=0% Similarity=0.280 Sum_probs=0.9
Q ss_pred ccCChhhHHHH
Q psy5 5 IFVPQDEFLDV 15 (128)
Q Consensus 5 ~~~dKde~ldv 15 (128)
.||||+|+.+.
T Consensus 19 ~WPtr~e~~~~ 29 (65)
T 3dl8_C 19 VWPSRELVVKA 29 (65)
T ss_dssp ---------CH
T ss_pred cCcCHHHHHHH
Confidence 69999998653
No 7
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=50.48 E-value=4.6 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=17.9
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFA 46 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~ 46 (128)
.=|||||+.++ +-+.|+...++| +.||+..+
T Consensus 26 ~KPdr~Ef~~i--------ak~~~iG~~i~G---~IGf~Ikl 56 (68)
T 2wwb_B 26 TKPDRKEFQKI--------AMATAIGFAIMG---FIGFFVKL 56 (68)
T ss_dssp CCCCTHHHHHH--------HHHSSHHHHHHH---HHHHHHHH
T ss_pred cCCCHHHHHHH--------HHHHHHHHHHHH---HHHHHHHH
Confidence 34899998764 445555555544 44444443
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=48.66 E-value=6.1 Score=23.24 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcccc
Q psy5 24 GIILGIVWGFIPLR 37 (128)
Q Consensus 24 ali~Gi~aGiLgLt 37 (128)
.+++||+.|.+|.|
T Consensus 4 ~lL~GIVlGlipvt 17 (37)
T 1q90_G 4 PLLCGIVLGLVPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 47899999999987
No 9
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=42.18 E-value=19 Score=20.33 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcccccHHHHHHHHH
Q psy5 24 GIILGIVWGFIPLRGFIGLALFAL 47 (128)
Q Consensus 24 ali~Gi~aGiLgLtG~~Gf~~F~~ 47 (128)
+.++|++.|-+-.|.+.+.+.|+.
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhe
Confidence 567888888888888887777763
No 10
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=41.09 E-value=43 Score=19.67 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.4
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVW 31 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~a 31 (128)
.|-++|||......+.|+=..+.||+-
T Consensus 2 ~~Vs~eeF~~L~rRVlqlE~~l~gI~S 28 (39)
T 3te3_A 2 GWVSGEEFYMLTRRVLQLETVLEGVVS 28 (39)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998864
No 11
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=39.12 E-value=4.6 Score=25.64 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=7.1
Q ss_pred ccCChhhHHH
Q psy5 5 IFVPQDEFLD 14 (128)
Q Consensus 5 ~~~dKde~ld 14 (128)
.||||+|+.+
T Consensus 19 ~WPtr~e~~~ 28 (65)
T 3din_D 19 SWPSRKELLT 28 (65)
T ss_dssp HHHHCCCCCT
T ss_pred cCcCHHHHHh
Confidence 4888888654
No 12
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=38.00 E-value=17 Score=25.71 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=8.9
Q ss_pred ccCChhhHHHH
Q psy5 5 IFVPQDEFLDV 15 (128)
Q Consensus 5 ~~~dKde~ldv 15 (128)
.||||+|..+.
T Consensus 72 ~WPtr~E~~~~ 82 (116)
T 3j01_B 72 IWPTRQETLHT 82 (116)
T ss_dssp HTTTTTSCHHH
T ss_pred eCcCHHHHHhH
Confidence 59999998764
No 13
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=35.17 E-value=58 Score=19.69 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.5
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVW 31 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~a 31 (128)
.|-++|||......+.|+=..+.||+-
T Consensus 2 ~~Vs~eeF~~L~rRVlqlE~~l~gI~S 28 (45)
T 4gif_A 2 GWVSGEEFYMLTRRVLQLETVLEGVVS 28 (45)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998864
No 14
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=34.26 E-value=6.7 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=8.0
Q ss_pred HHHHHHHHhhcccc
Q psy5 24 GIILGIVWGFIPLR 37 (128)
Q Consensus 24 ali~Gi~aGiLgLt 37 (128)
.+++||+.|.+|.|
T Consensus 4 plL~GIVlGlipvt 17 (37)
T 1vf5_G 4 PLLDGLVLGLVFAT 17 (37)
T ss_dssp -----CHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46889999999977
No 15
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=30.31 E-value=23 Score=21.02 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhcc
Q psy5 22 ILGIILGIVWGFIP 35 (128)
Q Consensus 22 ilali~Gi~aGiLg 35 (128)
+..++.|+.||++|
T Consensus 12 i~lII~~vmaGiIG 25 (40)
T 1afo_A 12 ITLIIFGVMAGVIG 25 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45678888888875
No 16
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=25.04 E-value=98 Score=20.00 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=23.9
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVW 31 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~a 31 (128)
.|.++|||......+.|+=..+.||+-
T Consensus 1 ~~VS~EEF~~L~rRVlqLE~sl~gI~S 27 (64)
T 3hrn_A 1 MGVSYEEFQVLVRRVDRMEHSIGSIVS 27 (64)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999998864
No 17
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.01 E-value=57 Score=19.46 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhcc
Q psy5 23 LGIILGIVWGFIP 35 (128)
Q Consensus 23 lali~Gi~aGiLg 35 (128)
-++..|++-|++.
T Consensus 10 ~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 10 PLIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHH
Confidence 3455555555443
No 18
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.57 E-value=78 Score=18.07 Aligned_cols=9 Identities=22% Similarity=0.814 Sum_probs=4.3
Q ss_pred HHHHHHHhh
Q psy5 25 IILGIVWGF 33 (128)
Q Consensus 25 li~Gi~aGi 33 (128)
.++|++.|.
T Consensus 12 aIAGiVvG~ 20 (38)
T 2k1k_A 12 EIVAVIFGL 20 (38)
T ss_dssp HHHHHHHHH
T ss_pred ceeeeehHH
Confidence 345555544
Done!