Query psy50
Match_columns 505
No_of_seqs 512 out of 3879
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:13:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy50.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/50hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2262 HflX GTPases [General 100.0 2E-86 4.3E-91 674.7 38.2 395 84-498 2-410 (411)
2 PRK11058 GTPase HflX; Provisio 100.0 7.9E-75 1.7E-79 612.8 40.7 398 85-500 8-420 (426)
3 TIGR03156 GTP_HflX GTP-binding 100.0 3.3E-71 7.2E-76 572.8 34.4 338 87-437 1-350 (351)
4 KOG0410|consensus 100.0 4E-69 8.6E-74 528.9 28.1 394 106-503 3-405 (410)
5 COG1159 Era GTPase [General fu 100.0 4.3E-30 9.4E-35 253.6 7.0 195 275-501 5-211 (298)
6 PF13167 GTP-bdg_N: GTP-bindin 100.0 2.5E-29 5.5E-34 210.8 10.2 92 105-199 4-95 (95)
7 PRK05291 trmE tRNA modificatio 100.0 2.3E-27 5E-32 253.6 22.3 243 164-440 114-371 (449)
8 cd01878 HflX HflX subfamily. 100.0 2.3E-27 5E-32 227.1 19.6 198 236-437 1-203 (204)
9 TIGR00436 era GTP-binding prot 99.9 7.9E-28 1.7E-32 241.2 8.5 192 277-501 1-203 (270)
10 COG0486 ThdF Predicted GTPase 99.9 6.7E-26 1.5E-30 235.6 21.6 245 164-441 116-378 (454)
11 PRK15494 era GTPase Era; Provi 99.9 1.1E-25 2.3E-30 232.7 10.3 195 275-501 51-255 (339)
12 PRK00089 era GTPase Era; Revie 99.9 1.2E-24 2.7E-29 220.1 7.7 195 275-501 4-210 (292)
13 PRK12298 obgE GTPase CgtA; Rev 99.9 2.8E-23 6E-28 218.0 11.7 188 276-491 159-362 (390)
14 KOG1423|consensus 99.9 3.5E-23 7.6E-28 203.6 5.3 197 275-501 71-310 (379)
15 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.3E-21 1.4E-25 203.4 21.6 238 165-440 107-361 (442)
16 PRK12299 obgE GTPase CgtA; Rev 99.9 1.8E-21 3.9E-26 200.5 16.1 162 275-440 157-329 (335)
17 PF02421 FeoB_N: Ferrous iron 99.9 9.9E-22 2.2E-26 180.7 9.6 145 277-434 1-156 (156)
18 COG1160 Predicted GTPases [Gen 99.9 2.7E-21 5.9E-26 200.8 12.5 154 277-438 4-164 (444)
19 PRK12297 obgE GTPase CgtA; Rev 99.8 1.2E-20 2.5E-25 199.5 15.1 162 276-441 158-329 (424)
20 COG1163 DRG Predicted GTPase [ 99.8 1.8E-20 3.8E-25 186.4 14.5 196 240-438 25-288 (365)
21 cd01898 Obg Obg subfamily. Th 99.8 3E-20 6.4E-25 171.4 14.7 157 278-437 2-169 (170)
22 TIGR02729 Obg_CgtA Obg family 99.8 3.2E-20 6.9E-25 191.0 15.0 161 275-438 156-328 (329)
23 KOG1489|consensus 99.8 4.1E-20 8.8E-25 183.1 12.5 160 274-437 194-365 (366)
24 PRK12296 obgE GTPase CgtA; Rev 99.8 6.5E-20 1.4E-24 196.3 14.4 163 275-441 158-342 (500)
25 cd01897 NOG NOG1 is a nucleola 99.8 6E-19 1.3E-23 162.5 15.1 155 277-438 1-167 (168)
26 COG1084 Predicted GTPase [Gene 99.8 9.5E-19 2.1E-23 174.8 15.5 187 248-439 139-336 (346)
27 COG1160 Predicted GTPases [Gen 99.8 5.8E-19 1.3E-23 183.6 14.2 159 275-441 177-353 (444)
28 cd04109 Rab28 Rab28 subfamily. 99.8 1.1E-18 2.4E-23 169.0 14.6 154 278-440 2-167 (215)
29 KOG1191|consensus 99.8 2.3E-18 5E-23 179.1 16.8 166 272-440 264-451 (531)
30 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.9E-18 6.2E-23 155.0 14.6 153 276-438 1-156 (157)
31 COG0536 Obg Predicted GTPase [ 99.8 9.6E-19 2.1E-23 175.4 12.4 162 275-441 158-335 (369)
32 cd01881 Obg_like The Obg-like 99.8 1.9E-18 4.1E-23 159.9 12.0 153 281-437 1-175 (176)
33 cd04142 RRP22 RRP22 subfamily. 99.8 5.4E-18 1.2E-22 162.5 15.2 161 278-440 2-175 (198)
34 cd01896 DRG The developmentall 99.8 3.3E-18 7.2E-23 168.1 12.5 156 278-438 2-225 (233)
35 cd01861 Rab6 Rab6 subfamily. 99.8 1.2E-17 2.6E-22 152.6 15.1 148 278-437 2-160 (161)
36 cd01865 Rab3 Rab3 subfamily. 99.8 1.6E-17 3.5E-22 153.4 15.7 151 277-439 2-163 (165)
37 PRK03003 GTP-binding protein D 99.8 7.7E-18 1.7E-22 181.7 15.6 158 274-440 36-200 (472)
38 PRK03003 GTP-binding protein D 99.8 9.5E-18 2.1E-22 181.0 15.7 159 275-441 210-384 (472)
39 cd01868 Rab11_like Rab11-like. 99.8 2E-17 4.3E-22 152.1 15.4 150 277-438 4-164 (165)
40 cd04136 Rap_like Rap-like subf 99.8 1.2E-17 2.7E-22 152.6 13.9 150 277-438 2-162 (163)
41 PRK09866 hypothetical protein; 99.8 1.3E-17 2.9E-22 179.8 16.3 180 238-437 43-351 (741)
42 cd01894 EngA1 EngA1 subfamily. 99.8 3.7E-18 8E-23 154.5 10.3 149 280-437 1-156 (157)
43 cd01864 Rab19 Rab19 subfamily. 99.7 2E-17 4.3E-22 152.4 15.0 148 277-437 4-164 (165)
44 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.6E-17 5.6E-22 151.7 15.6 151 277-439 3-164 (166)
45 cd01867 Rab8_Rab10_Rab13_like 99.7 2.6E-17 5.6E-22 152.3 15.5 152 276-439 3-165 (167)
46 cd04140 ARHI_like ARHI subfami 99.7 2.2E-17 4.8E-22 152.4 14.9 151 277-437 2-163 (165)
47 cd04171 SelB SelB subfamily. 99.7 1.4E-17 3E-22 152.0 13.3 144 278-436 2-163 (164)
48 cd01866 Rab2 Rab2 subfamily. 99.7 3.4E-17 7.4E-22 151.8 15.9 151 276-439 4-166 (168)
49 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.4E-17 7.4E-22 150.2 15.7 149 278-438 2-163 (164)
50 cd04144 Ras2 Ras2 subfamily. 99.7 2.4E-17 5.1E-22 156.4 14.8 154 278-441 1-165 (190)
51 cd04122 Rab14 Rab14 subfamily. 99.7 3.9E-17 8.5E-22 150.8 15.8 149 277-439 3-164 (166)
52 smart00173 RAS Ras subfamily o 99.7 3.2E-17 7E-22 150.4 14.8 150 278-439 2-162 (164)
53 cd04119 RJL RJL (RabJ-Like) su 99.7 3.9E-17 8.4E-22 149.5 15.3 151 278-438 2-166 (168)
54 cd04112 Rab26 Rab26 subfamily. 99.7 3.6E-17 7.7E-22 155.3 15.5 151 278-441 2-165 (191)
55 TIGR03594 GTPase_EngA ribosome 99.7 1.6E-17 3.6E-22 176.8 13.9 154 278-440 1-161 (429)
56 cd04145 M_R_Ras_like M-Ras/R-R 99.7 4.9E-17 1.1E-21 148.8 15.2 150 277-438 3-163 (164)
57 cd04138 H_N_K_Ras_like H-Ras/N 99.7 4.3E-17 9.3E-22 148.3 14.6 150 277-438 2-161 (162)
58 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 7.1E-17 1.5E-21 148.3 16.0 146 277-438 1-165 (168)
59 cd04120 Rab12 Rab12 subfamily. 99.7 5.6E-17 1.2E-21 156.0 15.9 149 278-440 2-164 (202)
60 smart00175 RAB Rab subfamily o 99.7 7.2E-17 1.6E-21 147.5 15.8 149 278-439 2-162 (164)
61 cd04175 Rap1 Rap1 subgroup. T 99.7 5.6E-17 1.2E-21 149.1 14.7 150 277-438 2-162 (164)
62 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 9.1E-17 2E-21 153.7 16.5 155 278-441 2-170 (201)
63 TIGR03594 GTPase_EngA ribosome 99.7 4.1E-17 8.8E-22 173.8 15.5 158 275-440 171-345 (429)
64 cd01879 FeoB Ferrous iron tran 99.7 3E-17 6.5E-22 149.1 12.5 145 281-438 1-156 (158)
65 cd04127 Rab27A Rab27a subfamil 99.7 7.8E-17 1.7E-21 150.4 15.5 152 277-440 5-178 (180)
66 PRK00093 GTP-binding protein D 99.7 5.8E-17 1.3E-21 173.1 15.8 158 275-440 172-345 (435)
67 cd04176 Rap2 Rap2 subgroup. T 99.7 6.9E-17 1.5E-21 148.2 14.1 150 277-438 2-162 (163)
68 cd04113 Rab4 Rab4 subfamily. 99.7 1.1E-16 2.4E-21 146.6 14.9 147 278-437 2-160 (161)
69 PRK00093 GTP-binding protein D 99.7 4.1E-17 9E-22 174.2 13.9 153 277-438 2-161 (435)
70 cd04157 Arl6 Arl6 subfamily. 99.7 6.3E-17 1.4E-21 147.8 13.0 146 278-436 1-161 (162)
71 cd04124 RabL2 RabL2 subfamily. 99.7 1.1E-16 2.4E-21 147.4 14.2 150 278-440 2-159 (161)
72 cd04114 Rab30 Rab30 subfamily. 99.7 1.8E-16 4E-21 146.1 15.6 150 276-438 7-168 (169)
73 cd04160 Arfrp1 Arfrp1 subfamil 99.7 5.8E-17 1.3E-21 149.1 12.1 147 278-436 1-166 (167)
74 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-16 3.1E-21 145.9 14.7 154 276-437 2-173 (174)
75 cd04139 RalA_RalB RalA/RalB su 99.7 1.6E-16 3.6E-21 144.9 14.8 150 278-439 2-162 (164)
76 cd01863 Rab18 Rab18 subfamily. 99.7 1.8E-16 3.9E-21 145.0 14.8 149 278-437 2-160 (161)
77 cd04146 RERG_RasL11_like RERG/ 99.7 9.4E-17 2E-21 147.9 12.9 151 278-438 1-163 (165)
78 cd01860 Rab5_related Rab5-rela 99.7 2.5E-16 5.5E-21 144.1 15.6 148 277-438 2-162 (163)
79 PRK09518 bifunctional cytidyla 99.7 8.4E-17 1.8E-21 181.6 15.1 157 275-440 274-437 (712)
80 cd01862 Rab7 Rab7 subfamily. 99.7 3.1E-16 6.7E-21 144.6 16.2 154 278-440 2-168 (172)
81 cd00877 Ran Ran (Ras-related n 99.7 1.4E-16 2.9E-21 147.9 13.9 148 278-440 2-160 (166)
82 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.9E-16 4.2E-21 149.3 15.1 152 276-440 3-171 (183)
83 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 3E-16 6.4E-21 146.4 16.1 150 278-440 2-166 (170)
84 cd04156 ARLTS1 ARLTS1 subfamil 99.7 9.2E-17 2E-21 146.8 12.3 143 278-436 1-159 (160)
85 cd04151 Arl1 Arl1 subfamily. 99.7 9.4E-17 2E-21 147.0 12.3 142 278-436 1-157 (158)
86 cd04106 Rab23_lke Rab23-like s 99.7 2.4E-16 5.3E-21 144.0 15.0 146 278-437 2-161 (162)
87 cd04110 Rab35 Rab35 subfamily. 99.7 2.9E-16 6.4E-21 150.1 16.1 153 275-441 5-169 (199)
88 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 3.1E-16 6.8E-21 146.5 15.5 152 277-440 3-165 (172)
89 cd04154 Arl2 Arl2 subfamily. 99.7 1.7E-16 3.6E-21 147.8 13.6 148 273-436 11-172 (173)
90 cd04123 Rab21 Rab21 subfamily. 99.7 3.7E-16 8.1E-21 142.1 15.6 149 278-438 2-161 (162)
91 PRK09518 bifunctional cytidyla 99.7 1.4E-16 3E-21 179.9 15.5 158 275-440 449-622 (712)
92 cd04149 Arf6 Arf6 subfamily. 99.7 1.7E-16 3.8E-21 147.7 13.3 145 275-436 8-167 (168)
93 cd04163 Era Era subfamily. Er 99.7 1.3E-16 2.7E-21 144.7 12.0 153 276-437 3-167 (168)
94 PRK04213 GTP-binding protein; 99.7 1.9E-16 4.2E-21 151.0 13.6 153 275-440 8-193 (201)
95 cd04117 Rab15 Rab15 subfamily. 99.7 4.5E-16 9.7E-21 143.5 15.3 148 278-437 2-160 (161)
96 cd04111 Rab39 Rab39 subfamily. 99.7 5.2E-16 1.1E-20 150.1 16.5 155 277-442 3-169 (211)
97 cd04125 RabA_like RabA-like su 99.7 5.4E-16 1.2E-20 146.5 16.2 152 277-441 1-164 (188)
98 PTZ00369 Ras-like protein; Pro 99.7 2.9E-16 6.4E-21 148.7 14.4 154 276-441 5-169 (189)
99 PRK09602 translation-associate 99.7 6.3E-17 1.4E-21 170.3 10.6 189 277-494 2-300 (396)
100 KOG0084|consensus 99.7 2.7E-16 5.8E-21 146.7 13.4 154 275-441 8-174 (205)
101 PLN03110 Rab GTPase; Provision 99.7 5.2E-16 1.1E-20 150.6 16.0 153 276-441 12-176 (216)
102 cd01893 Miro1 Miro1 subfamily. 99.7 3.9E-16 8.5E-21 144.4 14.4 147 278-438 2-163 (166)
103 cd00154 Rab Rab family. Rab G 99.7 5.3E-16 1.1E-20 139.6 14.6 145 278-435 2-158 (159)
104 cd04121 Rab40 Rab40 subfamily. 99.7 6.7E-16 1.5E-20 147.0 16.0 153 276-443 6-171 (189)
105 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4E-16 8.7E-21 145.7 13.9 144 276-436 15-173 (174)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.4E-16 7.3E-21 144.2 12.8 142 278-436 2-158 (159)
107 cd04118 Rab24 Rab24 subfamily. 99.7 1E-15 2.2E-20 144.9 16.3 150 278-440 2-167 (193)
108 PRK00454 engB GTP-binding prot 99.7 4.7E-16 1E-20 147.1 13.9 155 274-439 22-194 (196)
109 TIGR02528 EutP ethanolamine ut 99.7 2E-16 4.3E-21 142.1 10.7 130 278-435 2-141 (142)
110 cd01899 Ygr210 Ygr210 subfamil 99.7 2.8E-16 6E-21 160.9 12.8 159 279-440 1-270 (318)
111 PLN03118 Rab family protein; P 99.7 1.1E-15 2.5E-20 147.3 16.0 153 276-440 14-178 (211)
112 cd04128 Spg1 Spg1p. Spg1p (se 99.7 9.4E-16 2E-20 144.9 15.1 149 278-440 2-167 (182)
113 smart00177 ARF ARF-like small 99.7 7.5E-16 1.6E-20 144.3 14.2 147 275-438 12-173 (175)
114 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.2E-15 2.5E-20 141.7 15.4 150 277-438 3-168 (170)
115 cd04116 Rab9 Rab9 subfamily. 99.7 1.1E-15 2.4E-20 141.3 14.8 154 275-437 4-169 (170)
116 cd00880 Era_like Era (E. coli 99.7 7.6E-16 1.6E-20 137.7 13.1 149 281-437 1-162 (163)
117 cd04126 Rab20 Rab20 subfamily. 99.7 1.5E-15 3.2E-20 148.0 16.1 147 278-440 2-191 (220)
118 PRK15467 ethanolamine utilizat 99.7 4.3E-16 9.4E-21 143.9 11.5 137 278-440 3-148 (158)
119 cd04177 RSR1 RSR1 subgroup. R 99.7 1.2E-15 2.7E-20 141.2 14.6 150 277-438 2-163 (168)
120 cd01889 SelB_euk SelB subfamil 99.7 8.1E-16 1.7E-20 146.1 13.5 147 278-439 2-186 (192)
121 cd04158 ARD1 ARD1 subfamily. 99.7 8.9E-16 1.9E-20 142.6 13.3 147 278-440 1-162 (169)
122 COG0218 Predicted GTPase [Gene 99.7 9.5E-16 2.1E-20 144.6 13.4 155 274-439 22-197 (200)
123 cd00881 GTP_translation_factor 99.7 1.4E-15 3.1E-20 141.9 14.6 146 278-439 1-187 (189)
124 cd04132 Rho4_like Rho4-like su 99.7 1.6E-15 3.4E-20 142.8 14.9 150 278-441 2-169 (187)
125 cd04147 Ras_dva Ras-dva subfam 99.7 1.3E-15 2.9E-20 145.4 14.6 150 278-439 1-163 (198)
126 TIGR03598 GTPase_YsxC ribosome 99.7 3.3E-16 7.1E-21 147.1 10.2 145 273-428 15-179 (179)
127 cd01892 Miro2 Miro2 subfamily. 99.7 1.3E-15 2.7E-20 141.9 13.8 151 275-439 3-166 (169)
128 cd04143 Rhes_like Rhes_like su 99.7 1.3E-15 2.8E-20 151.0 14.6 151 278-438 2-170 (247)
129 PTZ00133 ADP-ribosylation fact 99.7 1.4E-15 3.1E-20 143.5 14.2 148 276-440 17-179 (182)
130 cd04155 Arl3 Arl3 subfamily. 99.7 1.9E-15 4.1E-20 140.0 14.7 146 274-436 12-172 (173)
131 cd00876 Ras Ras family. The R 99.7 1.6E-15 3.4E-20 137.7 13.7 148 278-437 1-159 (160)
132 smart00178 SAR Sar1p-like memb 99.7 1.3E-15 2.8E-20 143.9 13.6 147 275-437 16-183 (184)
133 KOG0078|consensus 99.7 2.8E-15 6.1E-20 141.6 15.5 155 275-442 11-177 (207)
134 PLN00223 ADP-ribosylation fact 99.6 1.7E-15 3.7E-20 142.9 14.1 148 275-439 16-178 (181)
135 PLN03108 Rab family protein; P 99.6 2.9E-15 6.3E-20 144.7 15.9 154 276-441 6-170 (210)
136 cd01890 LepA LepA subfamily. 99.6 1.9E-15 4.2E-20 140.7 14.2 146 278-438 2-176 (179)
137 cd04137 RheB Rheb (Ras Homolog 99.6 2.7E-15 5.9E-20 140.1 15.3 152 277-441 2-165 (180)
138 cd04159 Arl10_like Arl10-like 99.6 1.7E-15 3.6E-20 136.5 13.2 142 279-436 2-158 (159)
139 cd04148 RGK RGK subfamily. Th 99.6 2.5E-15 5.3E-20 146.5 15.1 149 278-439 2-163 (221)
140 PLN03071 GTP-binding nuclear p 99.6 1.5E-15 3.3E-20 147.7 13.4 151 275-440 12-173 (219)
141 cd00878 Arf_Arl Arf (ADP-ribos 99.6 3.3E-15 7.1E-20 136.3 14.7 143 278-436 1-157 (158)
142 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.1E-15 4.5E-20 141.4 13.7 147 277-437 2-173 (175)
143 cd00879 Sar1 Sar1 subfamily. 99.6 3.1E-15 6.7E-20 141.1 14.8 146 275-437 18-189 (190)
144 KOG0092|consensus 99.6 1.1E-15 2.3E-20 142.2 11.3 151 276-441 5-169 (200)
145 COG0370 FeoB Fe2+ transport sy 99.6 1.1E-15 2.3E-20 165.8 13.0 152 277-441 4-166 (653)
146 PRK09554 feoB ferrous iron tra 99.6 1.4E-15 3.1E-20 171.7 14.5 152 277-439 4-168 (772)
147 smart00174 RHO Rho (Ras homolo 99.6 2.1E-15 4.5E-20 139.9 12.9 146 279-438 1-171 (174)
148 cd01871 Rac1_like Rac1-like su 99.6 2.6E-15 5.6E-20 140.6 13.3 147 277-437 2-173 (174)
149 cd04133 Rop_like Rop subfamily 99.6 2.7E-15 5.9E-20 141.2 13.5 148 277-438 2-172 (176)
150 cd04134 Rho3 Rho3 subfamily. 99.6 2.7E-15 5.8E-20 142.3 13.2 149 278-440 2-175 (189)
151 KOG1486|consensus 99.6 2.3E-15 5E-20 144.9 12.6 207 194-438 7-287 (364)
152 cd01888 eIF2_gamma eIF2-gamma 99.6 2.8E-15 6E-20 144.1 13.3 149 278-439 2-199 (203)
153 cd04135 Tc10 TC10 subfamily. 99.6 3.5E-15 7.5E-20 138.4 13.0 147 278-438 2-173 (174)
154 cd01870 RhoA_like RhoA-like su 99.6 4.1E-15 8.8E-20 138.0 13.1 148 277-438 2-174 (175)
155 cd04103 Centaurin_gamma Centau 99.6 5.1E-15 1.1E-19 136.6 13.4 142 278-437 2-157 (158)
156 PF01926 MMR_HSR1: 50S ribosom 99.6 1.1E-15 2.4E-20 133.2 8.5 115 278-401 1-116 (116)
157 cd04161 Arl2l1_Arl13_like Arl2 99.6 4.2E-15 9.1E-20 138.0 12.9 143 278-436 1-166 (167)
158 cd01875 RhoG RhoG subfamily. 99.6 7.6E-15 1.7E-19 139.5 14.6 149 277-439 4-177 (191)
159 cd00157 Rho Rho (Ras homology) 99.6 4.7E-15 1E-19 136.6 12.7 145 278-436 2-170 (171)
160 cd04131 Rnd Rnd subfamily. Th 99.6 6.9E-15 1.5E-19 138.5 14.0 148 277-438 2-175 (178)
161 PF00009 GTP_EFTU: Elongation 99.6 1.9E-15 4.1E-20 143.2 9.9 149 276-439 3-187 (188)
162 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.1E-14 2.3E-19 137.9 14.5 148 276-438 5-179 (182)
163 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1.6E-14 3.5E-19 141.9 16.2 151 276-440 13-189 (232)
164 smart00176 RAN Ran (Ras-relate 99.6 1.3E-14 2.8E-19 139.5 14.8 143 282-440 1-155 (200)
165 TIGR00437 feoB ferrous iron tr 99.6 4.9E-15 1.1E-19 163.6 13.0 145 283-438 1-154 (591)
166 cd04130 Wrch_1 Wrch-1 subfamil 99.6 8.6E-15 1.9E-19 136.3 12.7 144 278-435 2-170 (173)
167 KOG0094|consensus 99.6 1.1E-14 2.3E-19 135.6 12.8 153 277-441 23-187 (221)
168 cd01876 YihA_EngB The YihA (En 99.6 5.5E-15 1.2E-19 134.4 10.8 148 279-437 2-169 (170)
169 PTZ00258 GTP-binding protein; 99.6 1.5E-14 3.3E-19 151.2 15.2 91 274-367 19-126 (390)
170 cd04166 CysN_ATPS CysN_ATPS su 99.6 5.4E-15 1.2E-19 142.7 11.0 137 278-429 1-184 (208)
171 KOG0098|consensus 99.6 1.4E-14 3.1E-19 133.9 12.7 153 276-441 6-170 (216)
172 TIGR00231 small_GTP small GTP- 99.6 3.5E-14 7.6E-19 126.8 14.3 146 277-435 2-160 (161)
173 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 2.4E-14 5.2E-19 132.7 13.5 142 279-436 2-163 (164)
174 KOG0394|consensus 99.6 1.4E-14 3.1E-19 133.6 10.8 156 272-440 5-179 (210)
175 KOG0087|consensus 99.6 2.3E-14 5E-19 135.1 12.4 154 275-441 13-178 (222)
176 cd01891 TypA_BipA TypA (tyrosi 99.6 4.8E-14 1E-18 134.1 14.9 137 277-430 3-173 (194)
177 TIGR00475 selB selenocysteine- 99.6 3.1E-14 6.6E-19 157.1 15.2 146 278-440 2-167 (581)
178 PF00071 Ras: Ras family; Int 99.6 4.6E-14 9.9E-19 129.2 13.5 148 278-438 1-160 (162)
179 TIGR00487 IF-2 translation ini 99.6 3.2E-14 6.9E-19 156.6 14.4 147 274-436 85-247 (587)
180 TIGR00491 aIF-2 translation in 99.6 1E-13 2.2E-18 152.4 18.3 147 275-438 3-215 (590)
181 CHL00189 infB translation init 99.6 3.7E-14 8.1E-19 158.5 14.9 148 274-438 242-409 (742)
182 cd01873 RhoBTB RhoBTB subfamil 99.5 5.5E-14 1.2E-18 134.5 13.6 147 277-437 3-194 (195)
183 PRK10512 selenocysteinyl-tRNA- 99.5 4.2E-14 9E-19 156.7 14.3 148 278-440 2-167 (614)
184 cd04129 Rho2 Rho2 subfamily. 99.5 7.1E-14 1.5E-18 132.2 13.6 149 278-440 3-174 (187)
185 cd01884 EF_Tu EF-Tu subfamily. 99.5 5.3E-14 1.2E-18 134.7 11.9 136 277-427 3-171 (195)
186 PF10662 PduV-EutP: Ethanolami 99.5 3.9E-14 8.5E-19 128.0 9.9 131 277-435 2-142 (143)
187 PF00025 Arf: ADP-ribosylation 99.5 1.2E-13 2.6E-18 129.7 13.7 149 274-438 12-175 (175)
188 PRK05306 infB translation init 99.5 8.6E-14 1.9E-18 156.9 14.3 147 274-437 288-450 (787)
189 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.4E-13 3.1E-18 134.3 14.0 149 277-439 2-176 (222)
190 KOG1490|consensus 99.5 4.9E-14 1.1E-18 147.0 11.1 183 251-439 142-341 (620)
191 KOG0080|consensus 99.5 9.6E-14 2.1E-18 125.4 11.1 151 276-440 11-175 (209)
192 cd00882 Ras_like_GTPase Ras-li 99.5 9.2E-14 2E-18 122.3 10.5 143 281-435 1-156 (157)
193 cd04104 p47_IIGP_like p47 (47- 99.5 3.4E-13 7.4E-18 129.0 12.7 153 277-441 2-186 (197)
194 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.5E-13 3.2E-18 131.2 9.9 158 278-440 2-185 (196)
195 PRK12317 elongation factor 1-a 99.5 2E-13 4.4E-18 145.6 11.7 142 274-430 4-196 (425)
196 KOG0093|consensus 99.5 5.1E-13 1.1E-17 119.0 12.0 152 277-441 22-185 (193)
197 KOG0095|consensus 99.5 3.4E-13 7.4E-18 120.3 10.6 152 276-440 7-170 (213)
198 TIGR03680 eif2g_arch translati 99.5 2.9E-13 6.2E-18 143.6 12.0 152 275-439 3-196 (406)
199 KOG0079|consensus 99.5 6.6E-13 1.4E-17 118.4 12.1 151 277-442 9-172 (198)
200 PTZ00132 GTP-binding nuclear p 99.5 1.2E-12 2.7E-17 126.4 15.1 150 275-439 8-168 (215)
201 PRK04000 translation initiatio 99.4 8.5E-13 1.8E-17 140.2 14.1 154 274-440 7-202 (411)
202 TIGR01393 lepA GTP-binding pro 99.4 1.6E-12 3.5E-17 143.7 15.7 150 277-441 4-182 (595)
203 PRK04004 translation initiatio 99.4 2.5E-12 5.5E-17 141.9 16.5 149 274-438 4-217 (586)
204 CHL00071 tufA elongation facto 99.4 9E-13 2E-17 139.9 12.2 148 275-438 11-210 (409)
205 PRK12736 elongation factor Tu; 99.4 1.2E-12 2.6E-17 138.4 13.0 150 274-439 10-201 (394)
206 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.5E-12 3.1E-17 127.4 12.6 98 324-436 83-220 (224)
207 KOG0073|consensus 99.4 4.2E-12 9E-17 115.3 13.9 149 276-440 16-179 (185)
208 COG3596 Predicted GTPase [Gene 99.4 2.1E-12 4.5E-17 127.0 12.3 159 275-440 38-223 (296)
209 cd01883 EF1_alpha Eukaryotic e 99.4 1.1E-12 2.5E-17 127.5 10.3 137 278-428 1-194 (219)
210 cd01886 EF-G Elongation factor 99.4 2.7E-12 5.9E-17 128.9 12.5 114 278-407 1-131 (270)
211 cd04168 TetM_like Tet(M)-like 99.4 3.2E-12 6.9E-17 126.1 12.5 113 278-406 1-130 (237)
212 COG1100 GTPase SAR1 and relate 99.4 1.1E-11 2.3E-16 119.4 15.9 152 277-440 6-186 (219)
213 COG0532 InfB Translation initi 99.4 2.6E-12 5.5E-17 136.3 12.4 148 274-438 3-169 (509)
214 PRK12735 elongation factor Tu; 99.4 2.3E-12 5E-17 136.3 12.1 150 274-439 10-203 (396)
215 TIGR00483 EF-1_alpha translati 99.4 2.7E-12 5.9E-17 137.0 11.0 142 274-429 5-197 (426)
216 KOG0086|consensus 99.4 7.7E-12 1.7E-16 112.2 12.0 149 276-439 9-171 (214)
217 cd01900 YchF YchF subfamily. 99.4 2.4E-12 5.3E-17 129.1 9.7 86 279-367 1-103 (274)
218 PRK09435 membrane ATPase/prote 99.4 1.4E-12 2.9E-17 134.2 8.1 128 324-496 148-294 (332)
219 KOG1487|consensus 99.3 5.5E-12 1.2E-16 122.3 11.2 208 193-439 5-281 (358)
220 PLN03127 Elongation factor Tu; 99.3 7.7E-12 1.7E-16 134.0 13.5 150 274-439 59-252 (447)
221 cd04102 RabL3 RabL3 (Rab-like3 99.3 1.3E-11 2.9E-16 118.7 13.8 121 278-407 2-144 (202)
222 PF08477 Miro: Miro-like prote 99.3 3.2E-12 7E-17 111.2 8.4 117 278-403 1-119 (119)
223 PTZ00327 eukaryotic translatio 99.3 5.1E-12 1.1E-16 135.4 11.5 153 273-440 31-234 (460)
224 cd04170 EF-G_bact Elongation f 99.3 1E-11 2.2E-16 124.5 12.8 114 278-407 1-131 (268)
225 PRK00049 elongation factor Tu; 99.3 5.9E-12 1.3E-16 133.2 11.6 149 275-439 11-203 (396)
226 PLN03126 Elongation factor Tu; 99.3 1.2E-11 2.7E-16 133.2 14.3 137 273-425 78-248 (478)
227 KOG0091|consensus 99.3 1.8E-11 3.9E-16 111.1 13.0 164 277-451 9-185 (213)
228 cd04169 RF3 RF3 subfamily. Pe 99.3 1.7E-11 3.6E-16 123.0 13.9 114 277-406 3-137 (267)
229 TIGR02034 CysN sulfate adenyly 99.3 7.7E-12 1.7E-16 132.7 11.8 137 278-429 2-187 (406)
230 PRK05506 bifunctional sulfate 99.3 8E-12 1.7E-16 139.7 12.4 140 275-429 23-211 (632)
231 PRK05433 GTP-binding protein L 99.3 1.5E-11 3.2E-16 136.2 14.1 151 276-441 7-186 (600)
232 PRK10218 GTP-binding protein; 99.3 2.5E-11 5.4E-16 134.1 15.8 151 275-441 4-197 (607)
233 KOG1145|consensus 99.3 9.9E-12 2.1E-16 131.1 11.9 150 273-438 150-315 (683)
234 TIGR00485 EF-Tu translation el 99.3 9.3E-12 2E-16 131.6 11.8 150 274-438 10-200 (394)
235 KOG0083|consensus 99.3 1.5E-12 3.2E-17 114.3 4.7 146 281-440 2-161 (192)
236 PRK09601 GTP-binding protein Y 99.3 7.4E-12 1.6E-16 129.7 10.7 88 277-367 3-107 (364)
237 PRK05124 cysN sulfate adenylyl 99.3 9.7E-12 2.1E-16 134.3 11.9 143 274-431 25-217 (474)
238 KOG0395|consensus 99.3 1.2E-11 2.5E-16 118.6 11.1 153 276-440 3-166 (196)
239 TIGR01394 TypA_BipA GTP-bindin 99.3 2.7E-11 5.9E-16 133.8 14.9 148 278-441 3-193 (594)
240 cd04105 SR_beta Signal recogni 99.3 4.9E-11 1.1E-15 114.8 14.0 118 277-407 1-124 (203)
241 cd04167 Snu114p Snu114p subfam 99.3 3.5E-11 7.7E-16 116.4 13.0 113 278-405 2-136 (213)
242 KOG0075|consensus 99.3 1.7E-11 3.7E-16 109.4 9.5 146 277-438 21-181 (186)
243 cd01853 Toc34_like Toc34-like 99.3 4.6E-11 1E-15 118.6 13.2 133 274-409 29-166 (249)
244 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.2E-11 9.1E-16 117.2 12.6 130 273-425 36-182 (225)
245 KOG0081|consensus 99.3 6.4E-12 1.4E-16 113.4 6.0 162 279-452 12-194 (219)
246 COG0012 Predicted GTPase, prob 99.2 1.6E-11 3.5E-16 125.7 8.1 89 276-368 2-109 (372)
247 KOG0088|consensus 99.2 1.4E-11 3.1E-16 111.1 6.3 153 275-441 12-177 (218)
248 TIGR02836 spore_IV_A stage IV 99.2 2.1E-10 4.5E-15 119.1 14.9 219 275-504 16-331 (492)
249 PLN00023 GTP-binding protein; 99.2 9.8E-11 2.1E-15 119.4 12.0 124 275-407 20-166 (334)
250 PTZ00141 elongation factor 1- 99.2 8.4E-11 1.8E-15 126.1 12.0 141 275-429 6-203 (446)
251 TIGR00750 lao LAO/AO transport 99.2 3.6E-10 7.9E-15 115.3 15.2 174 242-439 2-238 (300)
252 TIGR00991 3a0901s02IAP34 GTP-b 99.2 1.7E-10 3.6E-15 117.0 12.2 130 275-409 37-170 (313)
253 KOG0097|consensus 99.2 4.9E-10 1.1E-14 99.4 12.3 150 276-441 11-175 (215)
254 PRK13768 GTPase; Provisional 99.1 3.6E-10 7.8E-15 112.6 10.9 109 325-439 97-247 (253)
255 PF00350 Dynamin_N: Dynamin fa 99.1 5.7E-10 1.2E-14 103.0 11.5 68 325-402 101-168 (168)
256 PRK00741 prfC peptide chain re 99.1 5.8E-10 1.3E-14 121.8 13.3 116 276-406 10-145 (526)
257 KOG0076|consensus 99.1 1.9E-10 4.1E-15 105.6 7.7 154 275-441 16-189 (197)
258 TIGR00484 EF-G translation elo 99.1 4.2E-10 9.2E-15 127.0 12.0 134 275-424 9-171 (689)
259 PTZ00099 rab6; Provisional 99.1 4E-10 8.7E-15 106.1 9.6 107 323-440 27-143 (176)
260 smart00053 DYNc Dynamin, GTPas 99.1 1.2E-09 2.7E-14 107.6 12.7 127 274-407 24-207 (240)
261 KOG0070|consensus 99.1 3.3E-10 7.2E-15 105.3 8.2 148 275-439 16-178 (181)
262 COG2229 Predicted GTPase [Gene 99.1 2.4E-09 5.2E-14 99.6 13.6 148 275-437 9-176 (187)
263 PRK00007 elongation factor G; 99.1 5.5E-10 1.2E-14 126.1 11.3 134 275-424 9-171 (693)
264 PLN00043 elongation factor 1-a 99.1 7.9E-10 1.7E-14 118.7 11.8 141 275-429 6-203 (447)
265 cd01885 EF2 EF2 (for archaea a 99.0 1.8E-09 3.9E-14 105.5 12.4 115 278-407 2-140 (222)
266 COG4917 EutP Ethanolamine util 99.0 3.6E-10 7.8E-15 98.6 6.4 134 277-437 2-144 (148)
267 KOG1491|consensus 99.0 4.6E-10 1E-14 113.0 8.1 91 275-369 19-127 (391)
268 PF09439 SRPRB: Signal recogni 99.0 9.9E-10 2.1E-14 103.6 9.5 120 276-406 3-126 (181)
269 PRK10463 hydrogenase nickel in 99.0 1.9E-09 4.2E-14 108.5 12.1 50 250-299 78-127 (290)
270 PRK12739 elongation factor G; 99.0 1.4E-09 3E-14 122.9 12.1 117 275-407 7-140 (691)
271 cd01850 CDC_Septin CDC/Septin. 99.0 2.5E-09 5.4E-14 107.9 12.6 125 277-408 5-159 (276)
272 PRK13351 elongation factor G; 99.0 2.4E-09 5.3E-14 121.0 13.7 117 275-407 7-140 (687)
273 PF04548 AIG1: AIG1 family; I 99.0 3.7E-09 7.9E-14 102.5 12.3 158 278-441 2-188 (212)
274 TIGR00092 GTP-binding protein 99.0 1.6E-09 3.4E-14 112.6 10.1 89 277-368 3-109 (368)
275 KOG1532|consensus 99.0 2.9E-09 6.4E-14 104.4 11.2 160 274-440 17-265 (366)
276 TIGR00503 prfC peptide chain r 99.0 6.9E-09 1.5E-13 113.4 14.6 115 275-405 10-145 (527)
277 COG5257 GCD11 Translation init 99.0 6.1E-10 1.3E-14 111.3 5.5 153 275-440 9-203 (415)
278 KOG0462|consensus 99.0 2.4E-09 5.3E-14 113.4 10.1 151 276-441 60-237 (650)
279 KOG1144|consensus 98.9 3.2E-09 6.9E-14 115.3 10.5 153 273-441 472-689 (1064)
280 COG0481 LepA Membrane GTPase L 98.9 6.8E-09 1.5E-13 108.5 12.3 150 277-441 10-188 (603)
281 KOG3883|consensus 98.9 1.7E-08 3.7E-13 91.0 12.3 158 274-440 7-176 (198)
282 TIGR00073 hypB hydrogenase acc 98.9 9.5E-09 2.1E-13 99.1 11.5 147 268-437 14-205 (207)
283 PRK14845 translation initiatio 98.9 2.1E-08 4.5E-13 116.2 15.3 135 287-438 472-672 (1049)
284 KOG4252|consensus 98.9 1.5E-09 3.2E-14 100.1 4.7 152 276-440 20-182 (246)
285 TIGR00993 3a0901s04IAP86 chlor 98.9 1.2E-08 2.5E-13 111.6 12.0 130 275-407 117-251 (763)
286 COG5256 TEF1 Translation elong 98.9 4.6E-09 1E-13 108.6 8.3 141 275-429 6-201 (428)
287 KOG1707|consensus 98.9 7.5E-09 1.6E-13 110.6 9.3 153 275-438 8-174 (625)
288 PRK12740 elongation factor G; 98.8 1.6E-08 3.5E-13 114.0 12.4 109 282-406 1-126 (668)
289 PRK07560 elongation factor EF- 98.8 1.7E-08 3.8E-13 114.7 12.4 117 275-406 19-153 (731)
290 PF03308 ArgK: ArgK protein; 98.8 3.1E-09 6.7E-14 104.6 5.4 144 274-439 27-230 (266)
291 PF05049 IIGP: Interferon-indu 98.8 3E-08 6.4E-13 103.2 12.9 165 249-441 20-220 (376)
292 COG3276 SelB Selenocysteine-sp 98.8 1.9E-08 4.2E-13 104.8 11.4 146 278-438 2-161 (447)
293 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 3.1E-08 6.6E-13 97.3 11.5 154 278-438 1-175 (232)
294 COG1703 ArgK Putative periplas 98.8 2.5E-08 5.4E-13 99.5 10.6 178 241-440 14-255 (323)
295 cd04178 Nucleostemin_like Nucl 98.8 1.1E-08 2.4E-13 96.1 7.2 58 274-335 115-172 (172)
296 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.7E-08 3.6E-13 92.9 7.7 56 276-335 102-157 (157)
297 TIGR00101 ureG urease accessor 98.7 1.1E-07 2.3E-12 91.5 12.4 92 325-438 92-195 (199)
298 PF03029 ATP_bind_1: Conserved 98.7 9E-09 2E-13 101.6 4.9 109 326-438 92-236 (238)
299 PTZ00416 elongation factor 2; 98.7 4.3E-08 9.3E-13 112.9 10.8 116 275-405 18-157 (836)
300 KOG0074|consensus 98.7 2.9E-08 6.3E-13 88.4 6.4 149 275-438 16-178 (185)
301 TIGR00490 aEF-2 translation el 98.7 6.6E-08 1.4E-12 109.8 10.6 117 275-406 18-152 (720)
302 KOG2486|consensus 98.7 5.8E-08 1.3E-12 95.8 8.5 152 275-437 135-314 (320)
303 KOG0393|consensus 98.7 2E-08 4.3E-13 95.5 5.1 151 276-440 4-180 (198)
304 PRK09563 rbgA GTPase YlqF; Rev 98.7 6.9E-08 1.5E-12 97.9 9.1 60 274-337 119-178 (287)
305 KOG0071|consensus 98.7 1.6E-07 3.4E-12 83.7 10.1 147 276-438 17-177 (180)
306 KOG0090|consensus 98.6 6.2E-08 1.3E-12 92.2 7.6 150 275-437 37-237 (238)
307 TIGR03596 GTPase_YlqF ribosome 98.6 8.1E-08 1.8E-12 96.9 8.7 60 274-337 116-175 (276)
308 cd01849 YlqF_related_GTPase Yl 98.6 9.6E-08 2.1E-12 87.7 8.1 58 274-335 98-155 (155)
309 COG1161 Predicted GTPases [Gen 98.6 5.9E-08 1.3E-12 100.0 7.4 60 274-337 130-189 (322)
310 PLN00116 translation elongatio 98.6 2.4E-07 5.3E-12 106.8 12.9 117 275-406 18-164 (843)
311 KOG0461|consensus 98.6 1.6E-07 3.5E-12 94.8 9.8 151 276-441 7-195 (522)
312 COG1217 TypA Predicted membran 98.6 2.5E-07 5.5E-12 96.7 11.6 154 275-443 4-199 (603)
313 KOG0077|consensus 98.6 7.1E-08 1.5E-12 88.3 6.6 147 274-436 18-190 (193)
314 COG2895 CysN GTPases - Sulfate 98.6 1.1E-07 2.3E-12 96.6 8.5 139 275-428 5-192 (431)
315 cd01856 YlqF YlqF. Proteins o 98.6 1.4E-07 3.1E-12 88.0 8.6 59 273-335 112-170 (171)
316 KOG0458|consensus 98.5 3E-07 6.5E-12 98.6 9.8 142 275-430 176-373 (603)
317 cd01855 YqeH YqeH. YqeH is an 98.5 1.7E-07 3.7E-12 88.9 7.0 56 276-335 127-190 (190)
318 COG4108 PrfC Peptide chain rel 98.5 7.1E-07 1.5E-11 92.9 11.7 116 278-408 14-149 (528)
319 COG0378 HypB Ni2+-binding GTPa 98.5 5.1E-07 1.1E-11 85.3 9.5 69 359-438 120-200 (202)
320 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.3E-07 2.9E-12 85.4 5.2 55 278-336 85-139 (141)
321 COG1136 SalX ABC-type antimicr 98.5 7E-08 1.5E-12 93.9 3.0 149 273-440 28-191 (226)
322 KOG0072|consensus 98.5 1.8E-07 3.8E-12 83.8 5.0 148 276-439 18-179 (182)
323 COG1126 GlnQ ABC-type polar am 98.4 2.3E-07 4.9E-12 89.0 5.3 145 274-442 26-187 (240)
324 PF03193 DUF258: Protein of un 98.4 2.4E-07 5.2E-12 85.8 5.1 61 277-337 36-99 (161)
