BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy50
(505 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43824|GTPB6_HUMAN Putative GTP-binding protein 6 OS=Homo sapiens GN=GTPBP6 PE=2 SV=3
Length = 516
Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 177/422 (41%), Positives = 275/422 (65%), Gaps = 14/422 (3%)
Query: 87 QVFVVQPFIKWGKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKG 146
+V +V P +KWG + T ++ +AE+ ALV ++ GW VV + ++S + D+K FGKG
Sbjct: 97 RVCLVHPDVKWGPGKSQMTRAEWQVAEATALVHTLDGWSVVQTMVVSTKTPDRKLIFGKG 156
Query: 147 NLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTRE 206
N E L ++RG VT VF++V+ + +K L+ + V VFDR+ +V+ IF+ +A+T+E
Sbjct: 157 NFEHLTEKIRGSPDVTCVFLNVERMAAPTKKELEAAWGVEVFDRFTVVLHIFRCNARTKE 216
Query: 207 ARLQIAIAELPYLWTR--------YRTIEDATNMNITKGFLDSKRMVLMEREQKLKKALN 258
ARLQ+A+AE+P + YR + M + F+ ++ +L E+E K++KAL+
Sbjct: 217 ARLQVALAEMPLHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALD 276
Query: 259 KLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE 318
+L+ +R ++R ++ R++FP ++VVGYTNCGKTTLIKALT D ++ PR+QLFATLDVT H
Sbjct: 277 RLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHA 336
Query: 319 GMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHV 378
G LP+R+ +LYVDTIGF+S +P L+E F TLED +D+I+HV DVS+P+ QK V
Sbjct: 337 GTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSV 396
Query: 379 DETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMI 438
TL+ L+L +L+ ++ V NKVD V PG TE + +SA RG GL +LK ++ +
Sbjct: 397 LSTLRGLQLPAPLLDSMVEVHNKVDLV-PGYSPTEPNVVPVSALRGHGLQELKAELDAAV 455
Query: 439 LKATGRKNITMRVRSGGSEYQWLMKHTAVS--NIREDDTSAEHLLLDVVMTDVIMNKFKH 496
LKATGR+ +T+RVR G++ WL K V ++ +D +A+ + V++++ KF+
Sbjct: 456 LKATGRQILTLRVRLAGAQLSWLYKEATVQEVDVIPEDGAAD---VRVIISNSAYGKFRK 512
Query: 497 EF 498
F
Sbjct: 513 LF 514
>sp|Q6DCC6|GTPB6_XENLA Putative GTP-binding protein 6 OS=Xenopus laevis GN=gtpbp6 PE=2
SV=1
Length = 527
Score = 329 bits (844), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 175/428 (40%), Positives = 277/428 (64%), Gaps = 21/428 (4%)
Query: 86 HQVFVVQPFIKWGKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGK 145
H+VF+V P +KWG K + +T D +AE+ ALV S+ W VV++ I+S S D K FGK
Sbjct: 106 HRVFIVHPDVKWGAKKDQLSTADLQVAEAAALVHSLPNWSVVNTLIMSTKSPDSKLIFGK 165
Query: 146 GNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTR 205
GN + L ++G ++TAVF++V+ L +K +++ + V VFDRY +V+ IF+ +A T+
Sbjct: 166 GNFQTLTDVIKGHPQITAVFLNVERLSSLTEKEMEEAWGVKVFDRYTVVLNIFRFNAHTK 225
Query: 206 EARLQIAIAELPYLWTRYRTIEDATNMNITKG-----------FLDSKRMVLMEREQKLK 254
EA+LQIA+AELP L R + +M+ G FL+ ++ +L ERE K+K
Sbjct: 226 EAKLQIALAELPLL--RSSLKNETAHMDQQGGGSRYIMGSGETFLEVQQRLLKEREIKIK 283
Query: 255 KALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314
AL K+K +R ++R +++R++FP ++++GYTN GKTTLIKALT D+ L PR+QLFATLDV
Sbjct: 284 YALEKVKKKRNLLRTQRRRREFPIISILGYTNSGKTTLIKALTGDEGLQPRDQLFATLDV 343
Query: 315 TTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQ 374
T+H G+LP + ++YVDTIGF+S +P L+E F TLED + +D++IHV D+S+P+ +Q
Sbjct: 344 TSHAGLLPCHMPVIYVDTIGFLSQLPHNLIESFSATLEDVVHSDLLIHVRDISHPETTKQ 403
Query: 375 KQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKV 434
K V L++L L +++L+ ++ V NK+D + E TE+ L +SA G GL LK++V
Sbjct: 404 KASVLSVLKNLGLPQQLLDTMIEVQNKIDLIDMPEN-TEDSVLSVSALHGHGLEDLKQQV 462
Query: 435 QDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIR---EDDTSAEHLLLDVVMTDVIM 491
+ ++K+TGR +T++V + WL K +V ++ ED T+ + V++T+
Sbjct: 463 ETAVMKSTGRNVVTIKVNLESPQLSWLYKEASVQEVKVLPEDGTAR----VRVIITNSAY 518
Query: 492 NKFKHEFI 499
K++ F
Sbjct: 519 GKYRKLFC 526
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 22 HQVFVIQPFIKWGKKMKRNTTRDFMLAESKALV 54
H+VF++ P +KWG K + +T D +AE+ ALV
Sbjct: 106 HRVFIVHPDVKWGAKKDQLSTADLQVAEAAALV 138
>sp|Q3U6U5|GTPB6_MOUSE Putative GTP-binding protein 6 OS=Mus musculus GN=Gtpbp6 PE=2 SV=1
Length = 514
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/426 (38%), Positives = 252/426 (59%), Gaps = 19/426 (4%)
Query: 86 HQVFVVQPFIKWGKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGK 145
+V V+ P +K K +T ++ +AE+ ALV ++ GW V + ++ + + FGK
Sbjct: 85 QRVCVLHPDVKRPAGKKPRSTAEWQVAEAAALVRALPGWSVASTLVVPSAAPGSRLVFGK 144
Query: 146 GNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTR 205
GN + + +++G +T+VF++V+ + +K L+ + + VFDR+ +V+ IF+ +A+TR
Sbjct: 145 GNFQDVTEKIKGCQDITSVFLNVERMAPPTKKELESAWGLRVFDRFTLVLHIFRCNARTR 204
Query: 206 EARLQIAIAELPYLWTRYRTIEDATNMNITKGFLDSKRMVLMEREQKLKKALNKLKG--- 262
EAR+Q+A+AE+P L ++ + +G+ M E +L+ + +
Sbjct: 205 EARMQLALAEIPLL---RSSVNTDSGQQDQQGWGSRYIMGSGESPTELRARALRDRELRL 261
Query: 263 ---------QREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313
+R +MR ++ R++FP V+VVGYTNCGKTTLI+ALT + +L PR+Q FATLD
Sbjct: 262 RRVLERLRDKRRLMRKERVRREFPVVSVVGYTNCGKTTLIQALTGEAALQPRDQPFATLD 321
Query: 314 VTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQ 373
VT H G+LP+RLRILYVDTIGF+S +P L+ F TLED +D+++HV DVS+PD
Sbjct: 322 VTVHAGLLPSRLRILYVDTIGFLSQLPHNLIHAFSATLEDVAYSDVLVHVTDVSHPDAEL 381
Query: 374 QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEK 433
QK V TL+ L L +LE L V +KVD V PG L +SA G GL +LK
Sbjct: 382 QKATVLSTLRGLHLPPALLESALEVHSKVDLV-PGYTPPCSGALAVSAISGRGLDELKAA 440
Query: 434 VQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIRE-DDTSAEHLLLDVVMTDVIMN 492
++ +L+ATGR+ +T+ VR GG + WL K V ++E + A H + VV+T
Sbjct: 441 LEASVLRATGRQVLTLCVRLGGPQLGWLYKEAVVQQVQELPEGDAAH--VTVVITQAAYG 498
Query: 493 KFKHEF 498
+F+ F
Sbjct: 499 RFRKLF 504
>sp|D9R4W7|HFLX_CLOSW GTPase HflX OS=Clostridium saccharolyticum (strain ATCC 35040 / DSM
2544 / NRCC 2533 / WM1) GN=hflX PE=3 SV=1
Length = 423
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 169/319 (52%), Gaps = 17/319 (5%)
Query: 123 GWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDL 182
G VD I + ++ GKG +E +K ++ + T + V D L Q + L+
Sbjct: 42 GAVAVDKVIQNRERIHPGTYLGKGKIEEIKDRI-WELDATGI-VCDDELSPAQLRNLEGA 99
Query: 183 FQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRY--------RTIEDATNMNI 234
V DR M+++ IF + A TRE ++Q+ +A+L Y R R
Sbjct: 100 LDTKVMDRTMVILDIFASRAVTREGKIQVELAQLRYRSARLVGLRSSLSRLGGGIGTRGP 159
Query: 235 TKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIK 294
