Query psy5
Match_columns 128
No_of_seqs 115 out of 138
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 23:12:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 73.7 2.7 0.0002 25.2 4.4 34 5-49 16-49 (56)
2 d1q90g_ f.23.26.1 (G:) PetG su 64.7 1.1 7.9E-05 23.9 1.0 14 24-37 4-17 (30)
3 d2gena1 a.4.1.9 (A:6-75) Proba 28.9 13 0.00092 21.2 1.7 13 5-17 40-52 (70)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 28.8 32 0.0023 17.8 3.2 20 14-34 4-23 (32)
5 d2vkva1 a.4.1.9 (A:6-67) Tetra 23.9 16 0.0012 20.5 1.5 12 5-16 39-50 (62)
6 d2g3ba1 a.4.1.9 (A:2-73) Putat 23.7 14 0.00099 21.3 1.2 12 5-16 42-53 (72)
7 d1c52a_ a.3.1.1 (A:) Cytochrom 21.2 25 0.0019 22.1 2.3 17 6-22 74-90 (131)
8 d2fq4a1 a.4.1.9 (A:9-77) Trans 21.0 21 0.0015 20.4 1.7 13 4-16 43-55 (69)
9 d2gfna1 a.4.1.9 (A:4-80) Proba 19.9 23 0.0017 20.4 1.6 13 5-17 46-58 (77)
10 d1ui5a1 a.4.1.9 (A:5-75) A-fac 19.4 22 0.0016 20.3 1.5 12 5-16 45-56 (71)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=73.75 E-value=2.7 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=21.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q psy5 5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTN 49 (128)
Q Consensus 5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~ 49 (128)
.=||+||+..+ |.++|+..-++ |+.||+.+++..
T Consensus 16 ~KP~~~Ef~~i--------a~v~~iG~~i~---G~IGf~I~li~~ 49 (56)
T d1rh5b_ 16 KKPTKDEYLAV--------AKVTALGISLL---GIIGYIIHVPAT 49 (56)
T ss_dssp ECCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34899998653 55666655444 566666666543
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=64.72 E-value=1.1 Score=23.87 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcccc
Q psy5 24 GIILGIVWGFIPLR 37 (128)
Q Consensus 24 ali~Gi~aGiLgLt 37 (128)
.+++||+.|++|.|
T Consensus 4 ~ll~GivlGlipiT 17 (30)
T d1q90g_ 4 PLLCGIVLGLVPVT 17 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHH
Confidence 47899999999987
No 3
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.86 E-value=13 Score=21.19 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=10.6
Q ss_pred ccCChhhHHHHHH
Q psy5 5 IFVPQDEFLDVIY 17 (128)
Q Consensus 5 ~~~dKde~ldvI~ 17 (128)
-+|||||++..+.
T Consensus 40 ~F~sK~~L~~~~~ 52 (70)
T d2gena1 40 HFGNKERIHGELY 52 (70)
T ss_dssp HTCSHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
Confidence 4899999998753
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.79 E-value=32 Score=17.81 Aligned_cols=20 Identities=20% Similarity=0.667 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy5 14 DVIYWARQILGIILGIVWGFI 34 (128)
Q Consensus 14 dvI~w~Rqilali~Gi~aGiL 34 (128)
.+++|+ -++++..|+..|++
T Consensus 4 gavfyi-vfialffgiavgii 23 (32)
T d2e74e1 4 GAVFYI-VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHH-HHHHHHHHHHHHHH
T ss_pred eeeHHH-HHHHHHHHHHhhhe
Confidence 344444 24566666666553
No 5
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=23.92 E-value=16 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=9.8
Q ss_pred ccCChhhHHHHH
Q psy5 5 IFVPQDEFLDVI 16 (128)
Q Consensus 5 ~~~dKde~ldvI 16 (128)
-++||||+++.+
T Consensus 39 ~F~~K~~L~~~~ 50 (62)
T d2vkva1 39 HVKNKRALLDAL 50 (62)
T ss_dssp HSCCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 378999998865
No 6
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=23.75 E-value=14 Score=21.32 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=10.1
Q ss_pred ccCChhhHHHHH
Q psy5 5 IFVPQDEFLDVI 16 (128)
Q Consensus 5 ~~~dKde~ldvI 16 (128)
-|+||||++..+
T Consensus 42 ~F~~K~~L~~~~ 53 (72)
T d2g3ba1 42 HFKDRIGLLEAA 53 (72)
T ss_dssp HHCSHHHHHHHH
T ss_pred HCcCHHHHHHHH
Confidence 479999998876
No 7
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}
Probab=21.22 E-value=25 Score=22.07 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=14.6
Q ss_pred cCChhhHHHHHHHHHHH
Q psy5 6 FVPQDEFLDVIYWARQI 22 (128)
Q Consensus 6 ~~dKde~ldvI~w~Rqi 22 (128)
..+.+|+.+++.|+|+.
T Consensus 74 ~LsD~eI~av~~YIr~~ 90 (131)
T d1c52a_ 74 QLKDEEIAAVLNHIATA 90 (131)
T ss_dssp TSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45789999999999984
No 8
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=20.98 E-value=21 Score=20.37 Aligned_cols=13 Identities=0% Similarity=-0.243 Sum_probs=9.7
Q ss_pred cccCChhhHHHHH
Q psy5 4 MIFVPQDEFLDVI 16 (128)
Q Consensus 4 ~~~~dKde~ldvI 16 (128)
.-|||||+++..+
T Consensus 43 ~~F~~k~~L~~~~ 55 (69)
T d2fq4a1 43 KWWPNKAAVVMDG 55 (69)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 3589999987543
No 9
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=19.87 E-value=23 Score=20.39 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=10.7
Q ss_pred ccCChhhHHHHHH
Q psy5 5 IFVPQDEFLDVIY 17 (128)
Q Consensus 5 ~~~dKde~ldvI~ 17 (128)
-++||||++..+.
T Consensus 46 ~F~~K~~L~~~~~ 58 (77)
T d2gfna1 46 YFGSRHELLLAAL 58 (77)
T ss_dssp HTSSHHHHHHHHH
T ss_pred HCcCHHHHHHHHH
Confidence 4799999998764
No 10
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=19.37 E-value=22 Score=20.29 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=9.9
Q ss_pred ccCChhhHHHHH
Q psy5 5 IFVPQDEFLDVI 16 (128)
Q Consensus 5 ~~~dKde~ldvI 16 (128)
-+|||||++..+
T Consensus 45 ~F~sK~~L~~~~ 56 (71)
T d1ui5a1 45 HFAAKEDLAHAI 56 (71)
T ss_dssp HCSSHHHHHHHH
T ss_pred HCcCHHHHHHHH
Confidence 479999998865
Done!