325 cd01851 GBP Guanylate-binding 98.4 6E-07 1.3E-11 87.9 7.9 94 274-369 5-104 (224)
326 cd01859 MJ1464 MJ1464. This f 98.4 1.2E-06 2.6E-11 80.3 8.5 83 351-440 6-97 (156)
327 PF00735 Septin: Septin; Inte 98.4 2.6E-06 5.7E-11 86.2 11.5 126 277-409 5-159 (281)
328 PRK10416 signal recognition pa 98.4 1.7E-06 3.8E-11 88.9 9.7 147 275-433 113-304 (318)
329 cd01858 NGP_1 NGP-1. Autoanti 98.3 6.5E-07 1.4E-11 82.3 5.9 83 351-438 3-94 (157)
330 PRK12289 GTPase RsgA; Reviewed 98.3 5.5E-07 1.2E-11 93.8 5.3 56 278-337 174-236 (352)
331 TIGR00157 ribosome small subun 98.3 7.4E-07 1.6E-11 88.4 5.8 60 277-337 121-183 (245)
332 PRK13796 GTPase YqeH; Provisio 98.3 7.8E-07 1.7E-11 93.3 5.9 57 277-337 161-222 (365)
333 PRK12288 GTPase RsgA; Reviewed 98.3 4.2E-07 9.2E-12 94.5 3.7 58 278-337 207-269 (347)
334 TIGR03597 GTPase_YqeH ribosome 98.3 1.2E-06 2.6E-11 91.7 7.0 57 277-337 155-216 (360)
335 TIGR00064 ftsY signal recognit 98.3 3.8E-06 8.1E-11 84.7 9.5 146 275-433 71-262 (272)
336 cd01859 MJ1464 MJ1464. This f 98.2 3.3E-06 7.2E-11 77.3 8.1 57 275-335 100-156 (156)
337 COG0480 FusA Translation elong 98.2 4.8E-06 1E-10 93.5 10.7 120 274-408 8-144 (697)
338 KOG1424|consensus 98.2 6.3E-07 1.4E-11 94.9 3.5 60 274-337 312-371 (562)
339 COG1116 TauB ABC-type nitrate/ 98.2 3.6E-06 7.8E-11 82.6 8.0 140 273-440 26-179 (248)
340 cd01856 YlqF YlqF. Proteins o 98.2 1.6E-06 3.5E-11 81.0 5.0 89 342-439 5-101 (171)
341 PRK00098 GTPase RsgA; Reviewed 98.2 1.5E-06 3.1E-11 88.8 5.1 60 276-337 164-228 (298)
342 PRK14974 cell division protein 98.2 4E-06 8.7E-11 86.8 8.3 146 275-433 139-324 (336)
343 COG3638 ABC-type phosphate/pho 98.2 1.2E-06 2.6E-11 85.0 3.7 156 273-441 27-197 (258)
344 KOG0096|consensus 98.2 4.7E-06 1E-10 78.1 7.2 150 276-440 10-170 (216)
345 COG1135 AbcC ABC-type metal io 98.2 1.5E-06 3.3E-11 87.3 4.3 146 273-438 29-188 (339)
346 cd03112 CobW_like The function 98.2 2.9E-06 6.3E-11 78.5 5.7 118 277-404 1-158 (158)
347 COG1120 FepC ABC-type cobalami 98.2 3.1E-06 6.6E-11 84.1 6.1 42 273-314 25-66 (258)
348 COG1122 CbiO ABC-type cobalt t 98.1 3.3E-06 7.1E-11 83.2 5.8 146 273-440 27-187 (235)
349 KOG4423|consensus 98.1 2.8E-07 6.1E-12 85.8 -1.9 154 276-440 25-195 (229)
350 COG1162 Predicted GTPases [Gen 98.1 2.5E-06 5.5E-11 86.0 4.6 62 276-337 164-228 (301)
351 cd01854 YjeQ_engC YjeQ/EngC. 98.1 3.5E-06 7.6E-11 85.5 5.5 61 277-337 162-225 (287)
352 COG1124 DppF ABC-type dipeptid 98.1 9.3E-06 2E-10 79.3 8.2 168 273-467 30-214 (252)
353 KOG3886|consensus 98.1 2.7E-06 5.8E-11 82.0 4.1 127 277-409 5-133 (295)
354 TIGR00157 ribosome small subun 98.1 7E-06 1.5E-10 81.5 7.2 78 353-436 33-120 (245)
355 COG1131 CcmA ABC-type multidru 98.1 2.2E-06 4.7E-11 87.3 3.5 143 274-440 29-185 (293)
356 cd01855 YqeH YqeH. YqeH is an 98.1 1E-05 2.2E-10 76.6 7.8 84 347-439 24-125 (190)
357 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 1.1E-05 2.4E-10 79.9 7.8 147 274-440 28-188 (254)
358 COG0050 TufB GTPases - transla 98.0 2.2E-05 4.7E-10 78.3 9.2 151 275-440 11-202 (394)
359 PF00448 SRP54: SRP54-type pro 98.0 5.6E-06 1.2E-10 79.4 5.0 118 278-406 3-154 (196)
360 KOG1954|consensus 98.0 3.2E-05 6.9E-10 79.2 10.1 130 274-409 56-228 (532)
361 KOG0466|consensus 98.0 2.4E-06 5.2E-11 85.2 1.1 153 275-440 37-242 (466)
362 TIGR03596 GTPase_YlqF ribosome 97.9 1.1E-05 2.3E-10 81.5 5.6 89 343-440 8-104 (276)
363 KOG0468|consensus 97.9 2.3E-05 5E-10 85.1 8.1 115 277-406 129-263 (971)
364 KOG1707|consensus 97.9 0.00013 2.7E-09 78.8 13.5 149 273-438 422-582 (625)
365 cd01849 YlqF_related_GTPase Yl 97.9 1.3E-05 2.7E-10 73.6 5.2 74 358-438 1-84 (155)
366 COG5258 GTPBP1 GTPase [General 97.9 1.9E-05 4.1E-10 81.2 6.4 148 274-436 115-336 (527)
367 COG5019 CDC3 Septin family pro 97.9 0.00014 3E-09 74.9 12.6 129 275-410 22-180 (373)
368 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.4E-05 3.1E-10 72.1 4.9 74 348-426 3-84 (141)
369 TIGR00960 3a0501s02 Type II (G 97.9 3.8E-06 8.1E-11 81.3 1.0 41 274-314 27-67 (216)
370 COG2884 FtsE Predicted ATPase 97.9 3.3E-05 7.1E-10 73.0 7.0 146 272-437 24-183 (223)
371 KOG3905|consensus 97.9 0.0001 2.2E-09 74.5 10.9 186 270-464 46-324 (473)
372 cd03265 ABC_DrrA DrrA is the A 97.9 7.3E-06 1.6E-10 79.5 2.7 142 274-439 24-179 (220)
373 PRK12289 GTPase RsgA; Reviewed 97.9 2.4E-05 5.1E-10 81.7 6.6 79 353-437 86-173 (352)
374 TIGR01188 drrA daunorubicin re 97.9 7.7E-06 1.7E-10 83.5 2.9 142 273-438 16-171 (302)
375 cd03259 ABC_Carb_Solutes_like 97.8 1.4E-05 2.9E-10 77.2 4.2 142 273-439 23-178 (213)
376 KOG1673|consensus 97.8 3.8E-05 8.3E-10 69.8 6.6 152 276-440 20-187 (205)
377 PRK11889 flhF flagellar biosyn 97.8 3.2E-05 7E-10 81.1 6.9 121 275-406 240-391 (436)
378 PRK11248 tauB taurine transpor 97.8 1.7E-05 3.8E-10 79.0 4.7 138 273-438 24-175 (255)
379 KOG2484|consensus 97.8 1.1E-05 2.4E-10 83.4 3.3 61 273-337 249-309 (435)
380 cd03293 ABC_NrtD_SsuB_transpor 97.8 1.2E-05 2.6E-10 78.0 3.3 139 273-439 27-179 (220)
381 cd03225 ABC_cobalt_CbiO_domain 97.8 8.5E-06 1.9E-10 78.4 2.2 41 273-313 24-64 (211)
382 cd03266 ABC_NatA_sodium_export 97.8 6.6E-06 1.4E-10 79.6 1.3 142 273-438 28-183 (218)
383 cd03261 ABC_Org_Solvent_Resist 97.8 1.4E-05 3.1E-10 78.3 3.7 148 273-439 23-184 (235)
384 TIGR02314 ABC_MetN D-methionin 97.8 7.3E-06 1.6E-10 85.3 1.7 147 273-439 28-188 (343)
385 PRK11650 ugpC glycerol-3-phosp 97.8 2.2E-05 4.8E-10 82.2 5.2 141 274-439 28-182 (356)
386 TIGR01166 cbiO cobalt transpor 97.8 3E-05 6.4E-10 73.5 5.5 42 273-314 15-56 (190)
387 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 1.1E-05 2.4E-10 78.0 2.6 41 273-313 27-67 (218)
388 TIGR01425 SRP54_euk signal rec 97.8 4.9E-05 1.1E-09 81.0 7.5 71 324-406 182-253 (429)
389 TIGR02673 FtsE cell division A 97.8 8.3E-06 1.8E-10 78.7 1.5 42 273-314 25-66 (214)
390 PRK14722 flhF flagellar biosyn 97.8 6.5E-05 1.4E-09 78.8 8.2 129 274-406 135-295 (374)
391 PRK13537 nodulation ABC transp 97.8 1.6E-05 3.4E-10 81.5 3.6 141 274-438 31-185 (306)
392 PRK11153 metN DL-methionine tr 97.8 8.6E-06 1.9E-10 84.8 1.6 146 274-439 29-188 (343)
393 PRK11000 maltose/maltodextrin 97.8 2.8E-05 6E-10 81.8 5.3 141 274-439 27-181 (369)
394 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 1.9E-05 4.1E-10 77.5 3.7 142 273-438 24-179 (236)
395 cd03263 ABC_subfamily_A The AB 97.7 1.3E-05 2.9E-10 77.6 2.3 41 273-313 25-65 (220)
396 PRK10908 cell division protein 97.7 1.2E-05 2.7E-10 78.0 2.0 41 274-314 26-66 (222)
397 cd03218 ABC_YhbG The ABC trans 97.7 1.8E-05 3.9E-10 77.3 3.2 41 273-313 23-63 (232)
398 PRK01889 GTPase RsgA; Reviewed 97.7 2.7E-05 5.9E-10 81.5 4.7 61 275-337 194-259 (356)
399 PRK13536 nodulation factor exp 97.7 1.4E-05 3E-10 83.2 2.4 142 273-438 64-219 (340)
400 cd01854 YjeQ_engC YjeQ/EngC. 97.7 3.4E-05 7.3E-10 78.4 5.2 77 354-436 76-161 (287)
401 PRK14721 flhF flagellar biosyn 97.7 4.4E-05 9.5E-10 81.2 6.2 146 274-432 189-371 (420)
402 cd03296 ABC_CysA_sulfate_impor 97.7 4E-05 8.7E-10 75.3 5.5 144 274-439 26-184 (239)
403 PRK10851 sulfate/thiosulfate t 97.7 4.3E-05 9.4E-10 79.9 5.9 144 274-439 26-184 (353)
404 PRK09563 rbgA GTPase YlqF; Rev 97.7 3.3E-05 7.1E-10 78.4 4.9 89 344-441 12-108 (287)
405 TIGR03348 VI_IcmF type VI secr 97.7 0.00015 3.3E-09 86.8 11.2 131 271-407 106-258 (1169)
406 KOG2423|consensus 97.7 2E-05 4.4E-10 81.2 3.3 59 275-337 306-364 (572)
407 COG1419 FlhF Flagellar GTP-bin 97.7 6.1E-05 1.3E-09 78.9 6.8 120 276-406 203-352 (407)
408 PRK00098 GTPase RsgA; Reviewed 97.7 3.8E-05 8.3E-10 78.4 5.3 76 354-435 78-163 (298)
409 TIGR03522 GldA_ABC_ATP gliding 97.7 1.9E-05 4.1E-10 80.7 3.1 41 274-314 26-66 (301)
410 PRK13632 cbiO cobalt transport 97.7 1.5E-05 3.2E-10 80.1 2.1 145 273-439 32-190 (271)
411 TIGR01288 nodI ATP-binding ABC 97.7 1.7E-05 3.7E-10 81.0 2.6 142 273-438 27-182 (303)
412 cd03298 ABC_ThiQ_thiamine_tran 97.7 5.9E-05 1.3E-09 72.6 6.2 141 273-438 21-175 (211)
413 PRK12727 flagellar biosynthesi 97.7 0.00014 3E-09 79.1 9.5 121 274-406 348-498 (559)
414 TIGR02211 LolD_lipo_ex lipopro 97.7 1.3E-05 2.9E-10 77.6 1.6 41 274-314 29-69 (221)
415 PRK12726 flagellar biosynthesi 97.7 6.9E-05 1.5E-09 78.4 6.9 121 274-405 204-355 (407)
416 cd03235 ABC_Metallic_Cations A 97.7 4.3E-05 9.3E-10 73.7 4.8 41 273-313 22-62 (213)
417 cd03301 ABC_MalK_N The N-termi 97.7 3.9E-05 8.5E-10 73.9 4.5 142 273-439 23-178 (213)
418 cd03295 ABC_OpuCA_Osmoprotecti 97.7 3.2E-05 6.9E-10 76.2 3.8 144 273-439 24-183 (242)
419 PRK13637 cbiO cobalt transport 97.7 2.1E-05 4.6E-10 79.8 2.6 147 273-439 30-192 (287)
420 PRK12724 flagellar biosynthesi 97.7 0.00012 2.7E-09 77.5 8.3 121 276-406 223-373 (432)
421 cd03267 ABC_NatA_like Similar 97.7 3.1E-05 6.6E-10 76.2 3.5 40 273-312 44-83 (236)
422 PRK12723 flagellar biosynthesi 97.7 0.00026 5.6E-09 74.8 10.6 122 275-406 173-326 (388)
423 PRK13650 cbiO cobalt transport 97.7 1.7E-05 3.6E-10 80.2 1.6 145 273-439 30-188 (279)
424 cd03264 ABC_drug_resistance_li 97.6 1.4E-05 3E-10 77.1 0.8 38 275-313 25-62 (211)
425 KOG2655|consensus 97.6 0.00024 5.2E-09 73.6 9.8 129 275-410 20-176 (366)
426 cd03219 ABC_Mj1267_LivG_branch 97.6 2.6E-05 5.6E-10 76.4 2.6 40 274-313 24-63 (236)
427 cd03269 ABC_putative_ATPase Th 97.6 2.3E-05 5E-10 75.4 2.2 40 274-313 24-63 (210)
428 KOG2485|consensus 97.6 5.6E-05 1.2E-09 76.1 4.9 70 267-337 134-208 (335)
429 PRK05703 flhF flagellar biosyn 97.6 0.00016 3.5E-09 77.4 8.7 122 275-406 220-371 (424)
430 PRK13635 cbiO cobalt transport 97.6 2.3E-05 5E-10 79.2 2.1 42 273-314 30-71 (279)
431 cd03294 ABC_Pro_Gly_Bertaine T 97.6 3.2E-05 6.8E-10 77.7 2.8 41 273-313 47-87 (269)
432 COG5192 BMS1 GTP-binding prote 97.6 0.00022 4.8E-09 76.4 9.1 116 271-408 64-179 (1077)
433 TIGR03265 PhnT2 putative 2-ami 97.6 5.5E-05 1.2E-09 79.1 4.6 41 274-314 28-68 (353)
434 PRK13647 cbiO cobalt transport 97.6 5E-05 1.1E-09 76.5 4.0 144 273-438 28-185 (274)
435 PRK11432 fbpC ferric transport 97.6 6.7E-05 1.5E-09 78.4 5.0 42 273-314 29-70 (351)
436 PRK09452 potA putrescine/sperm 97.6 6.7E-05 1.5E-09 79.1 5.0 41 274-314 38-78 (375)
437 COG3842 PotA ABC-type spermidi 97.6 0.00016 3.4E-09 75.1 7.6 43 274-316 29-71 (352)
438 COG1117 PstB ABC-type phosphat 97.6 6.3E-05 1.4E-09 72.3 4.2 63 274-341 31-98 (253)
439 PRK13638 cbiO cobalt transport 97.6 2.7E-05 5.8E-10 78.2 1.8 42 273-314 24-65 (271)
440 KOG0448|consensus 97.6 0.0007 1.5E-08 74.4 12.6 121 275-408 108-277 (749)
441 PRK13648 cbiO cobalt transport 97.6 3.2E-05 6.9E-10 77.6 2.1 41 274-314 33-73 (269)
442 PRK10771 thiQ thiamine transpo 97.6 0.00011 2.3E-09 72.0 5.8 142 273-439 22-177 (232)
443 TIGR01277 thiQ thiamine ABC tr 97.6 8.1E-05 1.8E-09 71.9 4.7 142 273-439 21-176 (213)
444 PRK14723 flhF flagellar biosyn 97.5 0.00027 5.9E-09 80.0 9.3 147 275-432 184-368 (767)
445 PRK11607 potG putrescine trans 97.5 8.4E-05 1.8E-09 78.4 5.0 41 274-314 43-83 (377)
446 cd03114 ArgK-like The function 97.5 0.00031 6.8E-09 64.3 8.0 21 279-299 2-22 (148)
447 PRK13636 cbiO cobalt transport 97.5 4E-05 8.7E-10 77.5 2.2 42 273-314 29-70 (283)
448 COG3523 IcmF Type VI protein s 97.5 0.00028 6E-09 82.9 9.3 160 244-407 96-271 (1188)
449 TIGR02769 nickel_nikE nickel i 97.5 8.5E-05 1.8E-09 74.3 4.5 41 273-313 34-74 (265)
450 PRK12288 GTPase RsgA; Reviewed 97.5 0.00017 3.8E-09 75.1 7.0 77 355-437 119-206 (347)
451 PRK13642 cbiO cobalt transport 97.5 3.7E-05 8E-10 77.5 1.8 42 273-314 30-71 (277)
452 TIGR03258 PhnT 2-aminoethylpho 97.5 8.3E-05 1.8E-09 78.0 4.5 141 274-439 29-185 (362)
453 PRK13634 cbiO cobalt transport 97.5 0.0001 2.2E-09 74.9 5.0 148 273-439 30-193 (290)
454 PRK11308 dppF dipeptide transp 97.5 8.3E-05 1.8E-09 76.9 4.2 149 273-439 38-202 (327)
455 PRK10070 glycine betaine trans 97.5 3.6E-05 7.9E-10 81.7 1.6 42 273-314 51-92 (400)
456 TIGR03411 urea_trans_UrtD urea 97.5 0.00021 4.6E-09 70.3 6.9 41 273-313 25-65 (242)
457 PRK13796 GTPase YqeH; Provisio 97.5 0.00028 6.2E-09 74.1 8.0 85 345-438 57-158 (365)
458 COG3845 ABC-type uncharacteriz 97.5 0.00028 6.2E-09 75.1 7.9 141 274-439 28-188 (501)
459 PRK01889 GTPase RsgA; Reviewed 97.5 0.00018 3.9E-09 75.3 6.3 76 354-435 110-193 (356)
460 PF05783 DLIC: Dynein light in 97.5 0.001 2.2E-08 72.0 12.0 61 393-453 197-284 (472)
461 TIGR01186 proV glycine betaine 97.5 8.1E-05 1.8E-09 78.1 3.5 43 273-315 16-58 (363)
462 PRK06731 flhF flagellar biosyn 97.5 0.00026 5.7E-09 71.2 7.0 121 275-406 74-225 (270)
463 COG0411 LivG ABC-type branched 97.4 3.8E-05 8.3E-10 75.1 0.8 43 274-316 28-70 (250)
464 cd03115 SRP The signal recogni 97.4 0.00042 9E-09 64.6 7.8 73 324-407 82-154 (173)
465 COG4152 ABC-type uncharacteriz 97.4 5.1E-05 1.1E-09 74.3 1.5 40 273-312 25-64 (300)
466 PRK15093 antimicrobial peptide 97.4 0.00013 2.8E-09 75.6 4.6 42 273-314 30-75 (330)
467 PRK13633 cobalt transporter AT 97.4 8.3E-05 1.8E-09 75.1 3.1 42 273-314 33-74 (280)
468 PRK13640 cbiO cobalt transport 97.4 4.9E-05 1.1E-09 76.8 1.5 42 273-314 30-74 (282)
469 COG0410 LivF ABC-type branched 97.4 0.00017 3.8E-09 70.0 5.0 44 274-317 27-70 (237)
470 PRK10762 D-ribose transporter 97.4 0.00014 3E-09 79.5 4.8 146 274-438 28-188 (501)
471 smart00010 small_GTPase Small 97.4 0.00015 3.1E-09 62.7 3.9 112 278-428 2-115 (124)
472 COG3839 MalK ABC-type sugar tr 97.4 0.00019 4E-09 74.2 5.0 44 273-316 26-69 (338)
473 COG4988 CydD ABC-type transpor 97.4 0.00016 3.4E-09 78.5 4.7 42 273-314 344-385 (559)
474 COG3840 ThiQ ABC-type thiamine 97.4 0.0002 4.3E-09 67.4 4.6 42 274-315 23-64 (231)
475 TIGR03597 GTPase_YqeH ribosome 97.4 0.00038 8.3E-09 73.0 7.3 83 346-437 52-151 (360)
476 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0013 2.7E-08 59.8 9.7 35 273-307 23-57 (144)
477 PRK15079 oligopeptide ABC tran 97.3 0.00014 3E-09 75.4 3.6 42 273-314 44-85 (331)
478 PRK15439 autoinducer 2 ABC tra 97.3 0.00022 4.7E-09 78.2 4.9 140 273-438 34-187 (510)
479 PRK09700 D-allose transporter 97.3 0.0003 6.4E-09 77.1 5.5 150 273-438 28-192 (510)
480 COG4608 AppF ABC-type oligopep 97.3 0.00046 9.9E-09 68.7 6.2 43 272-314 35-77 (268)
481 PRK10261 glutathione transport 97.3 0.00028 6E-09 79.3 5.2 149 273-439 347-511 (623)
482 PRK13549 xylose transporter AT 97.3 0.0002 4.4E-09 78.3 4.0 146 274-438 29-190 (506)
483 COG0444 DppD ABC-type dipeptid 97.2 0.00027 5.8E-09 71.9 4.3 151 273-439 28-201 (316)
484 KOG0465|consensus 97.2 0.00029 6.4E-09 76.3 4.7 119 275-408 38-172 (721)
485 TIGR03269 met_CoM_red_A2 methy 97.2 0.00013 2.8E-09 80.1 2.1 36 274-309 24-61 (520)
486 PRK09536 btuD corrinoid ABC tr 97.2 0.00036 7.8E-09 74.2 5.2 41 274-314 27-67 (402)
487 PRK00771 signal recognition pa 97.2 0.00064 1.4E-08 72.9 7.1 69 325-405 176-245 (437)
488 TIGR03415 ABC_choXWV_ATP choli 97.2 0.00013 2.7E-09 77.1 1.5 39 273-311 47-85 (382)
489 COG4559 ABC-type hemin transpo 97.2 0.00038 8.2E-09 67.0 4.4 42 273-314 24-65 (259)
490 PF00005 ABC_tran: ABC transpo 97.2 0.00023 5E-09 63.3 2.8 41 274-314 9-49 (137)
491 PRK10982 galactose/methyl gala 97.2 0.00033 7.1E-09 76.4 4.5 41 274-314 22-62 (491)
492 KOG1547|consensus 97.2 0.0022 4.9E-08 62.6 9.6 125 277-409 47-201 (336)
493 PRK06995 flhF flagellar biosyn 97.2 0.00061 1.3E-08 73.8 6.2 25 275-299 255-279 (484)
494 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00055 1.2E-08 64.6 5.1 36 274-309 23-58 (177)
495 cd03257 ABC_NikE_OppD_transpor 97.2 0.00052 1.1E-08 66.6 5.1 42 273-314 28-69 (228)
496 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00053 1.1E-08 65.7 4.9 41 273-313 23-63 (205)
497 cd03216 ABC_Carb_Monos_I This 97.1 0.00065 1.4E-08 63.0 5.0 38 273-310 23-60 (163)
498 PF02492 cobW: CobW/HypB/UreG, 97.1 0.00073 1.6E-08 63.6 5.5 74 324-408 84-157 (178)
499 cd03292 ABC_FtsE_transporter F 97.1 0.00065 1.4E-08 65.4 5.1 40 274-313 25-64 (214)
500 cd03258 ABC_MetN_methionine_tr 97.1 0.00066 1.4E-08 66.3 5.2 42 273-314 28-69 (233)
No 1
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=2e-86 Score=674.71 Aligned_cols=395 Identities=29% Similarity=0.437 Sum_probs=360.1
Q ss_pred CCCeEEEEEeeeecCccccCCCChhchHHHHHHHHHhcCCCeeEEEEEEeccCCCCcceeccchHHHHHHHHhccCCeeE
Q psy50 84 TDHQVFVVQPFIKWGKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTA 163 (505)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~ 163 (505)
.++|+++|+..... ...+++|+|+.+||+|+| ++|++.++|+++.|||+||+|+||++||++.++. .++++
T Consensus 2 ~~~r~~~v~v~~~~-------~~~~~~leEl~~La~tag-~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~-~~ad~ 72 (411)
T COG2262 2 KGERALLVGVSKDQ-------DDFEESLEELAELAETAG-YEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEE-TGADL 72 (411)
T ss_pred CccceEEEEecccc-------ccchhhHHHHHHHHHHcC-CeEeeeEEEeccCCCcceecCcchHHHHHHHHHh-cCCCE
Confidence 46789999865322 357889999999999996 5999999999999999999999999999999996 58999
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc------ccc--CcCCCC
Q psy50 164 VFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI------EDA--TNMNIT 235 (505)
Q Consensus 164 v~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~~------~~g--~~~g~g 235 (505)
|||| ++|||+|.+|||+++|++|+|||+|||+||++||+|+|||||||||||+|++|||.+. .|| |++|||
T Consensus 73 VIf~-~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpG 151 (411)
T COG2262 73 VIFD-HELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPG 151 (411)
T ss_pred EEEC-CcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCC
Confidence 9997 7999999999999999999999999999999999999999999999999999999975 343 799999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee
Q psy50 236 KGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315 (505)
Q Consensus 236 e~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t 315 (505)
|+++|.|||.++.||.+|+++|+.++++|+.+|.+|.+++.|.|++|||||||||||||+|++.. ..+.|++|+|+|+|
T Consensus 152 E~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpt 230 (411)
T COG2262 152 ETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPT 230 (411)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 66899999999999
Q ss_pred eeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE
Q psy50 316 THEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395 (505)
Q Consensus 316 ~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~ 395 (505)
++...++++.++++.||+|||+++|+.++++|++|++++.+||+++||+|+|+|...++.+.+.++|.++++.+ .|+
T Consensus 231 tR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~---~p~ 307 (411)
T COG2262 231 TRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE---IPI 307 (411)
T ss_pred eeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC---CCE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999876 499
Q ss_pred EEEEeCCCCCCCCCCCC-----CCCeEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecC-CCcccccccCCCeEEE
Q psy50 396 LVVGNKVDAVPPGERVT-----EEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRS-GGSEYQWLMKHTAVSN 469 (505)
Q Consensus 396 IlV~NKiDl~~~~~~~~-----~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~-~~~~~~~l~~~~~v~~ 469 (505)
|+|+||+|++....... .+..+++||++|.|++.|++.|.+.+.. .....++.+|+ .+..++|+|..+.+..
T Consensus 308 i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~--~~~~~~l~lp~~~~~~~~~l~~~~~v~~ 385 (411)
T COG2262 308 ILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG--LRTEVTLELPYTDAGRLSWLHDNGIVLE 385 (411)
T ss_pred EEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh--cccceEEEcCcccccHHHHHHhcceeee
Confidence 99999999886654211 2358999999999999999999999975 34678899997 5678999999999998
Q ss_pred eeecCCCCeEEEEEEEecHHHHHHHHHHh
Q psy50 470 IREDDTSAEHLLLDVVMTDVIMNKFKHEF 498 (505)
Q Consensus 470 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~ 498 (505)
. .|.++ ..+...+++....++..+.
T Consensus 386 ~-~~~e~---~~i~~~~~~~~~~~~~~~~ 410 (411)
T COG2262 386 E-EYGED---VRIKAEAPERLAKRLQEFA 410 (411)
T ss_pred c-ccCCc---eEEEEEECHHHHHhhhhhc
Confidence 7 66555 4579999999999987653
No 2
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=7.9e-75 Score=612.79 Aligned_cols=398 Identities=26% Similarity=0.336 Sum_probs=345.4
Q ss_pred CCeEEEEEeeeecCccccCCCChhchHHHHHHHHHhcCCCeeEEEEEEeccCCCCcceeccchHHHHHHHHhccCCeeEE
Q psy50 85 DHQVFVVQPFIKWGKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAV 164 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~v 164 (505)
.+|++||++..+. ...+++|+||.+||+|+| ++||++++|++++|||+||||+||++||+++++. .++++|
T Consensus 8 ~~~~~l~~~~~~~-------~~~~~~~~El~~L~~~~g-~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~-~~~~~v 78 (426)
T PRK11058 8 GEQAVLVHIYFSQ-------DKDMEDLQEFESLVSSAG-VEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKA-TGASVV 78 (426)
T ss_pred CceEEEEEecCCC-------CchhhhHHHHHHHHHHCC-CEEEEEEEEecCCCCCCeeecccHHHHHHHHHHh-cCCCEE
Confidence 4799999965321 134678999999999996 5999999999999999999999999999999986 588999
Q ss_pred EEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc------ccc--CcCCCCC
Q psy50 165 FVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI------EDA--TNMNITK 236 (505)
Q Consensus 165 ~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~~------~~g--~~~g~ge 236 (505)
||| ++|||+|.||||+.||++|+|||+|||+||++||+|+|||||||||+|+|.+|||.+. +|| |++||||
T Consensus 79 i~~-~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge 157 (426)
T PRK11058 79 LFD-HALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGE 157 (426)
T ss_pred EEC-CCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCCh
Confidence 987 7999999999999999999999999999999999999999999999999999999763 444 7999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee
Q psy50 237 GFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316 (505)
Q Consensus 237 ~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~ 316 (505)
+++|+|++.++++|..++++|+++.++|...|..|...+.|.|+|+|+||||||||||+|++... .+.+.+|+|+|++.
T Consensus 158 ~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~ 236 (426)
T PRK11058 158 TQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTL 236 (426)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCce
Confidence 99999999999999999999999999998878777777889999999999999999999999874 47899999999988
Q ss_pred eccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 317 HEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 317 ~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
+...+++..++.++|||||+.++|+++++.|.++++++..||++++|+|++++....+...+.+++..++..+ .|++
T Consensus 237 ~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~---~pvI 313 (426)
T PRK11058 237 RRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE---IPTL 313 (426)
T ss_pred EEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC---CCEE
Confidence 7776666568899999999888888999999999999999999999999999987766666777888775433 5999
Q ss_pred EEEeCCCCCCCCCC-----CCCCC-eEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecC-CCcccccccCCCeEEE
Q psy50 397 VVGNKVDAVPPGER-----VTEEY-DLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRS-GGSEYQWLMKHTAVSN 469 (505)
Q Consensus 397 lV~NKiDl~~~~~~-----~~~~~-~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~-~~~~~~~l~~~~~v~~ 469 (505)
+|+||+|+...... ....+ ++++||++|.|+++|+++|.+.+... .....+.+|+ .+...++++..+.|..
T Consensus 314 iV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~--~~~~~~~~p~~~~~~~~~~~~~~~v~~ 391 (426)
T PRK11058 314 LVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSGE--VAQHTLRLPPQEGRLRSRFYQLQAIEK 391 (426)
T ss_pred EEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhc--cEEEEEEEChhhhhHHHHHHhcCceeE
Confidence 99999999753210 01123 58999999999999999999998543 4567899995 5778899999999988
Q ss_pred eeecCCCCeEEEEEEEecHHHHHHHHHHhcc
Q psy50 470 IREDDTSAEHLLLDVVMTDVIMNKFKHEFIS 500 (505)
Q Consensus 470 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~ 500 (505)
. .|.++|.. .+++.+++..+.+|.++.|.
T Consensus 392 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 420 (426)
T PRK11058 392 E-WMEEDGSV-SLQVRMPIVDWRRLCKQEPA 420 (426)
T ss_pred E-EEcCCCEE-EEEEEECHHHHHHHHHHHHH
Confidence 7 77777743 46899999999999998765
No 3
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=3.3e-71 Score=572.83 Aligned_cols=338 Identities=33% Similarity=0.471 Sum_probs=299.6
Q ss_pred eEEEEEeeeecCccccCCCChhchHHHHHHHHHhcCCCeeEEEEEEeccCCCCcceeccchHHHHHHHHhccCCeeEEEE
Q psy50 87 QVFVVQPFIKWGKKMKRNTTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFV 166 (505)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~E~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~v~~ 166 (505)
||+||+... ... ...+++|+|+.+||+|+| |+||++++|++++|||+||||+||++||++.++. .++++|||
T Consensus 1 ~~~~~~~~~--~~~----~~~~~~~~E~~~L~~~~~-~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~-~~~~~vi~ 72 (351)
T TIGR03156 1 RAILVGVDL--PEE----DDEEESLEELAELAETAG-AEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEE-LEADLVIF 72 (351)
T ss_pred CEEEEEEec--CCC----cchhhhHHHHHHHHHHCC-CEEEEEEEEecCCCCCCeEecccHHHHHHHHHHh-cCCCEEEE
Confidence 588888543 211 134578999999999995 7999999999999999999999999999999986 58999998
Q ss_pred eCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc------c-cc-CcCCCCCCc
Q psy50 167 SVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI------E-DA-TNMNITKGF 238 (505)
Q Consensus 167 ~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~~------~-~g-~~~g~ge~~ 238 (505)
| ++|||+|.+|||+.||++|+|||+|||+||++||+|+|||||+|||+|+|.+||+.+. + || |++||||+.
T Consensus 73 ~-~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~ 151 (351)
T TIGR03156 73 D-HELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQ 151 (351)
T ss_pred C-CCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhH
Confidence 7 7999999999999999999999999999999999999999999999999999999873 2 34 788999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec
Q psy50 239 LDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE 318 (505)
Q Consensus 239 ~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~ 318 (505)
++.+++.++++|..++++|+++.++|...|..|.+.+.++|+|+|+||||||||+|+|++.. ..+.+++|+|+|++.+.
T Consensus 152 ~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~ 230 (351)
T TIGR03156 152 LETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRR 230 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEE
Confidence 99999999999999999999999999999988888888999999999999999999999987 56789999999999888
Q ss_pred cccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEE
Q psy50 319 GMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 319 ~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..++++.++.++|||||+.++|+++++.|+++++++..||++++|+|++++...++...+..+++.++..+ +|+++|
T Consensus 231 i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~---~piIlV 307 (351)
T TIGR03156 231 LDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAED---IPQLLV 307 (351)
T ss_pred EEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCC---CCEEEE
Confidence 87777889999999999988898999999999999999999999999999987776777778888876533 599999
Q ss_pred EeCCCCCCCCCCC----CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 399 GNKVDAVPPGERV----TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 399 ~NKiDl~~~~~~~----~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
+||+|+....... ...+++++||++|.|+++|++.|.+.
T Consensus 308 ~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 308 YNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 9999997543211 12468999999999999999999764
No 4
>KOG0410|consensus
Probab=100.00 E-value=4e-69 Score=528.95 Aligned_cols=394 Identities=32% Similarity=0.481 Sum_probs=358.2
Q ss_pred ChhchHHHHHHHHHhcCCCeeEEEEEEeccCCCCcceeccchHHHHHHHHhccCCeeEEEEeCCCCCHHHHHHHHHhcCC
Q psy50 106 TRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQV 185 (505)
Q Consensus 106 ~~~~~l~E~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~v~~~~~~Ltp~Q~~nle~~~~~ 185 (505)
++|++++|+.+|+.|+++|.|+.++..+.. +++++|||+||+++|+..+... .++++|.|.+.+.|.|..+++..|+|
T Consensus 3 ~ae~qleea~aLvdtl~~~nvv~t~~kpv~-~~rk~~~gsGn~e~Li~~i~aa-~at~~f~nv~a~~a~~~~ek~r~~~V 80 (410)
T KOG0410|consen 3 NAEVQLEEANALVDTLQQRNVVRTWAKPVL-DNRKTYIGSGNVEELIIEIFAA-HATTKFANVQAELAALMYEKSRLVRV 80 (410)
T ss_pred hHHHHHHHHHHHHHhhccchhhhheeeecc-CCcceeeecCcHHHHHHHHhcC-ccceeeecccccchhHHHHHhhhcce
Confidence 578999999999999999999999877655 5999999999999999999874 59999999999999999999999999
Q ss_pred ceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc------ccc-CcCCCCCCcchhhH-HHHHHHHHHHHHHH
Q psy50 186 PVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI------EDA-TNMNITKGFLDSKR-MVLMEREQKLKKAL 257 (505)
Q Consensus 186 ~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~~------~~g-~~~g~ge~~~e~~r-r~l~~ri~~l~~eL 257 (505)
+|+||+.+||+||.++|+|+||++|+++|+++|.++||.+. +.| ..+|.||.+++.|. +.++.++++++++|
T Consensus 81 rvfDr~~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~d~~rllr~kea~lrKeL 160 (410)
T KOG0410|consen 81 RVFDRRHTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDRDIRRLLRIKEAQLRKEL 160 (410)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864 223 47899999999998 88899999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 258 NKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 258 ~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
+.+.++| ..|.++.....|.|++|||||||||||+|+|++.. ..+.|++|+|+|+|.+...+|++..++|.||+||++
T Consensus 161 ~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 161 QRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred HHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccCCCCcEEEEeechhhhh
Confidence 9999999 66788888899999999999999999999999765 779999999999999999999999999999999999
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc-ccCccEEEEEeCCCCCCCCCCCCCCCe
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE-KILEHVLVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~-~~~~p~IlV~NKiDl~~~~~~~~~~~~ 416 (505)
++|..++++|.+|++++.+||+++||+|+|+|..+.|.+.++.+|+.+|+++ .....++-|.||+|.............