+ L+ R ++ +R LK L +K RE++R ++ + P A+VGYTN GK+TL+
Sbjct: 160 GEKKLEMDRRLIHDRIGMLKAELEDVKRHREVVRQQRDKNHVPAAAIVGYTNAGKSTLLN 219
Query: 295 ALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354
LTD ++ ++LFATLD TT LP +IL DT+GFI +P L+E FK TLE+A
Sbjct: 220 RLTDA-GILAEDKLFATLDPTTRNLSLPGGQQILLTDTVGFIRKLPHHLIEAFKSTLEEA 278
Query: 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG---ERV 411
+DII+HVVD SNP Q V ETL+ L + +KI+ + V NK+DA G V
Sbjct: 279 KYSDIILHVVDCSNPQMDMQMYVVYETLRELGICDKIM---ITVFNKIDAADAGVILRDV 335
Query: 412 TEEYDLLISATRGTGLAQL 430
+ ++ + ISA G GL +L
Sbjct: 336 SSDHQVRISAKTGEGLDEL 354
>sp|A0L4B2|HFLX_MAGSM GTPase HflX OS=Magnetococcus sp. (strain MC-1) GN=hflX PE=3 SV=1
Length = 432
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 202/395 (51%), Gaps = 27/395 (6%)
Query: 118 VSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQK 177
+S+ G V + ++SL ++FG G +E L R++ D V V L QQ+
Sbjct: 36 LSTTAGLEVHATQLLSLQKAVPATYFGSGQVEELARRIEEDE--IDVAVVNHALTPIQQR 93
Query: 178 MLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKG 237
L+ V DR ++++IF A A+TRE +Q+ +A L ++ + R + T++ +G
Sbjct: 94 NLEKKLNAKVVDRTGLILEIFAARARTREGIMQVELASL--MYQQSRLVRSWTHLERQRG 151
Query: 238 F-----------LDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTN 286
++ R ++ ER KLKK L +++ R + R +Q TVA+VGYTN
Sbjct: 152 GVGLRGGPGERQIEVDRRLIRERIHKLKKQLEEVERTRALQRQPRQDIPLFTVALVGYTN 211
Query: 287 CGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEP 346
GK+TL LT L ++LFATLD T LP+ RIL DT+GFI +P L+
Sbjct: 212 AGKSTLFNLLTRAGVLA-EDKLFATLDPTMRAVDLPDGGRILLSDTVGFIRQLPHQLVAA 270
Query: 347 FKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406
FK TLE+ M AD+++HVVD+S+P++ + + V+ LQ LE++ L V NK+D +
Sbjct: 271 FKATLEEVMSADMLLHVVDLSDPEWERYVESVNGVLQELEVQHT---RTLTVYNKIDRLE 327
Query: 407 PG---ERVTEEYDLL-ISATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLM 462
ER D + +SA G G+ L +++ + +A R + + V G +WL
Sbjct: 328 SRGILERELARGDTIGVSAQTGEGVEPLLSELRRAVGRAMLRYEVILPVSDG----RWLA 383
Query: 463 KHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHE 497
K A +++ E + L V + ++ + + E
Sbjct: 384 KFHAEASVVEVREGEDFTTLIVELAPAVLGRLQGE 418
>sp|Q04PB3|HFLX_LEPBJ GTPase HflX OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=hflX PE=3 SV=2
Length = 462
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 161/290 (55%), Gaps = 22/290 (7%)
Query: 126 VVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQV 185
VVD+ I D + GKG LE + ++ + + V L Q K + D+ +
Sbjct: 98 VVDTFIQRKNRLDPSTVLGKGKLEEI--ILKAIQKHVELLVFDLELTPSQAKKISDIADI 155
Query: 186 PVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMN----------IT 235
V DR +++ IF +AK+R+ +LQ+ +A+L YL R ++D NM+
Sbjct: 156 KVIDRTQLILDIFARNAKSRDGKLQVELAQLKYLKGRLTELDD--NMSRLTGGIGGRGPG 213
Query: 236 KGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKA 295
+ L+ + + ER +L+ L LK +RE+ R +++R + P V +VGYTN GK+T + A
Sbjct: 214 ETKLEIGKRRVEERITRLEVELKSLKKRREINRRQRKRNELPAVGIVGYTNAGKSTFLNA 273
Query: 296 LTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355
LT+ + ++ N+LFATLD TT P I+ DT+GFI ++P L FK TLE+
Sbjct: 274 LTNSE-ILSENKLFATLDPTTRRIRFPEEREIIISDTVGFIHDLPPELSNAFKATLEELG 332
Query: 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--LVVGNKVD 403
+D+++HVVDVSNPDY Q + V++ L+ LE L H+ + V NK+D
Sbjct: 333 DSDLLVHVVDVSNPDYKLQMEAVEKILEELE-----LSHIPMIQVFNKID 377
>sp|Q9Z873|HFLX_CHLPN GTPase HflX OS=Chlamydia pneumoniae GN=hflX PE=1 SV=1
Length = 472
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 21/281 (7%)
Query: 175 QQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI-------- 226
QQ+ L+ + V DR ++++IF + A T EA +Q+ +A+ YL R + +
Sbjct: 116 QQRNLEKRLGLVVLDRTELILEIFSSRALTAEANIQVQLAQARYLLPRLKRLWGHLSRQK 175
Query: 227 EDATNMNITKGF----LDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVV 282
+ KG ++ R ++ ER KL L + QR R K R+ PT A++
Sbjct: 176 SGGGSGGFVKGEGEKQIELDRRMVRERIHKLSAQLKAVIKQRAERRKVKSRRGIPTFALI 235
Query: 283 GYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT 342
GYTN GK+TL+ LT D+ V ++LFATLD T + +LP +L DT+GFI +P T
Sbjct: 236 GYTNSGKSTLLNLLTAADTYV-EDKLFATLDPKTRKCVLPGGRHVLLTDTVGFIRKLPHT 294
Query: 343 LLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402
L+ FK TLE A D+++HVVD S+P L+ Q + Q L++E+ ++ V NKV
Sbjct: 295 LVAAFKSTLEAAFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKP---RIITVLNKV 351
Query: 403 DAVPPGE-----RVTEEYDLLISATRGTGLAQLKEKVQDMI 438
D +P G R+ +LISA G G+ L + ++I
Sbjct: 352 DRLPQGSIPMKLRLLSPLPVLISAKTGEGIQNLLSLMTEII 392
>sp|D3FTV4|HFLX_BACPE GTPase HflX OS=Bacillus pseudofirmus (strain OF4) GN=hflX PE=3 SV=1
Length = 423
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 12/284 (4%)
Query: 111 LAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDV 170
+AE ++L + +G +VV + + ++ GKG ++ L + +F D
Sbjct: 30 IAELESLAKTAKG-KVVGTITQKREKVESSTYVGKGKVQELVHLIEETEADLVIFN--DE 86
Query: 171 LKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRY------- 223
L+ Q + L + V DR +++ IF + AK+RE +LQ+ +A+L YL R
Sbjct: 87 LQASQMRNLHAECGIAVIDRTQLILDIFASRAKSREGKLQVELAQLKYLLPRLSGQGLAL 146
Query: 224 -RTIEDATNMNITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVV 282
R + L++ R + R ++++ L + R R K+++ +A+V
Sbjct: 147 SRQGGGIGTRGPGETQLETDRRHIRRRMNEIERQLEAVVNHRVRYREKRKKNAAIQLALV 206
Query: 283 GYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT 342
GYTN GK+TL+ LT D+L +QLFATLD TT + LP+ +L DT+GFI ++PTT
Sbjct: 207 GYTNAGKSTLLNRLTKADTL-EEDQLFATLDPTTRQLHLPSGFSVLMSDTVGFIQDLPTT 265
Query: 343 LLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLE 386
L+ F+ TLE+ AD+++HVVD S+PDY Q ++ V + ++ LE
Sbjct: 266 LVASFRSTLEELKEADLLLHVVDCSHPDYEQHERTVIKLIEELE 309
>sp|Q8RAS5|HFLX_THETN GTPase HflX OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=hflX PE=3 SV=1
Length = 428
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 170/318 (53%), Gaps = 21/318 (6%)
Query: 136 SFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVI 195
+K + GKG LE LK V + + V V+ D L Q K L+D V + DR +++
Sbjct: 67 GINKAHYIGKGKLEELKMFVE-NQQADLVIVN-DELTGTQIKNLEDALGVKIVDRTNLIL 124
Query: 196 QIFKAHAKTREARLQIAIAELPYLWTRY--------RTIEDATNMNITKGFLDSKRMVLM 247
IF A+++E LQ+ +A+L Y R R + L+ R +
Sbjct: 125 DIFAKRARSKEGMLQVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETKLEVDRRHIR 184