T Consensus 239 dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~ 318 (410)
T KOG0410|consen 239 DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLD 318 (410)
T ss_pred hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCc
Confidence 9999999999999999999999999999999999999999999999999853 334468899999998765432223347
Q ss_pred EEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHH
Q psy50 417 LLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKH 496 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 496 (505)
+++||++|.|++++++.+...+...+......+.+...++...|+|.++.|..+..++++|..+.+.++++.+.+.+|++
T Consensus 319 v~isaltgdgl~el~~a~~~kv~~~t~~~e~~Lr~d~gd~~~~wly~e~~vvk~~~i~eng~~l~~~vi~~~SelgKfrk 398 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVASETTVDEDQLRNDDGDDADGWLYSEDEVVKVDAINENGKKLKSPVIVERSELGKFRK 398 (410)
T ss_pred cccccccCccHHHHHHHHHHHhhhhheeeeEEeecCCCccchhheeecceEEEeeccCCCCceEecceeecHHhhcchhh
Confidence 99999999999999999999998888877777777778899999999999988889999998788899999999999999
Q ss_pred Hhccccc
Q psy50 497 EFISSRK 503 (505)
Q Consensus 497 ~~p~~~~ 503 (505)
.||..+.
T Consensus 399 ~f~~~~~ 405 (410)
T KOG0410|consen 399 RFPRNDD 405 (410)
T ss_pred hCCCCcc
Confidence 9998654
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=4.3e-30 Score=253.60 Aligned_cols=195 Identities=24% Similarity=0.307 Sum_probs=162.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~ 353 (505)
.+..|||||.||||||||+|+|.|.+...+++++.||+.. ++.....+..+++|+|||||... .+.+.+.+ +.+...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~-I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh-eeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHH
Confidence 4678999999999999999999999988899999999864 34444556899999999999873 23344444 446777
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------CCCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------VTEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~~~~~~v~iSA~ 422 (505)
+.++|+++||+|+.++... .++.+.+.|+... .|+++++||+|....... ..+..++|+||+
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~~~------~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKKTK------TPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhhcC------CCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecc
Confidence 8889999999999986554 3566677776522 499999999999887662 126689999999
Q ss_pred CcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 423 RGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
+|.|++.|.+.+.+++ +..+|+|+++.++|. +++|++.++|||+++..+++|+||+
T Consensus 156 ~g~n~~~L~~~i~~~L-----------------peg~~~yp~d~itD~------~~rf~~aEiiREk~~~~l~eElPhs 211 (298)
T COG1159 156 KGDNVDTLLEIIKEYL-----------------PEGPWYYPEDQITDR------PERFLAAEIIREKLLLLLREELPHS 211 (298)
T ss_pred ccCCHHHHHHHHHHhC-----------------CCCCCcCChhhccCC------hHHHHHHHHHHHHHHHhcccccCce
Confidence 9999999999999998 677899999999986 7788899999999999999999996
No 6
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.96 E-value=2.5e-29 Score=210.76 Aligned_cols=92 Identities=24% Similarity=0.357 Sum_probs=87.1
Q ss_pred CChhchHHHHHHHHHhcCCCeeEEEEEEeccCCCCcceeccchHHHHHHHHhccCCeeEEEEeCCCCCHHHHHHHHHhcC
Q psy50 105 TTRDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQ 184 (505)
Q Consensus 105 ~~~~~~l~E~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~v~~~~~~Ltp~Q~~nle~~~~ 184 (505)
.+.+++|+|+++||+|+| |+|+++++|++++|||+||||+||++||++.++. .++++|+|| ++|||+|+||||+.||
T Consensus 4 ~~~~~~l~El~~L~~t~g-~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~-~~~d~vvfd-~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 4 YDFEESLEELEELAETAG-YEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEE-LDADLVVFD-NELSPSQQRNLEKALG 80 (95)
T ss_pred ccHHHHHHHHHHHHHHCC-CeEEEEEEecCCCCCcceeechhHHHHHHHHHhh-cCCCEEEEC-CCCCHHHHHHHHHHHC
Confidence 467889999999999995 7999999999999999999999999999999986 589999997 7999999999999999
Q ss_pred CceeehhhHHHHHHH
Q psy50 185 VPVFDRYMIVIQIFK 199 (505)
Q Consensus 185 ~~V~DR~~lil~If~ 199 (505)
++|+||++|||+|||
T Consensus 81 ~~V~DRt~LIL~IFA 95 (95)
T PF13167_consen 81 VKVIDRTQLILEIFA 95 (95)
T ss_pred CeeeccccHHHHHcC
Confidence 999999999999997
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.95 E-value=2.3e-27 Score=253.64 Aligned_cols=243 Identities=22% Similarity=0.271 Sum_probs=190.5
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc--------ccc-C-cCC
Q psy50 164 VFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI--------EDA-T-NMN 233 (505)
Q Consensus 164 v~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~~--------~~g-~-~~g 233 (505)
.|.| +.|.-.|...+.+. | +|+|..+ +|+++++|.+..+++... .+. + .++
T Consensus 114 Afln-gk~dL~qaEai~~l-----------i------~a~t~~~-~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iD 174 (449)
T PRK05291 114 AFLN-GKLDLTQAEAIADL-----------I------DAKTEAA-ARLALRQLQGALSKLINELREELLELLALVEAAID 174 (449)
T ss_pred HHhc-CCcCHHHHHHHHHH-----------H------hCCCHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEcc
Confidence 3667 78999999988664 3 7999998 999999999977765543 233 2 455
Q ss_pred -CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee
Q psy50 234 -ITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312 (505)
Q Consensus 234 -~ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl 312 (505)
|+|+..+.+++.+++++..++++|+++.+.+... +..+.+.+|+++|+||||||||+|+|++.....+.+++++|.
T Consensus 175 f~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~---~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~ 251 (449)
T PRK05291 175 FPEEDIEFLSDEKILEKLEELIAELEALLASARQG---EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTR 251 (449)
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccc
Confidence 8888889999999999999999999999888533 333466899999999999999999999987656788999998
Q ss_pred eeeeeccccCCcceEEEEeeeeeeecCCCCCcch--hhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccc
Q psy50 313 DVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEP--FKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK 390 (505)
Q Consensus 313 d~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~--f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~ 390 (505)
|+......+ ++.++.++||||+.. +.+.++. +..+++.+..||++++|+|++++...+.... +.. .
T Consensus 252 d~~~~~i~~-~g~~i~l~DT~G~~~--~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~----l~~--~--- 319 (449)
T PRK05291 252 DVIEEHINL-DGIPLRLIDTAGIRE--TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEI----LEE--L--- 319 (449)
T ss_pred ccEEEEEEE-CCeEEEEEeCCCCCC--CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHH----HHh--c---
Confidence 876655444 567899999999864 5555655 4668888999999999999998876543322 222 1
Q ss_pred cCccEEEEEeCCCCCCCCCCC--CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 391 ILEHVLVVGNKVDAVPPGERV--TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 391 ~~~p~IlV~NKiDl~~~~~~~--~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
...|+++|+||+|+....... ...+++++||++|.|+++|+++|.+.+..
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 135999999999997643321 13578999999999999999999998753
No 8
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=2.3e-27 Score=227.06 Aligned_cols=198 Identities=42% Similarity=0.673 Sum_probs=162.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee
Q psy50 236 KGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315 (505)
Q Consensus 236 e~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t 315 (505)
|+++|.|++.+++++..++++|+.+.+.|...+..+..++.++|+|+|++|||||||+|+|++.. ....+.+++|.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~ 79 (204)
T cd01878 1 ETQLETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPT 79 (204)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccce
Confidence 68899999999999999999999999999888888777888999999999999999999999976 34566677787776
Q ss_pred eeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE
Q psy50 316 THEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395 (505)
Q Consensus 316 ~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~ 395 (505)
......++...+.++||||+....+....+.+..++..+..+|++++|+|++++........+.+.+..++..+ .|+
T Consensus 80 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~---~~v 156 (204)
T cd01878 80 TRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED---IPM 156 (204)
T ss_pred eEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC---CCE
Confidence 65555555558999999999776555555666666777888999999999998877666666777777765433 599
Q ss_pred EEEEeCCCCCCCCCC-----CCCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 396 LVVGNKVDAVPPGER-----VTEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 396 IlV~NKiDl~~~~~~-----~~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
++|+||+|+...... ....+++++||++|.|+++++++|.+.
T Consensus 157 iiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 157 ILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 999999999765421 124579999999999999999998765
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=7.9e-28 Score=241.19 Aligned_cols=192 Identities=21% Similarity=0.214 Sum_probs=147.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~ 355 (505)
.+|+++|+||||||||+|+|++.....+.+++.+|.+.. ......++.++.|+||||+... .+.+.+.+ +.+...+.
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIG 78 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHh
Confidence 369999999999999999999987666778888887643 2233345678999999998753 12222323 23556678
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC----------CCCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER----------VTEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~----------~~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.... ..+...+...+ .|+++|+||+|+...... ..+.+++++||++|.
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~~------~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNLK------RPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhcC------CCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 899999999999875543 44555555433 499999999999743321 113478999999999
Q ss_pred cHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 426 GLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
|+++|++.|.+.+ +..+|+|+.+.+++. +..++++++||+++|.++.+|+||+
T Consensus 151 gi~~L~~~l~~~l-----------------~~~~~~~~~~~~t~~------~~~~~~~e~ire~~~~~~~~e~p~~ 203 (270)
T TIGR00436 151 NTSFLAAFIEVHL-----------------PEGPFRYPEDYVTDQ------PDRFKISEIIREKIIRYTKEEIPHS 203 (270)
T ss_pred CHHHHHHHHHHhC-----------------CCCCCCCCCcccCCC------CHHHHHHHHHHHHHHHhcccccCce
Confidence 9999999999887 556789999999885 5566789999999999999999996
No 10
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.94 E-value=6.7e-26 Score=235.60 Aligned_cols=245 Identities=25% Similarity=0.307 Sum_probs=193.2
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhc--------cccc--CcCC
Q psy50 164 VFVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRT--------IEDA--TNMN 233 (505)
Q Consensus 164 v~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~--------~~~g--~~~g 233 (505)
.|.| +.+...|...+.+ || +|+|..| .++++.++....+++.. ..+- ..++
T Consensus 116 AFLN-gK~DLtqAEai~d-----------LI------~A~te~a-~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~ID 176 (454)
T COG0486 116 AFLN-GKLDLTQAEAIAD-----------LI------DAKTEQA-ARIALRQLQGALSQLINELREALLELLAQVEANID 176 (454)
T ss_pred HHhc-CCccHHHHHHHHH-----------HH------hCCCHHH-HHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeCC
Confidence 3677 7899999999866 44 6899988 78888888766554443 2333 3788
Q ss_pred -CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee
Q psy50 234 -ITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312 (505)
Q Consensus 234 -~ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl 312 (505)
|.|+..+.....+..++..++.+|+++.... +++...+++.+|+|+|.||||||||+|+|++.+.+.+.|++.||+
T Consensus 177 fpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~---~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR 253 (454)
T COG0486 177 FPEEDIEELVLEKIREKLEELIAELDELLATA---KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR 253 (454)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCcc
Confidence 7776777777888889999999998887666 566667789999999999999999999999999999999999999
Q ss_pred eeeeeccccCCcceEEEEeeeeeeecCCCCCcchh--hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccc
Q psy50 313 DVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF--KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK 390 (505)
Q Consensus 313 d~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~ 390 (505)
|+-.....+ +|.++.++||+|+++ ..+.+|.. .++++.+..||++++|+|++.+...... .+.. .+ .
T Consensus 254 Dviee~i~i-~G~pv~l~DTAGiRe--t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~----~ 322 (454)
T COG0486 254 DVIEEDINL-NGIPVRLVDTAGIRE--TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LL----P 322 (454)
T ss_pred ceEEEEEEE-CCEEEEEEecCCccc--CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hc----c
Confidence 986554443 689999999999986 45778765 7789999999999999999987443322 2222 11 1
Q ss_pred cCccEEEEEeCCCCCCCCCCC-----CCCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 391 ILEHVLVVGNKVDAVPPGERV-----TEEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 391 ~~~p~IlV~NKiDl~~~~~~~-----~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
..+|+++|+||+||....... ...+++.+||++|+|++.|.+.|.+.+...
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 235999999999998765422 234689999999999999999999998643
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=1.1e-25 Score=232.73 Aligned_cols=195 Identities=16% Similarity=0.226 Sum_probs=146.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~ 353 (505)
...+|+++|.||||||||+|+|++.....+.+.+.+|.+....... .++.++.||||||+.... ..+...+ +.++..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~-~~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT-LKDTQVILYDTPGIFEPK-GSLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE-eCCeEEEEEECCCcCCCc-ccHHHHHHHHHHHH
Confidence 3468999999999999999999998755556666777654332222 346789999999986421 1233333 445566
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------CCCCCeEEEeccCc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------VTEEYDLLISATRG 424 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~~~~~~v~iSA~~g 424 (505)
+..||++++|+|.++..... ...+.+.++..+ .|.++|+||+|+...... ..+..++++||++|
T Consensus 129 l~~aDvil~VvD~~~s~~~~-~~~il~~l~~~~------~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg 201 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDI-THNILDKLRSLN------IVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSG 201 (339)
T ss_pred hhhCCEEEEEEECCCCCCHH-HHHHHHHHHhcC------CCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 88899999999987654322 334555555443 377899999998643210 01346899999999
Q ss_pred ccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 425 TGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
.|+++|+++|.+.+ +..+|+|+++.+++. +..+++.++||+++|..+.+|+||+
T Consensus 202 ~gv~eL~~~L~~~l-----------------~~~~~~~~~~~~td~------~~~~~~~eiiRe~~~~~~~~EiP~~ 255 (339)
T PRK15494 202 KNIDGLLEYITSKA-----------------KISPWLYAEDDITDL------PMRFIAAEITREQLFLNLQKELPYK 255 (339)
T ss_pred cCHHHHHHHHHHhC-----------------CCCCCCCCCCCCCCC------CHHHHHHHHHHHHHHhhCCcccCce
Confidence 99999999999887 667899999999986 6677889999999999999999996
No 12
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=1.2e-24 Score=220.13 Aligned_cols=195 Identities=22% Similarity=0.252 Sum_probs=143.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~ 353 (505)
+...|+|+|.||||||||+|+|+|.....+.+.+.+|.+... .....++.++.|+||||+.... ..+.+.+ ..+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTEDDAQIIFVDTPGIHKPK-RALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEEEcCCceEEEEECCCCCCch-hHHHHHHHHHHHHH
Confidence 456899999999999999999999875555666666554322 1222345789999999986422 1222222 334566
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC-CCC----------CCCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP-GER----------VTEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~-~~~----------~~~~~~v~iSA~ 422 (505)
+..+|++++|+|++++.... ...+.+.+... ..|+++|+||+|+... ... ..+.+++++||+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~-~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPG-DEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred HhcCCEEEEEEeCCCCCChh-HHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 78899999999998844332 34444555432 2499999999999843 211 124679999999
Q ss_pred CcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 423 RGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
+|.|+++|++.|.+.+ +..+|+|+.+.+++. +.++++.++||++++.+|.+|+||+
T Consensus 155 ~~~gv~~L~~~L~~~l-----------------~~~~~~y~~~~~td~------~~r~~~~EiiRe~~~~~l~~e~p~~ 210 (292)
T PRK00089 155 KGDNVDELLDVIAKYL-----------------PEGPPYYPEDQITDR------PERFLAAEIIREKLLRLLGDELPYS 210 (292)
T ss_pred CCCCHHHHHHHHHHhC-----------------CCCCCCCCCCCCCCC------CHHHHHHHHHHHHHHhhCCccCCce
Confidence 9999999999999887 445689999988875 5566789999999999999999996
No 13
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.8e-23 Score=217.99 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=139.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCC--CcchhhhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT--LLEPFKVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~--lie~f~~tle~ 353 (505)
...|+|||+||||||||||+|++.. +.+++++|+|+.+........+...++|+||||++...... +. ...+++
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg---~~~l~~ 234 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLG---IRFLKH 234 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHH---HHHHHH
Confidence 4579999999999999999999986 57899999999887766555555679999999998632211 22 234667
Q ss_pred HHhhceeEEEeeCC---CCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CC-CCeEEE
Q psy50 354 AMLADIIIHVVDVS---NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TE-EYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s---~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~-~~~v~i 419 (505)
+..+|++++|+|++ .....++...+.+.+..+.. ....+|+++|+||+|+....... .. .+++++
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEE
Confidence 88899999999998 33333444556665655421 11236999999999987543211 11 368999
Q ss_pred eccCcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHH
Q psy50 420 SATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIM 491 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~ 491 (505)
||+++.|+++|++.|.+.+. ..+|+|++..+++. +..+++.++|||++.
T Consensus 314 SA~tg~GIdeLl~~I~~~L~-----------------~~~~~~~~~~~td~------~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIE-----------------ENPREEAEEAEAPE------KVEFMWDDYHREQLE 362 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhh-----------------hCcccCCcccccCc------cHHHHHHHHHHHHhh
Confidence 99999999999999999873 34678998888875 445667888888874
No 14
>KOG1423|consensus
Probab=99.87 E-value=3.5e-23 Score=203.61 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=148.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC---CCcchh-hhh
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT---TLLEPF-KVT 350 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~---~lie~f-~~t 350 (505)
....||+||.||||||||.|.+.|.....+..+.-||..-. -.+...+..+++|+||||++.+..+ .+.-++ ...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i-lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI-LGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee-eEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46789999999999999999999998776777766665322 2233456789999999999875321 111122 235
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------------
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------------------- 411 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------------- 411 (505)
+..+..||+++.|+|++++...- --.++..|+.+. ..|-++|+||+|........
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 66788899999999999743322 234666676653 24899999999986543210
Q ss_pred -------C-------------CCCeEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEee
Q psy50 412 -------T-------------EEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIR 471 (505)
Q Consensus 412 -------~-------------~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~ 471 (505)
+ +..+|++||++|.|+++|.++|.... +..+|-|+.+.++++
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa-----------------~~gpW~y~a~i~T~~- 285 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA-----------------PPGPWKYPADIVTEE- 285 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC-----------------CCCCCCCCccccccc-
Confidence 0 34589999999999999999998776 778999999999885
Q ss_pred ecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 472 EDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 472 ~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
...+++.++||+++++.+.+|+||.
T Consensus 286 -----s~e~l~~e~VReklLd~~pqEVPY~ 310 (379)
T KOG1423|consen 286 -----SPEFLCSESVREKLLDHLPQEVPYN 310 (379)
T ss_pred -----CHHHHHHHHHHHHHHhhCccccCcc
Confidence 2234578999999999999999994
No 15
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=6.3e-21 Score=203.38 Aligned_cols=238 Identities=20% Similarity=0.206 Sum_probs=170.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHh--------hhhccccc--CcCC-
Q psy50 165 FVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWT--------RYRTIEDA--TNMN- 233 (505)
Q Consensus 165 ~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~--------rl~~~~~g--~~~g- 233 (505)
|.| +.+.-.|...+.+ || +|+|..+ .+.+++++....+ +|....+- ..++
T Consensus 107 flN-Gk~DL~qaEav~d-----------lI------~a~t~~~-~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf 167 (442)
T TIGR00450 107 FLN-GKMDLTQAEAINE-----------LI------LAPNNKV-KDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDY 167 (442)
T ss_pred Hhc-CCccHHHHHHHHH-----------HH------hCCCHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCc
Confidence 667 7899999988866 34 7999998 7888887766544 33333333 3677
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 234 ITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 234 ~ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
|.|+ .+. ..+..++..+..+|+++.... . + +..+.+.+|+++|+||||||||+|+|++.....+.+++++|.+
T Consensus 168 ~ee~-~~~--~~~~~~l~~~~~~l~~ll~~~-~-~--~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd 240 (442)
T TIGR00450 168 EEDD-DEQ--DSLNQLLLSIIAELKDILNSY-K-L--EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRD 240 (442)
T ss_pred CCCC-ccH--HHHHHHHHHHHHHHHHHHHHH-H-H--HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEE
Confidence 4444 222 377788888888888887666 1 1 3345778999999999999999999999876677888999988
Q ss_pred eeeeccccCCcceEEEEeeeeeeecCCCCCcchh--hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccccc
Q psy50 314 VTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF--KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391 (505)
Q Consensus 314 ~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~ 391 (505)
+......+ ++.++.++||||+.. ..+.++.+ ..+...+..+|++++|+|++++.+.+.. +...+...
T Consensus 241 ~~~~~i~~-~g~~v~l~DTaG~~~--~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------ 309 (442)
T TIGR00450 241 VVEGDFEL-NGILIKLLDTAGIRE--HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------ 309 (442)
T ss_pred EEEEEEEE-CCEEEEEeeCCCccc--chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------
Confidence 75544443 467889999999864 22334433 3466778899999999999987654432 33322211
Q ss_pred CccEEEEEeCCCCCCCCCC--CC--CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 392 LEHVLVVGNKVDAVPPGER--VT--EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 392 ~~p~IlV~NKiDl~~~~~~--~~--~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.+|+++|+||+|+...... .. ..+++++||++ .|++++++.|.+.+.+
T Consensus 310 ~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 310 KKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred CCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 2599999999998654210 01 24678999998 5899999988888754
No 16
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.8e-21 Score=200.53 Aligned_cols=162 Identities=22% Similarity=0.280 Sum_probs=126.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~ 353 (505)
-...|+|||+||||||||||+|++.. +.+.+++|+|+++....+...+...+.++||||++..... ...+ ...+++
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~flrh 233 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHRFLKH 233 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHHHHHH
Confidence 45789999999999999999999976 5688999999998877665556678999999999864321 1122 345777
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|+++||+|++++...+..+.|.+.|..+.. ....+|+++|+||+|+....... ...+++++||++
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAkt 312 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP-ELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVT 312 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-hcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 8889999999999987656666667776765531 12346999999999997544211 025789999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
++|+++|+++|.+.+.+
T Consensus 313 g~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 313 GEGLDELLRALWELLEE 329 (335)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998854
No 17
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=9.9e-22 Score=180.69 Aligned_cols=145 Identities=28% Similarity=0.258 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH--
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA-- 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i-- 354 (505)
.+||++|.||||||||||+|+|.. ..+++++.+|.+........ ++..+.++||||+.+-.+...-|.. +.+.+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERV--ARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHH--HHHHHhh
Confidence 369999999999999999999998 66899999999876554443 4589999999998763332222332 33333
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEeccCcc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISATRGT 425 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~~g~ 425 (505)
...|++++|+|+++.. ....+...+.++|. |+++|+||+|+........ ..|++++||++++
T Consensus 77 ~~~D~ii~VvDa~~l~---r~l~l~~ql~e~g~------P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLE---RNLYLTLQLLELGI------PVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGE 147 (156)
T ss_dssp TSSSEEEEEEEGGGHH---HHHHHHHHHHHTTS------SEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred cCCCEEEEECCCCCHH---HHHHHHHHHHHcCC------CEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCc
Confidence 5799999999998642 22344555666663 9999999999876544211 6789999999999
Q ss_pred cHHHHHHHH
Q psy50 426 GLAQLKEKV 434 (505)
Q Consensus 426 gi~eL~~~I 434 (505)
|+++|++.|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999876
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=2.7e-21 Score=200.84 Aligned_cols=154 Identities=26% Similarity=0.294 Sum_probs=126.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~ 355 (505)
+.|||||.||+|||||+|+|++...+.+.|++..|.|.....+.+. +..+.++||+|+....+..+.+.+ ..++..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998899999999999876666654 556999999998754433444444 45888899
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccHHH
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi~e 429 (505)
+||++|+|+|+....+.. ++.+.++|...+ +|+++|+||+|-....... -+.++++|||.+|.|+.+
T Consensus 83 eADvilfvVD~~~Git~~-D~~ia~~Lr~~~------kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~d 155 (444)
T COG1160 83 EADVILFVVDGREGITPA-DEEIAKILRRSK------KPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGD 155 (444)
T ss_pred hCCEEEEEEeCCCCCCHH-HHHHHHHHHhcC------CCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHH
Confidence 999999999998876554 667788887543 5999999999987443321 156799999999999999
Q ss_pred HHHHHHHHH
Q psy50 430 LKEKVQDMI 438 (505)
Q Consensus 430 L~~~I~~~l 438 (505)
|++.+.+.+
T Consensus 156 Lld~v~~~l 164 (444)
T COG1160 156 LLDAVLELL 164 (444)
T ss_pred HHHHHHhhc
Confidence 999999997
No 19
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.2e-20 Score=199.51 Aligned_cols=162 Identities=23% Similarity=0.305 Sum_probs=121.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i 354 (505)
...|+|||+||||||||||+|++.. +.+++++|+|+.++...+...++..+.++||||++..... ...+ ...+.++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhi 234 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHI 234 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHH
Confidence 4589999999999999999999986 5678999999998776655555778999999999863221 1112 3356777
Q ss_pred HhhceeEEEeeCCCC---ChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcc
Q psy50 355 MLADIIIHVVDVSNP---DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGT 425 (505)
Q Consensus 355 ~~ADliL~VvD~s~~---~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~ 425 (505)
..+|+++||+|+++. ...+....+.+.|..+.. ....+|+++|+||+|+....... ...+++++||++++
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 889999999999864 334445566666666531 22346999999999984332110 02578999999999
Q ss_pred cHHHHHHHHHHHHhhh
Q psy50 426 GLAQLKEKVQDMILKA 441 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~ 441 (505)
|+++|+++|.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999988653
No 20
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=186.40 Aligned_cols=196 Identities=25% Similarity=0.291 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee
Q psy50 240 DSKRMVLMEREQKLKKALNKLKGQREM--MRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH 317 (505)
Q Consensus 240 e~~rr~l~~ri~~l~~eL~~l~~~r~~--~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~ 317 (505)
|--.-.++.+++++++||+.-++.... ....-.+.+..+|++||+||+|||||||+|++.. ..+++++|||+.+...
T Consensus 25 e~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG 103 (365)
T COG1163 25 EHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPG 103 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccc
Confidence 334567888899999988875211100 1122345677899999999999999999999997 5689999999976433
Q ss_pred ccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHH-H----------------------
Q psy50 318 EGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQ-Q---------------------- 374 (505)
Q Consensus 318 ~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~-~---------------------- 374 (505)
+.-.++.+++++|+||++...+.+.-.. +..+..++.||++++|+|+..+...- .
T Consensus 104 -~l~Y~ga~IQild~Pgii~gas~g~grG-~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~ 181 (365)
T COG1163 104 -MLEYKGAQIQLLDLPGIIEGASSGRGRG-RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIK 181 (365)
T ss_pred -eEeecCceEEEEcCcccccCcccCCCCc-ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEE
Confidence 3334789999999999998655333211 33556678899999999998654310 0
Q ss_pred -------------------HHHHHHHHHhcCccc---------------------ccCccEEEEEeCCCCCCCCCCC---
Q psy50 375 -------------------KQHVDETLQHLELEE---------------------KILEHVLVVGNKVDAVPPGERV--- 411 (505)
Q Consensus 375 -------------------~~~v~~~L~~lg~~~---------------------~~~~p~IlV~NKiDl~~~~~~~--- 411 (505)
...+..+|+++++.+ ..++|+++|+||+|+...++..
T Consensus 182 kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~ 261 (365)
T COG1163 182 KKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLA 261 (365)
T ss_pred EeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHH
Confidence 223334444444322 2367899999999998854421
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
...+.+++||..+.|+++|++.|.+.+
T Consensus 262 ~~~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 262 RKPNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred hccceEEEecccCCCHHHHHHHHHHhh
Confidence 245899999999999999999999998
No 21
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=3e-20 Score=171.38 Aligned_cols=157 Identities=24% Similarity=0.273 Sum_probs=112.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
.|+++|++|||||||+|+|++.. ..+++.+++|.+++.......+...+.++||||+..... ...+....++..+..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS-EGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccc-ccCCchHHHHHHHHhC
Confidence 48999999999999999999875 356667777776655444333334899999999854221 1111123345566779
Q ss_pred ceeEEEeeCCCC-ChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 358 DIIIHVVDVSNP-DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 358 DliL~VvD~s~~-~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
|++++|+|++++ ........+.+.+..... ....+|+++|+||+|+....... ...+++++||+++.|
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 999999999988 565555666666655431 12246999999999987654321 135789999999999
Q ss_pred HHHHHHHHHHH
Q psy50 427 LAQLKEKVQDM 437 (505)
Q Consensus 427 i~eL~~~I~~~ 437 (505)
+++++++|.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 22
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.83 E-value=3.2e-20 Score=191.04 Aligned_cols=161 Identities=22% Similarity=0.258 Sum_probs=120.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
-...|+|||+||||||||+|+|++.. +.+.+++|+|+.++.......+..++.++||||++...... ..--...++++
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~-~gLg~~flrhi 233 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG-AGLGHRFLKHI 233 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc-ccHHHHHHHHH
Confidence 45789999999999999999999876 56889999999988776655555889999999997643211 11113356777
Q ss_pred HhhceeEEEeeCCCC---ChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEecc
Q psy50 355 MLADIIIHVVDVSNP---DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISAT 422 (505)
Q Consensus 355 ~~ADliL~VvD~s~~---~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~ 422 (505)
..+|++++|+|+++. ...++...+.+.|..+.. ....+|+++|+||+|+....... ...+++++||+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAk 312 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISAL 312 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 889999999999976 344455556666655431 12346999999999997653210 03479999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQDMI 438 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l 438 (505)
+++|+++|+++|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 23
>KOG1489|consensus
Probab=99.82 E-value=4.1e-20 Score=183.09 Aligned_cols=160 Identities=24% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle 352 (505)
+....|++||.||||||||||+|+... +.+++|.|||+.+.+..+...+..++.+.|.||+|+... +...+ ...++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nkGlG~~FLr 270 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNKGLGYKFLR 270 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCcccccccc--ccCcccHHHHH
Confidence 345789999999999999999999997 679999999999988877677777899999999998542 22222 34688
Q ss_pred HHHhhceeEEEeeCCCC---ChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEec
Q psy50 353 DAMLADIIIHVVDVSNP---DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISA 421 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~---~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA 421 (505)
++..|+.+++|+|++.+ ....+.+.+...|+.++- ...++|.++|+||+|+....... ....++++||
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek-~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK-GLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh-hhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeee
Confidence 99999999999999988 555566666666665532 22346999999999996433211 1345999999
Q ss_pred cCcccHHHHHHHHHHH
Q psy50 422 TRGTGLAQLKEKVQDM 437 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~ 437 (505)
++++|+.+|++.|...
T Consensus 350 ~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 350 KSGEGLEELLNGLREL 365 (366)
T ss_pred ccccchHHHHHHHhhc
Confidence 9999999999988653
No 24
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=6.5e-20 Score=196.35 Aligned_cols=163 Identities=23% Similarity=0.233 Sum_probs=119.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~ 353 (505)
-...|+|||+||||||||||+|++.. +.+.+++|+|+++....+.. .+.++.++||||++.... ....+ ...+.+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas--~g~gLg~~fLrh 233 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGAS--EGKGLGLDFLRH 233 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE-CCeEEEEEECCCCccccc--hhhHHHHHHHHH
Confidence 45789999999999999999999986 56789999999887665444 356899999999985321 11122 235677
Q ss_pred HHhhceeEEEeeCCCC----ChHHHHHHHHHHHHhcCc--------ccccCccEEEEEeCCCCCCCCCCC---------C
Q psy50 354 AMLADIIIHVVDVSNP----DYLQQKQHVDETLQHLEL--------EEKILEHVLVVGNKVDAVPPGERV---------T 412 (505)
Q Consensus 354 i~~ADliL~VvD~s~~----~~~~~~~~v~~~L~~lg~--------~~~~~~p~IlV~NKiDl~~~~~~~---------~ 412 (505)
+..+|+++||+|+++. +...+...+.+.|..+.. .....+|+|+|+||+|+....+.. .
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~ 313 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR 313 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc
Confidence 8889999999999853 222334444444544321 022346999999999986543211 1
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
..++++|||+++.|+++|+.+|.+.+...
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35799999999999999999999988653
No 25
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=6e-19 Score=162.53 Aligned_cols=155 Identities=23% Similarity=0.281 Sum_probs=103.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH-
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA- 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i- 354 (505)
|+|+++|++|||||||+|+|++.. ....+..++|.++....... .+..+.+|||||+... +......+ ..+...+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDR-PLEERNTIEMQAITALA 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCc-cccCCchHHHHHHHHHH
Confidence 579999999999999999999986 33455667776655433222 4578999999997531 11111111 1122222
Q ss_pred HhhceeEEEeeCCCCChH--HHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYL--QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~--~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++... +....+...+.... ...|+++|+||+|+....... ...+++++||++|
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF----KNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTE 153 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc----CcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEeccc
Confidence 236899999999876532 22223444443321 135999999999997644321 1457899999999
Q ss_pred ccHHHHHHHHHHHH
Q psy50 425 TGLAQLKEKVQDMI 438 (505)
Q Consensus 425 ~gi~eL~~~I~~~l 438 (505)
.|+++++++|.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 26
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=9.5e-19 Score=174.75 Aligned_cols=187 Identities=26% Similarity=0.315 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcce
Q psy50 248 EREQKLKKALNKLKGQREMMRNKKQR-QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLR 326 (505)
Q Consensus 248 ~ri~~l~~eL~~l~~~r~~~r~~r~~-~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~ 326 (505)
.-+.++...|+.+.+.|...+.-... .+.++|.|.||||+|||||+++|++.+ +.+.+|+|||..+.+..... ++..
T Consensus 139 Siik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~-~~~R 216 (346)
T COG1084 139 SIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFER-GYLR 216 (346)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeec-CCce
Confidence 33467788888888888776665544 489999999999999999999999997 78999999999877655432 4669
Q ss_pred EEEEeeeeeeecCCCCCcchhhhhHHHH-HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 327 ILYVDTIGFISNIPTTLLEPFKVTLEDA-MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 327 v~l~DT~Gfi~~lp~~lie~f~~tle~i-~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
++++||||+.+..-.+..+--+.+.-++ .-+++|+|++|.|..+... .+.-.+++++++ ..+..|+++|+||+|+.
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~-lE~Q~~L~~eIk--~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYS-LEEQISLLEEIK--ELFKAPIVVVINKIDIA 293 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCC-HHHHHHHHHHHH--HhcCCCeEEEEeccccc
Confidence 9999999997642111111111222222 2378999999999776443 111223333332 12235999999999988
Q ss_pred CCCCCCC---------CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 406 PPGERVT---------EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 406 ~~~~~~~---------~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
..+.... ......+|+..+.+++.+.+.+.....
T Consensus 294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred chhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 6544211 234678999999999999988887743
No 27
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=5.8e-19 Score=183.60 Aligned_cols=159 Identities=24% Similarity=0.289 Sum_probs=128.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CCCcchh--hhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TTLLEPF--KVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~lie~f--~~tl 351 (505)
...+|||||.||+|||||+|+|+|..++.+++...+|+|....... .++..+.++||+|+..... .+-+|.| .+|+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE-ECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 5689999999999999999999999999999999999996443333 3578899999999987532 2234544 4688
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------------CCCCCe
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------------VTEEYD 416 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------------~~~~~~ 416 (505)
..+..||++++|+|++.+... |+..+.....+.| +++++|+||+|++..++. ..+.++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~-qD~~ia~~i~~~g------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 256 KAIERADVVLLVIDATEGISE-QDLRIAGLIEEAG------RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred hHHhhcCEEEEEEECCCCchH-HHHHHHHHHHHcC------CCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE
Confidence 999999999999999998754 5666777776655 489999999999886321 126789
Q ss_pred EEEeccCcccHHHHHHHHHHHHhhh
Q psy50 417 LLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+++||++|.|+..|++.+.+.....
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999998876543
No 28
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.79 E-value=1.1e-18 Score=168.99 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC--cceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN--RLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~--~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|++|||||||+|+|++... .....+..+.++..+...+++ ...+.+|||+|... +..+.. ..++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--~~~l~~------~~~~ 72 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--GGKMLD------KYIY 72 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--HHHHHH------HHhh
Confidence 689999999999999999998752 233344445565444444433 46789999999321 212222 2366
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.||++++|+|++++.+.+....|...+...........|+++|+||+|+....... ...+++++||++|.
T Consensus 73 ~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~ 152 (215)
T cd04109 73 GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGD 152 (215)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 89999999999999887777777777766532212235799999999997433211 13468999999999
Q ss_pred cHHHHHHHHHHHHhh
Q psy50 426 GLAQLKEKVQDMILK 440 (505)
Q Consensus 426 gi~eL~~~I~~~l~~ 440 (505)
|+++++++|.+.+..
T Consensus 153 gv~~lf~~l~~~l~~ 167 (215)
T cd04109 153 RVNLLFQQLAAELLG 167 (215)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 29
>KOG1191|consensus
Probab=99.79 E-value=2.3e-18 Score=179.14 Aligned_cols=166 Identities=21% Similarity=0.238 Sum_probs=123.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh--hh
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF--KV 349 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~ 349 (505)
..+.++.|||+|+||||||||+|+|+..++..+++.+.+|.|.....+ ..+|.++.++||+|+++. ..+.+|++ +.
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v-~~~G~~v~L~DTAGiRe~-~~~~iE~~gI~r 341 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQV-TVNGVPVRLSDTAGIREE-SNDGIEALGIER 341 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEe-ecCCeEEEEEeccccccc-cCChhHHHhHHH
Confidence 345679999999999999999999999999999999999998643333 368999999999999873 23455554 56
Q ss_pred hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccc------cCccEEEEEeCCCCCCCCCCC------------
Q psy50 350 TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK------ILEHVLVVGNKVDAVPPGERV------------ 411 (505)
Q Consensus 350 tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~------~~~p~IlV~NKiDl~~~~~~~------------ 411 (505)
+.+.+..||++++|+|+....... ...+.+.|...+..-. ...|++++.||+|+.......
T Consensus 342 A~k~~~~advi~~vvda~~~~t~s-d~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~ 420 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTES-DLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEG 420 (531)
T ss_pred HHHHHhhcCEEEEEeccccccccc-chHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccccc
Confidence 777888999999999994322222 2334455555543211 236899999999998762211
Q ss_pred --CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 412 --TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 --~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.+.....+|+++++|++.|.+.|.+.+..
T Consensus 421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 421 RSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred CcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 12335669999999999999999998754
No 30
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=2.9e-18 Score=155.00 Aligned_cols=153 Identities=25% Similarity=0.272 Sum_probs=108.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+.+|+++|++|||||||+|+|++.......+...+|.++....... .+..+.++||||+......-....+..+...+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 3579999999999999999999886444556666666654333322 466889999999764221100122344566778
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---CCCCeEEEeccCcccHHHHHH
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---TEEYDLLISATRGTGLAQLKE 432 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---~~~~~v~iSA~~g~gi~eL~~ 432 (505)
.+|++++|+|++++........ +.. . ...|+++|+||+|+....... ...+++++||+++.|+++|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~----~~~--~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI----LEL--P---ADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH----HHh--h---cCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHH
Confidence 8999999999998765543322 221 1 125999999999998655321 145799999999999999999
Q ss_pred HHHHHH
Q psy50 433 KVQDMI 438 (505)
Q Consensus 433 ~I~~~l 438 (505)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998764
No 31
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.78 E-value=9.6e-19 Score=175.38 Aligned_cols=162 Identities=23% Similarity=0.255 Sum_probs=126.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC--CCcchhhhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT--TLLEPFKVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~--~lie~f~~tle 352 (505)
-..-|++||.|||||||||++++... +...+|+|||+.+....+.......+++-|-||+|+.... .+- ...|.
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG---~~FLr 233 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLG---LRFLR 233 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCcc---HHHHH
Confidence 34578999999999999999999987 7899999999999887766667778999999999985432 232 33588
Q ss_pred HHHhhceeEEEeeCCCCCh---HHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC-----------CCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDY---LQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT-----------EEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~---~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~-----------~~~~v~ 418 (505)
++..+-+++||+|++..+. .++.+.+...|..++. ....+|.++|+||+|+....+... ....++
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ 312 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL 312 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence 8999999999999986542 4556677777777753 334579999999999765544211 222333
Q ss_pred EeccCcccHHHHHHHHHHHHhhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
|||.+++|+++|...+.+++.+.
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 32
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=1.9e-18 Score=159.85 Aligned_cols=153 Identities=31% Similarity=0.349 Sum_probs=105.9
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC--CCCcchhhhhHHHHHhhc
Q psy50 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP--TTLLEPFKVTLEDAMLAD 358 (505)
Q Consensus 281 LVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp--~~lie~f~~tle~i~~AD 358 (505)
|+|++|||||||+|+|++... .+.++.++|.++........++..+.++||||+..... ..+.. ..+..+..+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~---~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGN---QFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccH---HHHHHHhccC
Confidence 589999999999999999864 46777888877665443333378899999999864322 11222 2345567799
Q ss_pred eeEEEeeCCCCC------hHHHHHHHHHHHHhcCcc----cccCccEEEEEeCCCCCCCCCCC----------CCCCeEE
Q psy50 359 IIIHVVDVSNPD------YLQQKQHVDETLQHLELE----EKILEHVLVVGNKVDAVPPGERV----------TEEYDLL 418 (505)
Q Consensus 359 liL~VvD~s~~~------~~~~~~~v~~~L~~lg~~----~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~ 418 (505)
++++|+|++++. .......+...+...... ....+|+++|+||+|+....... ...++++
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVP 156 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEE
Confidence 999999999873 333333344333322100 01246999999999997543311 1457999
Q ss_pred EeccCcccHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~ 437 (505)
+||+++.|++++++.+...
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999998654
No 33
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.77 E-value=5.4e-18 Score=162.48 Aligned_cols=161 Identities=17% Similarity=0.091 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCc-chhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLL-EPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~li-e~f~~tle~i~ 355 (505)
+|+|+|.+|||||||++++++..... ...+..+.+.........+ ...+.+|||+|.... +.... +........+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRY-PGTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccC-CccchhHHHHHHHhhhc
Confidence 68999999999999999999875321 1122222222222222222 256889999996421 11111 11111334567
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccCc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATRG 424 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~g 424 (505)
.+|++++|+|++++.+.+....+.+.+...........|+++|+||+|+....... ...+++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 89999999999998777665555554443321011235999999999996532110 1457899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++|++.+.+.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999988754
No 34
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=3.3e-18 Score=168.07 Aligned_cols=156 Identities=26% Similarity=0.372 Sum_probs=113.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|+||||||||+|+|++.. ..+++++|+|.++....... .+..+.++||||+.+..+.. .......+..++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~-~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADG-KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccc-hhHHHHHHHhhccC
Confidence 68999999999999999999986 45788899998775443323 46789999999987533211 12223345678889
Q ss_pred ceeEEEeeCCCCChHHHH--------------------------------------------HHHHHHHHhcCccc----
Q psy50 358 DIIIHVVDVSNPDYLQQK--------------------------------------------QHVDETLQHLELEE---- 389 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~--------------------------------------------~~v~~~L~~lg~~~---- 389 (505)
|++++|+|++++.. +. +.+..+|+++++.+
T Consensus 79 d~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~ 156 (233)
T cd01896 79 DLILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred CEEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence 99999999987542 22 33344444444322
Q ss_pred -----------------ccCccEEEEEeCCCCCCCCCC---CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 390 -----------------KILEHVLVVGNKVDAVPPGER---VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 390 -----------------~~~~p~IlV~NKiDl~~~~~~---~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
..+.|+++|+||+|+....+. ....+++++||++|.|+++|++.|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 234689999999999765431 1135689999999999999999999887
No 35
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.76 E-value=1.2e-17 Score=152.60 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|+|++.... ....+..+.+........++ ...+.+|||||... ... .....+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~------~~~--~~~~~~~~ 72 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER------FRS--LIPSYIRD 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH------HHH--HHHHHhcc
Confidence 6899999999999999999988632 34455556555444433332 35789999999321 111 12334678
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
+|++++|+|++++.+......+...+..... .+.|+++|+||+|+....... ...+++++||+++.|
T Consensus 73 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTDKWIDDVRDERG---NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHN 149 (161)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence 9999999999988766555555444332211 135999999999996433221 145689999999999
Q ss_pred HHHHHHHHHHH
Q psy50 427 LAQLKEKVQDM 437 (505)
Q Consensus 427 i~eL~~~I~~~ 437 (505)
+++++++|.+.
T Consensus 150 v~~l~~~i~~~ 160 (161)
T cd01861 150 VKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=1.6e-17 Score=153.35 Aligned_cols=151 Identities=19% Similarity=0.178 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... ....+..+.+........ .....+.+|||+|... ...+ ....++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~------~~~~--~~~~~~ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER------YRTI--TTAYYR 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH------HHHH--HHHHcc
Confidence 47999999999999999999987522 111111111111111111 2346789999999421 1111 234467
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++.+.+....+...+...... ..|+++|+||+|+....... ...+++++||++|.
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENI 149 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 899999999999887666555555555544322 35899999999997644321 13479999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy50 426 GLAQLKEKVQDMIL 439 (505)
Q Consensus 426 gi~eL~~~I~~~l~ 439 (505)
|+++|+++|.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=7.7e-18 Score=181.71 Aligned_cols=158 Identities=25% Similarity=0.260 Sum_probs=114.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhh-hhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFK-VTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle 352 (505)
...++|+|||.||||||||+|+|++.....+.+.+..|.+........ .+..+.+|||||+... ...+.+.+. .+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD-AKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc-chhHHHHHHHHHHH
Confidence 356899999999999999999999976555667777776654433322 4567999999997532 122323332 2455
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCccc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTG 426 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~g 426 (505)
.+..||++|+|+|++++.+.. ...+...++..+ +|+++|+||+|+....... .....+++||++|.|
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~-~~~i~~~l~~~~------~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATAT-DEAVARVLRRSG------KPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRG 186 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCC
Confidence 678899999999999876544 345666666432 5999999999986432111 123468999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy50 427 LAQLKEKVQDMILK 440 (505)
Q Consensus 427 i~eL~~~I~~~l~~ 440 (505)
+++|++.|.+.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988755
No 38
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=9.5e-18 Score=181.02 Aligned_cols=159 Identities=23% Similarity=0.215 Sum_probs=116.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCC-cchhh--hhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTL-LEPFK--VTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~l-ie~f~--~tl 351 (505)
..++|+++|+||||||||+|+|++.....+.+.+++|.+........ ++..+.+|||||+........ .+.+. .+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 46899999999999999999999987656778888888764433333 466789999999865432221 23332 234
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CCCCCeEE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VTEEYDLL 418 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~~~~~v~ 418 (505)
..+..||++++|+|++++.+..... +...+... .+|+|+|+||+|+...... ....++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~------~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA------GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 5678899999999999887655333 33333332 2599999999999753210 11467899
Q ss_pred EeccCcccHHHHHHHHHHHHhhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+||++|.|+++|++.|.+.+...
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887543
No 39
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.75 E-value=2e-17 Score=152.14 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=102.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||+|+|++.... ....+..+.+.........+ ...+.++||+|... .... ....+.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~--~~~~~~ 74 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER------YRAI--TSAYYR 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH------HHHH--HHHHHC
Confidence 57999999999999999999987522 22233333333333222222 35788999999421 1111 223456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++.+......+...+...... ..|+++|+||+|+....... ...+++++||++|.
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (165)
T cd01868 75 GAVGALLVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGT 151 (165)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 799999999999887766555555555444321 25999999999987543211 14579999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|++++++.|.+.+
T Consensus 152 ~v~~l~~~l~~~i 164 (165)
T cd01868 152 NVEEAFKQLLTEI 164 (165)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.75 E-value=1.2e-17 Score=152.63 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=100.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++.+... ...+..++.+......... ....+.+|||+|... ...+. ...+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~--~~~~~ 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ------FTAMR--DLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc------cchHH--HHHhh
Confidence 4799999999999999999997642 2222222222211112122 235678899999422 11121 22356
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++.+.+....+.+.+..... ....|+++|+||+|+........ ..+++++||++|.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04136 72 NGQGFVLVYSITSQSSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKI 149 (163)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 79999999999988776655555555554321 12359999999999865332110 3578999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|+++++++|.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
No 41
>PRK09866 hypothetical protein; Provisional
Probab=99.75 E-value=1.3e-17 Score=179.77 Aligned_cols=180 Identities=20% Similarity=0.227 Sum_probs=130.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee
Q psy50 238 FLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH 317 (505)
Q Consensus 238 ~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~ 317 (505)
....|||.++++|..|+++|+++.+.+ +.++++|++|+|||||+|+|+|.....+++.+++++.+..+
T Consensus 43 ~~~~drR~i~~ri~~L~~~L~Kv~~~~------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~ 110 (741)
T PRK09866 43 ALPWSQPNIAERHAMLNNELRKISRLE------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIR 110 (741)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhccc------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEE
Confidence 356799999999999999999998665 89999999999999999999998766565777766622211
Q ss_pred cc--------c-------------c-------------------------------------------------------
Q psy50 318 EG--------M-------------L------------------------------------------------------- 321 (505)
Q Consensus 318 ~~--------~-------------~------------------------------------------------------- 321 (505)
.. . +
T Consensus 111 ~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndi 190 (741)
T PRK09866 111 HTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDL 190 (741)
T ss_pred ecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHH
Confidence 00 0 0
Q ss_pred -----------C--------------------C-----cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEee
Q psy50 322 -----------P--------------------N-----RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVD 365 (505)
Q Consensus 322 -----------~--------------------~-----~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD 365 (505)
| . ..+++|+||||+.......+.+.+ .+.+..||+|++|+|
T Consensus 191 vr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M---~eqL~eADvVLFVVD 267 (741)
T PRK09866 191 VRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKML---NQQLARASAVLAVLD 267 (741)
T ss_pred HHHHHhhcCCCcHHHHhhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHH---HHHHhhCCEEEEEEe
Confidence 0 0 146789999998652111122222 346788999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------------CCCCCeEEEeccCcccHH
Q psy50 366 VSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------------VTEEYDLLISATRGTGLA 428 (505)
Q Consensus 366 ~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------------~~~~~~v~iSA~~g~gi~ 428 (505)
+.+..... ...+.+.++..+. ..|+++|+||+|+...... ..+..+|||||+.|.|++
T Consensus 268 at~~~s~~-DeeIlk~Lkk~~K----~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid 342 (741)
T PRK09866 268 YTQLKSIS-DEEVREAILAVGQ----SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLAN 342 (741)
T ss_pred CCCCCChh-HHHHHHHHHhcCC----CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHH
Confidence 98754433 4456666766542 1399999999998753221 014569999999999999
Q ss_pred HHHHHHHHH
Q psy50 429 QLKEKVQDM 437 (505)
Q Consensus 429 eL~~~I~~~ 437 (505)
.|++.|...
T Consensus 343 ~LLdeI~~~ 351 (741)
T PRK09866 343 RARHELANN 351 (741)
T ss_pred HHHHHHHhC
Confidence 999999774
No 42
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=3.7e-18 Score=154.51 Aligned_cols=149 Identities=23% Similarity=0.268 Sum_probs=104.3
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHHHhhc
Q psy50 280 AVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAMLAD 358 (505)
Q Consensus 280 aLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~~AD 358 (505)
+++|.+|||||||+|+|++.......+.+.+|.+....... ..+..+.++||||+....+ .....+ ..+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE-WGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE-ECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCC
Confidence 58999999999999999987544445555666554333322 2457899999999765322 122222 22345677899
Q ss_pred eeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------CCCCCeEEEeccCcccHHHHHH
Q psy50 359 IIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------VTEEYDLLISATRGTGLAQLKE 432 (505)
Q Consensus 359 liL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~~~~~~v~iSA~~g~gi~eL~~ 432 (505)
++++|+|+.++..... ..+...++..+ .|+++|+||+|+...... ....+++++||++|.|++++++
T Consensus 79 ~ii~v~d~~~~~~~~~-~~~~~~~~~~~------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 79 VILFVVDGREGLTPAD-EEIAKYLRKSK------KPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred EEEEEEeccccCCccH-HHHHHHHHhcC------CCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHH
Confidence 9999999987654432 33455665543 499999999999765432 1123689999999999999999
Q ss_pred HHHHH
Q psy50 433 KVQDM 437 (505)
Q Consensus 433 ~I~~~ 437 (505)
+|.+.
T Consensus 152 ~l~~~ 156 (157)
T cd01894 152 AILEL 156 (157)
T ss_pred HHHhh
Confidence 99875
No 43
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=2e-17 Score=152.42 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=100.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCcchhhh-hHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLLEPFKV-TLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i 354 (505)
.+|+++|++|||||||++++.+....... ....+.+.........+ ...+.+|||||.. .|.. +...+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 73 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE---------RFRTITQSYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHh
Confidence 68999999999999999999876422111 11112222222222222 2578999999932 1221 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~ 423 (505)
..+|++++|+|++++.+......+...+..... ...|+++|+||+|+....... ....++++||++
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEKYGA---SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCC
Confidence 679999999999998776655566665554432 235999999999997554321 124689999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
|.|++++++.|.+.
T Consensus 151 ~~~v~~~~~~l~~~ 164 (165)
T cd01864 151 SQNVEEAFLLMATE 164 (165)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999765
No 44
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=2.6e-17 Score=151.66 Aligned_cols=151 Identities=21% Similarity=0.140 Sum_probs=102.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||++++++.... ....+..+.+......... ....+.+|||||... ... .....++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~--~~~~~~~ 73 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER------FRT--ITSSYYR 73 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh------HHH--HHHHHhC
Confidence 57999999999999999999986522 1111222222222222222 245789999999321 111 1223456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+......+...+..+..+ ..|+++|+||+|+....... ...+++++||++|.
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNAT 150 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence 799999999999987766666666666554322 25999999999986543321 14579999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy50 426 GLAQLKEKVQDMIL 439 (505)
Q Consensus 426 gi~eL~~~I~~~l~ 439 (505)
|++++++.|.+.+.
T Consensus 151 ~v~~~~~~i~~~~~ 164 (166)
T cd01869 151 NVEQAFMTMAREIK 164 (166)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.75 E-value=2.6e-17 Score=152.28 Aligned_cols=152 Identities=17% Similarity=0.108 Sum_probs=102.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|++|||||||+|++++.... ..-.+..+.+......... ....+.+|||+|... .... ....+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~------~~~~--~~~~~ 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER------FRTI--TTAYY 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchHH------HHHH--HHHHh
Confidence 368999999999999999999987521 1111111122211112222 246789999999321 1111 22446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..||++++|+|++++.+......+...+..... ...|+++|+||+|+....... ...+++++||++|
T Consensus 74 ~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIRNWMRNIEEHAS---EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKAN 150 (167)
T ss_pred CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 789999999999988776655556655554422 235999999999997543221 1357899999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.|++++++.|.+.+.
T Consensus 151 ~~v~~~~~~i~~~~~ 165 (167)
T cd01867 151 INVEEAFFTLAKDIK 165 (167)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998874
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.75 E-value=2.2e-17 Score=152.39 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||+|++++.... ..+..+.-......... .....+.++||+|... ...+ ....+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ------FPAM--QRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCc------chHH--HHHHhh
Confidence 47999999999999999999986521 12111111111111111 2346788999999532 1111 123456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++.+.+....+.+.+..+........|+++|+||+|+....+.. ...+++++||++|.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~ 151 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCC
Confidence 79999999999998877666677776766532222346999999999996633321 13468999999999
Q ss_pred cHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDM 437 (505)
Q Consensus 426 gi~eL~~~I~~~ 437 (505)
|+++++++|.++
T Consensus 152 ~v~~~f~~l~~~ 163 (165)
T cd04140 152 NVQELFQELLNL 163 (165)
T ss_pred CHHHHHHHHHhc
Confidence 999999999754
No 47
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=1.4e-17 Score=152.05 Aligned_cols=144 Identities=30% Similarity=0.317 Sum_probs=96.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--CCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDS--LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~--~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i 354 (505)
.|+++|++|||||||+|+|++... ........+|.+..........+..+.+|||||.. .| ......+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~---------~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE---------KFIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH---------HHHHHHHhhh
Confidence 589999999999999999997531 11112234455544333333336789999999942 22 2234557
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC----------C-----CCCCeEEE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER----------V-----TEEYDLLI 419 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~----------~-----~~~~~v~i 419 (505)
..+|++++|+|+++..... .......++..+. +|+++|+||+|+...... . ...+++++
T Consensus 73 ~~ad~ii~V~d~~~~~~~~-~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQ-TREHLEILELLGI-----KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred hcCCEEEEEEECCCCccHh-HHHHHHHHHHhCC-----CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 7899999999998743222 2222333443332 389999999999754210 0 13579999
Q ss_pred eccCcccHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQD 436 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~ 436 (505)
||++|.|++++++.|.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998854
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.75 E-value=3.4e-17 Score=151.76 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=103.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+++|.+|||||||+|++++...... ..+..+.+......... ....+.+|||+|.. .+.. ....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQE---------SFRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 35899999999999999999998753222 11222233222222222 24578999999931 2221 3345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++.+......+...+.....+ ..|+++|+||+|+....... ...+++++||++
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS---NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKT 150 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 67899999999999877665555555555443222 35999999999997433221 145799999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
+.|+++++..+.+.+.
T Consensus 151 ~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 151 ASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988774
No 49
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.75 E-value=3.4e-17 Score=150.21 Aligned_cols=149 Identities=23% Similarity=0.266 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee-eeeeeecccc--CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT-LDVTTHEGML--PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT-ld~t~~~~~~--~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
+|+++|++|||||||+++|.........++..++ .++....... .....+.+|||+|.-. ...+ ....+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL------YSDM--VSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH------HHHH--HHHHh
Confidence 6899999999999999999864222334443332 2322222222 2457899999999321 1111 22345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+......+...+.... ...|+++|+||+|+....... ...+++++||++|
T Consensus 74 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (164)
T cd04101 74 ESPSVFILVYDVSNKASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRG 149 (164)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 67999999999998876655555555555432 235999999999996553321 1356899999999
Q ss_pred ccHHHHHHHHHHHH
Q psy50 425 TGLAQLKEKVQDMI 438 (505)
Q Consensus 425 ~gi~eL~~~I~~~l 438 (505)
.|++++++.|.+.+
T Consensus 150 ~gi~~l~~~l~~~~ 163 (164)
T cd04101 150 VGYEEPFESLARAF 163 (164)
T ss_pred CChHHHHHHHHHHh
Confidence 99999999998865
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.74 E-value=2.4e-17 Score=156.35 Aligned_cols=154 Identities=17% Similarity=0.108 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|||||||+++|+.... ..++..++.+......... ....+.+|||+|... ...+ ....+..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~~~ 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE------YTAL--RDQWIRE 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchh------hHHH--HHHHHHh
Confidence 489999999999999999986542 2223222222111111122 235688999999421 1112 1234678
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~g 426 (505)
+|++++|+|++++.+......+...+...........|+++|+||+|+........ ..+++++||++|.|
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~ 150 (190)
T cd04144 71 GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 99999999999987776666666655544221123469999999999965333211 34689999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy50 427 LAQLKEKVQDMILKA 441 (505)
Q Consensus 427 i~eL~~~I~~~l~~~ 441 (505)
++++++++.+.+.+.
T Consensus 151 v~~l~~~l~~~l~~~ 165 (190)
T cd04144 151 VERAFYTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 51
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.74 E-value=3.9e-17 Score=150.77 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=102.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeee-eeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA-TLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft-Tld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
.+|+++|++|||||||++++++.... ..+..+ +.+........ .....+.+|||+|.. .|.. ....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE---------RFRAVTRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 47999999999999999999977522 222111 11221111112 224578999999932 2211 2345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
++.+|++++|+|++++.+......+...+.....+ ..|+++|+||+|+....... ...+++++||++
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 148 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKT 148 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCC
Confidence 67899999999999987766666665555444322 25899999999997654321 145789999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|.|+++++..+...+.
T Consensus 149 ~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 149 GENVEDAFLETAKKIY 164 (166)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987763
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.74 E-value=3.2e-17 Score=150.36 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|++++.... ..+..++.+......... ....+.+|||||... ...+ ....+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~------~~~~--~~~~~~~ 71 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE------FSAM--RDQYMRT 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccc------chHH--HHHHHhh
Confidence 6899999999999999999986532 222222222211111122 246788999999432 1112 1233567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
+|.+++|+|++++.+.+....+...+.... ...+.|+++|+||+|+....... ...+++++||++|.|
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (164)
T smart00173 72 GEGFLLVYSITDRQSFEEIKKFREQILRVK--DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN 149 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCC
Confidence 999999999998876655555555444332 11246999999999987543211 145799999999999
Q ss_pred HHHHHHHHHHHHh
Q psy50 427 LAQLKEKVQDMIL 439 (505)
Q Consensus 427 i~eL~~~I~~~l~ 439 (505)
++++++.|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=3.9e-17 Score=149.49 Aligned_cols=151 Identities=16% Similarity=0.139 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~ 355 (505)
+|+++|++|||||||+|+|++.... ....+..+.+........ .....+.+|||+|.- .+.. ....+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP---------EYLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccH---------HHHHHHHHHhc
Confidence 6899999999999999999987632 222222222222222211 235788999999942 1111 223356
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcc--cccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELE--EKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~--~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
.+|++++|+|++++.+......+...+.....+ .....|+++|+||+|+....... ...+++++||++
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACT 151 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCC
Confidence 799999999999987666555565555543221 11236999999999997422211 135789999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|.|++++++.|.+.+
T Consensus 152 ~~gi~~l~~~l~~~l 166 (168)
T cd04119 152 GEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998876
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=3.6e-17 Score=155.27 Aligned_cols=151 Identities=19% Similarity=0.173 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee-eeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT-LDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT-ld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i 354 (505)
+|+++|.+|||||||++++++.... .+++..++ .+........ .....+.+|||||- +.+.. ....+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ---------ERFRSVTHAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc---------HHHHHhhHHHc
Confidence 6899999999999999999887532 22222221 1211111111 12467889999992 12221 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+.+....+...+...... ..|+++|+||+|+....... ...+++++||++|
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~ 148 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTG 148 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 6799999999999987766666666666655432 35999999999996533211 1357999999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+++|+++|.+.+.+.
T Consensus 149 ~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 149 LNVELAFTAVAKELKHR 165 (191)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 55
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=1.6e-17 Score=176.81 Aligned_cols=154 Identities=23% Similarity=0.268 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~~ 356 (505)
+|+|||.||||||||+|+|++.....+.+.+..|.+.......+ ++..+.++||||+... ...+.+.+ ..+...+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED-DDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc-chhHHHHHHHHHHHHHhh
Confidence 48999999999999999999987666778888887765544433 4668999999997532 22233333 335667888
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccHHHH
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGLAQL 430 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi~eL 430 (505)
||++++|+|++++.... ...+.++|++.+ +|+++|+||+|+....... ...+++++||++|.|+++|
T Consensus 79 ad~vl~vvD~~~~~~~~-d~~i~~~l~~~~------~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 79 ADVILFVVDGREGLTPE-DEEIAKWLRKSG------KPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDL 151 (429)
T ss_pred CCEEEEEEeCCCCCCHH-HHHHHHHHHHhC------CCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHH
Confidence 99999999998865543 445677777643 4999999999987644321 1347899999999999999
Q ss_pred HHHHHHHHhh
Q psy50 431 KEKVQDMILK 440 (505)
Q Consensus 431 ~~~I~~~l~~ 440 (505)
++.+.+.+.+
T Consensus 152 l~~i~~~l~~ 161 (429)
T TIGR03594 152 LDAILELLPE 161 (429)
T ss_pred HHHHHHhcCc
Confidence 9999998754
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.74 E-value=4.9e-17 Score=148.79 Aligned_cols=150 Identities=14% Similarity=0.096 Sum_probs=99.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||+|++++... ...+..++.+......... ....+.++||||... ...+ ....+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~--~~~~~~ 72 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE------FSAM--REQYMR 72 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcc------hhHH--HHHHHh
Confidence 5799999999999999999987642 2222222222111111122 235788999999431 1122 123466
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++.+......+...+.... .....|+++|+||+|+....... ...+++++||++|.
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQILRVK--DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRL 150 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCC
Confidence 7999999999998876655555554444331 11235999999999986543211 13579999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|++++++.|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=4.3e-17 Score=148.30 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||+|+|++.... ..+..++.+......... ....+.+|||+|.-. ...+ ....+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~l--~~~~~~ 71 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAM--RDQYMR 71 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcc------hHHH--HHHHHh
Confidence 47999999999999999999986522 222222211111111122 234577899999321 1122 123456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~g 426 (505)
.+|.+++|+|++++.+......+...+.... .....|+++|+||+|+....... ...+++++||++|.|
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVK--DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQG 149 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCC
Confidence 7999999999998766554444444444332 11235999999999987632211 145799999999999
Q ss_pred HHHHHHHHHHHH
Q psy50 427 LAQLKEKVQDMI 438 (505)
Q Consensus 427 i~eL~~~I~~~l 438 (505)
+++++++|.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 58
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.73 E-value=7.1e-17 Score=148.31 Aligned_cols=146 Identities=23% Similarity=0.218 Sum_probs=98.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
|.|+++|++|||||||+|+|++.... .......|.+......... .+..+.++||||... ...+ ....+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~------~~~~--~~~~~ 71 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA------FTNM--RARGA 71 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH------HHHH--HHHHH
Confidence 57999999999999999999987532 3333344444332222222 367899999999421 1111 12345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------------CCCCCeE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------------VTEEYDL 417 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------------~~~~~~v 417 (505)
..+|++++|+|++++.... .......+...+ .|+++|+||+|+...... ....+++
T Consensus 72 ~~~d~il~v~d~~~~~~~~-~~~~~~~~~~~~------~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQ-TIEAIKLAKAAN------VPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred hhcCEEEEEEECCCCccHH-HHHHHHHHHHcC------CCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEE
Confidence 6799999999998865332 222334444333 499999999998743210 0124789
Q ss_pred EEeccCcccHHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l 438 (505)
++||++|.|+++|+++|.+..
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EeecccCCCHHHHHHHHHHhh
Confidence 999999999999999998875
No 59
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.73 E-value=5.6e-17 Score=156.03 Aligned_cols=149 Identities=26% Similarity=0.249 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcccee-eeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-FATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i 354 (505)
.|+++|.+|||||||++++..... ..++. ..+.+......... ....+.+|||+|. +.|+. ....+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq---------e~~~~l~~~y~ 70 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ---------ERFNSITSAYY 70 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC--CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc---------hhhHHHHHHHh
Confidence 589999999999999999987652 22221 11223222222222 2478899999993 22322 23456
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~ 423 (505)
+.||++++|+|++++.+.+....|.+.++..... ..|+++|+||+|+....+.. ....++++||++
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~---~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 7899999999999998887777777777655322 35999999999996543321 124589999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|+++++++|.+.+.+
T Consensus 148 g~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 148 NFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 60
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=7.2e-17 Score=147.49 Aligned_cols=149 Identities=20% Similarity=0.196 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh-hhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK-VTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i~ 355 (505)
+|+++|++|||||||+++|++... ........+.+......... ....+.+|||+|.. .+. .....+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE---------RFRSITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHhC
Confidence 699999999999999999998753 22222222333222222222 23578899999932 121 1233356
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+.+....+...+.....+ ..|+++|+||+|+....... ...+++++||++|.
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~---~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADP---NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNT 148 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 799999999999887765555555554443222 35999999999987643211 14579999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy50 426 GLAQLKEKVQDMIL 439 (505)
Q Consensus 426 gi~eL~~~I~~~l~ 439 (505)
|++++++.|.+.+.
T Consensus 149 ~i~~l~~~i~~~~~ 162 (164)
T smart00175 149 NVEEAFEELAREIL 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 61
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.73 E-value=5.6e-17 Score=149.10 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=98.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+++++.... ..++..++.+......... ....+.+|||+|... ...+. ...+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~--~~~~~ 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ------FTAMR--DLYMK 71 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCccc------chhHH--HHHHh
Confidence 4799999999999999999986532 2222222222111112222 245677999999421 12221 22456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+.+....+...+.... ...+.|+++|+||+|+....... ...+++++||++|.
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (164)
T cd04175 72 NGQGFVLVYSITAQSTFNDLQDLREQILRVK--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKI 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 7999999999988776655554544443321 11235999999999996543211 13579999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|+++++.+|.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 62
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=9.1e-17 Score=153.70 Aligned_cols=155 Identities=19% Similarity=0.078 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|||||||+++|++.... ....+..+.+......... ....+.+|||+|.-. ...+ ....+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~------~~~~--~~~~~~ 72 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER------FGGM--TRVYYR 72 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh------hhhh--HHHHhC
Confidence 6899999999999999999986421 1112222223222222222 356789999999411 1111 233467
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccC
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATR 423 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~ 423 (505)
.||++++|+|++++.+.+....|...+... ........|+++|+||+|+....... ...+++++||++
T Consensus 73 ~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 152 (201)
T cd04107 73 GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKE 152 (201)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCC
Confidence 899999999999988776665555554432 22222346999999999997422211 125799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|+++++++|.+.+.+.
T Consensus 153 ~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 153 GINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 63
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=4.1e-17 Score=173.77 Aligned_cols=158 Identities=23% Similarity=0.262 Sum_probs=115.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC-CCcchh--hhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT-TLLEPF--KVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~-~lie~f--~~tl 351 (505)
...+|+++|.+|+|||||+|+|++.....+.+...+|.+........ ++..+.++||||+...... ..++.+ ..++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 45789999999999999999999987666778888887754333322 4568999999998653221 123433 3456
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-C-------------CCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE-R-------------VTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~-~-------------~~~~~~v 417 (505)
..+..||++++|+|++++.+.. ...+...+...+ +|+++|+||+|+..... . ....+++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~-~~~~~~~~~~~~------~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQ-DLRIAGLILEAG------KALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHH-HHHHHHHHHHcC------CcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceE
Confidence 7788999999999999886654 333444444333 49999999999972211 0 0146899
Q ss_pred EEeccCcccHHHHHHHHHHHHhh
Q psy50 418 LISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
++||++|.|++++++++.+.+..
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 64
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=3e-17 Score=149.09 Aligned_cols=145 Identities=27% Similarity=0.206 Sum_probs=100.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH--Hhhc
Q psy50 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA--MLAD 358 (505)
Q Consensus 281 LVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i--~~AD 358 (505)
|+|++|||||||+|++++.. ..++.++++|.+......... +..+.++||||+....+......+. ...+ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLG-GKEIEIVDLPGTYSLSPYSEDEKVA--RDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeC-CeEEEEEECCCccccCCCChhHHHH--HHHhcCCCCc
Confidence 58999999999999999976 456667777777655444443 4689999999975422211111221 1122 4799
Q ss_pred eeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEeccCcccHHH
Q psy50 359 IIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISATRGTGLAQ 429 (505)
Q Consensus 359 liL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~~g~gi~e 429 (505)
++++|+|++++... ..+...+... .+|+++|+||+|+........ ..+++++||++|.|+++
T Consensus 77 ~vi~v~d~~~~~~~---~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 77 LIVNVVDATNLERN---LYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred EEEEEeeCCcchhH---HHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHH
Confidence 99999999875432 2223333333 259999999999976542211 35799999999999999
Q ss_pred HHHHHHHHH
Q psy50 430 LKEKVQDMI 438 (505)
Q Consensus 430 L~~~I~~~l 438 (505)
+++.|...+
T Consensus 148 l~~~l~~~~ 156 (158)
T cd01879 148 LKDAIAELA 156 (158)
T ss_pred HHHHHHHHh
Confidence 999998764
No 65
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=7.8e-17 Score=150.42 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-----------CCcceEEEEeeeeeeecCCCCCcc
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-----------PNRLRILYVDTIGFISNIPTTLLE 345 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-----------~~~~~v~l~DT~Gfi~~lp~~lie 345 (505)
.+|+++|.+|||||||++++++.... .......+.+........ .....+.+|||+|..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFN-PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 67999999999999999999876421 111111111111111111 124678999999931
Q ss_pred hhhh-hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCC
Q psy50 346 PFKV-TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEE 414 (505)
Q Consensus 346 ~f~~-tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~ 414 (505)
.+.. ....++.+|++++|+|++++.+......+...+...... ...|+++|+||+|+....... ...
T Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 152 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC--ENPDIVLCGNKADLEDQRQVSEEQAKALADKYGI 152 (180)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEeCccchhcCccCHHHHHHHHHHcCC
Confidence 2221 234467899999999999887766666665555443211 135899999999997543321 135
Q ss_pred CeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+++++||++|.|++++++.|.+.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999987643
No 66
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=5.8e-17 Score=173.05 Aligned_cols=158 Identities=22% Similarity=0.236 Sum_probs=117.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC-CCcchh--hhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT-TLLEPF--KVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~-~lie~f--~~tl 351 (505)
...+|+++|.||+|||||+|+|++.....+.+...+|.+....... .++..+.++||||+...... ..++.+ ..++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE-ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 5689999999999999999999998766677888888775433222 35678999999998653321 123333 3456
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CCCCCeEE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VTEEYDLL 418 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~~~~~v~ 418 (505)
..+..+|++++|+|++++.... ...+...+...+ +|+++|+||+|+...... ....++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~-~~~i~~~~~~~~------~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQ-DLRIAGLALEAG------RALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHHcC------CcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEE
Confidence 7788999999999999886544 444555554433 499999999999743211 11468999
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+||++|.|++++++.+.+....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 67
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.72 E-value=6.9e-17 Score=148.19 Aligned_cols=150 Identities=17% Similarity=0.100 Sum_probs=98.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++...... ..+..+..+......... ....+.+|||+|... ...+ ....+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ------FASM--RDLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccc------ccch--HHHHHh
Confidence 47999999999999999999876522 122111111111112222 234677999999421 1111 122356
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++|.
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKT 149 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 79999999999998776655566555554421 12369999999999865332110 3478999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|+++++.++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999997654
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=1.1e-16 Score=146.59 Aligned_cols=147 Identities=20% Similarity=0.157 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh-hhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK-VTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i~ 355 (505)
+|+++|++|||||||+++|.+.... .......+.+......... ....+.+|||+|.. .+. .....+.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE---------RFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchH---------HHHHhHHHHhc
Confidence 6899999999999999999877532 1111112222222112222 24678899999942 121 1234466
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++........+...+..+..+ ..|+++|+||+|+....... ...+++++||+++.
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASP---NIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGE 148 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 799999999999987766555555555444322 35999999999997643321 14679999999999
Q ss_pred cHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDM 437 (505)
Q Consensus 426 gi~eL~~~I~~~ 437 (505)
|++++++++.+.
T Consensus 149 ~i~~~~~~~~~~ 160 (161)
T cd04113 149 NVEEAFLKCARS 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999764
No 69
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=4.1e-17 Score=174.16 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=112.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~ 355 (505)
++|+|+|.||||||||+|+|++.....+.+.+..|.+........ ++..+.++||||+... ..++.+.+ ..+...+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPD-DDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCc-chhHHHHHHHHHHHHHH
Confidence 689999999999999999999987555677777777765444333 4588999999998642 11122223 23456678
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccHHH
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi~e 429 (505)
.||++++|+|++++.... ...+.++|+..+ .|+++|+||+|+....... ....++++||++|.|+++
T Consensus 80 ~ad~il~vvd~~~~~~~~-~~~~~~~l~~~~------~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 80 EADVILFVVDGRAGLTPA-DEEIAKILRKSN------KPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHH
Confidence 899999999998865443 344566777653 4999999999975432211 133589999999999999
Q ss_pred HHHHHHHHH
Q psy50 430 LKEKVQDMI 438 (505)
Q Consensus 430 L~~~I~~~l 438 (505)
|++.|.+..
T Consensus 153 l~~~I~~~~ 161 (435)
T PRK00093 153 LLDAILEEL 161 (435)
T ss_pred HHHHHHhhC
Confidence 999998743
No 70
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.72 E-value=6.3e-17 Score=147.78 Aligned_cols=146 Identities=22% Similarity=0.168 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ 356 (505)
.|+++|++|||||||+++|++.... ...+ ..|........ ...+..+.++||||... +.. ....+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~-~~~~-~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~ 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQII-VPTVGFNVESF-EKGNLSFTAFDMSGQGK---------YRGLWEHYYKN 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCC-ccee-cCccccceEEE-EECCEEEEEEECCCCHh---------hHHHHHHHHcc
Confidence 3789999999999999999986421 1111 22222211111 12467889999999432 211 1234678
Q ss_pred hceeEEEeeCCCCChHHHHHHHHH-HHHhcCcccccCccEEEEEeCCCCCCCCCC------CC-------CCCeEEEecc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDE-TLQHLELEEKILEHVLVVGNKVDAVPPGER------VT-------EEYDLLISAT 422 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~-~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~~-------~~~~v~iSA~ 422 (505)
+|++++|+|++++........+.. +++...+. ....|+++|+||+|+...... .. ..+++++||+
T Consensus 69 ~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 69 IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIK-HRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc-cCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 999999999998765443333332 22221211 124699999999998754221 00 1247899999
Q ss_pred CcccHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQD 436 (505)
Q Consensus 423 ~g~gi~eL~~~I~~ 436 (505)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999864
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=1.1e-16 Score=147.39 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|||||||++++++..... ........+........ .....+.+|||+|... ...+ ....+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~--~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER------FQTM--HASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh------hhhh--hHHHhCC
Confidence 68999999999999999998765221 11111111111111111 2346788999999422 1111 1234678
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------CCCCCeEEEeccCcccHHH
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------VTEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------~~~~~~v~iSA~~g~gi~e 429 (505)
+|++++|+|++++.+......+...+.... + ..|+++|+||+|+...... ....+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEELREYR-P---EIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-C---CCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999998877665556666555431 1 3599999999998532110 0135789999999999999
Q ss_pred HHHHHHHHHhh
Q psy50 430 LKEKVQDMILK 440 (505)
Q Consensus 430 L~~~I~~~l~~ 440 (505)
+++.+.+.+.+
T Consensus 149 l~~~l~~~~~~ 159 (161)
T cd04124 149 LFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 72
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=1.8e-16 Score=146.07 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=100.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+++|++|||||||+++|++.... .......+.+......... ....+.++||+|.. .+.. ....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE---------RFRSITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 478999999999999999999865422 2222222222222222222 23567899999932 1211 2345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++.+......+...++.+... ..|+++|+||+|+....+... ..+++++||++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 153 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKE 153 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 67799999999999876655455555555554322 258999999999875443211 35689999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|.|++++++.|.+.+
T Consensus 154 ~~gv~~l~~~i~~~~ 168 (169)
T cd04114 154 SDNVEKLFLDLACRL 168 (169)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 73
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=5.8e-17 Score=149.12 Aligned_cols=147 Identities=22% Similarity=0.246 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC---CccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSL---VPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~---~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
.|+++|++|||||||+|+|++.... ...+...+|.......... ++..+.++||||... ... .....+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~------~~~--~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES------LRS--LWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh------hHH--HHHHHh
Confidence 3799999999999999999875321 1122223344333333222 467899999999431 111 123446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHH-HHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------------CCCCeEE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHV-DETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------------TEEYDLL 418 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v-~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------------~~~~~v~ 418 (505)
..+|++++|+|++++........+ ..+++.... ...|+++|+||+|+....... ...++++
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEAL---EGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLP 148 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhh---cCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEE
Confidence 789999999999876543333222 222322222 235999999999986543210 1236999
Q ss_pred EeccCcccHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~ 436 (505)
+||++|.|+++++++|.+
T Consensus 149 ~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 149 VSALEGTGVREGIEWLVE 166 (167)
T ss_pred eeCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 74
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=1.4e-16 Score=145.90 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=104.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CCCcchh--hhhHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TTLLEPF--KVTLE 352 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~lie~f--~~tle 352 (505)
..+|+++|.+|+|||||+|+|++.......+...+|.+....... .++..+.++||||+..... ....+.+ ..++.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE-YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE-ECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 467999999999999999999987644445555555544322222 2456789999999754211 1122222 22345
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------C---CCCCeE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------V---TEEYDL 417 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------~---~~~~~v 417 (505)
.+..+|++++|+|++++..... ..+...+... ..|+++|+||+|+...... . ...+++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQD-LRIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhH-HHHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 5678999999999998865432 2233333322 2499999999999765211 0 135799
Q ss_pred EEeccCcccHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~ 437 (505)
++||+++.|++++++.+.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 75
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.71 E-value=1.6e-16 Score=144.94 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|+|+.... ..++..++.+......... ....+.++||||... ...+ .-..+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~~~~--~~~~~~~ 71 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED------YAAI--RDNYHRS 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhh------hhHH--HHHHhhc
Confidence 789999999999999999997642 2333333332222111122 346789999999432 1112 1234567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
+|.+++|+|++++.+......+...+..... ....|+++|+||+|+....... ...+++++||++|.|
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (164)
T cd04139 72 GEGFLLVFSITDMESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQN 149 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCC
Confidence 8999999999987655444444443333311 1236999999999997632111 035799999999999
Q ss_pred HHHHHHHHHHHHh
Q psy50 427 LAQLKEKVQDMIL 439 (505)
Q Consensus 427 i~eL~~~I~~~l~ 439 (505)
++++++.|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T cd04139 150 VEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.71 E-value=1.8e-16 Score=144.99 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|+|++.... ....+..+.+........ .....+.++||||... .. ......++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~--~~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER------FR--TLTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-cccCCcccceEEEEEEEECCEEEEEEEEECCCchh------hh--hhhHHHhCC
Confidence 6899999999999999999987532 111111222211111111 2346789999999421 00 111233567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCcccH
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTGL 427 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~gi 427 (505)
+|++++|+|++++.+......+...+..... ....|+++|+||+|+....... ...+++++||++|.|+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYST--NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGV 150 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 9999999999988776655555555554432 2235899999999997333211 1457999999999999
Q ss_pred HHHHHHHHHH
Q psy50 428 AQLKEKVQDM 437 (505)
Q Consensus 428 ~eL~~~I~~~ 437 (505)
+++++.+.+.
T Consensus 151 ~~~~~~~~~~ 160 (161)
T cd01863 151 QQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 77
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.71 E-value=9.4e-17 Score=147.92 Aligned_cols=151 Identities=14% Similarity=0.155 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+++++... ..+++..++........... ....+.+|||||...... ......+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~ 71 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT-------EQLERSIRW 71 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc-------chHHHHHHh
Confidence 48999999999999999998653 22333222211111111121 234688999999542100 112345677
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc-
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT- 425 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~- 425 (505)
+|++++|+|++++.+.+....+...+..... .....|+++|+||+|+....... ...+++++||++|.