Query: 248 EREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
R + +++ L +L+ R + R ++++ + P VA+VGYTN GK+TL+ ALT D+ V ++
Sbjct: 185 NRIKAIEEKLEELEKHRNLQRQRRKKNQIPVVAIVGYTNAGKSTLLNALTGADAYV-EDK 243
Query: 308 LFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVS 367
LFATLD T + +LP+ ++ DT+GFI +P L+E FK TLE+ AD+++HV+DV+
Sbjct: 244 LFATLDPTARKLVLPSGREVILTDTVGFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVT 303
Query: 368 NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD---AVPPGERVTEEYDLLISATRG 424
+PD ++ + V++ L L I + V NK+D VP G D+ ISA
Sbjct: 304 SPDMDEKIKVVEKVLSDL---GAIETPRINVYNKIDLLEIVPSGNN----RDIYISAKNK 356
Query: 425 TGLAQLKEKVQDMILKAT 442
GL +L E ++ + K T
Sbjct: 357 IGLDRLLEAIERELFKET 374
>sp|Q3AFV0|HFLX_CARHZ GTPase HflX OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=hflX PE=3 SV=1
Length = 414
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 13/240 (5%)
Query: 175 QQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRY--------RTI 226
Q K L+++ +V V DR I+++IF HA T E ++Q+ +A L Y R R
Sbjct: 81 QAKNLEEILEVTVVDRTQIILEIFAEHAHTHEGKIQVELARLMYNLPRITGLGRVLSRLG 140
Query: 227 EDATNMNITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTN 286
+ L+ R + +R +L++ L +++ R++ R+++ P VA+VGYTN
Sbjct: 141 GGIGTRGPGETKLEVLRRTIRKRIAELRRELKEIEQNRKVKRSRRLEAGVPIVALVGYTN 200
Query: 287 CGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEP 346
GK+TL+ ALT L ++LFATLD T + LP ++L +DT+GFI N+P + E
Sbjct: 201 AGKSTLLNALTGAGVLA-EDKLFATLDPTVRKLTLPGGQKLLLIDTVGFIENMPPLIKEA 259
Query: 347 FKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406
FK TLE A++I+HVVD +NP +Q+ V++ L + K+ V+ V NKVD +P
Sbjct: 260 FKSTLEVVHEAELILHVVDGANPYREEQEAVVEKILTEM----KVRVPVITVYNKVDLLP 315
>sp|C1F407|HFLX_ACIC5 GTPase HflX OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM
11244 / JCM 7670) GN=hflX PE=3 SV=1
Length = 432
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 176/373 (47%), Gaps = 25/373 (6%)
Query: 138 DKKSFFGKGNLELLKRQVRGDARVTA--VFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVI 195
D + G G +E +VR A + V V L Q + L++ V DR +++
Sbjct: 65 DAATLIGSGKVE----EVRAVAESSHADVIVFGQNLTPTQLRNLENALPGRVIDRTQLIL 120
Query: 196 QIFKAHAKTREARLQIAIAELPYLWTRY--------RTIEDATNMNITKGFLDSKRMVLM 247
IF HA+TRE LQ+ +A+L Y+ R R + L++ R +
Sbjct: 121 DIFARHARTREGMLQVELAQLEYMLPRLTGRGREMSRLGGGIGTRGPGETQLETDRRRIQ 180
Query: 248 EREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
R LK L ++ R R +++ PTVA+VGYTN GK+TL ALT L ++
Sbjct: 181 RRISTLKGELESVRRIRSQQRQRREAVPVPTVALVGYTNAGKSTLFNALTGAGVLA-SSR 239
Query: 308 LFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVS 367
+FATLD +LP+R ++L DT+GFI ++P TL+ F+ TLE+ A++++HV D S
Sbjct: 240 MFATLDPKLRAIVLPSRRKVLLSDTVGFIRDLPPTLISSFRATLEEVQKAEVLLHVQDCS 299
Query: 368 NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP----GERVTEEYDLLISATR 423
+ + + V L L +K VL NKVD + P G R + ISA
Sbjct: 300 SATREEHRAEVKHVLAELGAGDKPQIEVL---NKVDLLSPEEQEGLRSGHGRPMAISART 356
Query: 424 GTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLD 483
G GL L E++ D L+A + R+R SE + + A IR + + L
Sbjct: 357 GMGLEDLLERI-DEALQAD--PMVEARLRVPQSEGEVIAAIEAGGVIRNREFEGNLVFLK 413
Query: 484 VVMTDVIMNKFKH 496
V ++ +F+
Sbjct: 414 VSAPASLIGRFRR 426
>sp|Q0WTB4|Y3725_ARATH GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis
thaliana GN=At3g49725 PE=2 SV=2
Length = 620
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 160/302 (52%), Gaps = 42/302 (13%)
Query: 141 SFFGKGNLELLKRQVRGD---ARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQI 197
++FG G ++ +K + + V AVFV+ +L QQ+ L+ ++ PV DR ++I+I
Sbjct: 173 TYFGSGTVDNIKCHLNAEDSKEEVDAVFVNA-ILTAIQQRNLERIWAKPVLDRVGLIIEI 231
Query: 198 FKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGFLDSKRMV------------ 245
F AHA T+EA+LQ +A L Y +R + T+ T G +V
Sbjct: 232 FNAHAHTKEAKLQAELAALMYNKSRLVRVR-GTDGRHTFGQFGEAEVVSARGRAGSKGTG 290
Query: 246 ------LMEREQKLKKA---------LNKLK-GQREMMRNKKQRQK--------FPTVAV 281
E E +L++ L+++K QR + + R+K T+AV
Sbjct: 291 GGFVGGAGETELQLQRRRISDRRIRLLSQIKEAQRTRLLQRAGRKKRVGLEGESSGTIAV 350
Query: 282 VGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT 341
VGYTN GK+TLI ALT +L +LFATLD T LP+ +L DT+GFIS++P
Sbjct: 351 VGYTNAGKSTLISALTKT-ALYCNERLFATLDPTLKSAHLPSGNFVLLSDTVGFISDLPI 409
Query: 342 TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401
L++ F+ TLE+ + AD+++HVVD + P+ + + V L + + E+ L++++ V NK
Sbjct: 410 QLVKAFQSTLEEVVEADLLLHVVDSTAPNIEEHRSTVLHVLNQIGVPEEKLQNMIEVWNK 469
Query: 402 VD 403
+D
Sbjct: 470 ID 471
>sp|B2UPE7|HFLX_AKKM8 GTPase HflX OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=hflX PE=3 SV=1
Length = 437
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 162/317 (51%), Gaps = 23/317 (7%)
Query: 110 MLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVD 169
ML E + LVS++ G + +I K G G + +K Q+ D R V +
Sbjct: 32 MLDELEDLVSNL-GIGIAGKHLIKSRDMHAKFLCGTGKAQEVK-QLALDCRADCVVFD-N 88
Query: 170 VLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDA 229
+L QQ+ + L V DR +++ IF A+TREA LQ+ +A + Y R + +
Sbjct: 89 MLSPSQQREWERLVDECVIDREEVILDIFARRARTREATLQVELARMQYSLPRMARMWNH 148
Query: 230 TNMNITKGF----------------LDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQR 273
+ ++ R + R + +++ L + QR R +++R
Sbjct: 149 LDRQGGGSGGGKGGGGAARGEGEKQIEVDRRLARARIEAIQRELVLVTRQRATQRKERER 208
Query: 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTI 333
Q T A+VGYTN GK++L+ ++ + ++ R+ LFATLD TT + LP+ +L DT+
Sbjct: 209 QAVATAAIVGYTNAGKSSLLSLVSGSE-VMARDMLFATLDTTTRKIELPHGQPLLLTDTV 267
Query: 334 GFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE 393
GFI N+P L+E FK TLE+A+LAD +I VVD S+P+ ++ + E L L +K +
Sbjct: 268 GFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDASDPEAVRHYETTLEVLNELGAGDKPM- 326
Query: 394 HVLVVGNKVDAVPPGER 410
+VV NKVD VP R
Sbjct: 327 --IVVLNKVDLVPEERR 341
>sp|E0RQS7|HFLX_SPITD GTPase HflX OS=Spirochaeta thermophila (strain ATCC 49972 / DSM
6192 / RI 19.B1) GN=hflX PE=3 SV=1
Length = 408
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 177/348 (50%), Gaps = 28/348 (8%)
Query: 98 GKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIIS--LLSFDKKSFFGKGNLELLKRQV 155
G+K R T L E LV + G+ + TI+S L + ++K FG G E++ R+