T Consensus 72 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 150 (165)
T cd04146 72 ADGFVLVYSITDRSSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYD 150 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCch
Confidence 9999999999998777666667776666531 01235999999999986443211 14578999999995
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|++++++.|.+.+
T Consensus 151 ~v~~~f~~l~~~~ 163 (165)
T cd04146 151 GVHSVFHELCREV 163 (165)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998765
No 78
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.71 E-value=2.5e-16 Score=144.10 Aligned_cols=148 Identities=17% Similarity=0.151 Sum_probs=100.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCC-ccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLV-PRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~-~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
.+|+++|++|||||||+|+|++..... .......+.. ...... .....+.+|||||.. .+.. ....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 70 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQE---------RYRSLAPMY 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchH---------HHHHHHHHH
Confidence 479999999999999999999876332 1111111111 111111 235678899999932 1211 1234
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++.+......+...+..... ...|+++++||+|+....... ...+++++||++
T Consensus 71 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd01860 71 YRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKT 147 (163)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCC
Confidence 5679999999999988766666666665555432 235899999999987433211 145799999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|.|+++++++|.+.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 79
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=8.4e-17 Score=181.60 Aligned_cols=157 Identities=22% Similarity=0.221 Sum_probs=114.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~ 353 (505)
..+.|+|+|+||||||||+|+|++.....+.+.++.|.+.......+ .+..+.+|||||+.... ..+...+ ..+...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV-EGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHH
Confidence 45789999999999999999999986556677888887754433322 45689999999976421 2333333 334566
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccH
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGL 427 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi 427 (505)
+..||++++|+|+++..... ...+.+.|+..+ +|+++|+||+|+....... .....+++||++|.|+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~~~------~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTST-DERIVRMLRRAG------KPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGV 424 (712)
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHhcC------CCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCc
Confidence 78899999999998764433 345666666433 5999999999986532211 1335789999999999
Q ss_pred HHHHHHHHHHHhh
Q psy50 428 AQLKEKVQDMILK 440 (505)
Q Consensus 428 ~eL~~~I~~~l~~ 440 (505)
++|+++|.+.+..
T Consensus 425 ~eLl~~i~~~l~~ 437 (712)
T PRK09518 425 GDLLDEALDSLKV 437 (712)
T ss_pred hHHHHHHHHhccc
Confidence 9999999998754
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.71 E-value=3.1e-16 Score=144.63 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|+|++.... .......+.+........+ ....+.+|||||... ...+ ....++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~--~~~~~~~ 72 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER------FQSL--GVAFYRG 72 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH------HHhH--HHHHhcC
Confidence 6899999999999999999987521 1111111112221112122 345678999999421 1111 2234667
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHH-HHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccCc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDET-LQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATRG 424 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~-L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~g 424 (505)
+|++++|+|++++........+... +...........|+++|+||+|+....... ...+++++||++|
T Consensus 73 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 152 (172)
T cd01862 73 ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEA 152 (172)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCC
Confidence 9999999999987665444444332 333322222246999999999998432211 1357999999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|++++++.|.+.+.+
T Consensus 153 ~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 153 INVEQAFETIARKALE 168 (172)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 81
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=1.4e-16 Score=147.91 Aligned_cols=148 Identities=20% Similarity=0.132 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc---cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM---LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~---~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
+|+++|.+|||||||+++++..... .. ...|......... ......+.+|||+|... ...+.+ ..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~------~~~ 70 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE--KK-YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK--FGGLRD------GYY 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CC-CCCceeeEEEEEEEEECCEEEEEEEEECCCChh--hccccH------HHh
Confidence 6899999999999999999865311 11 1122211111111 12346789999999532 112222 234
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEeccCccc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISATRGTG 426 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA~~g~g 426 (505)
..+|++++|+|++++.+......+...+....- ..|+++|+||+|+....... ...+++++||++|.|
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 146 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYN 146 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 579999999999988776655555555554321 36999999999997433211 135799999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy50 427 LAQLKEKVQDMILK 440 (505)
Q Consensus 427 i~eL~~~I~~~l~~ 440 (505)
+++++++|.+.+.+
T Consensus 147 v~~~f~~l~~~~~~ 160 (166)
T cd00877 147 FEKPFLWLARKLLG 160 (166)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999988754
No 82
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=1.9e-16 Score=149.31 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=97.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc--CCcceEEEEeeeeeeecCCCCCcchhhhhH-H
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML--PNRLRILYVDTIGFISNIPTTLLEPFKVTL-E 352 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~--~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl-e 352 (505)
..+|+++|++|||||||+++++..... ...+..+.+........ ..+..+.+|||+|.- .|...+ .
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~ 71 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE---------KLRPLWKS 71 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcH---------hHHHHHHH
Confidence 357999999999999999999876522 22222222221111111 145789999999932 222222 2
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C-C--CCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V-T--EEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~-~--~~~~v~ 418 (505)
.+..+|++++|+|++++........+...+.... .....|+++|+||+|+...... . . ..++++
T Consensus 72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFS--ENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQP 149 (183)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh--hcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEE
Confidence 3567999999999998755443333332222211 1123699999999998643210 0 0 124789
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+||++|.|+++++++|.+.+.+
T Consensus 150 ~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 150 ACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred eecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988854
No 83
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=3e-16 Score=146.39 Aligned_cols=150 Identities=22% Similarity=0.204 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcccee-eeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhh-hhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-FATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFK-VTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i 354 (505)
+|+++|.+|||||||++++.+... ...+. ..+.+........ .....+.+|||+|.. .|. .....+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE---------RFKCIASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHhhHHHHh
Confidence 689999999999999999998752 22221 1112222121111 224678999999942 121 123446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------------CCCCeEEEecc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------------TEEYDLLISAT 422 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------~~~~~v~iSA~ 422 (505)
+.+|++++|+|++++.+......|...+.....+. ..|+++|+||+|+....... ...+++++||+
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 148 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSAL 148 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECC
Confidence 78999999999998766665555555443322221 24799999999986543211 03468999999
Q ss_pred CcccHHHHHHHHHHHHhh
Q psy50 423 RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~ 440 (505)
+|.|++++++.|.+.+.+
T Consensus 149 ~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 149 SGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 84
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=9.2e-17 Score=146.76 Aligned_cols=143 Identities=22% Similarity=0.212 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ 356 (505)
+|+++|++|||||||+|++++..... .. .|...............+.++||+|... +.. ....+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~--~t~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TI--PTVGFNVEMLQLEKHLSLTVWDVGGQEK---------MRTVWKCYLEN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--cc--CccCcceEEEEeCCceEEEEEECCCCHh---------HHHHHHHHhcc
Confidence 47999999999999999999876322 11 2222222222234567899999999421 211 1234667
Q ss_pred hceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------CC-----CCCeEEEec
Q psy50 357 ADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------VT-----EEYDLLISA 421 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~~-----~~~~v~iSA 421 (505)
+|++++|+|++++....... .+.++++.... ...|+++|+||+|+...... .. ..+++++||
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa 144 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHI---KGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSA 144 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhh---cCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEeccc
Confidence 99999999999876433322 23333332222 23599999999998542110 00 125889999
Q ss_pred cCcccHHHHHHHHHH
Q psy50 422 TRGTGLAQLKEKVQD 436 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~ 436 (505)
++|+|+++++++|.+
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999999854
No 85
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=9.4e-17 Score=147.00 Aligned_cols=142 Identities=24% Similarity=0.236 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ 356 (505)
+|+++|++|||||||+++|+...... . ..|......... ..+..+.+|||||... |.. ....+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~--~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~ 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--T--IPTIGFNVETVT-YKNLKFQVWDLGGQTS---------IRPYWRCYYSN 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--c--CCccCcCeEEEE-ECCEEEEEEECCCCHH---------HHHHHHHHhcC
Confidence 48999999999999999997664321 1 223222222221 2457899999999421 221 2234667
Q ss_pred hceeEEEeeCCCCChHHH-HHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------C--C-----CCCeEEEecc
Q psy50 357 ADIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------V--T-----EEYDLLISAT 422 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~-~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~--~-----~~~~v~iSA~ 422 (505)
+|++++|+|++++..... .+.+...++..... ..|+++|+||+|+...... . . ..+++++||+
T Consensus 67 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 143 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELK---GAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAI 143 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhc---CCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeecc
Confidence 999999999998654322 23333344433222 3599999999998653210 0 0 1259999999
Q ss_pred CcccHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQD 436 (505)
Q Consensus 423 ~g~gi~eL~~~I~~ 436 (505)
+|.|+++++++|.+
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=2.4e-16 Score=144.05 Aligned_cols=146 Identities=18% Similarity=0.147 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc---CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML---PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~---~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
+|+++|.+|+|||||+|++++.... ....+..+.+........ .....+.+|||||.. .+.. ....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE---------EFDAITKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH---------HHHHhHHHH
Confidence 6999999999999999999986422 111111122221111111 235679999999932 1211 2344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
++.+|.+++|+|++++.+......+...+... . ...|+++|+||+|+....... ...+++++||++
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~-~---~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 147 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKVEAE-C---GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKD 147 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-C---CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 67899999999999887665555555444432 1 235999999999997643321 145799999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
|.|+++++++|.+.
T Consensus 148 ~~~v~~l~~~l~~~ 161 (162)
T cd04106 148 DFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998753
No 87
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.70 E-value=2.9e-16 Score=150.12 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
...+|+++|++|||||||++++.+.... ....+..+.+......... ....+.+|||||... +.. ...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER---------FRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchh---------HHHHHHH
Confidence 4578999999999999999999986521 1111111122211111112 235788999999321 211 233
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~ 422 (505)
.+..+|++++|+|++++.+......+...+.... ...|+++|+||+|+....... ...+++++||+
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 150 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAK 150 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence 4667999999999999876665555555544332 135999999999987643321 14578999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|+++++++|.+.+...
T Consensus 151 ~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 151 ENINVEEMFNCITELVLRA 169 (199)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 88
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.70 E-value=3.1e-16 Score=146.50 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=103.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++.+.... ..+..+.-+........ .....+.+|||+|... ...+ ....+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~l--~~~~~~ 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE------FTAM--RDQYMR 72 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh------hHHH--hHHHhh
Confidence 47999999999999999999876532 11111111101111111 2235788999999422 1111 123466
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++.+......+...+...... ...|+++|+||+|+....... ...+++++||++|.
T Consensus 73 ~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~--~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 73 CGEGFIICYSVTDRHSFQEASEFKKLITRVRLT--EDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRH 150 (172)
T ss_pred cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCC--CCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCC
Confidence 799999999999998877776666667665321 236999999999986543221 14579999999999
Q ss_pred cHHHHHHHHHHHHhh
Q psy50 426 GLAQLKEKVQDMILK 440 (505)
Q Consensus 426 gi~eL~~~I~~~l~~ 440 (505)
|+++++++|.+.+.+
T Consensus 151 ~v~~~f~~l~~~~~~ 165 (172)
T cd04141 151 YIDDAFHGLVREIRR 165 (172)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 89
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=1.7e-16 Score=147.82 Aligned_cols=148 Identities=25% Similarity=0.225 Sum_probs=96.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
+....+|+++|++|||||||+|+|++...... ..|.......... ++..+.+|||||... ...+ ...
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~------~~~~--~~~ 77 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTI----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT------LRPY--WRN 77 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEE-CCEEEEEEECCCCHH------HHHH--HHH
Confidence 34557899999999999999999998742211 1122111222222 367889999999321 1111 223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------C-------CCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------V-------TEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~-------~~~~~v~ 418 (505)
.+..+|++++|+|++++....... .+..++..... ...|+++|+||+|+...... . ...++++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERL---AGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh---cCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEe
Confidence 466899999999999875544332 22233332111 23699999999998653211 0 1236999
Q ss_pred EeccCcccHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~ 436 (505)
+||++|.|+++++++|.+
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999998853
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.70 E-value=3.7e-16 Score=142.08 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|+|||||+|+|++.... .......+.+........ .....+.+|||+|... +..+ .-..+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~------~~~~~~~ 72 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER--YHAL------GPIYYRD 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHH--HHHh------hHHHhcc
Confidence 6899999999999999999987532 111111111111111111 2245788999999321 1111 1123457
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||+++.|
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g 149 (162)
T cd04123 73 ADGAILVYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG 149 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999887766555555555544322 35999999999987543211 145689999999999
Q ss_pred HHHHHHHHHHHH
Q psy50 427 LAQLKEKVQDMI 438 (505)
Q Consensus 427 i~eL~~~I~~~l 438 (505)
+++++++|.+.+
T Consensus 150 i~~~~~~l~~~~ 161 (162)
T cd04123 150 IEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 91
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=1.4e-16 Score=179.90 Aligned_cols=158 Identities=23% Similarity=0.218 Sum_probs=115.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCC-cchhh--hhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTL-LEPFK--VTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~l-ie~f~--~tl 351 (505)
..++|+++|.||||||||+|+|++.....+.+++++|.+........ ++..+.++||||+........ .+.+. .+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 45899999999999999999999987656778888888765433323 466788999999865432211 22231 245
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CCCCCeEE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VTEEYDLL 418 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~~~~~v~ 418 (505)
..+..+|++++|+|++++....... +...+...+ +|+++|+||+|+...... ....++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~~~------~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVDAG------RALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHcC------CCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEE
Confidence 5678899999999999886654333 333333332 599999999999754321 11356799
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+||++|.|+++|++.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.70 E-value=1.7e-16 Score=147.66 Aligned_cols=145 Identities=19% Similarity=0.143 Sum_probs=94.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
...+|+++|++|||||||+++|...... ...+..+.+ ..... .....+.+|||+|.. .+.. ....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~--~~~~~-~~~~~~~l~Dt~G~~---------~~~~~~~~~ 73 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFN--VETVT-YKNVKFNVWDVGGQD---------KIRPLWRHY 73 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccc--eEEEE-ECCEEEEEEECCCCH---------HHHHHHHHH
Confidence 4578999999999999999999865422 111111222 11111 246789999999942 1222 1234
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------C---C--CCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------V---T--EEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~---~--~~~~v~i 419 (505)
+..||++++|+|++++....... .+.+.+..... ...|+++|+||+|+...... . . ..+++++
T Consensus 74 ~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 74 YTGTQGLIFVVDSADRDRIDEARQELHRIINDREM---RDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred hccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhh---cCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEe
Confidence 67899999999999876543322 23333332222 23599999999998643210 0 0 1257899
Q ss_pred eccCcccHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQD 436 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~ 436 (505)
||++|.|+++++++|.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999864
No 93
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=1.3e-16 Score=144.75 Aligned_cols=153 Identities=27% Similarity=0.274 Sum_probs=101.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.......+...++..... ......+..+.++||||+..... ...+.+ ......+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKK-KLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchH-HHHHHHHHHHHHHH
Confidence 45799999999999999999998763333333333322111 11123457789999999754211 111222 1234557
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------CCCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------VTEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~~~~~~v~iSA~~ 423 (505)
..+|++++|+|++++.... ...+...+...+ .|+++|+||+|+...... ....+++++|+++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~~------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKKSK------TPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHHhC------CCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 7899999999999873322 334445554432 389999999999743221 1135789999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
+.|+++|++.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999765
No 94
>PRK04213 GTP-binding protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=150.99 Aligned_cols=153 Identities=24% Similarity=0.279 Sum_probs=99.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeee--ecCCCCCcchhhhh--
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI--SNIPTTLLEPFKVT-- 350 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi--~~lp~~lie~f~~t-- 350 (505)
..++|+++|++|||||||+|+|++.. ..++..+++|.+..... ...+.+|||||+. ...+....+.++..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~-----~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYD-----WGDFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEe-----ecceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 45789999999999999999999876 44555666666543211 1268999999962 21121223344332
Q ss_pred --HH-HHHhhceeEEEeeCCCCChH----------HHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-C------
Q psy50 351 --LE-DAMLADIIIHVVDVSNPDYL----------QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE-R------ 410 (505)
Q Consensus 351 --le-~i~~ADliL~VvD~s~~~~~----------~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~-~------ 410 (505)
+. .+..+|++++|+|.++.... .....+...+...+ .|+++|+||+|+..... .
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~p~iiv~NK~Dl~~~~~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG------IPPIVAVNKMDKIKNRDEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC------CCeEEEEECccccCcHHHHHHHHHH
Confidence 11 33457899999998653110 11223344444332 49999999999865431 0
Q ss_pred -CCC--------CCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 -VTE--------EYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 -~~~--------~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
... .+++++||++| |+++++++|.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 001 14799999999 999999999988743
No 95
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.69 E-value=4.5e-16 Score=143.47 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|+|||||++++.+.... ....+..+.+......... ....+.+|||+|... ...+ ....+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~------~~~~--~~~~~~~ 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER------YQTI--TKQYYRR 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh------HHhh--HHHHhcC
Confidence 6899999999999999999876532 1111111112211112222 235788999999321 1111 2234567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
+|++++|+|++++.+.+....+.+.+..... ...|+++|+||+|+....... ...+++++||++|.|
T Consensus 73 ~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 149 (161)
T cd04117 73 AQGIFLVYDISSERSYQHIMKWVSDVDEYAP---EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSN 149 (161)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999998776665555555544421 235999999999986544321 145799999999999
Q ss_pred HHHHHHHHHHH
Q psy50 427 LAQLKEKVQDM 437 (505)
Q Consensus 427 i~eL~~~I~~~ 437 (505)
+++++.+|.+.
T Consensus 150 v~~~f~~l~~~ 160 (161)
T cd04117 150 IKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 96
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=5.2e-16 Score=150.12 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=104.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
.+|+++|.+|||||||+|+|++....... .+..+.+......... ....+.+|||+|... ...+ ....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~ 73 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER------FRSI--TRSYY 73 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchh------HHHH--HHHHh
Confidence 57999999999999999999987532221 1222223322222222 246789999999321 1111 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++|
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 151 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTG 151 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCC
Confidence 779999999999998776655555444332211 11247899999999976433211 357999999999
Q ss_pred ccHHHHHHHHHHHHhhhc
Q psy50 425 TGLAQLKEKVQDMILKAT 442 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~~ 442 (505)
.|++++++.|.+.+.+..
T Consensus 152 ~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 152 DNVEEAFELLTQEIYERI 169 (211)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887653
No 97
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=5.4e-16 Score=146.46 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh-hhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK-VTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i 354 (505)
.+|+++|.+|||||||+|++++.... ....+..+.+......... ....+.+|||+|... +. .....+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~---------~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER---------FRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH---------HHhhHHHHc
Confidence 36999999999999999999987532 1111111222222222222 245778999999421 11 123345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+......|...+..+... ..|+++|+||+|+....... ...+++++||++|
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 147 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQS 147 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 6799999999999887766555555555544322 25899999999987543211 1347999999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|++++++.|.+.+...
T Consensus 148 ~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 148 INVEEAFILLVKLIIKR 164 (188)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988653
No 98
>PTZ00369 Ras-like protein; Provisional
Probab=99.69 E-value=2.9e-16 Score=148.73 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=102.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|++|||||||++++.+.... ..+..+.-+........ .....+.+|||+|.-. ...+ ....+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~l--~~~~~ 74 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE------YSAM--RDQYM 74 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc------chhh--HHHHh
Confidence 468999999999999999999976522 12111111111111112 2345678999999422 1111 12345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+.+....+...+..... ..+.|+++|+||+|+....... ...+++++||++|
T Consensus 75 ~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~ 152 (189)
T PTZ00369 75 RTGQGFLCVYSITSRSSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQR 152 (189)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCC
Confidence 679999999999998876666666655544321 1235999999999986533211 0357899999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+++++++|.+.+.+.
T Consensus 153 ~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 153 VNVDEAFYELVREIRKY 169 (189)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888653
No 99
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.69 E-value=6.3e-17 Score=170.31 Aligned_cols=189 Identities=25% Similarity=0.279 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc--------------------C---CcceEEEEeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML--------------------P---NRLRILYVDTI 333 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~--------------------~---~~~~v~l~DT~ 333 (505)
.+|+|||.||||||||+|+|++.. +.+++++|+|++++...... . ...++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 479999999999999999999986 56789999999887754321 1 12568899999
Q ss_pred eeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCC-------------ChHHHHHH----------------------
Q psy50 334 GFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNP-------------DYLQQKQH---------------------- 377 (505)
Q Consensus 334 Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~-------------~~~~~~~~---------------------- 377 (505)
|++.... ..+.+ ...+..++.||+++||+|++.. +...+.+.
T Consensus 81 Gl~~ga~--~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 81 GLVPGAH--EGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred CcCCCcc--chhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9976322 12223 3567889999999999999731 11111100
Q ss_pred --------------------------HHHHHHhcCcc------------------cccCccEEEEEeCCCCCCCCCC---
Q psy50 378 --------------------------VDETLQHLELE------------------EKILEHVLVVGNKVDAVPPGER--- 410 (505)
Q Consensus 378 --------------------------v~~~L~~lg~~------------------~~~~~p~IlV~NKiDl~~~~~~--- 410 (505)
+.+.|++.|.+ -...+|+++|+||+|+......
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHH
Confidence 11112211111 0124899999999997642210
Q ss_pred ---CCCCCeEEEeccCcccHHH-HHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEe
Q psy50 411 ---VTEEYDLLISATRGTGLAQ-LKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVM 486 (505)
Q Consensus 411 ---~~~~~~v~iSA~~g~gi~e-L~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i 486 (505)
..+..++++||+.+.++++ |++.+.+++ |..+++|+.+.++++ +.+ +.++|
T Consensus 239 i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~l-----------------p~~p~~~~~d~ltd~------~~r--~~E~I 293 (396)
T PRK09602 239 LKEEKYYIVVPTSAEAELALRRAAKAGLIDYI-----------------PGDSDFEILGELSEK------QKK--ALEYI 293 (396)
T ss_pred HHhcCCCcEEEEcchhhhhHHHHHHHhHHhhC-----------------CCCCccCccccCCHH------HHH--HHHHH
Confidence 1235789999999999999 889998887 445678888877764 222 34556
Q ss_pred cHHHHHHH
Q psy50 487 TDVIMNKF 494 (505)
Q Consensus 487 ~~~~~~~~ 494 (505)
| ++|..+
T Consensus 294 R-k~l~~~ 300 (396)
T PRK09602 294 R-EVLKKY 300 (396)
T ss_pred H-HHHHHh
Confidence 6 555544
No 100
>KOG0084|consensus
Probab=99.69 E-value=2.7e-16 Score=146.69 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=119.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
...+|.|+|.+|+|||.|+.++.+.... ..-....+.|+..+.+.+. ...++++|||+| .|.|++ +..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~-e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG---------QERFrtit~s 77 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFT-ESYISTIGVDFKIRTVELDGKTIKLQIWDTAG---------QERFRTITSS 77 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcc-hhhcceeeeEEEEEEeeecceEEEEEeeeccc---------cHHHhhhhHh
Confidence 3568999999999999999999987522 2223333456665555443 457899999999 356643 677
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCC-eEEEec
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEY-DLLISA 421 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~-~v~iSA 421 (505)
.++.|+.||+|+|+++..++.....|...+++....+ .|.++|+||+|+........ ..+ ++++||
T Consensus 78 yYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~---v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSA 154 (205)
T KOG0084|consen 78 YYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN---VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSA 154 (205)
T ss_pred hccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC---CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeeccc
Confidence 8899999999999999888887777777777776544 49999999999976554321 344 999999
Q ss_pred cCcccHHHHHHHHHHHHhhh
Q psy50 422 TRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~~ 441 (505)
+++.|+++.+..|...+...
T Consensus 155 K~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CCccCHHHHHHHHHHHHHHh
Confidence 99999999999999988654
No 101
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=5.2e-16 Score=150.59 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=106.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+++|++|||||||+++|++.... ....+..+.+......... ....+.+|||+|.. .|.. ....
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 81 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE---------RYRAITSAY 81 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 468999999999999999999987532 2222222233322222222 34688999999932 1211 2334
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
++.+|++++|+|++++.+.+....|...+..... ...|+++|+||+|+....... ...+++++||++
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~ 158 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD---SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALE 158 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 6779999999999988777666666665554422 235999999999986543321 146799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|++++++.|.+.+.+.
T Consensus 159 g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 159 ATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988663
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=3.9e-16 Score=144.35 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|.+|||||||+|+|.+...+ ..+..+.-+.+...........+.+|||+|... ... .....+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----~~~---~~~~~~~~a 71 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ-----DRA---NLAAEIRKA 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCchh-----hhH---HHhhhcccC
Confidence 6899999999999999999987532 222211111111111123457889999999432 111 123345789
Q ss_pred ceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC----C---------C-CCCeEEEecc
Q psy50 358 DIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER----V---------T-EEYDLLISAT 422 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~----~---------~-~~~~v~iSA~ 422 (505)
|++++|+|++++.+.... ..|...++.... ..|+++|+||+|+.+.... . . ..+++++||+
T Consensus 72 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 147 (166)
T cd01893 72 NVICLVYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAK 147 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccc
Confidence 999999999988776654 345666665431 3599999999999764431 0 0 1378999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQDMI 438 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l 438 (505)
+|.|++++++.+.+.+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999998876
No 103
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.69 E-value=5.3e-16 Score=139.57 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh-hhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK-VTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i~ 355 (505)
+|+++|++|||||||+|+|++...... .....+.+......... ....+.++||||... +. .....+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~ 71 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER---------FRSITPSYYR 71 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH---------HHHHHHHHhc
Confidence 689999999999999999998763322 22222222222222221 347789999999521 11 1234466
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++........+...+..... ...|+++|+||+|+....... ...+++++||+++.
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 148 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGE 148 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCC
Confidence 79999999999987655555555555554432 235999999999996322211 14689999999999
Q ss_pred cHHHHHHHHH
Q psy50 426 GLAQLKEKVQ 435 (505)
Q Consensus 426 gi~eL~~~I~ 435 (505)
|+++++++|.
T Consensus 149 ~i~~~~~~i~ 158 (159)
T cd00154 149 NVEELFQSLA 158 (159)
T ss_pred CHHHHHHHHh
Confidence 9999999885
No 104
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=6.7e-16 Score=146.99 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=106.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCcccee-eeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-FATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
..+|+++|..|||||||++++...... .++. ..+.+........ .....+.+|||+|.- .+.. ...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~---------~~~~l~~~ 74 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG---------RFCTIFRS 74 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHH
Confidence 468999999999999999999976421 1111 1122221111111 124678899999932 2222 123
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~ 422 (505)
.++.||++++|+|++++.+.+....|.+.+.... + ..|+++|+||+|+....... ...+++++||+
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~---~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk 150 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P---GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPL 150 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C---CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCC
Confidence 4578999999999999988877777777665542 2 35999999999996533221 14579999999
Q ss_pred CcccHHHHHHHHHHHHhhhcC
Q psy50 423 RGTGLAQLKEKVQDMILKATG 443 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~~~ 443 (505)
+|.|+++++++|.+.+....+
T Consensus 151 ~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 151 CNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999988765443
No 105
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.68 E-value=4e-16 Score=145.74 Aligned_cols=144 Identities=22% Similarity=0.184 Sum_probs=95.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i 354 (505)
..+|+++|++|+|||||+++|++...... ..|...+..... .+...+.++||||.. .+.. ....+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~D~~G~~---------~~~~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIV-YKNIRFLMWDIGGQE---------SLRSSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEE-ECCeEEEEEECCCCH---------HHHHHHHHHh
Confidence 46899999999999999999987653322 122222222222 246789999999942 1222 12346
Q ss_pred HhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------C-------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------V-------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~-------~~~~~v~iS 420 (505)
..+|++++|+|++++...... ..+..+++..+. ...|+++++||+|+...... . ...+++++|
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~---~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 157 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDL---RKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh---cCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence 789999999999987543322 233444443322 23599999999998643210 0 012589999
Q ss_pred ccCcccHHHHHHHHHH
Q psy50 421 ATRGTGLAQLKEKVQD 436 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~ 436 (505)
|++|.|+++++++|.+
T Consensus 158 A~~g~gi~e~~~~l~~ 173 (174)
T cd04153 158 ALTGEGLPEGLDWIAS 173 (174)
T ss_pred cCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=3.4e-16 Score=144.23 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhh-HHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVT-LEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~t-le~i~~ 356 (505)
+|+++|.+|||||||++++...... . + ..|......... .....+.+|||+|.. .+... ...++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~-~-~pt~g~~~~~~~-~~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 67 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--T-T-IPTIGFNVETVE-YKNISFTVWDVGGQD---------KIRPLWRHYFQN 67 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--c-c-CCCCCcceEEEE-ECCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 6899999999999999999654422 1 1 222222221111 246789999999942 12222 234678
Q ss_pred hceeEEEeeCCCCChHHHHHH-HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------C-----CCCeEEEecc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------T-----EEYDLLISAT 422 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~-v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~-----~~~~v~iSA~ 422 (505)
||++++|+|++++.+...... +..++..-.. ...|+++|+||+|+....... . ...++++||+
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak 144 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDEL---RDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCAT 144 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHh---cCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCC
Confidence 999999999998765443332 2333322111 235999999999986432110 0 1236789999
Q ss_pred CcccHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQD 436 (505)
Q Consensus 423 ~g~gi~eL~~~I~~ 436 (505)
+|.|+++++++|.+
T Consensus 145 ~g~gv~~~~~~l~~ 158 (159)
T cd04150 145 SGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999854
No 107
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.68 E-value=1e-15 Score=144.87 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee-eeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL-DVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl-d~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|+|||||++++++.... ...+..+.- +........+ ....+.+|||+|... ...+. ...+.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~--~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER------YEAMS--RIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh------hhhhh--HhhcC
Confidence 6999999999999999999986522 222221111 1111112222 235677999999421 11111 12245
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---C-----------CCCCeEEEec
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---V-----------TEEYDLLISA 421 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---~-----------~~~~~v~iSA 421 (505)
.+|++++|+|++++.+.+....+...+.... ...|+++|+||+|+...... . ...+++++||
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 148 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSS 148 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeC
Confidence 7999999999998876655555555555432 13599999999998653210 0 0356899999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
++|.|+++|++.|.+.+.+
T Consensus 149 ~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 149 KTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988854
No 108
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=4.7e-16 Score=147.12 Aligned_cols=155 Identities=22% Similarity=0.259 Sum_probs=103.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeec-CCCCCcchhhhh-
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN-IPTTLLEPFKVT- 350 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~-lp~~lie~f~~t- 350 (505)
...+.|+++|.+|||||||+|+|++.. .....+....|.++.... .+.++.++||||+... .+....+.+...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 467899999999999999999999864 233344445555443221 1367999999997431 121222222221
Q ss_pred ---HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------C--CCC
Q psy50 351 ---LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------T--EEY 415 (505)
Q Consensus 351 ---le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~--~~~ 415 (505)
+.....++++++|+|++++.... ...+.+.+...+ .|+++++||+|+....+.. . ..+
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~i~~~l~~~~------~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKEL-DLQMIEWLKEYG------IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHH-HHHHHHHHHHcC------CcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 22223347888999988765433 233445555443 4899999999997643210 0 357
Q ss_pred eEEEeccCcccHHHHHHHHHHHHh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
++++||++|.|++++++.|.+.+.
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998773
No 109
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=2e-16 Score=142.14 Aligned_cols=130 Identities=23% Similarity=0.244 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|.+|||||||+|+|++..... ..|.... .. ..++||||... ...+.++.....++.|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~-----~~t~~~~-----~~----~~~iDt~G~~~----~~~~~~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY-----KKTQAVE-----YN----DGAIDTPGEYV----ENRRLYSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc-----ccceeEE-----Ec----CeeecCchhhh----hhHHHHHHHHHHhhcC
Confidence 68999999999999999999875211 1111111 11 15899999632 1112344444567899
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcccH
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTGL 427 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~gi 427 (505)
|++++|+|++++.+... ..+. ..++ .|+++|+||+|+....... ...+++++||++|.|+
T Consensus 64 d~vilv~d~~~~~s~~~-~~~~---~~~~------~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 64 DVIALVQSATDPESRFP-PGFA---SIFV------KPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred CEEEEEecCCCCCcCCC-hhHH---Hhcc------CCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 99999999998876432 2222 2221 3899999999986532211 0237899999999999
Q ss_pred HHHHHHHH
Q psy50 428 AQLKEKVQ 435 (505)
Q Consensus 428 ~eL~~~I~ 435 (505)
++++++|.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99998874
No 110
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=2.8e-16 Score=160.92 Aligned_cols=159 Identities=26% Similarity=0.302 Sum_probs=110.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-----------------------CCcceEEEEeeeee
Q psy50 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-----------------------PNRLRILYVDTIGF 335 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-----------------------~~~~~v~l~DT~Gf 335 (505)
|+|||.||||||||+|+|++.. +.+++++|+|.+++...... ....++.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999987 56899999999987654332 12367999999999
Q ss_pred eecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCC-------------ChHHHHHHH-----------------------
Q psy50 336 ISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNP-------------DYLQQKQHV----------------------- 378 (505)
Q Consensus 336 i~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~-------------~~~~~~~~v----------------------- 378 (505)
+.... ....+ ...+..++.||+++||+|++.. +...+.+.+
T Consensus 80 v~ga~--~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAH--EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCcc--chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75321 12223 3567889999999999999741 101111111
Q ss_pred -------------------------HHHHHhcCcc------------------cccCccEEEEEeCCCCCCCCCC-----
Q psy50 379 -------------------------DETLQHLELE------------------EKILEHVLVVGNKVDAVPPGER----- 410 (505)
Q Consensus 379 -------------------------~~~L~~lg~~------------------~~~~~p~IlV~NKiDl~~~~~~----- 410 (505)
.++|+..... -...+|+|+|+||+|+....+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~ 237 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR 237 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH
Confidence 1111110000 0124699999999998644321
Q ss_pred --CCCCCeEEEeccCcccHHHHHH-HHHHHHhh
Q psy50 411 --VTEEYDLLISATRGTGLAQLKE-KVQDMILK 440 (505)
Q Consensus 411 --~~~~~~v~iSA~~g~gi~eL~~-~I~~~l~~ 440 (505)
....+++++||+.+.|+++|.+ .+.+++++
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1245799999999999999998 69999865
No 111
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=147.28 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=101.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|++|||||||+++|++........ ..+.+......... ....+.+|||||... ...+ ....+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~--~~~~~ 83 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAP--TIGVDFKIKQLTVGGKRLKLTIWDTAGQER------FRTL--TSSYY 83 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCC--CceeEEEEEEEEECCEEEEEEEEECCCchh------hHHH--HHHHH
Confidence 4689999999999999999999865321111 11122222222222 246789999999422 1111 23346
Q ss_pred HhhceeEEEeeCCCCChHHHHHH-HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~-v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+.+|++++|+|++++.+...... +...+..... ....|+++|+||+|+....... ...+++++||++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~--~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~ 161 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYST--NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKT 161 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 67999999999998876654433 3344443321 1235899999999987543321 135689999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|++++++.|.+.+.+
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 162 RENVEQCFEELALKIME 178 (211)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998854
No 112
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=9.4e-16 Score=144.88 Aligned_cols=149 Identities=12% Similarity=0.101 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeee-eeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA-TLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft-Tld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|||||||++++.+.... .++..+ +.+......... ....+.+|||+|.-. ...+ ....+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~------~~~~--~~~~~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE------FINM--LPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh------HHHh--hHHHCc
Confidence 6899999999999999999876422 222111 112211122222 246789999999321 1111 112456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC---C---CC---------CCCCeEEEe
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG---E---RV---------TEEYDLLIS 420 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~---~---~~---------~~~~~v~iS 420 (505)
.||++++|+|++++.+......|...+...... ..| ++|+||+|+.... . .. ...+++++|
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S 147 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS 147 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence 799999999999988776666666655544321 235 6899999995311 1 00 035689999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|++++++++.+.+.+
T Consensus 148 Ak~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 113
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.67 E-value=7.5e-16 Score=144.26 Aligned_cols=147 Identities=21% Similarity=0.178 Sum_probs=95.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhh-HHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVT-LED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~t-le~ 353 (505)
...+|+++|.+|||||||++++...... ... .|......... .....+.+|||+|.. .+... ...
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~--~t~~~~~~~~~-~~~~~l~l~D~~G~~---------~~~~~~~~~ 77 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTI--PTIGFNVETVT-YKNISFTVWDVGGQD---------KIRPLWRHY 77 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcC--CccccceEEEE-ECCEEEEEEECCCCh---------hhHHHHHHH
Confidence 3478999999999999999999644321 111 12221111111 246789999999942 12222 233
Q ss_pred HHhhceeEEEeeCCCCChHHHHHH-HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------C-------CCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------T-------EEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~-v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~-------~~~~v~i 419 (505)
+..||++++|+|++++.+.+.... +..++..... ...|+++|+||+|+....... . ...++++
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL---RDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPT 154 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh---cCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEe
Confidence 678999999999998765443332 2233332222 235999999999986432110 0 1236689
Q ss_pred eccCcccHHHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l 438 (505)
||++|.|+++++++|.+.+
T Consensus 155 Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 155 CATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 114
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.67 E-value=1.2e-15 Score=141.72 Aligned_cols=150 Identities=18% Similarity=0.135 Sum_probs=101.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh--hHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV--TLED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~--tle~ 353 (505)
.+|+++|++|||||||++++++.... .......+.+......... ....+.+|||+|.. .+.. ....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE---------RFRKSMVQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChH---------HHHHhhHHHh
Confidence 57999999999999999999876522 1111111222222222222 24678999999932 1211 1223
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++.+......|...+...... ...|+++|+||+|+....... ...+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP--NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC--CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 56799999999999988776666666555544321 235999999999986544321 145799999999
Q ss_pred ---cccHHHHHHHHHHHH
Q psy50 424 ---GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 ---g~gi~eL~~~I~~~l 438 (505)
+.|+++++..+.+.+
T Consensus 151 ~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 151 PSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CcCCCCHHHHHHHHHHHh
Confidence 889999999887765
No 115
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.67 E-value=1.1e-15 Score=141.31 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=99.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||++++++.... .......+.+........ .....+.+|||+|.-. ...+ ....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~--~~~~ 74 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER------FRSL--RTPF 74 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH------HHHh--HHHH
Confidence 3468999999999999999999876522 211111122221111111 2346788999999321 1111 2234
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~ 422 (505)
++.+|++++|+|++++.+......+...+... ........|+++|+||+|+....... ...+++++||+
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 154 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAK 154 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECC
Confidence 67799999999999887666555555444332 21112246999999999986322110 12478999999
Q ss_pred CcccHHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQDM 437 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~ 437 (505)
+|.|++++++.+.+.
T Consensus 155 ~~~~v~~~~~~~~~~ 169 (170)
T cd04116 155 DATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 116
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.67 E-value=7.6e-16 Score=137.65 Aligned_cols=149 Identities=25% Similarity=0.227 Sum_probs=102.9
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhcee
Q psy50 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADII 360 (505)
Q Consensus 281 LVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADli 360 (505)
++|++|+|||||+|+|++.......+...+|.+.............+.++||||+....... ..........+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~-~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG-REREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch-hhHHHHHHHHHHhCCEE
Confidence 58999999999999999986544555555555544433333336789999999976532211 10012334556789999
Q ss_pred EEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEeccCcccH
Q psy50 361 IHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISATRGTGL 427 (505)
Q Consensus 361 L~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA~~g~gi 427 (505)
++|+|++++....... +....... ..|+++|+||+|+....... ...+++++||+++.|+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 9999999887654332 22222222 24999999999997654321 1467999999999999
Q ss_pred HHHHHHHHHH
Q psy50 428 AQLKEKVQDM 437 (505)
Q Consensus 428 ~eL~~~I~~~ 437 (505)
++++++|.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 117
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.67 E-value=1.5e-15 Score=148.02 Aligned_cols=147 Identities=22% Similarity=0.132 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|.+|||||||++++....... .. .|......... .....+.+|||+|... ...+ ....+..+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~--~Tig~~~~~~~-~~~~~l~iwDt~G~e~------~~~l--~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TV--STVGGAFYLKQ-WGPYNISIWDTAGREQ------FHGL--GSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CC--CccceEEEEEE-eeEEEEEEEeCCCccc------chhh--HHHHhccC
Confidence 68999999999999999999876321 11 22211111111 1356789999999532 1111 12236789
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC-------------------CCCCC------
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP-------------------GERVT------ 412 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~-------------------~~~~~------ 412 (505)
|++++|+|++++.+......+...+..... ...|+|+|+||+|+... .....
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~---~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTAN---EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 999999999998777655544443433322 23599999999999751 11000
Q ss_pred ----C--------------CCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 413 ----E--------------EYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 413 ----~--------------~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
. .+++++||++|.|+++++..+.+.+..