Sbjct: 15 GRKTGREETSS--LPELSLLVEEL-GY--IPETILSFPLRTPERKFLFGPGQAEVVAREA 69
Query: 156 RGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAE 215
R R + V + L QQ+ + L + V DR ++I+IF HA+T++A+LQ A
Sbjct: 70 R--MRGIELVVFDEDLTPAQQRNWEHLVKSRVMDRTEVIIEIFSRHARTKQAQLQTEKAR 127
Query: 216 LPYLWTRYRTI-----EDATNMNITKGF----LDSKRMVLMEREQKLKKALNKLKGQREM 266
L YL R R T+G ++ R +++ R ++++ + ++ +
Sbjct: 128 LEYLLPRLRGAWSHLDRQRGGARGTRGEGERQIELDRRMILSRLARIRREMEAIERHQTT 187
Query: 267 MRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLR 326
R+++ P V++VGYTN GK++L LT + +++ F TLD TT ++P R
Sbjct: 188 TRSRRLEAGIPRVSLVGYTNAGKSSLFTRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGR 246
Query: 327 ILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLE 386
++ DT+GFI ++P TL++ F TLE+ A +++ VVD+S+P+ L +E L
Sbjct: 247 VVVSDTVGFIQHLPHTLVDAFHATLEEVRDAHLLLEVVDLSSPNLLLHLSTTEEVLT--- 303
Query: 387 LEEKILEHV--LVVGNKVDAVPPGERV--TEEYDLLISATRGTGLAQL 430
E H+ + V NK D P + ++ ++L+SA G G+ L
Sbjct: 304 --EIGAHHIPRIRVYNKADRSSPHPLLPPSDHPEILVSAKTGEGIEGL 349
>sp|A2BLW4|HFLX_HYPBU GTPase HflX OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
GN=hflX PE=3 SV=1
Length = 375
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 174/358 (48%), Gaps = 35/358 (9%)
Query: 109 FMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRG-DARVTAVFVS 167
++LAE+ G+RVVD +S K LE L + + A +
Sbjct: 27 YVLAET-------AGYRVVDVLYYRRVSSSK--LLSDAKLEELAEKAKSLVGNEYARIIV 77
Query: 168 VDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIE 227
D LK + + V DR M++++IF HA +REA+LQI +A L + R
Sbjct: 78 YDNLKPREYFRIVKATGVNTIDRTMLILEIFSLHAGSREAKLQIELARLRHELPLVREAI 137
Query: 228 DATNMNITKGFL-------DSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVA 280
+ + GFL D+ ++ R K+K+ L +L+ + E+ R+K++ P +A
Sbjct: 138 RLSKLKELPGFLGPGGYAIDAYYRYMVSRIAKIKRELRELRRRHEIERSKRRSAGLPHIA 197
Query: 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340
+VGY + GKT+L A+T P + T + N LR +++DT+GFI IP
Sbjct: 198 IVGYASAGKTSLFNAITGLQK--PVGPEYFTTITPKRRAISFNGLRTVFIDTVGFIMRIP 255
Query: 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGN 400
++E F TLE+A AD+I++VVDVS PD + ++ +DE LQ L I + +++ N
Sbjct: 256 PEIIEAFHSTLEEAATADVILYVVDVSEPDTVIAEK-LDEGLQTLRRIGVIDKPLIIAAN 314
Query: 401 KVDAVPPG--ERVTE-------------EYDLLISATRGTGLAQLKEKVQDMILKATG 443
K+D VP ER+T E + +SA G G+A+L ++ ++ G
Sbjct: 315 KIDLVPQEDIERLTRLLEGAASTLYPALEAVIPVSAKTGAGVAKLLCRIATLLAGTKG 372
>sp|P94478|HFLX_BACSU GTPase HflX OS=Bacillus subtilis (strain 168) GN=hflX PE=3 SV=2
Length = 420
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 15/307 (4%)
Query: 138 DKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQI 197
D ++ GKG +E LK V + + + D L Q K L +V + DR +++ I
Sbjct: 56 DAATYIGKGKVEELKALV--EELEADLLIFNDELSPSQLKSLATAIEVKMIDRTQLILDI 113
Query: 198 FKAHAKTREARLQIAIAELPYLWTRY--------RTIEDATNMNITKGFLDSKRMVLMER 249
F A+TRE +LQI +A+L Y R R + L++ R + R
Sbjct: 114 FAKRARTREGKLQIELAQLQYALPRLTGQGINLSRQGGGIGARGPGETKLETDRRHIRNR 173
Query: 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309
++ L+ + R R ++++ +A+VGYTN GK+T LT DS + LF
Sbjct: 174 IHEINTQLSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTSADS-YEEDLLF 232
Query: 310 ATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNP 369
ATLD T + +LP+ +L DT+GFI ++PTTL+ F+ TLE+ AD+I+H++D SN
Sbjct: 233 ATLDPMTRKMVLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHLIDSSNE 292
Query: 370 DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYD-LLISATRGTGLA 428
DY ++ V L+ LE ++ + L NK D P T D +++SA A
Sbjct: 293 DYAGHEKTVLRLLEELEADDIPM---LTAYNKRDQKLPDFIPTAGRDHIMVSAKFEDDAA 349
Query: 429 QLKEKVQ 435
KE +Q
Sbjct: 350 AFKEAIQ 356
>sp|Q73J26|HFLX_TREDE GTPase HflX OS=Treponema denticola (strain ATCC 35405 / CIP 103919
/ DSM 14222) GN=hflX PE=3 SV=1
Length = 391
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 161/322 (50%), Gaps = 31/322 (9%)
Query: 141 SFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKA 200
+ G G LE + + + + VF S ++ Q+ L+ V DR ++IQIF
Sbjct: 75 TLVGSGQLEKIAQAIEEEGADLVVFNSAVSPRI--QRNLEAALNTCVIDRSEVIIQIFAD 132
Query: 201 HAKTREARLQIAIAELPYLWTRY--RTIEDATNMNITKGFLDSKRMVLMER----EQKLK 254
A+TREA LQ +A L Y R R A KG + R ++ ++LK
Sbjct: 133 RAQTREAVLQAELARLEYSMPRLTRRWTSLAQQRGGAKGTRGASRGAGEKKLELDRRRLK 192
Query: 255 KALNKLKGQREMMRNKKQRQKFPTV-------AVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
+ KLK + E +R ++ Q+ + A+VGYTN GK++L+K L+ + + ++
Sbjct: 193 TEITKLKKEVERVRLQRSEQRKTRLNGDKKIGAIVGYTNAGKSSLLKKLSGAE-VFTEDK 251
Query: 308 LFATLDVTTHEGML---PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVV 364
LFATLD T + L ++IL DT+GF+SN+P L++ F+ TLE+A LAD +I V
Sbjct: 252 LFATLDAETRKVFLQTGEKNIQILLTDTVGFVSNLPHQLIDAFRSTLEEAALADFLIIVC 311
Query: 365 DVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV-------PPGERVTEEYDL 417
D ++P + + + L L +K ++ NK+D + ER E +
Sbjct: 312 DAAHPAMPECLEVTKKVLDELSCSDK---PSIIAINKMDDIFDEAQLLNLKERYPEAVE- 367
Query: 418 LISATRGTGLAQLKEKVQDMIL 439
IS T G GL LK+K+ D+I+
Sbjct: 368 -ISVTTGQGLEGLKKKITDIII 388
>sp|A6H294|HFLX_FLAPJ GTPase HflX OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511) GN=hflX PE=3 SV=1
Length = 413
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 144/275 (52%), Gaps = 17/275 (6%)
Query: 138 DKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQI 197
+ K+F G G +E + V + T VF D L QQK + + + DR +++ I
Sbjct: 57 NPKTFLGTGKIEEINLYVLENGISTIVFD--DELTPSQQKNISKIIDCKILDRTHLILDI 114
Query: 198 FKAHAKTREARLQIAIAELPYL-------WTRYRTIEDATNM-NITKGFLDSKRMVLMER 249
F A+T AR Q+ +A+ YL WT + M + +++ R ++ +R
Sbjct: 115 FAQRAETSYARTQVELAQCIYLLPRLSGMWTHLERQKGGIGMRGPGETEIETDRRIVRDR 174
Query: 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309
LK+ + + Q+ R R VA+VGYTN GK+TL+ A+ D V N+LF
Sbjct: 175 IALLKEKIKIIDKQQATQRG--NRGAMVRVALVGYTNVGKSTLMNAVGKSDVFV-ENKLF 231
Query: 310 ATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNP 369
ATLD T + ++ N L L DT+GFI +PT L++ FK TL++ AD+++HVVD+S+
Sbjct: 232 ATLDTTVRKVVIKN-LPFLLSDTVGFIRKLPTQLVDSFKSTLDEVREADLLLHVVDISHQ 290
Query: 370 DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404
D+ V++ L ++ +K ++V NK+DA
Sbjct: 291 DFEDHIDAVNKILLDIKSADK---PTIMVFNKIDA 322
>sp|Q5JGB4|HFLX_PYRKO GTPase HflX OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=hflX PE=3 SV=1
Length = 442
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 146/275 (53%), Gaps = 22/275 (8%)
Query: 143 FGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHA 202
G G LE LK V+ +F + L Q L ++ + DR+ +V++IF+ A
Sbjct: 47 IGPGKLEELKELVKELKPDKVIFA--NRLTPSQAYNLWKELRIEIMDRWQLVLEIFEKRA 104
Query: 203 KTREARLQIAIA----ELPYLWTRYRTIEDATNMNI-------TKGFLDSKRMVLMEREQ 251
++EA+LQ+ +A E+P + R I T+ +L R R
Sbjct: 105 HSKEAKLQVELASLQYEIPLVKEAIRRIRLGDRAGFKGMGEYQTQQYLKHIRY----RMG 160
Query: 252 KLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT 311
K++ L ++K RE+ R K++ F VA+ GYTN GK+TL+ AL D++ + +NQ+F T
Sbjct: 161 KIRDELERVKADREVKRKKRENAGFVLVALAGYTNAGKSTLLNALADEN-VEAKNQMFTT 219
Query: 312 LDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDY 371
LD TT L + RIL DT+GFI +P ++E F TLE+ + ADI++ V+D S P +
Sbjct: 220 LDTTTRRFRLGTK-RILATDTVGFIDGLPPFIVEAFHSTLEEIVKADIVLLVLDSSEP-W 277
Query: 372 LQQKQHVDETLQHLELEEKILEHVLVVG-NKVDAV 405
+ ++ +LQ L E K LE ++V NK+D +
Sbjct: 278 GEIRRKFLASLQVLR-ELKALEKPIIVALNKIDLI 311
>sp|Q0I442|HFLX_HAES1 GTPase HflX OS=Haemophilus somnus (strain 129Pt) GN=hflX PE=3 SV=1
Length = 458
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 146/277 (52%), Gaps = 20/277 (7%)
Query: 140 KSFFGKGNLELLKRQVRGDARVTAVFVSVD-VLKLHQQKMLQDLFQVPVFDRYMIVIQIF 198
K F G+G E + + V ++ A V V+ L Q + L+ + Q V DR +++ IF
Sbjct: 80 KYFVGQGKAEEIAQAVE---QLNADIVLVNHSLTPAQARNLESICQCRVVDRTGLILDIF 136
Query: 199 KAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGF----------LDSKRMVLME 248
A++ E +LQ+ +A+L +L TR + T ++ KG L++ R ++
Sbjct: 137 AQRARSHEGKLQVELAQLRHLATRL--VRRKTGLDQQKGAVGLRGPGETQLETDRRLIKV 194
Query: 249 REQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL 308
R +L+ L K+ QR R +++ PT+++VGYTN GK+TL LT + V +QL
Sbjct: 195 RITQLQNRLEKVAKQRNQNRQTRRKADIPTISLVGYTNAGKSTLFNVLTQANVYVA-DQL 253
Query: 309 FATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSN 368
FATLD T + + + DT+GFI +P L+ FK TL++ A +++HV+DV++
Sbjct: 254 FATLDPTLKRLPIQDVGNCVLADTVGFIRELPHDLVSAFKSTLQETTEASLLLHVIDVAD 313
Query: 369 PDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405
L+ V+E L ++ + L+V NK+D V
Sbjct: 314 SRKLENMLTVNEVLSEIKANQVT---TLLVYNKIDQV 347
>sp|A9H253|HFLX_GLUDA GTPase HflX OS=Gluconacetobacter diazotrophicus (strain ATCC 49037
/ DSM 5601 / PAl5) GN=hflX PE=3 SV=2
Length = 450
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 141/280 (50%), Gaps = 28/280 (10%)
Query: 165 FVSVD-VLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRY 223
FV VD L Q + L+ V DR ++++IF HA TREARLQ+ +A L Y+ R
Sbjct: 115 FVIVDHELSPSQIRNLERATGAQVLDRTGVIVEIFHRHANTREARLQVEMARLKYVAPRL 174
Query: 224 RTIEDATNMNITKGFLDSK----RMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTV 279
R G +S R + +R +LK L+ + QR+ + + R+ V
Sbjct: 175 RESSGGGGRQQGPGAGESTLALDRRKIRDRLAELKTQLDAV--QRDGDQRRSARRDQLRV 232
Query: 280 AVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNI 339
A+VGYTN GK++L++ALT LV ++LFATLD T R RIL DT+GFI +
Sbjct: 233 ALVGYTNAGKSSLMRALTGSQVLV-EDKLFATLDTTVRILQPETRPRILVSDTVGFIKQL 291
Query: 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVG 399
P L+ F+ TL +A+ A +++ VVD S+P Y Q LE+ +L +
Sbjct: 292 PHDLVASFRSTLAEALEASLLLFVVDASDPTYESQ----------LEVTRGVLREI---- 337
Query: 400 NKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMIL 439
DAV P V + D L A R A L++K D I+
Sbjct: 338 -GADAV-PSRLVLNKMDRLDPAAR----AALRDKHPDAIM 371
>sp|P25519|HFLX_ECOLI GTPase HflX OS=Escherichia coli (strain K12) GN=hflX PE=1 SV=3
Length = 426
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 168/336 (50%), Gaps = 25/336 (7%)
Query: 111 LAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDV 170
L E ++LVSS G + S + K F G+G + V+ +F
Sbjct: 27 LQEFESLVSSA-GVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHA-- 83
Query: 171 LKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDAT 230
L Q++ L+ L + V DR +++ IF A+T E +LQ+ +A+L +L TR + T
Sbjct: 84 LSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRL--VRGWT 141
Query: 231 NMNITKGF----------LDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVA 280
++ KG L++ R +L R +++ L +++ QRE R + + PTV+
Sbjct: 142 HLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVS 201
Query: 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340
+VGYTN GK+TL +T+ + +QLFATLD T + + + DT+GFI ++P
Sbjct: 202 LVGYTNAGKSTLFNRITEA-RVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP 260
Query: 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGN 400
L+ FK TL++ A +++HV+D ++ + + V+ L+ ++ E L+V N
Sbjct: 261 HDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEI---PTLLVMN 317
Query: 401 KVDAV----PPGERVTEEYD--LLISATRGTGLAQL 430
K+D + P +R E + +SA G G+ QL
Sbjct: 318 KIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQL 353
>sp|Q58526|HFLX_METJA GTPase HflX OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=hflX PE=3
SV=1
Length = 402
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 31/324 (9%)
Query: 130 TIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFD 189
TI+ + D K G G +E + ++ + + V V ++L Q+ L F+V V D
Sbjct: 31 TIVQIRKADPKYQIGSGLVERIAENIK-EENIEIVIVG-NILTPSQKYNLAKKFKVEVID 88
Query: 190 RYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGFLDSKRMVLMER 249
+ +V++IF HA+T+EA+LQ+ +AEL Y R R M GF + +
Sbjct: 89 KIELVLRIFYKHARTKEAQLQVRLAELQYELPRAREKVRLAKMGEQPGFGGYGDYEVEKY 148
Query: 250 EQKLKKALNKLKGQREMMRN-----KKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVP 304
QK+K+ + +K + E +R +K R KF TV ++GYTN GKT+L+ ALT ++
Sbjct: 149 YQKVKREIATIKRKLEKLREHRRVARKGRAKFDTVGLIGYTNAGKTSLLNALTGENK-ES 207
Query: 305 RNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVV 364
+NQ+F TL TT + + +IL DT+GFI ++P ++E F T+E++ +D+I+ VV
Sbjct: 208 KNQVFTTLTTTTR-AIKGIKRKILVTDTVGFIDDLPPFMIEAFLSTIEESADSDLILIVV 266
Query: 365 DVSNPDYLQQKQHVDETLQHLELEEKILEH------VLVVGNKVDAVPPGE--RVTEEYD 416
D S+ ++E + L++ +IL ++ V NKVD + + ++ EE D
Sbjct: 267 DASD--------DIEEIKRKLKVNHEILSKINCKAPIITVFNKVDKITKEKKRKILEELD 318
Query: 417 ------LLISATRGTGLAQLKEKV 434
+ +SA + LKE +
Sbjct: 319 RYIVNPIFVSAKYDINMDLLKEMI 342
>sp|A1RY30|HFLX_THEPD GTPase HflX OS=Thermofilum pendens (strain Hrk 5) GN=hflX PE=3 SV=1