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1 368999999999999999999988754
No 118
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.66 E-value=4.3e-16 Score=143.93 Aligned_cols=137 Identities=22% Similarity=0.248 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|++|||||||+|+|++.... .. .|..+.. ... .+|||||+....+ +.+......+..|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~----~~~~v~~-----~~~---~~iDtpG~~~~~~----~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-AR----KTQAVEF-----NDK---GDIDTPGEYFSHP----RWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-Cc----cceEEEE-----CCC---CcccCCccccCCH----HHHHHHHHHHhcC
Confidence 6999999999999999999987522 11 1211111 111 1699999754221 1223334557789
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------C-CCCeEEEeccCcccHH
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------T-EEYDLLISATRGTGLA 428 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~-~~~~v~iSA~~g~gi~ 428 (505)
|++++|+|++++..... ..+..++. .+|+++++||+|+...+... . ..+++++||++|+|++
T Consensus 66 d~il~v~d~~~~~s~~~-----~~~~~~~~----~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~ 136 (158)
T PRK15467 66 DMLIYVHGANDPESRLP-----AGLLDIGV----SKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQ 136 (158)
T ss_pred CEEEEEEeCCCcccccC-----HHHHhccC----CCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHH
Confidence 99999999987754311 12222221 25899999999986432110 0 2489999999999999
Q ss_pred HHHHHHHHHHhh
Q psy50 429 QLKEKVQDMILK 440 (505)
Q Consensus 429 eL~~~I~~~l~~ 440 (505)
+|++.|.+.+..
T Consensus 137 ~l~~~l~~~~~~ 148 (158)
T PRK15467 137 QLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHhchh
Confidence 999999988744
No 119
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.66 E-value=1.2e-15 Score=141.15 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=99.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++.+.... ..+..++.+........ .....+.+|||+|... ...+. ...+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~--~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ------FTAMR--ELYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCccc------chhhh--HHHHh
Confidence 36999999999999999999876522 22111111111111111 2346788999999432 11111 12356
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccCc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATRG 424 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~g 424 (505)
.+|.+++|+|++++...+....+...+.... .....|+++|+||+|+....... ...+++++||++|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIK--DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 7999999999998876665555555554431 12236999999999986543211 1257999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy50 425 TGLAQLKEKVQDMI 438 (505)
Q Consensus 425 ~gi~eL~~~I~~~l 438 (505)
.|+++++++|.+.+
T Consensus 150 ~~i~~~f~~i~~~~ 163 (168)
T cd04177 150 TNVDEVFIDLVRQI 163 (168)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998766
No 120
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.66 E-value=8.1e-16 Score=146.08 Aligned_cols=147 Identities=28% Similarity=0.350 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC------CCCccceeeeeeeeeeecccc-------------CCcceEEEEeeeeeeec
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDD------SLVPRNQLFATLDVTTHEGML-------------PNRLRILYVDTIGFISN 338 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~------~~~~~d~~ftTld~t~~~~~~-------------~~~~~v~l~DT~Gfi~~ 338 (505)
.|+++|.+|+|||||+++|++.. .........+|.+.......+ ..+..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 68999999999999999999731 111111223344433222211 126789999999952
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------- 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------- 410 (505)
.+ +...+.....+|.+++|+|+++.......+. .......+ .|+++|+||+|+......
T Consensus 80 ---~~---~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~~~~~~~------~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 80 ---SL---IRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LVIGEILC------KKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred ---HH---HHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HHHHHHcC------CCEEEEEECcccCCHHHHHHHHHHHH
Confidence 12 2333455667899999999987544332222 22333222 489999999999743221
Q ss_pred -----------CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 -----------VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 -----------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
....+++++||++|.|+++|++.|.+.+.
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 01347999999999999999999998873
No 121
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.66 E-value=8.9e-16 Score=142.61 Aligned_cols=147 Identities=21% Similarity=0.203 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|.+|||||||+++|++... .. ...|......... ..+..+.++||||... .. . .....+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~-----~~-~--~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PIPTIGFNVETVE-YKNLKFTIWDVGGKHK-----LR-P--LWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCceeEEEEE-ECCEEEEEEECCCChh-----cc-h--HHHHHhccC
Confidence 478999999999999999998642 21 2233322221111 2467899999999532 11 1 122346779
Q ss_pred ceeEEEeeCCCCChHHHHHHH-HHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------C--------CCCeEEEecc
Q psy50 358 DIIIHVVDVSNPDYLQQKQHV-DETLQHLELEEKILEHVLVVGNKVDAVPPGERV------T--------EEYDLLISAT 422 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v-~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~--------~~~~v~iSA~ 422 (505)
|++++|+|++++........+ ..+++.... ...|+++|+||+|+....... . ...++++||+
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKEL---RDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDAR 144 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhh---CCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCC
Confidence 999999999987654433322 223322222 235999999999986432110 0 1147789999
Q ss_pred CcccHHHHHHHHHHHHhh
Q psy50 423 RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~ 440 (505)
+|.|+++++++|.+.+.+
T Consensus 145 ~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 145 SGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887754
No 122
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=9.5e-16 Score=144.65 Aligned_cols=155 Identities=25% Similarity=0.335 Sum_probs=115.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee-cCCCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS-NIPTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~-~lp~~lie~f~~tl 351 (505)
...+-||++|.+|||||||||+|++.. .+.++..+..|..+..... ...+.++|.|||-. +.|....+.+...+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~----~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV----DDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe----cCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 467899999999999999999999965 3667788888876554321 23388999999843 33444445554433
Q ss_pred HHH----HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC-------------CC
Q psy50 352 EDA----MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT-------------EE 414 (505)
Q Consensus 352 e~i----~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~-------------~~ 414 (505)
.++ ..-..+++++|+.++.... +..+.+++...++ |+++|+||+|.+...+... ..
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~-D~em~~~l~~~~i------~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDL-DREMIEFLLELGI------PVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHH-HHHHHHHHHHcCC------CeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 332 2346788999999887653 5578889988875 8999999999998654311 11
Q ss_pred --CeEEEeccCcccHHHHHHHHHHHHh
Q psy50 415 --YDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 415 --~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.++.+|+.++.|+++|...|.+.+.
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhh
Confidence 2889999999999999999998874
No 123
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.66 E-value=1.4e-15 Score=141.95 Aligned_cols=146 Identities=21% Similarity=0.136 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccc---------------eeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRN---------------QLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT 342 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d---------------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~ 342 (505)
+|+++|.+|||||||+|+|++........ ....|.+....... ..+..+.++||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHH-----
Confidence 38999999999999999999875332211 11122222221111 2356899999999532
Q ss_pred CcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------
Q psy50 343 LLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------ 410 (505)
Q Consensus 343 lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------ 410 (505)
.. ......+..+|++++|+|++++.... ...+...+... ..|+++|+||+|+......
T Consensus 75 ~~---~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~------~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 75 FS---SEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREG------GLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred HH---HHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHC------CCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 11 22345567899999999998876443 22333334332 2599999999999863221
Q ss_pred --------------CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 --------------VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 --------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
....+++++||++|.|+++++++|.+.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 01357899999999999999999988763
No 124
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=1.6e-15 Score=142.80 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=98.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc--CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML--PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~--~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|||||||+++|.+.... ..+..+..+........ .....+.+|||+|... ...+ ....+.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~~ 71 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE------YDRL--RPLSYP 71 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh------HHHH--HHHhCC
Confidence 6999999999999999999987532 22222211111111112 2345789999999321 1111 112356
Q ss_pred hhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---C-----------CCC-CeEEE
Q psy50 356 LADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---V-----------TEE-YDLLI 419 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---~-----------~~~-~~v~i 419 (505)
.+|++++|+|++++.+.+... .|...+.... .+.|+++|+||+|+...... . ... +++++
T Consensus 72 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 799999999999887665443 2443333221 13599999999998654310 0 023 78999
Q ss_pred eccCcccHHHHHHHHHHHHhhh
Q psy50 420 SATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~~ 441 (505)
||++|.|++++++.+.+.+...
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988653
No 125
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=1.3e-15 Score=145.37 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|||||||++++++.... ..+..++.+......... ....+.++||+|... ...+ ....+..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~--~~~~~~~ 70 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS------FPAM--RKLSIQN 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchh------hhHH--HHHHhhc
Confidence 4899999999999999999987522 222222222111111111 235788999999432 1111 1124567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------C-CCCeEEEeccCc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------T-EEYDLLISATRG 424 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~-~~~~v~iSA~~g 424 (505)
+|++++|+|++++.+.+....+...+..... ....|+++|+||+|+....... . ..+++++||++|
T Consensus 71 ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (198)
T cd04147 71 SDAFALVYAVDDPESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDN 148 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCC
Confidence 9999999999988776655555544443321 1236999999999987532111 1 246899999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.|+++++++|.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (198)
T cd04147 149 ENVLEVFKELLRQAN 163 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998773
No 126
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.66 E-value=3.3e-16 Score=147.11 Aligned_cols=145 Identities=23% Similarity=0.192 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CCCcchhhh-
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TTLLEPFKV- 349 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~lie~f~~- 349 (505)
+.+.+.|+|+|++|+|||||+|+|++.. ...+.+...+|.++.... . +..+.++||||+..... ....+.+..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V--NDGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e--CCcEEEEeCCCCccccCChhHHHHHHHH
Confidence 4567899999999999999999999874 333445555666543322 1 23689999999754211 111122222
Q ss_pred ---hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------C---
Q psy50 350 ---TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------T--- 412 (505)
Q Consensus 350 ---tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~--- 412 (505)
.+.....+|++++|+|++++..... ..+...+...+ .|+++|+||+|+....+.. .
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~-~~~~~~~~~~~------~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELD-LEMLEWLRERG------IPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHH-HHHHHHHHHcC------CCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 1222234689999999988655433 33445555433 4999999999997543210 0
Q ss_pred CCCeEEEeccCcccHH
Q psy50 413 EEYDLLISATRGTGLA 428 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~ 428 (505)
..+++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 2379999999999974
No 127
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=1.3e-15 Score=141.93 Aligned_cols=151 Identities=15% Similarity=0.048 Sum_probs=97.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee-eeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL-DVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl-d~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
+..+|+++|.+|||||||++++++.... +.++..++. +......... ....+.++||+|-.. ...+ ...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~------~~~~--~~~ 73 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV------AILL--NDA 73 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccc------cccc--chh
Confidence 5678999999999999999999987522 133333221 1111112222 235678899998421 1111 223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--C---------CCCCeEEEec
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--V---------TEEYDLLISA 421 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--~---------~~~~~v~iSA 421 (505)
.+..+|++++|+|++++.+.+.. ..++..+... ...|+++|+||+|+...... . ....++++||
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~---~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYC---AEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSS 148 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHH---HHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEe
Confidence 35679999999999987654433 3334333211 13599999999998654321 0 0224699999
Q ss_pred cCcccHHHHHHHHHHHHh
Q psy50 422 TRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~ 439 (505)
++|.|++++++.|.+.+.
T Consensus 149 ~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 149 KLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999999988763
No 128
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=1.3e-15 Score=150.99 Aligned_cols=151 Identities=16% Similarity=0.207 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|||||||++++++.... ..+..++.+......... ....+.+|||+|... ...++ ...+..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~------~~~~~--~~~~~~ 71 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP------FPAMR--RLSILT 71 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh------hhHHH--HHHhcc
Confidence 6899999999999999999876422 222222222222111122 236788999999421 11111 123567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCc------ccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEE
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLEL------EEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLI 419 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~------~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~i 419 (505)
+|++++|+|++++.+.+....+.+.+..... ....+.|+++|+||+|+....... ...+++++
T Consensus 72 ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ev 151 (247)
T cd04143 72 GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEV 151 (247)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEE
Confidence 9999999999998776655555555543311 112246999999999997532211 12468999
Q ss_pred eccCcccHHHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l 438 (505)
||++|.|++++++.|.+..
T Consensus 152 SAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 152 SAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 129
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.4e-15 Score=143.48 Aligned_cols=148 Identities=20% Similarity=0.140 Sum_probs=96.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i 354 (505)
..+|+++|++|||||||++++....... + ..|......... ..+..+.+|||+|.. .++. ....+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~---~-~~T~~~~~~~~~-~~~~~~~l~D~~G~~---------~~~~~~~~~~ 82 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT---T-IPTIGFNVETVE-YKNLKFTMWDVGGQD---------KLRPLWRHYY 82 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---c-CCccccceEEEE-ECCEEEEEEECCCCH---------hHHHHHHHHh
Confidence 4689999999999999999997543221 1 112222222121 246789999999942 2222 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------C-----CCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------T-----EEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~-----~~~~v~iS 420 (505)
..+|++++|+|++++....... .+..++..- .....|+++|+||+|+....... . ...++++|
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSED---ELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCH---hhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence 7899999999999876543322 222333221 11235999999999986432110 0 11356899
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|+++++++|.+.+.+
T Consensus 160 a~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.65 E-value=1.9e-15 Score=139.97 Aligned_cols=146 Identities=22% Similarity=0.179 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
.+..+|+++|++|||||||+++|++...... ..|...+...... .+..+.++||+|... +.. ...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~---------~~~~~~~ 77 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA---------IRPYWRN 77 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc----CCCCCcceEEEEE-CCEEEEEEECCCCHH---------HHHHHHH
Confidence 4568899999999999999999998742211 1111111112222 367889999999421 211 123
Q ss_pred HHHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------C-------CCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------T-------EEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~-------~~~~v~ 418 (505)
.+..+|.+++|+|+++........ .+...++... ....|+++++||+|+....... . ..++++
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 154 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQA 154 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEE
Confidence 356799999999998765433222 2223333211 1235999999999986543210 0 124789
Q ss_pred EeccCcccHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~ 436 (505)
+||++|.|+++++++|.+
T Consensus 155 ~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 155 CSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred eECCCCCCHHHHHHHHhc
Confidence 999999999999999864
No 131
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=1.6e-15 Score=137.67 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|+|++.. ....+..++.+......... ....+.++|++|... ...+ ....+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~--~~~~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE------FSAM--RDLYIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH------HHHH--HHHHHhc
Confidence 48999999999999999999875 22333333332222222222 246788999999432 1111 2234667
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~g 426 (505)
+|++++|+|++++.+......+...+..... ....|+++|+||+|+....... ...+++++||+++.|
T Consensus 71 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 148 (160)
T cd00876 71 GDGFILVYSITDRESFEEIKGYREQILRVKD--DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNIN 148 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCC
Confidence 9999999999987765555444444443321 1235999999999987633211 135899999999999
Q ss_pred HHHHHHHHHHH
Q psy50 427 LAQLKEKVQDM 437 (505)
Q Consensus 427 i~eL~~~I~~~ 437 (505)
+++++++|.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 132
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=1.3e-15 Score=143.89 Aligned_cols=147 Identities=21% Similarity=0.224 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+++|.+|||||||+|+|.+...... .+|..++..... .++.++.++||+|... .... ....+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~G~~~------~~~~--~~~~~ 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELA-IGNIKFTTFDLGGHQQ------ARRL--WKDYF 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEE-ECCEEEEEEECCCCHH------HHHH--HHHHh
Confidence 458899999999999999999998642211 223333322222 2467889999999532 1111 12346
Q ss_pred HhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------C--------------CC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------V--------------TE 413 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~--------------~~ 413 (505)
..+|.+++|+|++++....... .+.++++.... ...|+++|+||+|+...... . ..
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~---~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 159 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEEL---ATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP 159 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhh---cCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence 6899999999999876543322 22233332111 23599999999998532211 0 02
Q ss_pred CCeEEEeccCcccHHHHHHHHHHH
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
..++++||++|+|+++++++|.+.
T Consensus 160 ~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 160 LEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eEEEEeecccCCChHHHHHHHHhh
Confidence 248999999999999999999764
No 133
>KOG0078|consensus
Probab=99.65 E-value=2.8e-15 Score=141.61 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=120.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh-hhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK-VTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle 352 (505)
...+|.++|.+|||||+++-++.... ....-...-++|...+.+.++ ....+++|||+| .+.|+ .+-.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~-f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG---------Qerf~ti~~s 80 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDS-FNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAG---------QERFRTITTA 80 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhcc-CcCCccceEEEEEEEEEEEeCCeEEEEEEEEccc---------chhHHHHHHH
Confidence 45789999999999999999998875 323333334556555555444 457889999999 34453 3667
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~ 422 (505)
+++.|+.+++|+|+++..+.+....|.+.+++..-+ ..|.++|+||+|+........ ...++++||+
T Consensus 81 YyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk 157 (207)
T KOG0078|consen 81 YYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAK 157 (207)
T ss_pred HHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEcccc
Confidence 788999999999999998888888888888876543 359999999999977544321 5689999999
Q ss_pred CcccHHHHHHHHHHHHhhhc
Q psy50 423 RGTGLAQLKEKVQDMILKAT 442 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~~ 442 (505)
+|.||++.+-.|.+.+.+.+
T Consensus 158 ~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999887543
No 134
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.7e-15 Score=142.91 Aligned_cols=148 Identities=21% Similarity=0.181 Sum_probs=96.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhh-HHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVT-LED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~t-le~ 353 (505)
...+|+++|.+|||||||+++++..... .. ..|......... ..+..+.+|||+|. +.++.. ...
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~--~pt~g~~~~~~~-~~~~~~~i~D~~Gq---------~~~~~~~~~~ 81 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVE-YKNISFTVWDVGGQ---------DKIRPLWRHY 81 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cc--cCCcceeEEEEE-ECCEEEEEEECCCC---------HHHHHHHHHH
Confidence 3468999999999999999999865422 11 122222111121 24678999999993 223222 234
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC-------------CCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT-------------EEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~-------------~~~~v~i 419 (505)
+..+|++++|+|++++....... .+...+..... .+.|+++|+||+|+........ ...++++
T Consensus 82 ~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 158 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhh---CCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEec
Confidence 67899999999999876543222 22223322122 2359999999999865432100 0135689
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
||++|+|+++++++|.+.+.
T Consensus 159 Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 159 CATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988764
No 135
>PLN03108 Rab family protein; Provisional
Probab=99.65 E-value=2.9e-15 Score=144.66 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=101.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+|+|++|||||||+|+|++...... ..+..+.+......... ....+.+|||+|... ... .+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~------~~~--~~~~~~ 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQES------FRS--ITRSYY 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCcHH------HHH--HHHHHh
Confidence 36899999999999999999998752211 11111122111111121 235688999999432 111 123446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|.+++|+|++++.+......+...+..... ...|+++|+||+|+....... ...+++++||+++
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 153 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 679999999999988776655455444433321 235999999999987543221 1357899999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|++++++++.+.+.+.
T Consensus 154 ~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 154 QNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998877653
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.65 E-value=1.9e-15 Score=140.70 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC-----cccee---------eeeeeeeeeccc----cCCcceEEEEeeeeeeecC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLV-----PRNQL---------FATLDVTTHEGM----LPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~-----~~d~~---------ftTld~t~~~~~----~~~~~~v~l~DT~Gfi~~l 339 (505)
.|+++|.+|+|||||+++|++..... ...+. ..|......... ......+.+|||||+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 58999999999999999998743111 11110 011111110110 12456788999999632
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------- 410 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------- 410 (505)
.. ..+...+..+|++++|+|++++........+.. +... ..|+++|+||+|+......
T Consensus 80 ---~~---~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~~------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 146 (179)
T cd01890 80 ---FS---YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALEN------NLEIIPVINKIDLPSADPERVKQQIEDV 146 (179)
T ss_pred ---hH---HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHHc------CCCEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 11 123345678999999999988654433333332 2222 2489999999998643210
Q ss_pred C--CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 411 V--TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 411 ~--~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
. ....++++||++|.|+++|+++|.+.+
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 147 LGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred hCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 0 012489999999999999999998765
No 137
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.65 E-value=2.7e-15 Score=140.13 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=99.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+|+|++|||||||++++++... ...+..++.+......... ....+.++||||... ...+ ......
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~--~~~~~~ 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE------YSIL--PQKYSI 71 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh------hHHH--HHHHHh
Confidence 3799999999999999999997652 2222222211111111111 245678999999432 1111 113355
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHH-HHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDE-TLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~-~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
.+|.+++|+|+++.........+.. +++..+.. ..|+++|+||+|+....... ...+++++||+++
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKE---SVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN 148 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 6999999999998765554444433 33333322 35999999999986533211 0357899999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+++++++|.+.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 149 ENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 138
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.65 E-value=1.7e-15 Score=136.54 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=92.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHhh
Q psy50 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAMLA 357 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~A 357 (505)
|+++|++|||||||+|+|++.... .++. .|......... .++..+.++||||.. .++. ....+..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~--~~~~-~t~~~~~~~~~-~~~~~~~~~D~~g~~---------~~~~~~~~~~~~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS--EDTI-PTVGFNMRKVT-KGNVTLKVWDLGGQP---------RFRSMWERYCRGV 68 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC--cCcc-CCCCcceEEEE-ECCEEEEEEECCCCH---------hHHHHHHHHHhcC
Confidence 799999999999999999987522 2211 12111111111 234778999999942 1221 23446779
Q ss_pred ceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEeccC
Q psy50 358 DIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISATR 423 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA~~ 423 (505)
|++++|+|++++....... .+..++..... ...|+++|+||+|+....... ...+++++||++
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSL---EGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKE 145 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhh---cCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEecc
Confidence 9999999998765443322 22333332222 235999999999987543210 024689999999
Q ss_pred cccHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQD 436 (505)
Q Consensus 424 g~gi~eL~~~I~~ 436 (505)
|.|+++++++|.+
T Consensus 146 ~~gi~~l~~~l~~ 158 (159)
T cd04159 146 KTNIDIVLDWLIK 158 (159)
T ss_pred CCChHHHHHHHhh
Confidence 9999999999865
No 139
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.65 E-value=2.5e-15 Score=146.48 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee-eeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL-DVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl-d~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|||||||++++++.... ...+..+.- +........ .....+.+|||+|.. .... ...+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--------~~~~--~~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--------MWTE--DSCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--------hHHH--hHHhh
Confidence 6999999999999999999755321 011111110 111111111 235678999999943 0111 11233
Q ss_pred -hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 356 -LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 356 -~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
.+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++|
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~ 148 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQ 148 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 79999999999998776655666665555421 12369999999999865433211 346899999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.|++++++.|.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (221)
T cd04148 149 HNVDELLEGIVRQIR 163 (221)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999885
No 140
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=1.5e-15 Score=147.75 Aligned_cols=151 Identities=18% Similarity=0.133 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee--cccc-CCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH--EGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~--~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
...+|+++|.+|||||||+++++..... .. ...|...... .... .....+.+|||+|.-. ...+. .
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~--~~-~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~--~ 80 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK------FGGLR--D 80 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCC--Cc-cCCccceeEEEEEEEECCeEEEEEEEECCCchh------hhhhh--H
Confidence 4568999999999999999998765421 11 1112111111 1111 2346889999999422 11111 1
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEeccC
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISATR 423 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA~~ 423 (505)
..+..+|++|+|+|++++.+......|...+.... . ..|+++|+||+|+....... ...+++++||++
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~---~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~ 156 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E---NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-C---CCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCC
Confidence 23567999999999999887766666666555432 2 35999999999986432111 135689999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|+++++++|.+.+.+
T Consensus 157 ~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 157 NYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999988854
No 141
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=3.3e-15 Score=136.31 Aligned_cols=143 Identities=19% Similarity=0.144 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|.+|||||||+|++++...... ..|...+..... .....+.+|||||... ...+ ....+..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~------~~~~--~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDK------IRPL--WKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEE-ECCEEEEEEECCCChh------hHHH--HHHHhccC
Confidence 489999999999999999998862211 222222222221 1357899999999432 1111 12345679
Q ss_pred ceeEEEeeCCCCChHHHHHHH-HHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CCCCCeEEEeccC
Q psy50 358 DIIIHVVDVSNPDYLQQKQHV-DETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VTEEYDLLISATR 423 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v-~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~~~~~v~iSA~~ 423 (505)
|++++|+|++++........+ ..++.... ....|+++|+||+|+...... ....+++++||++
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVT 144 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCC
Confidence 999999999987654433322 23333222 123599999999998764311 0134699999999
Q ss_pred cccHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQD 436 (505)
Q Consensus 424 g~gi~eL~~~I~~ 436 (505)
|.|+++++++|..
T Consensus 145 ~~gv~~~~~~l~~ 157 (158)
T cd00878 145 GDGLDEGLDWLLQ 157 (158)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999864
No 142
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.64 E-value=2.1e-15 Score=141.43 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=97.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++..... ..++..+..+........ .....+.+|||+|.-. ...+ ....+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~~ 71 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED------YDRL--RPLSYP 71 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc------hhhh--hhhhcc
Confidence 4799999999999999999997652 222222221111111111 1236788999999421 1111 122456
Q ss_pred hhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------------------C
Q psy50 356 LADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------------------V 411 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------------------~ 411 (505)
.+|++++|+|++++.+.+... .|...+.... + ..|+++|+||+|+....+. .
T Consensus 72 ~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~---~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 72 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P---KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 799999999999987766554 3555555432 2 3599999999998654210 0
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
....++++||++|.|++++++.+...
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 02468999999999999999998764
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.64 E-value=3.1e-15 Score=141.13 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=95.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
...+|+++|++|||||||+|+|++.... ....|..++...... ++..+.++||||.. .++. ....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~----~~~~T~~~~~~~i~~-~~~~~~l~D~~G~~---------~~~~~~~~~ 83 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA----QHVPTLHPTSEELTI-GNIKFKTFDLGGHE---------QARRLWKDY 83 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc----ccCCccCcceEEEEE-CCEEEEEEECCCCH---------HHHHHHHHH
Confidence 3578999999999999999999986521 122233333222222 45788999999932 1211 2344
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------------------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------------------- 411 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------------------- 411 (505)
+..+|.+++|+|++++....... .+..++... .....|+++|+||+|+.......
T Consensus 84 ~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~---~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 84 FPEVDGIVFLVDAADPERFQESKEELDSLLSDE---ELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc---cccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccc
Confidence 67899999999999765433222 222233221 22336999999999986432110
Q ss_pred ---CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 ---TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 ---~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
...+++++||++|+|+++++++|.+.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 01247999999999999999999765
No 144
>KOG0092|consensus
Probab=99.64 E-value=1.1e-15 Score=142.18 Aligned_cols=151 Identities=20% Similarity=0.180 Sum_probs=109.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCC----ccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLV----PRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~----~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
..+|+++|.+|||||||+-++....... +-...|-|..... ....+++.+|||+|.-+ .+.+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~----~~~~ikfeIWDTAGQER--y~slap------ 72 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV----DDNTIKFEIWDTAGQER--YHSLAP------ 72 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe----CCcEEEEEEEEcCCccc--cccccc------
Confidence 4689999999999999999988765221 1112233332221 23457889999999533 222322
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA 421 (505)
-+++.|+..|+|+|+++..+....+.|.+.|++-.-++ .-+.+|+||+||....... ....++++||
T Consensus 73 MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~---~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSA 149 (200)
T KOG0092|consen 73 MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN---IVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSA 149 (200)
T ss_pred ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC---eEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEec
Confidence 24678999999999999999888888888777664333 3567899999998854431 1567999999
Q ss_pred cCcccHHHHHHHHHHHHhhh
Q psy50 422 TRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~~ 441 (505)
++|.|+++++..|.+.++..
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred ccccCHHHHHHHHHHhccCc
Confidence 99999999999999998653
No 145
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.1e-15 Score=165.83 Aligned_cols=152 Identities=26% Similarity=0.185 Sum_probs=114.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH--
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA-- 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i-- 354 (505)
.+||++|.||+|||||+|+|||.+ ..+++.+..|.+-....... .+..+.++|.||..+-.+.+.-|... .+.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Va--r~~ll~ 79 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVA--RDFLLE 79 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHH--HHHHhc
Confidence 469999999999999999999997 67999999998865544333 45679999999988766655555442 2222
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCcc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGT 425 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~ 425 (505)
..+|+++.|+|+++.... .. +.-.|.++| .|+++++|++|........ -..|++++||++|.
T Consensus 80 ~~~D~ivnVvDAtnLeRn--Ly-ltlQLlE~g------~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~ 150 (653)
T COG0370 80 GKPDLIVNVVDATNLERN--LY-LTLQLLELG------IPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGE 150 (653)
T ss_pred CCCCEEEEEcccchHHHH--HH-HHHHHHHcC------CCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCC
Confidence 357999999999876432 22 222344555 3899999999987654321 16899999999999
Q ss_pred cHHHHHHHHHHHHhhh
Q psy50 426 GLAQLKEKVQDMILKA 441 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~ 441 (505)
|+++|++.+.+...+.
T Consensus 151 G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 151 GLEELKRAIIELAESK 166 (653)
T ss_pred CHHHHHHHHHHhcccc
Confidence 9999999999877543
No 146
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=1.4e-15 Score=171.73 Aligned_cols=152 Identities=25% Similarity=0.190 Sum_probs=107.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC----CCCcchhhhhHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP----TTLLEPFKVTLE 352 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp----~~lie~f~~tle 352 (505)
.+|+++|+||||||||+|+|+|.. ..+++.+.+|.+....... .++.++.++||||+.+-.+ ..+-|.......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 579999999999999999999986 4578888888876544332 3567899999999764221 111122111111
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccC
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATR 423 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~ 423 (505)
....+|++++|+|+++.... ..+...+.+++ .|+++|+||+|+....... -..+++++||++
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e~g------iPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLELG------IPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHHcC------CCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeec
Confidence 12368999999999875432 22334455554 4999999999987543311 156899999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|+|+++|++.+.+...
T Consensus 153 g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 153 GRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999988753
No 147
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=2.1e-15 Score=139.85 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=95.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
|+++|.+|||||||++++++.... ..+..+..+......... ....+.+|||+|.-. ...+. ...+..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~--~~~~~~~ 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQED------YDRLR--PLSYPDT 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc------cchhc--hhhcCCC
Confidence 579999999999999999987532 222111111111111112 235689999999421 11111 1234579
Q ss_pred ceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------C-----------CCC
Q psy50 358 DIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------R-----------VTE 413 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~-----------~~~ 413 (505)
|++++|+|++++.+.+... .|...+.... ...|+++|+||+|+..... . ...
T Consensus 71 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 71 DVFLICFSVDSPASFENVKEKWYPEVKHFC----PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 9999999999887665442 3455444432 2369999999999865221 0 012
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHH
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
.+++++||++|.|++++++.+.+.+
T Consensus 147 ~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 147 VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999998876
No 148
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=2.6e-15 Score=140.64 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=95.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+.++..... ...+..+..+........ .....+.+|||+|.-. ...+ ....+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~~~ 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED------YDRL--RPLSYP 71 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh------hhhh--hhhhcC
Confidence 4789999999999999999987542 222222111111111111 1346788999999321 1111 112356
Q ss_pred hhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------C-----------C
Q psy50 356 LADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------R-----------V 411 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~-----------~ 411 (505)
.+|++++|+|++++.+..... .|...+.... + +.|+++|+||+|+..... . .
T Consensus 72 ~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~---~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 72 QTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 799999999999987766543 4555554432 2 359999999999864321 0 0
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
...+++++||++|.|++++++.+.+.
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHHHHh
Confidence 01368999999999999999998763
No 149
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.63 E-value=2.7e-15 Score=141.23 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=100.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|+|||||+++++.... ..++..+.-+........ .....+.+|||+|.-. ...+ ....++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~------~~~~--~~~~~~ 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED------YNRL--RPLSYR 71 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc------cccc--chhhcC
Confidence 4799999999999999999997652 222222211111111111 2347789999999421 1111 123467
Q ss_pred hhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC----------CC----------CCC
Q psy50 356 LADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE----------RV----------TEE 414 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~----------~~----------~~~ 414 (505)
.||++++|+|++++.+.+.. ..|...+.... + +.|+++|+||+|+..... .. ...
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~---~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHYA-P---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 89999999999999887765 45666665443 2 359999999999965321 10 023
Q ss_pred -CeEEEeccCcccHHHHHHHHHHHH
Q psy50 415 -YDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 415 -~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
+++++||++|.|++++++.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 150
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=2.7e-15 Score=142.25 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|||||||++++++.... ..+..+..+......... ....+.+|||+|.-. ...+. ...+..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~l~--~~~~~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE------FDRLR--SLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChh------ccccc--cccccC
Confidence 6899999999999999999987532 111111111111111112 246789999999421 11111 113567
Q ss_pred hceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C------------C
Q psy50 357 ADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V------------T 412 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~------------~ 412 (505)
+|++++|+|++++.+..... .|...+.... ...|+++|+||+|+...... . .
T Consensus 72 a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHC----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 99999999999988765443 3554444321 13599999999999654310 0 0
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
..+++++||++|.|+++++++|.+.+..
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999988753
No 151
>KOG1486|consensus
Probab=99.63 E-value=2.3e-15 Score=144.92 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=147.3
Q ss_pred HHHHHHhhccCHHHH-----HHHHHHcCcchHhhhhccccc-CcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy50 194 VIQIFKAHAKTREAR-----LQIAIAELPYLWTRYRTIEDA-TNMNITKGFLDSKRMVLMEREQKLKKALNKLKGQREMM 267 (505)
Q Consensus 194 il~If~~~A~t~eak-----lQv~lA~l~~~~~rl~~~~~g-~~~g~ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~ 267 (505)
|-+|-+..|||...| |-.--|.|...|.+|....++ +..|.|.+..
T Consensus 7 I~eIE~EmaRTQKNKaTEyHLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~---------------------------- 58 (364)
T KOG1486|consen 7 IKEIEAEMARTQKNKATEYHLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVL---------------------------- 58 (364)
T ss_pred HHHHHHHHHHhhhccchhHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeee----------------------------
Confidence 778899999988754 333344555566677666554 4455554432
Q ss_pred HhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh
Q psy50 268 RNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF 347 (505)
Q Consensus 268 r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f 347 (505)
+++..+|+++|+|.+|||||+..++... .....+.|+|+..... +...++..+++.|.||+++......-..
T Consensus 59 -----KsGdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpG-vi~y~ga~IQllDLPGIieGAsqgkGRG- 130 (364)
T KOG1486|consen 59 -----KSGDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPG-VIHYNGANIQLLDLPGIIEGASQGKGRG- 130 (364)
T ss_pred -----ccCCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecc-eEEecCceEEEecCcccccccccCCCCC-
Confidence 3477899999999999999999999876 4578999999964333 3334688899999999998544332211
Q ss_pred hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc--------------------------------------
Q psy50 348 KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE-------------------------------------- 389 (505)
Q Consensus 348 ~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~-------------------------------------- 389 (505)
+......+.||++++|+|++.... +.+.+...|+..|+.-
T Consensus 131 RQviavArtaDlilMvLDatk~e~--qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILh 208 (364)
T KOG1486|consen 131 RQVIAVARTADLILMVLDATKSED--QREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILH 208 (364)
T ss_pred ceEEEEeecccEEEEEecCCcchh--HHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHH
Confidence 223344567999999999987643 3445556666655421
Q ss_pred ---------------------------ccCccEEEEEeCCCCCCCCCCC---CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 390 ---------------------------KILEHVLVVGNKVDAVPPGERV---TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 390 ---------------------------~~~~p~IlV~NKiDl~~~~~~~---~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
....+++.|.||+|.+..++.. ..++.+-||+-...|++.|++.|.+.+
T Consensus 209 eykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 209 EYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred HHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHh
Confidence 1223488999999988766532 256778999999999999999999988
No 152
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=2.8e-15 Score=144.11 Aligned_cols=149 Identities=22% Similarity=0.248 Sum_probs=95.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC-cccee-eeeeeeeeecccc--------------------------------CC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLV-PRNQL-FATLDVTTHEGML--------------------------------PN 323 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~-~~d~~-ftTld~t~~~~~~--------------------------------~~ 323 (505)
.|+++|++|+|||||+.+|++..... ...+. ..|.........+ ..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999998763111 11110 1111111000000 01
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
...+.|+||||.- .+ ....+..+..+|++++|+|++++....+.......+...+. .|+++|+||+|
T Consensus 82 ~~~i~~iDtPG~~-----~~---~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~-----~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHE-----IL---MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGL-----KHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChH-----HH---HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCC-----CcEEEEEEchh
Confidence 2678999999931 11 13345667778999999999975322222233444444443 37899999999
Q ss_pred CCCCCCC----------C-----CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 404 AVPPGER----------V-----TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 404 l~~~~~~----------~-----~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+...... . ...+++++||++|.|+++|++.|.+.++
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 9753221 0 1346899999999999999999988774
No 153
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.62 E-value=3.5e-15 Score=138.36 Aligned_cols=147 Identities=20% Similarity=0.165 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|+|||||++++++.... ..+..+..+......... ....+.+|||+|... ...+.+ ..+..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~~~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED--YDRLRP------LSYPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc--cccccc------ccCCC
Confidence 6899999999999999999887532 222222221111111122 234578999999422 111111 12456
Q ss_pred hceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C------------C
Q psy50 357 ADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V------------T 412 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~------------~ 412 (505)
+|++++|+|++++.+..... .+...+... . ...|+++|+||+|+...... . .
T Consensus 72 ~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEY-A---PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C---CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 89999999999887655442 455555543 1 23599999999998653210 0 0
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
..+++++||++|.|++++++.+.+.+
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 23689999999999999999998754
No 154
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62 E-value=4.1e-15 Score=138.03 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=95.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||++++.+.... ..+..+..+......... ....+.+|||+|.-. ...+. ...+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~--~~~~~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQED------YDRLR--PLSYP 71 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchh------hhhcc--ccccC
Confidence 47999999999999999999986522 222222111111111122 345789999999421 11111 11245
Q ss_pred hhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C------------
Q psy50 356 LADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V------------ 411 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~------------ 411 (505)
.+|++++|+|++++.+.+... .+...+.... ...|+++|+||+|+...... .
T Consensus 72 ~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 72 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 799999999999876654442 3444444321 13599999999998653211 0
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
...+++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 023689999999999999999998653
No 155
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.62 E-value=5.1e-15 Score=136.62 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|||||||++++...... ..+. ++........... ....+.+|||+|.-. . .....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~--~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-------~------~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV--QLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD-------A------QFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC--CCCC-CCccceEEEEEECCEEEEEEEEECCCCCc-------h------hHHhc
Confidence 6899999999999999988765321 1111 1111111111121 235688999999421 1 12356
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC--CCCC-----------CCCCeEEEeccC
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP--GERV-----------TEEYDLLISATR 423 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~--~~~~-----------~~~~~v~iSA~~ 423 (505)
+|++++|+|++++.+......+...+.... .....|+++|+||+|+... .... ....++++||++
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~--~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYR--NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 999999999999988776666666555442 1123599999999998532 1111 135799999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
|.|++++++.+.+.
T Consensus 144 ~~~i~~~f~~~~~~ 157 (158)
T cd04103 144 GLNVERVFQEAAQK 157 (158)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998754
No 156
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=1.1e-15 Score=133.21 Aligned_cols=115 Identities=30% Similarity=0.309 Sum_probs=82.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCC-cchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTL-LEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~l-ie~f~~tle~i~~ 356 (505)
+|+|+|+||||||||+|+|++.....+++..++|..+....... .+..+.++||||+........ ...+..+++.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 58999999999999999999976566788888888774433222 566778999999876322111 1234557788889
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
+|++++|+|++++.. +....+.+.|+ ..+|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~-------~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK-------NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH-------TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh-------cCCCEEEEEcC
Confidence 999999999877332 33444444452 22599999998
No 157
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=4.2e-15 Score=138.03 Aligned_cols=143 Identities=22% Similarity=0.169 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ 356 (505)
+|+++|++|||||||+|+|++.. . . ....|...+..... ..+..+.++||+|.. .++. ....+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~-~--~-~~~~t~g~~~~~~~-~~~~~~~i~D~~G~~---------~~~~~~~~~~~~ 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI-P--K-KVAPTVGFTPTKLR-LDKYEVCIFDLGGGA---------NFRGIWVNYYAE 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-C--c-cccCcccceEEEEE-ECCEEEEEEECCCcH---------HHHHHHHHHHcC
Confidence 47999999999999999999762 1 1 11222222222222 246788999999932 1211 2345678
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C---C--CCCeEEEe
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V---T--EEYDLLIS 420 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~---~--~~~~v~iS 420 (505)
+|++++|+|++++........++..+... ......|+++|+||+|+...... . . ...++++|
T Consensus 67 a~~ii~V~D~s~~~s~~~~~~~l~~l~~~--~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~S 144 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQH--PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCS 144 (167)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHcC--ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeE
Confidence 99999999999876544333333322211 11124699999999998664311 0 0 13578899
Q ss_pred ccCc------ccHHHHHHHHHH
Q psy50 421 ATRG------TGLAQLKEKVQD 436 (505)
Q Consensus 421 A~~g------~gi~eL~~~I~~ 436 (505)
|++| .|+++-++||.+
T Consensus 145 a~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 145 AIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ceeCCCCccccCHHHHHHHHhc
Confidence 9998 899999999864
No 158
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.62 E-value=7.6e-15 Score=139.53 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=98.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++...... ..+..+.-+........ .....+.+|||+|.-. ...+. -..+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~------~~~l~--~~~~~ 73 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE------YDRLR--TLSYP 73 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCCchh------hhhhh--hhhcc
Confidence 57999999999999999999876421 22211111111111111 2346789999999321 11111 12356
Q ss_pred hhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------CC----------C
Q psy50 356 LADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------RV----------T 412 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~~----------~ 412 (505)
.||++++|+|++++.+.+... .|...+.... + ..|+++|+||+||..... .. .
T Consensus 74 ~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~---~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 74 QTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P---NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C---CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 799999999999988776554 3555444321 2 359999999999964321 00 0
Q ss_pred C-CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 E-EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 ~-~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
. .+++++||++|.|++++++.|.+.+.
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 2 46899999999999999999998774
No 159
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=4.7e-15 Score=136.60 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc-cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM-LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~-~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+|+|++.... .....+..+....... ......+.+|||||.... ..+.. ..+..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~--~~~~~------~~~~~ 71 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY--DRLRP------LSYPN 71 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc--cccch------hhcCC
Confidence 6899999999999999999987631 1111111111111111 123567899999996431 11111 12356
Q ss_pred hceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------------------CC
Q psy50 357 ADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------------------TE 413 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------------------~~ 413 (505)
+|++++|+|++++.+.... ..+...+.... ...|+++|+||+|+....... ..
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 72 TDVFLICFSVDSPSSFENVKTKWIPEIRHYC----PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 9999999999986554332 23344443322 136999999999997655210 02
Q ss_pred CCeEEEeccCcccHHHHHHHHHH
Q psy50 414 EYDLLISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~ 436 (505)
.+++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 37999999999999999999865
No 160
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=6.9e-15 Score=138.53 Aligned_cols=148 Identities=21% Similarity=0.203 Sum_probs=98.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||++++.+... ..++..+..+........ .....+.+|||+|.-. ...+ ....++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~------~~~~--~~~~~~ 71 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY------YDNV--RPLCYP 71 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh------hhhc--chhhcC
Confidence 3699999999999999999998752 222222211111111111 2346789999999321 1111 112356
Q ss_pred hhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCC-----------C-CCC----------C
Q psy50 356 LADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPP-----------G-ERV----------T 412 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~-----------~-~~~----------~ 412 (505)
.||++++|+|++++.+.+.. ..|...+.... + ..|+++|+||+||... . ... .
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEFC-P---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-C---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 79999999999999887763 56666666543 2 3599999999998541 1 111 0
Q ss_pred C-CCeEEEeccCccc-HHHHHHHHHHHH
Q psy50 413 E-EYDLLISATRGTG-LAQLKEKVQDMI 438 (505)
Q Consensus 413 ~-~~~v~iSA~~g~g-i~eL~~~I~~~l 438 (505)
. .+++++||++|+| +++++..+.+..
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 3 3689999999995 999999998853
No 161
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.61 E-value=1.9e-15 Score=143.25 Aligned_cols=149 Identities=26% Similarity=0.289 Sum_probs=102.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCcc-----------------ceeeeeeeeeeeccc-cCCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPR-----------------NQLFATLDVTTHEGM-LPNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~-----------------d~~ftTld~t~~~~~-~~~~~~v~l~DT~Gfi~ 337 (505)
...|+++|+.++|||||+++|++....... .....|.+....... ...+..+.++||||...
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 457999999999999999999865322111 000112222221111 13577899999999421
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------- 410 (505)
....+...+..+|++++|+|+.++... +.......+..+++ |+++|+||+|+....-.
T Consensus 83 --------f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~~~------p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 83 --------FIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRELGI------PIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp --------HHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHTT-------SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred --------eeecccceecccccceeeeeccccccc-cccccccccccccc------ceEEeeeeccchhhhHHHHHHHHH
Confidence 123355667789999999999887543 45666777777664 89999999999832100
Q ss_pred --------C---CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 --------V---TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 --------~---~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
. ...+++++||++|.|+++|++.|.+.++
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 0 0247999999999999999999998874
No 162
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.61 E-value=1.1e-14 Score=137.92 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+++|.+|||||||++++..... ..++..+..+........ .....+.+|||+|-- .|.. ....
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e---------~~~~~~~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP---------YYDNVRPLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCch---------hhHhhhhhh
Confidence 45799999999999999999987642 222221111111111111 234678999999931 1211 1234
Q ss_pred HHhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCC-----------C-CCC---------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPP-----------G-ERV--------- 411 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~-----------~-~~~--------- 411 (505)
++.||++++|+|++++.+.+.. ..|...++... + ..|+++|+||+|+... . ...
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~---~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 149 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK 149 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C---CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH
Confidence 6789999999999999877664 56666666543 2 3599999999998542 1 111
Q ss_pred -CC-CCeEEEeccCccc-HHHHHHHHHHHH
Q psy50 412 -TE-EYDLLISATRGTG-LAQLKEKVQDMI 438 (505)
Q Consensus 412 -~~-~~~v~iSA~~g~g-i~eL~~~I~~~l 438 (505)
.. .+++++||++|.| +++++..+.+..
T Consensus 150 ~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 150 QIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred HcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 03 3799999999998 999999988753
No 163
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=1.6e-14 Score=141.85 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc-cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM-LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~-~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||++++++... ...+..+..+....... ......+.+|||+|-- ....+ ....+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e------~~~~~--~~~~~ 82 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSP------YYDNV--RPLCY 82 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCch------hhHHH--HHHHc
Confidence 35799999999999999999987642 22221111111111111 1235678999999921 11121 22346
Q ss_pred HhhceeEEEeeCCCCChHHH-HHHHHHHHHhcCcccccCccEEEEEeCCCCCCC------------CCCC----------
Q psy50 355 MLADIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLVVGNKVDAVPP------------GERV---------- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~-~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~------------~~~~---------- 411 (505)
..||++++|+|++++.+... ...|...+.... + ..|+++|+||+|+... ....
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-P---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-C---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 78999999999999887765 355666665432 2 2599999999998542 1111
Q ss_pred CCC-CeEEEeccCcc-cHHHHHHHHHHHHhh
Q psy50 412 TEE-YDLLISATRGT-GLAQLKEKVQDMILK 440 (505)
Q Consensus 412 ~~~-~~v~iSA~~g~-gi~eL~~~I~~~l~~ 440 (505)
... .++++||++|. |++++|..+...+.+
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 033 58999999998 899999999887754
No 164
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.60 E-value=1.3e-14 Score=139.48 Aligned_cols=143 Identities=20% Similarity=0.132 Sum_probs=98.9
Q ss_pred EcCCCCCHHHHHHHHhCCCCCCccceeeeee--eeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHhh
Q psy50 282 VGYTNCGKTTLIKALTDDDSLVPRNQLFATL--DVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAMLA 357 (505)
Q Consensus 282 VG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl--d~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~A 357 (505)
+|.+|||||||+++++.... ...+. .|. +........ .....+.+|||+|.- .|.. ....++.+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~~~~-~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e---------~~~~l~~~~~~~a 68 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYV-ATLGVEVHPLVFHTNRGPIRFNVWDTAGQE---------KFGGLRDGYYIQG 68 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CCCCC-CceeEEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHHHhcCC
Confidence 69999999999999986542 12221 122 211111111 235789999999932 2221 22456789
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEeccCcccHHH
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA~~g~gi~e 429 (505)
|++++|+|++++.+......|...+.... . ..|+++|+||+|+....... ....++++||++|.|+++
T Consensus 69 d~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~---~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 69 QCAIIMFDVTARVTYKNVPNWHRDLVRVC-E---NIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEK 144 (200)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhC-C---CCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999887776666777666542 2 35999999999985432111 145799999999999999
Q ss_pred HHHHHHHHHhh
Q psy50 430 LKEKVQDMILK 440 (505)
Q Consensus 430 L~~~I~~~l~~ 440 (505)
++++|.+.+.+
T Consensus 145 ~F~~l~~~i~~ 155 (200)
T smart00176 145 PFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 165
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=4.9e-15 Score=163.61 Aligned_cols=145 Identities=26% Similarity=0.190 Sum_probs=100.3
Q ss_pred cCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEE
Q psy50 283 GYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIH 362 (505)
Q Consensus 283 G~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~ 362 (505)
|+||||||||+|+|++.. ..+++.+.+|.+........ ++..+.++||||+.+-.+....+.+....-....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999986 45788888888765544433 4567899999997653222222222222222246899999
Q ss_pred EeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCcccHHHHHHH
Q psy50 363 VVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTGLAQLKEK 433 (505)
Q Consensus 363 VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~gi~eL~~~ 433 (505)
|+|+++.... ..... .+.+.+ .|+++|+||+|+....... ...+++++||++|+|++++++.
T Consensus 79 VvDat~ler~--l~l~~-ql~~~~------~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 79 VVDASNLERN--LYLTL-QLLELG------IPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred EecCCcchhh--HHHHH-HHHhcC------CCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 9999875321 22222 222222 5999999999986433211 1468999999999999999999
Q ss_pred HHHHH
Q psy50 434 VQDMI 438 (505)
Q Consensus 434 I~~~l 438 (505)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98764
No 166
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.60 E-value=8.6e-15 Score=136.28 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|.+|+|||||++++.+... ..++..++.+......... ....+.+|||+|... ...+.. ..+..
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~~~~~ 71 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE--FDKLRP------LCYPD 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh--hccccc------cccCC
Confidence 689999999999999999987542 2333333333221112222 246788999999532 111111 13457
Q ss_pred hceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC----------C--C-----------C
Q psy50 357 ADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE----------R--V-----------T 412 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~----------~--~-----------~ 412 (505)
+|++++|+|++++.+.... +.+...+.... ...|+++|+||+|+..... . . .
T Consensus 72 a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 72 TDVFLLCFSVVNPSSFQNISEKWIPEIRKHN----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 9999999999998776544 34554444321 1359999999999864321 0 0 0
Q ss_pred CCCeEEEeccCcccHHHHHHHHH
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQ 435 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~ 435 (505)
..+++++||++|.|++++++.+.
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 23799999999999999998874
No 167
>KOG0094|consensus
Probab=99.59 E-value=1.1e-14 Score=135.65 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=110.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i 354 (505)
.+|+++|..++|||||+++++-.. ....-+...++|.......+ .....+++|||+| .|.|+. .-.++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG---------QERFrslipsY~ 92 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG---------QERFRSLIPSYI 92 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEeccc---------HHHHhhhhhhhc
Confidence 689999999999999999998764 21212222233433333222 3457899999999 345544 23557
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
+++.+++.|+|+++..+.++...|++-+..-.-.+ +.-+++|+||.||.+...... ...++.+||+.|
T Consensus 93 Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g 170 (221)
T KOG0094|consen 93 RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAG 170 (221)
T ss_pred cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCC
Confidence 88999999999999999888777766555432221 136789999999988755321 457899999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+..|+..|...+++.
T Consensus 171 ~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 171 ENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCHHHHHHHHHHhccCc
Confidence 99999999999988653
No 168
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.59 E-value=5.5e-15 Score=134.40 Aligned_cols=148 Identities=21% Similarity=0.222 Sum_probs=95.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeec-CCCCCcchhhh----hHH
Q psy50 279 VAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN-IPTTLLEPFKV----TLE 352 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~-lp~~lie~f~~----tle 352 (505)
|+++|.+|||||||+|.|++.. ........+.|..+... .....+.++||||+... .|....+.+.. .+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999432 22233344444443221 12238899999997542 11111122211 122
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------------CCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------------VTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------------~~~~~~v~ 418 (505)
.....+++++++|..++.... ...+..++...+ .|+++|+||+|+...... ....++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~-~~~~~~~l~~~~------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEI-DLEMLDWLEELG------IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHh-HHHHHHHHHHcC------CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 223467899999988764332 334556666554 389999999999654321 11357899
Q ss_pred EeccCcccHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~ 437 (505)
+||+++.|++++++.|.++
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999999875
No 169
>PTZ00258 GTP-binding protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=151.17 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC----------------cceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN----------------RLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~----------------~~~v~l~DT~Gfi~ 337 (505)
....+|+|||.||||||||||+|++.. +.+++++|+|+++.......++ ..++.|+||||++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 567899999999999999999999987 6789999999998776554432 23689999999986
Q ss_pred cCCCCCcchh-hhhHHHHHhhceeEEEeeCC
Q psy50 338 NIPTTLLEPF-KVTLEDAMLADIIIHVVDVS 367 (505)
Q Consensus 338 ~lp~~lie~f-~~tle~i~~ADliL~VvD~s 367 (505)
.... .+.+ ..++..++.+|+++||+|++
T Consensus 98 ga~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4321 2222 45678889999999999985
No 170
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=5.4e-15 Score=142.65 Aligned_cols=137 Identities=26% Similarity=0.252 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccce------------------------------eeeeeeeeeeccccCCcceE
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQ------------------------------LFATLDVTTHEGMLPNRLRI 327 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~------------------------------~ftTld~t~~~~~~~~~~~v 327 (505)
+|+|+|++|+|||||+|+|+........+. ...|++....... ..+.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence 489999999999999999986543322111 2234444332222 356789
Q ss_pred EEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 328 LYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 328 ~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.++||||+.. +. ..+...+..+|++++|+|++++... +...+..++...+. +++|+|+||+|+...
T Consensus 80 ~liDTpG~~~-----~~---~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~~~-----~~iIvviNK~D~~~~ 145 (208)
T cd04166 80 IIADTPGHEQ-----YT---RNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLLGI-----RHVVVAVNKMDLVDY 145 (208)
T ss_pred EEEECCcHHH-----HH---HHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHcCC-----CcEEEEEEchhcccC
Confidence 9999999521 11 2234556789999999999876533 33344455555543 257889999998753
Q ss_pred CCC---------------C--CCCCeEEEeccCcccHHH
Q psy50 408 GER---------------V--TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 408 ~~~---------------~--~~~~~v~iSA~~g~gi~e 429 (505)
... . ...+++++||++|.|+++
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 146 SEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 210 0 023589999999999874
No 171
>KOG0098|consensus
Probab=99.59 E-value=1.4e-14 Score=133.86 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=115.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..++.++|.+|+|||+||.+++........+ ..-+++.-.+.+.. ....++.+|||+| .|.|++ +-+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaG---------qe~frsv~~sy 75 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAG---------QESFRSVTRSY 75 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCC---------cHHHHHHHHHH
Confidence 4688999999999999999999886333323 22233333333322 3567899999999 455644 5677
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
++.|-..|+|+|++...++.....|+.-++..+.++ ..+++++||+||....+... ...+..+||++
T Consensus 76 Yr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N---mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt 152 (216)
T KOG0098|consen 76 YRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN---MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKT 152 (216)
T ss_pred hccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC---cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhh
Confidence 889999999999999988888888888777775444 37899999999987765432 45678999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
++|+++.+......+...
T Consensus 153 ~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 153 AENVEEAFINTAKEIYRK 170 (216)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999888877654
No 172
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.58 E-value=3.5e-14 Score=126.77 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=93.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCc--ceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR--LRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~--~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
.+|+++|++|+|||||+|+|++.. .........|.+........ ++ ..+.++||||.... ..+. ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~------~~~~--~~~~ 71 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDY------RAIR--RLYY 71 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccc------hHHH--HHHH
Confidence 579999999999999999999987 44555556666544332222 33 67899999994321 1111 1223
Q ss_pred HhhceeEEEeeCCCC-ChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------CCCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNP-DYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------VTEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~-~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~~~~~~v~iSA~~ 423 (505)
..++.++.++|.... ....... .+...+...... ..|+++|+||+|+...... ....+++++||++
T Consensus 72 ~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 72 RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCC
Confidence 456677777776544 2211111 222223322211 3599999999999764211 1145799999999
Q ss_pred cccHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQ 435 (505)
Q Consensus 424 g~gi~eL~~~I~ 435 (505)
|.|+++++++|.
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999999874
No 173
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=2.4e-14 Score=132.66 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=90.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhc
Q psy50 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLAD 358 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~AD 358 (505)
|+++|.+|||||||++++++.... ..+. .|........ ...+..+.+|||+|.- . ...+ ....+..||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~-pt~g~~~~~i-~~~~~~l~i~Dt~G~~-----~-~~~~--~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVV-PTTGFNSVAI-PTQDAIMELLEIGGSQ-----N-LRKY--WKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--cccc-ccCCcceEEE-eeCCeEEEEEECCCCc-----c-hhHH--HHHHHhhCC
Confidence 789999999999999999987422 2221 1111111111 1246789999999932 1 1111 234577899
Q ss_pred eeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------C-----CCCCeEEEeccC-
Q psy50 359 IIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------V-----TEEYDLLISATR- 423 (505)
Q Consensus 359 liL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~-----~~~~~v~iSA~~- 423 (505)
++++|+|++++........+ +..+.. .....|+++|+||+|+...... . ....++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~---l~~~~~-~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (164)
T cd04162 70 GLIFVVDSADSERLPLARQE---LHQLLQ-HPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDD 145 (164)
T ss_pred EEEEEEECCCHHHHHHHHHH---HHHHHh-CCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCC
Confidence 99999999987644333322 222210 0123699999999998654321 0 124578889998
Q ss_pred -----cccHHHHHHHHHH
Q psy50 424 -----GTGLAQLKEKVQD 436 (505)
Q Consensus 424 -----g~gi~eL~~~I~~ 436 (505)
++|++++++.+..
T Consensus 146 ~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 146 GSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CChhHHHHHHHHHHHHhc
Confidence 9999999988753
No 174
>KOG0394|consensus
Probab=99.57 E-value=1.4e-14 Score=133.64 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=110.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCC----CccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSL----VPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF 347 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~----~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f 347 (505)
.++...+|.|.|.+|+|||||||+++..+.. .+-..-|-|.++.+ ......+++|||+|. |.|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V----d~~~vtlQiWDTAGQ---------ERF 71 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV----DDRSVTLQIWDTAGQ---------ERF 71 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE----cCeEEEEEEEecccH---------HHh
Confidence 3456789999999999999999999876411 01112233444332 124567899999993 223
Q ss_pred hh-hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCCC-------------C
Q psy50 348 KV-TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGERV-------------T 412 (505)
Q Consensus 348 ~~-tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~~-------------~ 412 (505)
.+ -...++.||.+++|+|+.++.+.+..+.|.+.+-.. ...+...-|.|+++||+|+....... .
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG 151 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC
Confidence 22 122357899999999999998888888887654433 32233345999999999986633211 1
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
..|+|++|||...|+++.++.+......
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHh
Confidence 5689999999999999999999988765
No 175
>KOG0087|consensus
Probab=99.57 E-value=2.3e-14 Score=135.10 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=112.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
...+|+++|.+|+|||-||.+++..... ..+...-+.++.++.... ......++|||+|. |.|++ +-.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~-~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ---------ERyrAitSa 82 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFS-LESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ---------ERYRAITSA 82 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccC-cccccceeEEEEeeceeecCcEEEEeeecccch---------hhhccccch
Confidence 4568999999999999999999987632 333333333333333222 24568899999993 33322 445
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~ 422 (505)
+++.|-..++|+|++...+++....|+..|+...-+ +.++++|+||+||........ ...++++||+
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl 159 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSAL 159 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccc
Confidence 677899999999999988888777777777765433 458999999999987444321 4578999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
++.|+++.++.+...+...
T Consensus 160 ~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEIYKI 178 (222)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 9999999998888877643
No 176
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.57 E-value=4.8e-14 Score=134.12 Aligned_cols=137 Identities=24% Similarity=0.198 Sum_probs=85.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccce---------------eeeeeeeeeeccccCCcceEEEEeeeeeeecCCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ---------------LFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT 341 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~---------------~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~ 341 (505)
..|+++|.+|+|||||+|+|++........+ ...|........ ..++..+.++||||...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV-TYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE-EECCEEEEEEECCCcHH----
Confidence 3799999999999999999996311111111 111221111111 12467889999999431
Q ss_pred CCcchhh-hhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC----------
Q psy50 342 TLLEPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------- 410 (505)
Q Consensus 342 ~lie~f~-~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------- 410 (505)
|. .....+..+|++++|+|+++... .+...+...+...+ .|+++|+||+|+......
T Consensus 78 -----~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~~~------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 78 -----FGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALELG------LKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred -----HHHHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHHcC------CCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 21 23445778999999999987532 22333333333322 489999999999643210
Q ss_pred --------CCCCCeEEEeccCcccHHHH
Q psy50 411 --------VTEEYDLLISATRGTGLAQL 430 (505)
Q Consensus 411 --------~~~~~~v~iSA~~g~gi~eL 430 (505)
....+++++||++|.|+.++
T Consensus 146 ~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHhCCccccCccCEEEeehhcccccccc
Confidence 00347899999999877554
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.56 E-value=3.1e-14 Score=157.10 Aligned_cols=146 Identities=27% Similarity=0.309 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--CCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDS--LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~--~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i 354 (505)
.|+++|++|+|||||+|+|++... .........|.++.......+ +..+.+|||||. +.| ..+...+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-~~~v~~iDtPGh---------e~f~~~~~~g~ 71 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-DYRLGFIDVPGH---------EKFISNAIAGG 71 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-CEEEEEEECCCH---------HHHHHHHHhhh
Confidence 689999999999999999998531 111122344555443333333 478899999993 223 2345567
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCC---------------C-CCCCeE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGER---------------V-TEEYDL 417 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~---------------~-~~~~~v 417 (505)
..+|++++|+|++++... +......++..+++ | +++|+||+|+.+.... . ...+++
T Consensus 72 ~~aD~aILVVDa~~G~~~-qT~ehl~il~~lgi------~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 72 GGIDAALLVVDADEGVMT-QTGEHLAVLDLLGI------PHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred ccCCEEEEEEECCCCCcH-HHHHHHHHHHHcCC------CeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 789999999999986433 23334456666654 5 9999999999764321 0 035799
Q ss_pred EEeccCcccHHHHHHHHHHHHhh
Q psy50 418 LISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
++||++|.|++++++.|.+.+..
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHh
Confidence 99999999999999999888754
No 178
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.56 E-value=4.6e-14 Score=129.15 Aligned_cols=148 Identities=23% Similarity=0.243 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee-eeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT-LDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT-ld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|+|||||++++.+.... .++..+. .+........ .....+.+|||+|. +....+. ...+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~------~~~~~~~--~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ------ERFDSLR--DIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETTS------GGGHHHH--HHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--ccccccccccccccccccccccccccccccccc------ccccccc--ccccc
Confidence 5899999999999999999987522 2222221 2222222211 34567999999992 1122221 23467
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+......|...+..... ...|+++|+||+|+....... ...+++.+||+++.
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 147 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGE 147 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTT
T ss_pred cccccccccccccccccccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCC
Confidence 89999999999998877766677666665543 235999999999987633321 14689999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|+.+++..+.+.+
T Consensus 148 ~v~~~f~~~i~~i 160 (162)
T PF00071_consen 148 NVKEIFQELIRKI 160 (162)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998876
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.56 E-value=3.2e-14 Score=156.61 Aligned_cols=147 Identities=19% Similarity=0.236 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
.+.|+|+++|++|+|||||+++|.+.... .......|.+.......+.++..+.||||||... +..++ ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~------F~~~r--~rg 155 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA------FTSMR--ARG 155 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc------hhhHH--Hhh
Confidence 35689999999999999999999987532 3333334444333323333344899999999421 11121 234
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C-----CCCCeE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V-----TEEYDL 417 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~-----~~~~~v 417 (505)
+..+|++++|+|++++.... .......+...+ .|+++++||+|+...... . ...+++
T Consensus 156 a~~aDiaILVVda~dgv~~q-T~e~i~~~~~~~------vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v 228 (587)
T TIGR00487 156 AKVTDIVVLVVAADDGVMPQ-TIEAISHAKAAN------VPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFV 228 (587)
T ss_pred hccCCEEEEEEECCCCCCHh-HHHHHHHHHHcC------CCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEE
Confidence 66799999999998765333 223333343333 499999999998643210 0 013689
Q ss_pred EEeccCcccHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~ 436 (505)
++||++|+|+++|+++|..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999864
No 180
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.55 E-value=1e-13 Score=152.41 Aligned_cols=147 Identities=27% Similarity=0.334 Sum_probs=93.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee-------eeeeeccc---c-------CCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL-------DVTTHEGM---L-------PNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl-------d~t~~~~~---~-------~~~~~v~l~DT~Gfi~ 337 (505)
+.|.|+++|++|+|||||+|+|++.... .......|. +....... . .....+.||||||.-
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~-~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e- 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA-KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE- 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc-cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH-
Confidence 4689999999999999999999987532 111111111 11000000 0 001248899999932
Q ss_pred cCCCCCcchhhh-hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKV-TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------- 409 (505)
Q Consensus 338 ~lp~~lie~f~~-tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------- 409 (505)
.|.. ....+..+|++++|+|+++..... .......+...+ .|+++|+||+|+.....
T Consensus 81 --------~f~~l~~~~~~~aD~~IlVvD~~~g~~~q-t~e~i~~l~~~~------vpiIVv~NK~Dl~~~~~~~~~~~f 145 (590)
T TIGR00491 81 --------AFTNLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRMYK------TPFVVAANKIDRIPGWRSHEGRPF 145 (590)
T ss_pred --------hHHHHHHHHHhhCCEEEEEEECCcCCCHh-HHHHHHHHHHcC------CCEEEEEECCCccchhhhccCchH
Confidence 2211 223457899999999998754332 223334444433 48999999999964210
Q ss_pred ------------------------------C-----------CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 410 ------------------------------R-----------VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 410 ------------------------------~-----------~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
. ....+++|+||++|+|+++|+++|....
T Consensus 146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 0024789999999999999999987644
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.55 E-value=3.7e-14 Score=158.54 Aligned_cols=148 Identities=22% Similarity=0.287 Sum_probs=100.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc---CCcceEEEEeeeeeeecCCCCCcchhhhh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML---PNRLRILYVDTIGFISNIPTTLLEPFKVT 350 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~---~~~~~v~l~DT~Gfi~~lp~~lie~f~~t 350 (505)
.+.+.|+|+|++|+|||||+++|++.... .......|.++......+ ..+..+.||||||+ +.|...
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh---------e~F~~m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH---------EAFSSM 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcH---------HHHHHH
Confidence 46789999999999999999999986532 222222333222211111 13578999999994 234332
Q ss_pred -HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------C--------CC
Q psy50 351 -LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------V--------TE 413 (505)
Q Consensus 351 -le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~--------~~ 413 (505)
...+..+|++++|+|++++.... .......+...+ .|+|+|+||+|+...... . ..
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~Q-T~E~I~~~k~~~------iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQ-TIEAINYIQAAN------VPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChh-hHHHHHHHHhcC------ceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCC
Confidence 34577899999999998764432 222333343333 499999999998753210 0 02
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHH
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
.+++++||++|.|+++|++.|....
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhhh
Confidence 4789999999999999999998754
No 182
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=5.5e-14 Score=134.51 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=94.2
Q ss_pred CEEEEEcCCCCCHHHHHH-HHhCCCCC---Cccceeeeee--eeee-e-------c-cccCCcceEEEEeeeeeeecCCC
Q psy50 277 PTVAVVGYTNCGKTTLIK-ALTDDDSL---VPRNQLFATL--DVTT-H-------E-GMLPNRLRILYVDTIGFISNIPT 341 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN-~L~g~~~~---~~~d~~ftTl--d~t~-~-------~-~~~~~~~~v~l~DT~Gfi~~lp~ 341 (505)
.+|+++|.+|||||||++ ++.+.... ....+..+.. +... . . ..-.....+.+|||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 579999999999999996 55543210 1111111110 1000 0 0 0112357889999999532
Q ss_pred CCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCC-------------
Q psy50 342 TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPP------------- 407 (505)
Q Consensus 342 ~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~------------- 407 (505)
.++ ...++.||++++|+|++++.+.+... .|...++... + ..|+++|+||+||...
T Consensus 79 ----~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~---~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 79 ----KDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P---RVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred ----hhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C---CCCEEEEEEchhccccccchhhhcccccc
Confidence 111 11356799999999999988776554 4656555432 2 3599999999998642
Q ss_pred ------CCCC----------CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 408 ------GERV----------TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 408 ------~~~~----------~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
.... ...+++++||++|.|++++++.+.+.
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111 04579999999999999999998753
No 183
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.54 E-value=4.2e-14 Score=156.67 Aligned_cols=148 Identities=24% Similarity=0.236 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--CCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDS--LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA 354 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~--~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i 354 (505)
.|+++|++|+|||||+|+|+|.+. .........|.+........+++..+.|+||||+ +.| ..++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh---------e~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH---------EKFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH---------HHHHHHHHHHh
Confidence 689999999999999999998531 1112223445544332233345667899999994 233 3455667
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------------CCCCeEEE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------------TEEYDLLI 419 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------------~~~~~v~i 419 (505)
..+|++++|+|+.++.. .+......++..++. .++++|+||+|+.+..... ...+++++
T Consensus 73 ~~~D~~lLVVda~eg~~-~qT~ehl~il~~lgi-----~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~V 146 (614)
T PRK10512 73 GGIDHALLVVACDDGVM-AQTREHLAILQLTGN-----PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVT 146 (614)
T ss_pred hcCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC-----CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 88999999999987643 344555667776664 1468999999997542210 12579999
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
||++|.|+++|++.|.+....
T Consensus 147 SA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 147 AATEGRGIDALREHLLQLPER 167 (614)
T ss_pred eCCCCCCCHHHHHHHHHhhcc
Confidence 999999999999999887643
No 184
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=7.1e-14 Score=132.16 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
+|+++|++|||||||+++|...... .....+..+......... ....+.++||+|.... .. ... ..+..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--~~-~~~-----~~~~~ 72 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY--ER-LRP-----LSYSK 72 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhc--cc-cch-----hhcCC
Confidence 7999999999999999999854322 111111111111111111 2356789999995321 11 111 12457
Q ss_pred hceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCC--------C-C------------CCC
Q psy50 357 ADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGE--------R-V------------TEE 414 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~--------~-~------------~~~ 414 (505)
+|++++++|++++.+..... .|...+.... + +.|+++|+||+|+..... . . ...
T Consensus 73 a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-~---~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 73 AHVILIGFAVDTPDSLENVRTKWIEEVRRYC-P---NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 89999999998877655443 3555554332 2 359999999999854211 0 0 024
Q ss_pred CeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+++++||++|.|++++++.+.+.+..
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999987743
No 185
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=5.3e-14 Score=134.65 Aligned_cols=136 Identities=21% Similarity=0.117 Sum_probs=89.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCC------c---------cceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLV------P---------RNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT 341 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~------~---------~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~ 341 (505)
..|+++|++|+|||||+++|++..... . ......|.+....... .++.++.|+||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD---- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHHH----
Confidence 469999999999999999998641000 0 0011223332221111 2467899999999631
Q ss_pred CCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------
Q psy50 342 TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------- 411 (505)
Q Consensus 342 ~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------- 411 (505)
+ ...+...+..+|++++|+|++.+.. .+...+...+...+. .++|+|+||+|+....+..
T Consensus 78 -~---~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~~~-----~~iIvviNK~D~~~~~~~~~~~~~~i~~~ 147 (195)
T cd01884 78 -Y---IKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQVGV-----PYIVVFLNKADMVDDEELLELVEMEVREL 147 (195)
T ss_pred -H---HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC-----CcEEEEEeCCCCCCcHHHHHHHHHHHHHH
Confidence 1 2334566778999999999987643 345556667777664 1378999999997432210
Q ss_pred --------CCCCeEEEeccCcccH
Q psy50 412 --------TEEYDLLISATRGTGL 427 (505)
Q Consensus 412 --------~~~~~v~iSA~~g~gi 427 (505)
...+++|+||++|.|+
T Consensus 148 l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 148 LSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHhcccccCCeEEEeeCccccCC
Confidence 1257999999999985
No 186
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.53 E-value=3.9e-14 Score=128.00 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=87.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
.+|.+||++|||||||+++|.+......+.+ .+. ..+ .++||||=.-..| .+. ++-+....+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq-----~i~-----~~~----~~IDTPGEyiE~~-~~y---~aLi~ta~d 63 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQ-----AIE-----YYD----NTIDTPGEYIENP-RFY---HALIVTAQD 63 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccc-----eeE-----ecc----cEEECChhheeCH-HHH---HHHHHHHhh
Confidence 4799999999999999999999763222221 111 111 3599999322222 222 223344567
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~g 426 (505)
||++++|.|++++...-. -+....+.+|+|-|++|+|+...+.... ...+|++|+.+|+|
T Consensus 64 ad~V~ll~dat~~~~~~p----------P~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eG 133 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFP----------PGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEG 133 (143)
T ss_pred CCEEEEEecCCCCCccCC----------chhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcC
Confidence 999999999998643210 0111223469999999999984332211 34689999999999
Q ss_pred HHHHHHHHH
Q psy50 427 LAQLKEKVQ 435 (505)
Q Consensus 427 i~eL~~~I~ 435 (505)
+++|+++|.
T Consensus 134 i~eL~~~L~ 142 (143)
T PF10662_consen 134 IEELKDYLE 142 (143)
T ss_pred HHHHHHHHh
Confidence 999999885
No 187
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.53 E-value=1.2e-13 Score=129.65 Aligned_cols=149 Identities=26% Similarity=0.250 Sum_probs=99.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
+...+|+++|.+|||||||++.|...... . ...|.......... .+..+.++|..|-. .....+. ..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~--~--~~pT~g~~~~~i~~-~~~~~~~~d~gG~~-----~~~~~w~---~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS--E--TIPTIGFNIEEIKY-KGYSLTIWDLGGQE-----SFRPLWK---SY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE--E--EEEESSEEEEEEEE-TTEEEEEEEESSSG-----GGGGGGG---GG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc--c--cCcccccccceeee-CcEEEEEEeccccc-----cccccce---ee
Confidence 45678999999999999999999875411 1 22233333332222 56789999999931 1111111 12
Q ss_pred HHhhceeEEEeeCCCCChH-HHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------C--CCCCeEE
Q psy50 354 AMLADIIIHVVDVSNPDYL-QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------V--TEEYDLL 418 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~-~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------~--~~~~~v~ 418 (505)
+..+|.+++|+|++++... +..+.+..++..... ...|+++++||.|+...... . ....++.
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~---~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPEL---KDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFS 155 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGG---TTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEE
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhc---ccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEe
Confidence 4569999999999987643 233344455553332 34699999999998764321 0 1335899
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+||++|+|+.+.++||.+.+
T Consensus 156 ~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHhcC
Confidence 99999999999999998753
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.52 E-value=8.6e-14 Score=156.90 Aligned_cols=147 Identities=21% Similarity=0.256 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...|.|+|+|++|+|||||+++|.+... ..+.....|.++......+ .+..+.||||||+.. +..+. ...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~------F~~m~--~rg 357 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEA------FTAMR--ARG 357 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEE-CCEEEEEEECCCCcc------chhHH--Hhh
Confidence 4679999999999999999999987653 2333333444433332322 357899999999421 11221 234
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC--C---------C-----CCCCeE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE--R---------V-----TEEYDL 417 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~--~---------~-----~~~~~v 417 (505)
+..+|++++|+|+++..... .......+...+ .|+|+|+||+|+...+. . . ...+++
T Consensus 358 a~~aDiaILVVdAddGv~~q-T~e~i~~a~~~~------vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~v 430 (787)
T PRK05306 358 AQVTDIVVLVVAADDGVMPQ-TIEAINHAKAAG------VPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFV 430 (787)
T ss_pred hhhCCEEEEEEECCCCCCHh-HHHHHHHHHhcC------CcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEE
Confidence 66799999999998764332 233334444443 49999999999965321 0 0 024799
Q ss_pred EEeccCcccHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~ 437 (505)
++||++|.|+++|+++|...
T Consensus 431 pvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 431 PVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEeCCCCCCchHHHHhhhhh
Confidence 99999999999999999753
No 189
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.52 E-value=1.4e-13 Score=134.30 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|++||.+|||||||++++++... ..++..+..+........ .....+.+|||+|--. ...++ -..+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~------~~~l~--~~~~~ 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY------YDNVR--PLAYP 71 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHH------HHHHh--HHhcc
Confidence 3689999999999999999998652 223322221111111111 2346788999999311 11111 22356
Q ss_pred hhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------CC----------C
Q psy50 356 LADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------RV----------T 412 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~~----------~ 412 (505)
.+|++++|+|++++.+.+.. ..|...+.... + ..|+++|+||+|+..... .. .
T Consensus 72 ~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~---~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~ 147 (222)
T cd04173 72 DSDAVLICFDISRPETLDSVLKKWQGETQEFC-P---NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C---CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence 89999999999998776654 33444443322 2 359999999999864210 00 0
Q ss_pred C-CCeEEEeccCccc-HHHHHHHHHHHHh
Q psy50 413 E-EYDLLISATRGTG-LAQLKEKVQDMIL 439 (505)
Q Consensus 413 ~-~~~v~iSA~~g~g-i~eL~~~I~~~l~ 439 (505)
. .+++++||+++.| ++++|........
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 2 3799999999985 9999999888654
No 190
>KOG1490|consensus
Probab=99.52 E-value=4.9e-14 Score=146.97 Aligned_cols=183 Identities=18% Similarity=0.179 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEE
Q psy50 251 QKLKKALNKLKGQREMMRNKK-QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY 329 (505)
Q Consensus 251 ~~l~~eL~~l~~~r~~~r~~r-~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l 329 (505)
.+....|+.+...|...+.-. ......+..|+|+||+||||++|.++..+ +.+.++.|||..+.+.... ......++
T Consensus 142 k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~d-ykYlrwQV 219 (620)
T KOG1490|consen 142 KRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLD-YKYLRWQV 219 (620)
T ss_pred HHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhh-hheeeeee
Confidence 444555666666665443332 35677899999999999999999999987 6789999999876654432 23567889
Q ss_pred EeeeeeeecCCC--CCcchhh-hhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 330 VDTIGFISNIPT--TLLEPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 330 ~DT~Gfi~~lp~--~lie~f~-~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
+||||+..+.-. +.+|... .++.+++. .+||+.|+|..+...- +.-.++.+.+. +-..++|+|+|+||||+..
T Consensus 220 iDTPGILD~plEdrN~IEmqsITALAHLra--aVLYfmDLSe~CGySv-a~QvkLfhsIK-pLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 220 IDTPGILDRPEEDRNIIEMQIITALAHLRS--AVLYFMDLSEMCGYSV-AAQVKLYHSIK-PLFANKVTILVLNKIDAMR 295 (620)
T ss_pred cCCccccCcchhhhhHHHHHHHHHHHHhhh--hheeeeechhhhCCCH-HHHHHHHHHhH-HHhcCCceEEEeecccccC
Confidence 999999864221 2233322 24555544 4899999998765431 11122333332 1233569999999999988
Q ss_pred CCCCCC-------------CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 407 PGERVT-------------EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 407 ~~~~~~-------------~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
...... ..+++.+|+.+.+|+-+++..-++.+.
T Consensus 296 ~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 296 PEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 776432 356899999999999888777766655
No 191
>KOG0080|consensus
Probab=99.51 E-value=9.6e-14 Score=125.35 Aligned_cols=151 Identities=20% Similarity=0.172 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeee--eeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA--TLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TL 351 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft--Tld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tl 351 (505)
..+|.+||.+|+||||||-+++... . .+...+ +.|..+..... ....++-+|||+| .|.|+. |-
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~-f--d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG---------qErFRtLTp 78 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT-F--DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG---------QERFRTLTP 78 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc-c--CccCCceeeeeEEEEEEEEcCceEEEEEEeccc---------hHhhhccCH
Confidence 3689999999999999999998764 1 222222 33444433333 2456889999999 344543 55
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA 421 (505)
..++.|..+|+|+|++..++......|++.+.-+.-.+ +.-.++|+||+|......... ..-++++||
T Consensus 79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~--diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SA 156 (209)
T KOG0080|consen 79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP--DIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSA 156 (209)
T ss_pred hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc--cHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcch
Confidence 67888999999999999988877777777776664322 235679999999764333211 345899999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
++.+|+...++.+.+.+.+
T Consensus 157 kt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 157 KTRENVQCCFEELVEKIIE 175 (209)
T ss_pred hhhccHHHHHHHHHHHHhc
Confidence 9999999999999888743
No 192
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.51 E-value=9.2e-14 Score=122.29 Aligned_cols=143 Identities=22% Similarity=0.181 Sum_probs=92.6
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhce
Q psy50 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADI 359 (505)
Q Consensus 281 LVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADl 359 (505)
++|++|+|||||+|+|++.... ......+..+........ .....+.++||+|...... .....+..+|.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS--------LRRLYYRGADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh--------HHHHHhcCCCE
Confidence 5899999999999999987631 112212212222111111 2367899999999543111 11344567999
Q ss_pred eEEEeeCCCCChHHHHHHH-HHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccCcccH
Q psy50 360 IIHVVDVSNPDYLQQKQHV-DETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATRGTGL 427 (505)
Q Consensus 360 iL~VvD~s~~~~~~~~~~v-~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~g~gi 427 (505)
+++|+|++++........+ ...+..... ...|+++|+||+|+....... ...+++++||.++.|+
T Consensus 72 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLILINKEG---ENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhcc---CCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 9999999987655433332 112222222 235999999999987654321 1467999999999999
Q ss_pred HHHHHHHH
Q psy50 428 AQLKEKVQ 435 (505)
Q Consensus 428 ~eL~~~I~ 435 (505)
++++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999875
No 193
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=3.4e-13 Score=129.00 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=95.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec--cccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE--GMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~--~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
.+|+++|.+|||||||+|+|++......+........++... ...+....+.++||||+-.. ....+.+.. ...+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~--~~~~~~~l~-~~~~ 78 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST--AFPPDDYLE-EMKF 78 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc--cCCHHHHHH-HhCc
Confidence 469999999999999999999965332222211111111111 11122347899999997542 111222211 1114
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------------------
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------------------ 410 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------------------ 410 (505)
..+|++++|.|. +.. .....+.+.+...+ +|+++|+||+|+......
T Consensus 79 ~~~d~~l~v~~~--~~~-~~d~~~~~~l~~~~------~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 79 SEYDFFIIISST--RFS-SNDVKLAKAIQCMG------KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL 149 (197)
T ss_pred cCcCEEEEEeCC--CCC-HHHHHHHHHHHHhC------CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence 568998888543 222 23445666776653 489999999999643220
Q ss_pred ----CCCCCeEEEecc--CcccHHHHHHHHHHHHhhh
Q psy50 411 ----VTEEYDLLISAT--RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 411 ----~~~~~~v~iSA~--~g~gi~eL~~~I~~~l~~~ 441 (505)
...+++|.+|+. .+.|+..|.+.|...+++.