Length = 424
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 157/323 (48%), Gaps = 34/323 (10%)
Query: 138 DKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQI 197
D K G+G + LKR V + VF+ + LK +Q L V V DRY ++++I
Sbjct: 50 DPKYNIGRGKVLELKRLVEEKKPLKVVFL--NDLKPNQAYNLSKETGVEVIDRYELILEI 107
Query: 198 FKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGFL-------DSKRMVLMERE 250
F A +RE++LQI +A+L + + + GFL D+ + R
Sbjct: 108 FAKRAGSRESKLQIELAKLKRELSFAKEYINLAKRGELHGFLGGGKYAVDAYYAYVSMRI 167
Query: 251 QKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA 310
K+++ L K++ +E ++ TVA+ GYT GKTTL LT ++ + + FA
Sbjct: 168 SKIEEELRKIRKMKEERIARRVEAGLYTVALTGYTGAGKTTLFNVLTGENGYID-GKPFA 226
Query: 311 TLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSN-P 369
TL + + +L DTIGFI ++P L++ F TL + + AD+I+ V+DVS+ P
Sbjct: 227 TLSTLSRRTYF-HGFPVLVTDTIGFIDDLPDALVDAFYTTLRETLAADVILLVLDVSDTP 285
Query: 370 DYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVP-------------PGERVTEEY 415
+++K E L +L + +L+VGNK+D V G R T
Sbjct: 286 AEIRRKLTASMEVLLNLGVPPT---RILLVGNKIDKVSSAELEERERLLEDSGLRYT--- 339
Query: 416 DLLISATRGTGLAQLKEKVQDMI 438
LISA R G+ +L + V +M+
Sbjct: 340 --LISAARRIGIHELTQAVVEML 360
>sp|Q980M3|HFLX_SULSO GTPase HflX OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM
1617 / JCM 11322 / P2) GN=hflX PE=1 SV=1
Length = 356
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 155/308 (50%), Gaps = 28/308 (9%)
Query: 153 RQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIA 212
+Q++ D ++ + + + H + ++L V D+ +++++IF HA ++EA++QI
Sbjct: 49 QQIKNDEEISTLIIFEQLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIE 108
Query: 213 IAELPY-------LWTRYRTIEDATNMNITKGFLDSKRMVLMEREQKLKKALNKLKGQRE 265
+A L Y +T+ + E + ++S R KL K L +K +E
Sbjct: 109 LARLKYELPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKE 168
Query: 266 MMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRL 325
+R P++ +VGYTN GKT+L +LT V +LF T+ + + NR
Sbjct: 169 KSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV-DTKLFTTMSPKRYAIPINNR- 226
Query: 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL--QQKQHVDETLQ 383
+I+ VDT+GFI IP +++ F VTL +A +D +I V+D + + L + Q E L+
Sbjct: 227 KIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILR 286
Query: 384 HLELEEKILEHVLVVGNKVDAVPPG--------ERVTEE-----YDLL-ISATRGTGLAQ 429
+ + K +LV NK+D + E++++E +D++ ISA + T L
Sbjct: 287 EIGVSGK---PILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLEL 343
Query: 430 LKEKVQDM 437
L++K+ +
Sbjct: 344 LRDKIYQL 351
>sp|A9A623|HFLX_NITMS GTPase HflX OS=Nitrosopumilus maritimus (strain SCM1) GN=hflX PE=3
SV=1
Length = 371
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 171/350 (48%), Gaps = 33/350 (9%)
Query: 110 MLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGK--GNLELLKRQVRGDARVTAVFVS 167
++ E+K L + G++VV + L K G LE + ++R D V V
Sbjct: 14 VINEAKGLCDA-AGFQVVHTIKQKFLKRPKYGISGGILERLEEISEKIRPD-----VIVF 67
Query: 168 VDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIE 227
+VLK Q L + DR ++++IF++ A + E++LQ+ +A+L Y R +
Sbjct: 68 DEVLKPSQNYNLAAALHREILDREALILEIFESRASSAESKLQVKLAQLRYEMARAKEKV 127
Query: 228 DATNMNITKGFLDSKRMV-------LMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVA 280
++M GF+ + + R ++ L K QRE+ R ++R F T++
Sbjct: 128 RLSSMGEQPGFMGIGKFEVDVYYNDIKHRMNTVRSKLEKAGKQRELHRQGRKRMGFKTIS 187
Query: 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340
+ GYT+ GKTTL +T + + ++LF TL TT + N+ L DT+GFIS +P
Sbjct: 188 LAGYTSAGKTTLFNMMTGE-TRDQSSELFTTLSTTTRRVSI-NQEPFLISDTVGFISKLP 245
Query: 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVD--ETLQHLELEEKILEHVLVV 398
+++ FK TLE+ DIII V+D+ + + +K+ TL L +E+ + + L
Sbjct: 246 AYMIDAFKSTLEELGHTDIIIVVIDIGDSIFELKKKFSSCMRTLSELGVEKDRMVYAL-- 303
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMI 438
NK D + E + E+ + L +SA G + QLKE + D++
Sbjct: 304 -NKSDLLEHSE-IEEKIETLNLVDNKKWIPVSAKTGKNVKQLKELIGDIL 351
>sp|Q3ANQ3|MNME_CHLCH tRNA modification GTPase MnmE OS=Chlorobium chlorochromatii (strain
CaD3) GN=mnmE PE=3 SV=1
Length = 473
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 241 SKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKF----PTVAVVGYTNCGKTTLIKAL 296
S+ V + ++L++ + +L+G+ + + Q + +VG N GK+TL+ AL
Sbjct: 189 SEEDVEFQNREELREDVQRLQGEINRLLDSYQHGRLLKEGVATVLVGSPNAGKSTLLNAL 248
Query: 297 TDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356
++ + +Q T D +L + L L +DT G E + +
Sbjct: 249 LGEERSIVSHQPGTTRDYIEEPLLLGSTLFRL-IDTAGLREGEEEVEHEGIRRSYRKIAE 307
Query: 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP-PGERVTEEY 415
AD++++++DVS+PDY + + L+ ++ L+V NK DA+ P ER+ +
Sbjct: 308 ADVVLYLLDVSHPDYCNELSDITSLLEQASPNVQL----LLVANKCDAITNPTERLAQLQ 363
Query: 416 DLL-------ISATRGTGLAQLKEKVQDMI 438
+ I+A G GL LK+++ +M+
Sbjct: 364 AAMPQATVCGIAAKEGDGLEALKQQMSNMV 393
>sp|B1L9N6|MNME_THESQ tRNA modification GTPase MnmE OS=Thermotoga sp. (strain RQ2)
GN=mnmE PE=3 SV=1
Length = 450
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 40/175 (22%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY--VDTIGFI 336
+ +VG N GK+TL+ L ++D + + T DV + E ++ IL+ VDT G
Sbjct: 214 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVR 270
Query: 337 SNIPTTLLEPFKV--TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394
S L+E + TL++ ADI++ V+D S+P +DE + KILE
Sbjct: 271 SET-NDLVERLGIERTLQEIEKADIVLFVLDASSP--------LDEE------DRKILER 315
Query: 395 V-----LVVGNKVDAVPPGERVTEE----------YDLLISATRGTGLAQLKEKV 434
+ LVV NKVD V E++ EE + + ISA +G GL +L+E +
Sbjct: 316 IKNKRYLVVINKVDVV---EKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 367
>sp|Q9WYA4|MNME_THEMA tRNA modification GTPase MnmE OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=mnmE PE=1 SV=1
Length = 450
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 40/175 (22%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY--VDTIGFI 336
+ +VG N GK+TL+ L ++D + + T DV + E ++ IL+ VDT G
Sbjct: 214 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVR 270
Query: 337 SNIPTTLLEPFKV--TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394
S L+E + TL++ ADI++ V+D S+P +DE + KILE
Sbjct: 271 SET-NDLVERLGIERTLQEIEKADIVLFVLDASSP--------LDEE------DRKILER 315
Query: 395 V-----LVVGNKVDAVPPGERVTEE----------YDLLISATRGTGLAQLKEKV 434
+ LVV NKVD V E++ EE + + ISA +G GL +L+E +
Sbjct: 316 IKNKRYLVVINKVDVV---EKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 367
>sp|Q5ZR82|MNME_LEGPH tRNA modification GTPase MnmE OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=mnmE PE=3 SV=1
Length = 446
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 251 QKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA 310
Q L+K + +L+ R ++ ++ + G N GK+TLI L D +
Sbjct: 190 QLLQKIIGRLEDIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVAIVTEIAGT 249
Query: 311 TLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD 370
T D+ E +L + + + +DT G + E K ++ AD ++ VVD++NPD
Sbjct: 250 TRDIM-REHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLVVDINNPD 308
Query: 371 YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQL 430
QQ ++E L L KI ++ V NK+D + +E+ + +SA G GL +L
Sbjct: 309 --QQNSLLNEL--RLTLPNKI--PIITVYNKIDTTKLTAKC-DEHTVYLSAKTGEGLDEL 361
Query: 431 KEKVQDMI 438
K+ ++ ++
Sbjct: 362 KKVIKQVV 369
>sp|A5IKF4|MNME_THEP1 tRNA modification GTPase MnmE OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=mnmE PE=3 SV=1
Length = 450
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 40/175 (22%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY--VDTIGFI 336
+ +VG N GK+TL+ L ++D + + T DV + E ++ IL+ VDT G
Sbjct: 214 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVR 270
Query: 337 SNIPTTLLEPFKV--TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394
S L+E + TL++ ADI++ V+D S+P +DE + KILE
Sbjct: 271 SE-TNDLVERLGIERTLQEIEKADIVLFVLDASSP--------LDEE------DRKILER 315
Query: 395 V-----LVVGNKVDAVPPGERVTEE----------YDLLISATRGTGLAQLKEKV 434
+ LVV NKVD V E++ EE + + ISA +G GL +L+E +
Sbjct: 316 IKNKRYLVVINKVDVV---EKINEEEIKNKLGTDRHMVKISALKGEGLEKLEEAI 367
>sp|A5IIK3|MNME_LEGPC tRNA modification GTPase MnmE OS=Legionella pneumophila (strain
Corby) GN=mnmE PE=3 SV=1
Length = 446
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 257 LNKLKGQREMMRNKKQR----QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312
L ++ G+ E +R++ + ++ ++ + G N GK+TLI L D + T
Sbjct: 192 LQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTR 251
Query: 313 DVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL 372
D+ E +L + + + +DT G + E K ++ AD ++ VVD++NPD
Sbjct: 252 DIM-REHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLVVDINNPD-- 308
Query: 373 QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKE 432
QQ ++E L L KI ++ V NK+D + +E+ + +SA G GL +LK+
Sbjct: 309 QQNSLLNEL--RLTLPNKI--PIITVYNKIDTTKLTAKC-DEHTVYLSAKTGEGLDELKK 363
Query: 433 KVQDMI 438
++ ++
Sbjct: 364 VIKQVV 369
>sp|Q5WSF0|MNME_LEGPL tRNA modification GTPase MnmE OS=Legionella pneumophila (strain
Lens) GN=mnmE PE=3 SV=1
Length = 446
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 257 LNKLKGQREMMRNKKQR----QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312
L ++ G+ E +R++ + ++ ++ + G N GK+TLI L D + T
Sbjct: 192 LQRIIGRLEEIRSQANQGVLLREGLSLVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTR 251
Query: 313 DVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL 372
D+ E +L + + + +DT G + E K ++ AD ++ VVD++NPD
Sbjct: 252 DIM-REHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVLLVVDINNPD-- 308
Query: 373 QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKE 432
Q+ + L+ L L +KI ++ V NK+D + +E+ + +SA G GL +LK+
Sbjct: 309 -QQNSLHNELK-LTLPDKI--PIITVYNKIDTTKLTAKC-DEHTVYLSAKTGEGLDELKK 363
Query: 433 KVQDMI 438
++ ++
Sbjct: 364 VIKQVV 369
>sp|Q0APC5|ERA_MARMM GTPase Era OS=Maricaulis maris (strain MCS10) GN=era PE=3 SV=1
Length = 314
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 267 MRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL----FATLDVTTHEGMLP 322
M + +R F AV+G N GK+TL+ AL + + +++ FA V L
Sbjct: 1 MSDTPKRCGF--AAVIGSPNAGKSTLVNALVGEKVTIVTHKVQTTRFAVRGVA-----LA 53
Query: 323 NRLRILYVDTIGFISNIPTTLLEPFKVTL--EDAMLADIIIHVVDVSNPDYLQQKQHVDE 380
+I+ VDT G + P T L+ V A AD I+HVVD ++
Sbjct: 54 GETQIVLVDTPGVFA--PKTRLDKSMVAAAWSGAGEADTIMHVVDAGARARMEHGGAKSG 111
Query: 381 TLQHLELEEKILEHV-------LVVGNKVDAVPPGERVTEEYDL----------LISATR 423
+ +E ++++ E + ++V NKVD +P + + +L +ISA
Sbjct: 112 DSRMVEDDDRVTEGLKKTEQKAILVLNKVDLMPRDQLLAMSQELYETGVYSEVFMISAKT 171
Query: 424 GTGLAQLKEKVQDMI 438
G+G+ QL+E + ++
Sbjct: 172 GSGVPQLREFIAGLM 186
>sp|A1TM31|DER_ACIAC GTPase Der OS=Acidovorax citrulli (strain AAC00-1) GN=der PE=3 SV=1
Length = 447
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDD-DSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIG 334
P +A+VG N GK+TL LT D++V FA L H G + + +DT G
Sbjct: 3 PVIALVGRPNVGKSTLFNRLTKSRDAIVAD---FAGLTRDRHYGNGKLGKHEYIVIDTGG 59
Query: 335 FISNIPTTLL-EPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE 393
F + + + E K T + AD++I VVD + Q + L+ L +
Sbjct: 60 FEPDASSGIYREMAKQTQQAVAEADVVIFVVD-ARAGLSAQDHDIANYLRRLG------K 112
Query: 394 HVLVVGNKVDAVPPGERVTEEYD------LLISATRGTGLAQLKEKVQDMI 438
L+VGNK + + G ++ E Y+ L +SA G G+ + E D +
Sbjct: 113 PCLLVGNKAEGMREGVQLAEFYELGLGEVLPVSAAHGQGVRSMLESALDTL 163
>sp|Q58803|Y1408_METJA Uncharacterized protein MJ1408 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1408 PE=3 SV=2
Length = 350
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 264 REMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN 323
RE +++ + PTV + GY N GK+TL+K LT D + + F T + G +
Sbjct: 158 REKLKDLPTFKDLPTVVIAGYPNVGKSTLLKKLTGADVEI-NSYPFTTKGINV--GYIGE 214
Query: 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAM----LADIIIHVVDVSN-PDYLQQKQHV 378
I VDT G + L E + L+ + LA++I+ ++D S Y +
Sbjct: 215 ---IQMVDTPGLLDR---PLYERNDIELQAILALNYLANLILFIIDASEFCGY-----TI 263
Query: 379 DETLQHL-ELEEKILEHVLVVGNKVDAVPPGERVTE----------EYDLLISATRGTGL 427
+E + L E+++ ++V NK+D V ERV E E L ISA + GL
Sbjct: 264 EEQINLLKEIKDLFKAPIVVAINKIDLV-DEERVKEIEEKLKEVGIEEILKISADKDIGL 322
Query: 428 AQLKEKVQDMILK 440
+LKE+++ + +K
Sbjct: 323 DELKERLKKIAIK 335
>sp|A7HJZ8|OBG_FERNB GTPase obg OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=obg PE=3 SV=1
Length = 439
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLV---PRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335
V ++GY N GK+++I +++ + P L L V + G + D G
Sbjct: 165 VGLIGYPNVGKSSIISKISNARPKIANYPFTTLVPNLGVVSINGTPETSFVV--ADIPGL 222
Query: 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKIL--E 393
I + V L+ +I+HV+DVS + Q + + LE K L +
Sbjct: 223 IKG-ASEGKGLGNVFLKHVERCSVIVHVIDVSGSEGRDPIQDYFDIRKELEFFSKDLAKK 281
Query: 394 HVLVVGNKVDAVPPGE---------RVTEEYDLLISATRGTGLAQLKEKVQDMI 438
L+VGNK D + P E + E LLISA G G+ +LK + D+I
Sbjct: 282 RELIVGNKSDLLTPEEINAVKDRFLKEIGEGILLISAVTGQGINELKYAMWDII 335
>sp|Q2GGZ1|ERA_EHRCR GTPase Era OS=Ehrlichia chaffeensis (strain Arkansas) GN=era PE=3
SV=1
Length = 296
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 26/165 (15%)
Query: 280 AVVGYTNCGKTTLIKALTDDD--SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
A+VG TN GK+TLI L ++ P+ Q T V H + ++++++DT G S
Sbjct: 12 AIVGTTNAGKSTLINMLVGQKVAAVTPKVQ---TTRVRMHAVLNNENVQLIFIDTPGIFS 68
Query: 338 NIPTTLLEPFKVTLEDAMLADI--IIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395
P T LE F V L I +I ++DV N YL +H+++ + +++ + +
Sbjct: 69 --PKTKLEKFIVKHAWMSLKGIENVILLLDVKN--YLN--KHIEKIIS--RIKQSNINAI 120
Query: 396 LVVGNKVDAVPPG---ERVTEEYDL-------LISATRGTGLAQL 430
LVV NK+D VP + + Y L ISA GL++L
Sbjct: 121 LVV-NKIDTVPTSSVDKAIEHMYSLHSFSKTFTISALHDIGLSRL 164
>sp|C4XIQ6|DER_DESMR GTPase Der OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM
13731 / RS-1) GN=der PE=3 SV=1
Length = 444
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT---LDVTTHEGMLPNRLRILYVDTIGF 335
+AV+G N GK++LI AL + L+ + T +DV H+ R L+VDT G
Sbjct: 182 LAVLGRPNAGKSSLINALVGESRLIVSDIAGTTRDAVDVVVHQ----KGKRYLFVDTAGV 237
Query: 336 ISNIPTT-LLEPFKV--TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKIL 392
T LE + V L A AD+ + V+D + +Q K+ + L+ E K
Sbjct: 238 RKRTRITDGLERYSVAKALSSAKRADVAVVVIDATGGVGVQDKR----LISFLDSERKAF 293
Query: 393 EHVLVVGNKVDAVPPGERVTEEYD-------------LLISATRGTGLAQLKEKVQDM-- 437
LV NK D VP + + + D L +SA +G G+A++ + + +
Sbjct: 294 ---LVAVNKTDLVPQKDMLALQKDIARELRMCSHVPVLYMSAAKGKGVAKVLPQAEAIWA 350
Query: 438 ---ILKATGRKNITMR 450
I TG N MR
Sbjct: 351 ECQIRIGTGELNRAMR 366
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 277 PTVAVVGYTNCGKTTLI-------KALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY 329
P VA+VG N GK+TL +A+T D V R++L A ++ EG +
Sbjct: 3 PIVAIVGRPNVGKSTLFNRLTRGRRAITHDLPGVTRDRLEAPAEI---EGRF-----VTL 54
Query: 330 VDTIGFISNIPTTLLEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELE 388
VDT G +L E A++ AD+++ +VD + + E L+ L
Sbjct: 55 VDTGGMDYEAEESLARQIVEQAEAALVTADVVLFLVD-GKAGRTALEDDLAERLRRLG-- 111
Query: 389 EKILEHVLVVGNKVDAVPPGERVTEEYD------LLISATRGTGLAQLKEKVQDMILKA 441
+ V+V NKVD + +T ++ L ISA G G+A+L E + + + +A
Sbjct: 112 ----KPVIVAVNKVDGLERVAAMTADFHAWGLPLLAISAAHGQGMAELAEAIAERLPEA 166
>sp|Q8RB50|ERA_THETN GTPase Era OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=era PE=3 SV=1
Length = 298
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 32/173 (18%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR-LRILYVDTIGF-- 335
VA++G TN GK+TL+ A+ + + + T + T G+L +I++VDT G
Sbjct: 8 VALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRN--TIRGILTTEDYQIIFVDTPGIHK 65
Query: 336 -ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL--QQKQHVDETLQHLELEEKIL 392
S + ++E K TL+D D+I+++V+ PD +++ + L+ ++
Sbjct: 66 PKSKLSEFMIEVAKRTLKD---VDLILYMVE---PDTSIGPGDRYILDNLKEVDTP---- 115
Query: 393 EHVLVVGNKVDAVPPGERVTE-------EYD----LLISATRGTGLAQLKEKV 434
V++V NK+D V P ERV E EY+ + ISA+ GT + LKEK+
Sbjct: 116 --VILVVNKIDLV-PAERVEEAIKVFKSEYNFKDVVAISASLGTNVEVLKEKI 165
>sp|B1JSA4|DER_YERPY GTPase Der OS=Yersinia pseudotuberculosis serotype O:3 (strain
YPIII) GN=der PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|A4TMT3|DER_YERPP GTPase Der OS=Yersinia pestis (strain Pestoides F) GN=der PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|Q1CK87|DER_YERPN GTPase Der OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=der
PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|A9R7Z8|DER_YERPG GTPase Der OS=Yersinia pestis bv. Antiqua (strain Angola) GN=der
PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|Q8ZCT9|DER_YERPE GTPase Der OS=Yersinia pestis GN=der PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|Q1C5J2|DER_YERPA GTPase Der OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=der
PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|A7FFZ3|DER_YERP3 GTPase Der OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
31758) GN=der PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|A1JKS6|DER_YERE8 GTPase Der OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=der PE=3 SV=1
Length = 494
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
+DT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VIDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|Q668A3|DER_YERPS GTPase Der OS=Yersinia pseudotuberculosis serotype I (strain
IP32953) GN=der PE=3 SV=1
Length = 495
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
>sp|B2K9P6|DER_YERPB GTPase Der OS=Yersinia pseudotuberculosis serotype IB (strain
PB1/+) GN=der PE=3 SV=1
Length = 495
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVP------RNQLFATLDVTTHEGMLPNRLRIL 328
P +A+VG N GK+TL LT D+LV R++ + +V HE +
Sbjct: 2 IPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHE--------FI 53
Query: 329 YVDTIGFIS---NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
VDT G + T + + +E+ ADI++ +VD + + Q + QHL
Sbjct: 54 VVDTGGIDGTEDGVETKMAGQSLLAIEE---ADIVLFMVD-ARAGLMPADQGI---AQHL 106
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
EK +V NK D + P + Y L I+A+ G G+ QL E V
Sbjct: 107 RSREKA---TFLVANKTDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDV 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,058,688
Number of Sequences: 539616
Number of extensions: 6934792
Number of successful extensions: 30013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1015
Number of HSP's that attempted gapping in prelim test: 29189
Number of HSP's gapped (non-prelim): 1573
length of query: 505
length of database: 191,569,459
effective HSP length: 122
effective length of query: 383
effective length of database: 125,736,307
effective search space: 48157005581
effective search space used: 48157005581
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)