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 014579999998 5789999999999988754
No 194
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=1.5e-13 Score=131.22 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccc-eeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-C-CCcchhhh-hHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRN-QLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-T-TLLEPFKV-TLED 353 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d-~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~-~lie~f~~-tle~ 353 (505)
+|+|+|.||||||||+|+|+|.....++. ....|.+........ .+.++.++|||||..... . .+...+.. ....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 68999999999999999999987443332 223444443333222 567899999999875321 0 11111111 1122
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCCC-------C---------CCCe
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGERV-------T---------EEYD 416 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~~-------~---------~~~~ 416 (505)
...+|++++|+|+.+ .... ...+.+.+.++ | .....++++|++++|.+...... . ...+
T Consensus 81 ~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEE-EEQAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred CCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 345799999999987 3333 34445555543 4 22224899999999987644210 0 1123
Q ss_pred EEE-----eccCcccHHHHHHHHHHHHhh
Q psy50 417 LLI-----SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 417 v~i-----SA~~g~gi~eL~~~I~~~l~~ 440 (505)
+.+ |+..+.++++|++.|.+++.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 333 466789999999999999865
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.47 E-value=2e-13 Score=145.57 Aligned_cols=142 Identities=22% Similarity=0.248 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc------------------------------eeeeeeeeeeeccccCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN------------------------------QLFATLDVTTHEGMLPN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d------------------------------~~ftTld~t~~~~~~~~ 323 (505)
+....|+++|++|+|||||+++|+......... ....|++....... .+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TD 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cC
Confidence 345679999999999999999998543221111 23445555443332 25
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCC--CChHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSN--PDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~--~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
+..+.|+||||+. .+.. .+...+..+|++++|+|+++ ... .+.......+..++. .|+++|+||
T Consensus 83 ~~~i~liDtpG~~-----~~~~---~~~~~~~~aD~~ilVvDa~~~~~~~-~~~~~~~~~~~~~~~-----~~iivviNK 148 (425)
T PRK12317 83 KYYFTIVDCPGHR-----DFVK---NMITGASQADAAVLVVAADDAGGVM-PQTREHVFLARTLGI-----NQLIVAINK 148 (425)
T ss_pred CeEEEEEECCCcc-----cchh---hHhhchhcCCEEEEEEEcccCCCCC-cchHHHHHHHHHcCC-----CeEEEEEEc
Confidence 6789999999942 1211 12334567999999999987 322 223334455555543 368999999
Q ss_pred CCCCCCCCC---------------CC----CCCeEEEeccCcccHHHH
Q psy50 402 VDAVPPGER---------------VT----EEYDLLISATRGTGLAQL 430 (505)
Q Consensus 402 iDl~~~~~~---------------~~----~~~~v~iSA~~g~gi~eL 430 (505)
+|+...... .. ..+++++||++|.|++++
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 999752210 00 246899999999999873
No 196
>KOG0093|consensus
Probab=99.47 E-value=5.1e-13 Score=119.05 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=110.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc-cCCcceEEEEeeeeeeecCCCCCcchhh-hhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM-LPNRLRILYVDTIGFISNIPTTLLEPFK-VTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~-~~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i 354 (505)
.++.|+|.+.+|||||+-+.++.. .++.-+..-+++...+.+. .....++++|||+|.- .++ -|-..+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE---------ryrtiTTayy 91 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE---------RYRTITTAYY 91 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccch---------hhhHHHHHHh
Confidence 489999999999999999999875 3332222233443333222 2356789999999932 222 255678
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
+.|+.+++++|+++..+....+.|...++.+.-. +.|+|+|.||||+-....... +..+|+.||+.+
T Consensus 92 RgamgfiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 92 RGAMGFILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred hccceEEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence 8999999999999988776666666666655333 359999999999866554321 567899999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|++.+++.+...+-+.
T Consensus 169 inVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDK 185 (193)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999888554
No 197
>KOG0095|consensus
Probab=99.46 E-value=3.4e-13 Score=120.34 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=111.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|++||..|+|||.|..+++....+ ++.-...+.|.-++.+.. .+..++++|||+| .|.|++ |...
T Consensus 7 lfkivlvgnagvgktclvrrftqglfp-pgqgatigvdfmiktvev~gekiklqiwdtag---------qerfrsitqsy 76 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG---------QERFRSITQSY 76 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCC-CCCCceeeeeEEEEEEEECCeEEEEEEeeccc---------hHHHHHHHHHH
Confidence 468999999999999999999987533 333333334433333332 3568899999999 455644 6677
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
++.|+.+++|+|+|-..+....-.|+..++++.-.. .-.|+|+||+|+.+..+.+. ..-++.+||++
T Consensus 77 yrsahalilvydiscqpsfdclpewlreie~yan~k---vlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsake 153 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK---VLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKE 153 (213)
T ss_pred hhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc---eEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccc
Confidence 889999999999997777766666666666653221 24689999999987766432 23478999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
.+|++.|+..+.-.+..
T Consensus 154 a~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999998776643
No 198
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=2.9e-13 Score=143.61 Aligned_cols=152 Identities=24% Similarity=0.258 Sum_probs=97.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ccceeeeeeeeeeec------------------cc-------cCCcceE
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLV--PRNQLFATLDVTTHE------------------GM-------LPNRLRI 327 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~--~~d~~ftTld~t~~~------------------~~-------~~~~~~v 327 (505)
....|+++|++|+|||||+++|++..... ..-.-..|.+..... .. ...+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34579999999999999999998752100 000001111111000 00 0114678
Q ss_pred EEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 328 LYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 328 ~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.++||||.. .+. ..+...+..+|++++|+|++++....+....+..+..++. +|+++|+||+|+...
T Consensus 83 ~liDtPGh~-----~f~---~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi-----~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHE-----TLM---ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGI-----KNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHH-----HHH---HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCC-----CeEEEEEEccccCCH
Confidence 999999942 111 2345556678999999999976412233334455665554 378999999999754
Q ss_pred CCC----------C-----CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 408 GER----------V-----TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 408 ~~~----------~-----~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
... . ...+++++||++|.|+++|+++|...++
T Consensus 150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 150 EKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 211 0 0246899999999999999999998765
No 199
>KOG0079|consensus
Probab=99.46 E-value=6.6e-13 Score=118.44 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=112.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCcccee-eeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-FATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
....|+|.||+|||||+-++.... +.+++. ..+.|..++.+..+ +...+.+|||+| .|.|+. +-..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt--Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG---------qErFrtitsty 77 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT--FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG---------QERFRTITSTY 77 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc--cccceEEEeeeeEEEEEeecCCcEEEEEEeeccc---------HHHHHHHHHHH
Confidence 345789999999999999998764 345544 34566666665554 457899999999 344532 3345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
++..+.+++|+|+++..+......|++.++.- ++. .|-++|+||.|......... ...+|++||+.
T Consensus 78 yrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n-cds---v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe 153 (198)
T KOG0079|consen 78 YRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN-CDS---VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKE 153 (198)
T ss_pred ccCCceEEEEEECcchhhhHhHHHHHHHHHhc-Ccc---ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhh
Confidence 67899999999999988877666665555432 333 48999999999876543321 56789999999
Q ss_pred cccHHHHHHHHHHHHhhhc
Q psy50 424 GTGLAQLKEKVQDMILKAT 442 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~~ 442 (505)
..|++..+..|.+.+....
T Consensus 154 ~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 154 NENVEAMFHCITKQVLQAK 172 (198)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 9999999999999886543
No 200
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=1.2e-12 Score=126.45 Aligned_cols=150 Identities=18% Similarity=0.097 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc---cCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM---LPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~---~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
...+|+++|++|||||||++++...... .. ...|......... ..+...+.+|||+|... ...+ ..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~------~~~~--~~ 76 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE--KK-YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK------FGGL--RD 76 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC--CC-CCCccceEEEEEEEEECCeEEEEEEEECCCchh------hhhh--hH
Confidence 4568999999999999999765433211 11 1122222211111 12457889999999321 1111 12
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEeccC
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISATR 423 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA~~ 423 (505)
..+..+|.+++|+|+++..+......+...+.... . +.|+++|+||+|+....... ....++++||++
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~---~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E---NIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKS 152 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C---CCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCC
Confidence 33557899999999998877655555555444332 2 35899999999986432111 134689999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|.|+++++.+|.+.+.
T Consensus 153 ~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 153 NYNFEKPFLWLARRLT 168 (215)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998874
No 201
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.44 E-value=8.5e-13 Score=140.16 Aligned_cols=154 Identities=25% Similarity=0.270 Sum_probs=99.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC--Cccceeeeeeeeeeeccc------------------cC-------Ccce
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQLFATLDVTTHEGM------------------LP-------NRLR 326 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~ftTld~t~~~~~------------------~~-------~~~~ 326 (505)
+....|+++|+.++|||||+.+|++.... ........|.+....... .. ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 34568999999999999999999874210 000011122222110000 00 0257
Q ss_pred EEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 327 ILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 327 v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
+.++||||.. .+. ..++..+..+|++++|+|++++....+.......+..+++ +|+++|+||+|+..
T Consensus 87 i~liDtPG~~-----~f~---~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i-----~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHE-----TLM---ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGI-----KNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHH-----HHH---HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEEeecccc
Confidence 8999999932 121 2345566678999999999976422223334455555543 36899999999976
Q ss_pred CCCCC---------------CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 407 PGERV---------------TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 407 ~~~~~---------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
..... ...+++++||++|.|+++|++.|.+.+..
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 43210 12578999999999999999999987654
No 202
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.43 E-value=1.6e-12 Score=143.71 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=96.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCc----ccee----------eeeeeeeeecccc----CCcceEEEEeeeeeeec
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVP----RNQL----------FATLDVTTHEGML----PNRLRILYVDTIGFISN 338 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~----~d~~----------ftTld~t~~~~~~----~~~~~v~l~DT~Gfi~~ 338 (505)
-.++|+|++|+|||||+++|+....... .+.. ..|.+...-...+ .....+.||||||...
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d- 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD- 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence 4799999999999999999986531111 1111 1122211111111 1236789999999542
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------- 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------- 410 (505)
.. ......+..||++++|+|++++........+...+. .+ .|+++|+||+|+......
T Consensus 83 ----F~---~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~~------ipiIiViNKiDl~~~~~~~~~~el~~ 148 (595)
T TIGR01393 83 ----FS---YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-ND------LEIIPVINKIDLPSADPERVKKEIEE 148 (595)
T ss_pred ----HH---HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-cC------CCEEEEEECcCCCccCHHHHHHHHHH
Confidence 11 122345677999999999998765443344433332 22 489999999998643210
Q ss_pred -CC--CCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 411 -VT--EEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 411 -~~--~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
.. ..+++++||++|.|+++|+++|.+.++..
T Consensus 149 ~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 149 VIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 00 12589999999999999999999988643
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.42 E-value=2.5e-12 Score=141.87 Aligned_cols=149 Identities=26% Similarity=0.283 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc--cce---eeeeeeeeee----ccccCC-------cceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVP--RNQ---LFATLDVTTH----EGMLPN-------RLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~--~d~---~ftTld~t~~----~~~~~~-------~~~v~l~DT~Gfi~ 337 (505)
.+.|.|+++|++|+|||||+|+|.+...... +.+ ..++.-+... ...... ...+.|+||||..
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e- 82 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE- 82 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH-
Confidence 4578999999999999999999988753211 111 0111100000 000000 0127899999942
Q ss_pred cCCCCCcchhhh-hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKV-TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------- 409 (505)
Q Consensus 338 ~lp~~lie~f~~-tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------- 409 (505)
.|.. ....+..+|++++|+|+++..... .......+...+ .|+++++||+|+.....
T Consensus 83 --------~f~~~~~~~~~~aD~~IlVvDa~~g~~~q-t~e~i~~~~~~~------vpiIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 83 --------AFTNLRKRGGALADIAILVVDINEGFQPQ-TIEAINILKRRK------TPFVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred --------HHHHHHHHhHhhCCEEEEEEECCCCCCHh-HHHHHHHHHHcC------CCEEEEEECcCCchhhhhhcCchH
Confidence 2221 223456799999999998753322 223334444433 48999999999852110
Q ss_pred ------------------------------C-----------CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 410 ------------------------------R-----------VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 410 ------------------------------~-----------~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
. ....+++++||++|+|+++|++.+....
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 0124689999999999999999886533
No 204
>CHL00071 tufA elongation factor Tu
Probab=99.42 E-value=9e-13 Score=139.95 Aligned_cols=148 Identities=21% Similarity=0.129 Sum_probs=98.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc---------------ceeeeeeeeeeeccccCCcceEEEEeeeeeeecC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPR---------------NQLFATLDVTTHEGMLPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~---------------d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l 339 (505)
....|+++|++|+|||||+|+|++......+ -....|.+...... ..++.++.|+||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY-ETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE-ccCCeEEEEEECCChH---
Confidence 4467999999999999999999975211100 11223333322111 1245688999999942
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCCC-------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGERV------- 411 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~~------- 411 (505)
.+ +..+...+..+|++++|+|+..+.. .+...+...+..++. | +|+++||+|+....+..
T Consensus 87 --~~---~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~g~------~~iIvvvNK~D~~~~~~~~~~~~~~l 154 (409)
T CHL00071 87 --DY---VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQVGV------PNIVVFLNKEDQVDDEELLELVELEV 154 (409)
T ss_pred --HH---HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC------CEEEEEEEccCCCCHHHHHHHHHHHH
Confidence 11 2344566778999999999987643 445566677777664 6 77899999997643210
Q ss_pred ---------C--CCCeEEEeccCccc------------------HHHHHHHHHHHH
Q psy50 412 ---------T--EEYDLLISATRGTG------------------LAQLKEKVQDMI 438 (505)
Q Consensus 412 ---------~--~~~~v~iSA~~g~g------------------i~eL~~~I~~~l 438 (505)
. ..+++++||++|.+ +..|++.|.+.+
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 155 RELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 0 25799999999863 467777777654
No 205
>PRK12736 elongation factor Tu; Reviewed
Probab=99.42 E-value=1.2e-12 Score=138.37 Aligned_cols=150 Identities=21% Similarity=0.171 Sum_probs=100.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---------------ccceeeeeeeeeeeccccCCcceEEEEeeeeeeec
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV---------------PRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~---------------~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~ 338 (505)
+....|+++|+.++|||||+++|++..... ..-....|+++..... ..++.++.|+||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~-~~~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY-ETEKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe-cCCCcEEEEEECCCHH--
Confidence 455789999999999999999998742100 0012233444322211 1245688999999942
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCCC------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGERV------ 411 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~~------ 411 (505)
++ +..+...+..+|++++|+|++++.. .+...+...+..+++ | +|+|+||+|+....+..
T Consensus 87 ---~f---~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~g~------~~~IvviNK~D~~~~~~~~~~i~~~ 153 (394)
T PRK12736 87 ---DY---VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQVGV------PYLVVFLNKVDLVDDEELLELVEME 153 (394)
T ss_pred ---HH---HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHcCC------CEEEEEEEecCCcchHHHHHHHHHH
Confidence 11 2334555677999999999987543 344555666766664 5 67899999997433211
Q ss_pred --------C----CCCeEEEeccCcc--------cHHHHHHHHHHHHh
Q psy50 412 --------T----EEYDLLISATRGT--------GLAQLKEKVQDMIL 439 (505)
Q Consensus 412 --------~----~~~~v~iSA~~g~--------gi~eL~~~I~~~l~ 439 (505)
. ..+++++||++|. ++.+|++.|.+.++
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 0 2479999999983 68899999988875
No 206
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.42 E-value=1.5e-12 Score=127.41 Aligned_cols=98 Identities=21% Similarity=0.168 Sum_probs=70.6
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHH--hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAM--LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~--~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
+..+.++||||... .. +.+...+. .+|++++|+|+.++.. .+...+..++...+. |+++|+||
T Consensus 83 ~~~i~liDtpG~~~-----~~---~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~i------p~ivvvNK 147 (224)
T cd04165 83 SKLVTFIDLAGHER-----YL---KTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALNI------PVFVVVTK 147 (224)
T ss_pred CcEEEEEECCCcHH-----HH---HHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC------CEEEEEEC
Confidence 56789999999421 11 22333443 5899999999987654 345667777777664 89999999
Q ss_pred CCCCCCCCCC----------C----------------------------CCCeEEEeccCcccHHHHHHHHHH
Q psy50 402 VDAVPPGERV----------T----------------------------EEYDLLISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 402 iDl~~~~~~~----------~----------------------------~~~~v~iSA~~g~gi~eL~~~I~~ 436 (505)
+|+....... . ..|+|++||.+|+|+++|.+.|..
T Consensus 148 ~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9986543210 0 238999999999999999988854
No 207
>KOG0073|consensus
Probab=99.41 E-value=4.2e-12 Score=115.34 Aligned_cols=149 Identities=25% Similarity=0.171 Sum_probs=100.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..+|.|+|..||||||++++|.+...-.+. .|+-...+... ..+.++.+||.-|.. .+.+.++ .++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~-~~~~~L~iwDvGGq~-----~lr~~W~---nYfe 82 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLE-YKGYTLNIWDVGGQK-----TLRSYWK---NYFE 82 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEE-ecceEEEEEEcCCcc-----hhHHHHH---Hhhh
Confidence 578999999999999999999998622222 22222233322 357899999998832 2222221 2356
Q ss_pred hhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------------CCCCCeEEEe
Q psy50 356 LADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------------VTEEYDLLIS 420 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------------~~~~~~v~iS 420 (505)
.+|.+++|+|.+++...+.. ..+.+.|.+-.+. ..|++++.||.|+...-.. ....+++-+|
T Consensus 83 stdglIwvvDssD~~r~~e~~~~L~~lL~eerla---G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRMRMQECKQELTELLVEERLA---GAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred ccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhc---CCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 79999999999987654332 2333444433322 2599999999999743211 0145789999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|.+|+++.+=+++|...+.+
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 208
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=2.1e-12 Score=126.97 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=110.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..-.|.|+|.||||||||+|+|.+.+.. +-+....+.+++.+.....++..+.+|||||+-+....+ .+.-....+.+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~-~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D-~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVK-EVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD-AEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCc-eeeecccCCCchhhHHhhccccceEEecCCCcccchhhh-HHHHHHHHHHh
Confidence 3445679999999999999999976533 334445555555555444566889999999975422111 11112245567
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------------------
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------------------- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------------------- 411 (505)
...|++++++|+.++...-....+.+++... . ++++++++|.+|...+....
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILG-L----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhc-c----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 7799999999999886544444555554432 2 25899999999987653110
Q ss_pred ----CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 412 ----TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 ----~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+..|++..|+..+.|+++|...+.+.++.
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 04578999999999999999999998863
No 209
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.40 E-value=1.1e-12 Score=127.53 Aligned_cols=137 Identities=24% Similarity=0.260 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcc------------------------------ceeeeeeeeeeeccccCCcceE
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR------------------------------NQLFATLDVTTHEGMLPNRLRI 327 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~------------------------------d~~ftTld~t~~~~~~~~~~~v 327 (505)
.|+++|++|+|||||+.+|+........ .....|++....... ..+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 3899999999999999999643111000 011223333222222 256789
Q ss_pred EEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCCh------HHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 328 LYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDY------LQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 328 ~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~------~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
.++||||+.. +. ..+...+..+|++++|+|++++.. ..+.......+..++. +|+++|+||
T Consensus 80 ~liDtpG~~~-----~~---~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iiivvNK 146 (219)
T cd01883 80 TILDAPGHRD-----FV---PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGV-----KQLIVAVNK 146 (219)
T ss_pred EEEECCChHH-----HH---HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCC-----CeEEEEEEc
Confidence 9999999532 11 234455677999999999988521 1122233334444432 489999999
Q ss_pred CCCCCCC---CC--------------CC----CCCeEEEeccCcccHH
Q psy50 402 VDAVPPG---ER--------------VT----EEYDLLISATRGTGLA 428 (505)
Q Consensus 402 iDl~~~~---~~--------------~~----~~~~v~iSA~~g~gi~ 428 (505)
+|+.... .. .. ..+++++||++|.|++
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 147 MDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9997421 00 00 2469999999999987
No 210
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.39 E-value=2.7e-12 Score=128.90 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC-----Ccc------------ceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSL-----VPR------------NQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~-----~~~------------d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp 340 (505)
.|+++|++|+|||||+|+|+..... .+. .....|++....... ..+.++.++||||+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHH---
Confidence 3899999999999999999632110 000 011122222222222 2467899999999542
Q ss_pred CCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 341 ~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
+. ..+...+..+|++++|+|+++... .+...+...+...+ +|+++++||+|+...
T Consensus 77 --f~---~~~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~~~------~p~ivviNK~D~~~a 131 (270)
T cd01886 77 --FT---IEVERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADRYN------VPRIAFVNKMDRTGA 131 (270)
T ss_pred --HH---HHHHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHHcC------CCEEEEEECCCCCCC
Confidence 11 224556777999999999987653 33455566666554 389999999998753
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.38 E-value=3.2e-12 Score=126.06 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC-------cc----cee------eeeeeeeeeccccCCcceEEEEeeeeeeecCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLV-------PR----NQL------FATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~-------~~----d~~------ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp 340 (505)
.|+++|++|+|||||+++|+...... .+ |.. ..|........ ...+.++.++||||+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~-~~~~~~i~liDTPG~~~--- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF-QWEDTKVNLIDTPGHMD--- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE-EECCEEEEEEeCCCccc---
Confidence 37999999999999999998642110 00 100 00111111111 12467899999999642
Q ss_pred CCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 341 ~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
.. ..+...++.+|.+++|+|+++.... +.+.+.+.+...+ .|+++++||+|+..
T Consensus 77 --f~---~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~~------~P~iivvNK~D~~~ 130 (237)
T cd04168 77 --FI---AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKLN------IPTIIFVNKIDRAG 130 (237)
T ss_pred --hH---HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHcC------CCEEEEEECccccC
Confidence 11 2234567789999999999987543 4556666666554 48999999999874
No 212
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=119.44 Aligned_cols=152 Identities=23% Similarity=0.208 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH-HHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL-EDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl-e~i~ 355 (505)
.+|+++|..|||||||+++|.+...............+............+.+|||+|+. .++... ....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~---------~~~~~~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE---------EYRSLRPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH---------HHHHHHHHHhc
Confidence 689999999999999999999886332222111111111111111125678999999943 232222 3457
Q ss_pred hhceeEEEeeCCC-CChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------CC-C---------
Q psy50 356 LADIIIHVVDVSN-PDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------RV-T--------- 412 (505)
Q Consensus 356 ~ADliL~VvD~s~-~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~~-~--------- 412 (505)
.++.+++++|.+. ....+..+.|...+...... ..|+++|.||+|+..... .. .
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLP 153 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhh
Confidence 8999999999987 44445556666666665422 249999999999987631 10 0
Q ss_pred ---CCCeEEEecc--CcccHHHHHHHHHHHHhh
Q psy50 413 ---EEYDLLISAT--RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 413 ---~~~~v~iSA~--~g~gi~eL~~~I~~~l~~ 440 (505)
...++.+||+ ++.|+++++..+...+..
T Consensus 154 ~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 154 EVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 2238999999 999999999999988854
No 213
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.6e-12 Score=136.31 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=106.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhhh-
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKVT- 350 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~t- 350 (505)
...|.|+++|+--.||||||..+-+.+ +..+.--.-|..+....+.++ +...+.|+|||| .++|...
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG---------HeAFt~mR 72 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG---------HEAFTAMR 72 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCc---------HHHHHHHH
Confidence 357999999999999999999998876 334554445555444444444 347899999999 2344221
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------------CCC
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------------TEE 414 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------------~~~ 414 (505)
-....-+|++++|+|+.+.... |...-.+.++..+. |+++++||+|+...+... ...
T Consensus 73 aRGa~vtDIaILVVa~dDGv~p-QTiEAI~hak~a~v------P~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMP-QTIEAINHAKAAGV------PIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred hcCCccccEEEEEEEccCCcch-hHHHHHHHHHHCCC------CEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCce
Confidence 1224558999999999987644 34444556666654 999999999998553210 034
Q ss_pred CeEEEeccCcccHHHHHHHHHHHH
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
.++|+||++|+|+++|++.|.-..
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHH
Confidence 689999999999999999997654
No 214
>PRK12735 elongation factor Tu; Reviewed
Probab=99.38 E-value=2.3e-12 Score=136.30 Aligned_cols=150 Identities=21% Similarity=0.148 Sum_probs=98.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC------CC---------CccceeeeeeeeeeeccccCCcceEEEEeeeeeeec
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD------SL---------VPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~------~~---------~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~ 338 (505)
+....|+++|++|+|||||+++|++.. .. ........|.+...... ..++.++.|+||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~-~~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY-ETANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE-cCCCcEEEEEECCCHH--
Confidence 345679999999999999999998621 00 00012223444322111 1245688999999952
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE-EEEeCCCCCCCCCCC------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL-VVGNKVDAVPPGERV------ 411 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I-lV~NKiDl~~~~~~~------ 411 (505)
++ +..+...+..+|++++|+|+.+... .+.......+..+++ |.+ +|+||+|+....+..
T Consensus 87 ---~f---~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~gi------~~iivvvNK~Dl~~~~~~~~~~~~e 153 (396)
T PRK12735 87 ---DY---VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGV------PYIVVFLNKCDMVDDEELLELVEME 153 (396)
T ss_pred ---HH---HHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHcCC------CeEEEEEEecCCcchHHHHHHHHHH
Confidence 11 2334556678999999999987543 334445566666554 644 689999997532210
Q ss_pred --------C----CCCeEEEeccCcc----------cHHHHHHHHHHHHh
Q psy50 412 --------T----EEYDLLISATRGT----------GLAQLKEKVQDMIL 439 (505)
Q Consensus 412 --------~----~~~~v~iSA~~g~----------gi~eL~~~I~~~l~ 439 (505)
. ..+++++||++|. ++..|++.|.+.++
T Consensus 154 i~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 0 2578999999984 78899999988764
No 215
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.36 E-value=2.7e-12 Score=137.00 Aligned_cols=142 Identities=23% Similarity=0.262 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc------------------------------cceeeeeeeeeeeccccCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVP------------------------------RNQLFATLDVTTHEGMLPN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~------------------------------~d~~ftTld~t~~~~~~~~ 323 (505)
+....|+++|++|+|||||+++|+....... ......|++....... .+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-TD 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-cC
Confidence 3456799999999999999999985321100 0112334554443332 24
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChH--HHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL--QQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~--~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
+..+.++||||.. .+. ..+...+..+|++++|+|++++... .+......++..++. .|+++|+||
T Consensus 84 ~~~i~iiDtpGh~-----~f~---~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~-----~~iIVviNK 150 (426)
T TIGR00483 84 KYEVTIVDCPGHR-----DFI---KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGI-----NQLIVAINK 150 (426)
T ss_pred CeEEEEEECCCHH-----HHH---HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCC-----CeEEEEEEC
Confidence 6789999999932 111 2234456779999999999987322 112222334444442 379999999
Q ss_pred CCCCCCCCC---------------C----CCCCeEEEeccCcccHHH
Q psy50 402 VDAVPPGER---------------V----TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 402 iDl~~~~~~---------------~----~~~~~v~iSA~~g~gi~e 429 (505)
+|+...+.. . ...+++++||++|.|+++
T Consensus 151 ~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 151 MDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 999742210 0 024689999999999986
No 216
>KOG0086|consensus
Probab=99.35 E-value=7.7e-12 Score=112.17 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=105.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee--eeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT--LDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TL 351 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT--ld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tl 351 (505)
..++.++|+.|.|||.|+..+..... .|....| .+...+-+.. ....++++|||+| .|.|++ +.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf---kDdssHTiGveFgSrIinVGgK~vKLQIWDTAG---------QErFRSVtR 76 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF---KDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG---------QERFRSVTR 76 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh---cccccceeeeeecceeeeecCcEEEEEEeeccc---------HHHHHHHHH
Confidence 46789999999999999999987641 1222222 2222221111 1457899999999 456754 56
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA 421 (505)
.+++.|-..++|+|+++.++......|+.-.+.+..++ .-+++++||.||-...+.. ....+.++||
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n---IvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa 153 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN---IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 153 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc---EEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecc
Confidence 77889999999999999888776666665555554333 3688899999997765531 1345789999
Q ss_pred cCcccHHHHHHHHHHHHh
Q psy50 422 TRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~ 439 (505)
++|+|+++-+-...+.+.
T Consensus 154 ~TGeNVEEaFl~c~~tIl 171 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTIL 171 (214)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 999999998877666554
No 217
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=2.4e-12 Score=129.10 Aligned_cols=86 Identities=29% Similarity=0.383 Sum_probs=68.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCc----------------ceEEEEeeeeeeecCCCC
Q psy50 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR----------------LRILYVDTIGFISNIPTT 342 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~----------------~~v~l~DT~Gfi~~lp~~ 342 (505)
|+|||.||||||||+|+|++... .+++++|+|+++....+..++. .++.++||||++....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~-- 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS-- 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc--
Confidence 58999999999999999999974 7899999999987766555442 2589999999986432
Q ss_pred Ccchh-hhhHHHHHhhceeEEEeeCC
Q psy50 343 LLEPF-KVTLEDAMLADIIIHVVDVS 367 (505)
Q Consensus 343 lie~f-~~tle~i~~ADliL~VvD~s 367 (505)
..+.+ ...+.+++.+|+++||+|++
T Consensus 78 ~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 78 KGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 22222 45678889999999999985
No 218
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=1.4e-12 Score=134.15 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=80.4
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++|+||+|..... .. -+..||++++|++...++. ...... +.-+ ..-++|+||+|
T Consensus 148 g~d~viieT~Gv~qs~----~~-------i~~~aD~vlvv~~p~~gd~---iq~~k~-----gi~E---~aDIiVVNKaD 205 (332)
T PRK09435 148 GYDVILVETVGVGQSE----TA-------VAGMVDFFLLLQLPGAGDE---LQGIKK-----GIME---LADLIVINKAD 205 (332)
T ss_pred CCCEEEEECCCCccch----hH-------HHHhCCEEEEEecCCchHH---HHHHHh-----hhhh---hhheEEeehhc
Confidence 5789999999976311 11 2446999999976333322 222111 1111 13489999999
Q ss_pred CCCCCCC--------------C----C-CCCeEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCC
Q psy50 404 AVPPGER--------------V----T-EEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKH 464 (505)
Q Consensus 404 l~~~~~~--------------~----~-~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~ 464 (505)
+...... . . ..+++++||++|.|+++|.+.|.+++. |+|+.
T Consensus 206 l~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~--------------------~l~~s 265 (332)
T PRK09435 206 GDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA--------------------ALTAS 265 (332)
T ss_pred ccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH--------------------HhccC
Confidence 8764311 0 0 157999999999999999999999872 56666
Q ss_pred CeEEEeeecCCCCeEEEEEEEecHHHHHHHHH
Q psy50 465 TAVSNIREDDTSAEHLLLDVVMTDVIMNKFKH 496 (505)
Q Consensus 465 ~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 496 (505)
+.+++... ......+..++++.++.++..
T Consensus 266 g~l~~~r~---~~~~~~v~elire~l~~~~~~ 294 (332)
T PRK09435 266 GEFAARRR---EQQVDWMWEMVEEGLLDRLFA 294 (332)
T ss_pred ChHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 76665200 011223467777777777644
No 219
>KOG1487|consensus
Probab=99.34 E-value=5.5e-12 Score=122.33 Aligned_cols=208 Identities=23% Similarity=0.205 Sum_probs=140.0
Q ss_pred HHHHHHHhhccCHHHH-----HHHHHHcCcchHhhhhcccccCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy50 193 IVIQIFKAHAKTREAR-----LQIAIAELPYLWTRYRTIEDATNMNITKGFLDSKRMVLMEREQKLKKALNKLKGQREMM 267 (505)
Q Consensus 193 lil~If~~~A~t~eak-----lQv~lA~l~~~~~rl~~~~~g~~~g~ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~ 267 (505)
-|-+|-+..|+|...| +-.-.|.+..+++.+... |||+.|.|.+..
T Consensus 5 ki~~ie~emaktqKNkat~~hlgllkaklaKlrreli~~-g~~g~~~gfDV~---------------------------- 55 (358)
T KOG1487|consen 5 KIKEIEDEMARTQKNKATSFHLGLLKAKLAKLRRELITG-GGGGGGGGFDVA---------------------------- 55 (358)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhccC-CCCCCCCCccce----------------------------
Confidence 3677888888887643 444444555556666552 222222243432
Q ss_pred HhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh
Q psy50 268 RNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF 347 (505)
Q Consensus 268 r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f 347 (505)
+.+..+|+++|.|.+|||||+..|++.. ..+..+.|+|+- ++.......+.++.+.|.||+++......-..
T Consensus 56 -----ktg~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~-~vpG~~~y~gaKiqlldlpgiiegakdgkgrg- 127 (358)
T KOG1487|consen 56 -----KTGDARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLT-TVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG- 127 (358)
T ss_pred -----eecceeeeEEecCccchhhhhhhhcCCC-CccccccceeEE-EecceEeccccceeeecCcchhcccccCCCCc-
Confidence 1134589999999999999999999986 447788888873 44433335678999999999997533221111
Q ss_pred hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc--------------------------------------
Q psy50 348 KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE-------------------------------------- 389 (505)
Q Consensus 348 ~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~-------------------------------------- 389 (505)
+..+.-.+.|.+++.|+|+-.|.... ..+...|+.+|+.-
T Consensus 128 ~qviavartcnli~~vld~~kp~~hk--~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~ 205 (358)
T KOG1487|consen 128 KQVIAVARTCNLIFIVLDVLKPLSHK--KIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRI 205 (358)
T ss_pred cEEEEEeecccEEEEEeeccCcccHH--HHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhh
Confidence 22333355699999999998886542 33444454443210
Q ss_pred -----------------------ccCccEEEEEeCCCCCCCCCCC---CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 390 -----------------------KILEHVLVVGNKVDAVPPGERV---TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 390 -----------------------~~~~p~IlV~NKiDl~~~~~~~---~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
....|++.++||+|-+.-++.. ..+..+|+||-++.|+++|++.+.+++.
T Consensus 206 hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 206 HSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcch
Confidence 1246799999999988766532 2567899999999999999999999884
No 220
>PLN03127 Elongation factor Tu; Provisional
Probab=99.34 E-value=7.7e-12 Score=134.00 Aligned_cols=150 Identities=25% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC------CCC---------ccceeeeeeeeeeeccccCCcceEEEEeeeeeeec
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD------SLV---------PRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~------~~~---------~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~ 338 (505)
+....|+++|+.|+|||||+++|++.. ... .+.....|++....... .++.++.|+||||+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~-- 135 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHA-- 135 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCcc--
Confidence 355789999999999999999998431 000 01112334444322221 245689999999953
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCCC------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGERV------ 411 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~~------ 411 (505)
.++ ..+...+..+|++++|+|+.++.. .+...+...+..++. | +|+++||+|+....+..
T Consensus 136 ---~f~---~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~gi------p~iIvviNKiDlv~~~~~~~~i~~~ 202 (447)
T PLN03127 136 ---DYV---KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVGV------PSLVVFLNKVDVVDDEELLELVEME 202 (447)
T ss_pred ---chH---HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHcCC------CeEEEEEEeeccCCHHHHHHHHHHH
Confidence 222 333445567999999999987643 345666777777764 6 57899999997532210
Q ss_pred --------C----CCCeEEEecc---Cccc-------HHHHHHHHHHHHh
Q psy50 412 --------T----EEYDLLISAT---RGTG-------LAQLKEKVQDMIL 439 (505)
Q Consensus 412 --------~----~~~~v~iSA~---~g~g-------i~eL~~~I~~~l~ 439 (505)
. ..+++++||+ +|.| +..|++.|.+.++
T Consensus 203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 0 2467888876 4555 7889999988764
No 221
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.34 E-value=1.3e-11 Score=118.73 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=77.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc------CCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML------PNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~------~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
+|+++|.+|+|||||++++++.... ....+..+.+...+.... .....+.+|||+|.-. ...+ .-
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~-~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~------~~~l--~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL-GRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES------VKST--RA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh------HHHH--HH
Confidence 6899999999999999999987522 111111111111111111 1345789999999311 1122 22
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCc----------------ccccCccEEEEEeCCCCCCC
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLEL----------------EEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~----------------~~~~~~p~IlV~NKiDl~~~ 407 (505)
..+..+|++++|+|++++.+.+....|...+..... ......|+++|+||+|+...
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 346789999999999999888777766665543210 01124699999999999754
No 222
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.34 E-value=3.2e-12 Score=111.15 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC-Cccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSL-VPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~-~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
+|+++|.+|||||||+++|++.... ........+.......... .....+.++|++|.... .... ...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~--~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF------YSQH--QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH------HCTS--HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee------cccc--cchhh
Confidence 5899999999999999999987633 0011111111111111111 12234789999995221 1100 11166
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
.+|++++|+|++++.+......+..++..+.-. ..+.|+++|+||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 799999999999987766655566666655321 12359999999998
No 223
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.34 E-value=5.1e-12 Score=135.45 Aligned_cols=153 Identities=19% Similarity=0.264 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCC---------Cccceeeeeeee---------eeeccccCC-----------
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSL---------VPRNQLFATLDV---------TTHEGMLPN----------- 323 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~---------~~~d~~ftTld~---------t~~~~~~~~----------- 323 (505)
++....|+++|+-..|||||+.+|++.... .+-+.-|+.... +... ..+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQ-SYGSSKPDNPPCPGC 109 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCccccc-ccCCCcccccccccc
Confidence 345578999999999999999999986421 111222222210 0000 0000
Q ss_pred ------cceEEEEeeeeeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 324 ------RLRILYVDTIGFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 324 ------~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
...+.|+||||. +.| +.++..+..+|++++|+|+.++....+....+.++..+++ +|+|
T Consensus 110 ~~~~~~~~~i~~IDtPGH---------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi-----~~iI 175 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGH---------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKL-----KHII 175 (460)
T ss_pred cccccccceEeeeeCCCH---------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCC-----CcEE
Confidence 246899999993 223 3456667789999999999875323334444556666765 3789
Q ss_pred EEEeCCCCCCCCCC---------------CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 397 VVGNKVDAVPPGER---------------VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 397 lV~NKiDl~~~~~~---------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+|+||+|+...... ....+++|+||++|.|++.|++.|.+.++.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 99999999753221 014579999999999999999999987653
No 224
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.33 E-value=1e-11 Score=124.51 Aligned_cols=114 Identities=20% Similarity=0.156 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC--cccee---------------eeeeeeeeeccccCCcceEEEEeeeeeeecCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLV--PRNQL---------------FATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~--~~d~~---------------ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp 340 (505)
.|+|+|++|||||||+|+|+...... .+... ..|......... ..+..+.++||||+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHH---
Confidence 37999999999999999997542111 11110 111111111111 2467889999999532
Q ss_pred CCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 341 ~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
. ...+...+..+|++++|+|+++..... ...+.+.+...+ .|.++++||+|+...
T Consensus 77 --f---~~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~~~~~------~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 --F---VGETRAALRAADAALVVVSAQSGVEVG-TEKLWEFADEAG------IPRIIFINKMDRERA 131 (268)
T ss_pred --H---HHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHHcC------CCEEEEEECCccCCC
Confidence 1 123455677899999999998865433 334444555443 489999999998643
No 225
>PRK00049 elongation factor Tu; Reviewed
Probab=99.33 E-value=5.9e-12 Score=133.17 Aligned_cols=149 Identities=21% Similarity=0.152 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC------C---------ccceeeeeeeeeeeccccCCcceEEEEeeeeeeecC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL------V---------PRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~------~---------~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l 339 (505)
....|+++|++|+|||||+++|++.... . ..-....|++...... ..++.++.|+||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~-~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY-ETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE-cCCCeEEEEEECCCHH---
Confidence 4567999999999999999999873100 0 0012233444332221 1246789999999953
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE-EEEeCCCCCCCCCCC-------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL-VVGNKVDAVPPGERV------- 411 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I-lV~NKiDl~~~~~~~------- 411 (505)
.+ +..+...+..+|++++|+|+..+.. .+...+...+..++. |.+ +++||+|+....+..
T Consensus 87 --~f---~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~g~------p~iiVvvNK~D~~~~~~~~~~~~~~i 154 (396)
T PRK00049 87 --DY---VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGV------PYIVVFLNKCDMVDDEELLELVEMEV 154 (396)
T ss_pred --HH---HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHcCC------CEEEEEEeecCCcchHHHHHHHHHHH
Confidence 11 2334455678999999999987643 345556667776664 765 689999997532210
Q ss_pred -----------CCCCeEEEeccCcc----------cHHHHHHHHHHHHh
Q psy50 412 -----------TEEYDLLISATRGT----------GLAQLKEKVQDMIL 439 (505)
Q Consensus 412 -----------~~~~~v~iSA~~g~----------gi~eL~~~I~~~l~ 439 (505)
...+++++||++|. |+..|++.|.+.+.
T Consensus 155 ~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 12578999999975 57888888887653
No 226
>PLN03126 Elongation factor Tu; Provisional
Probab=99.33 E-value=1.2e-11 Score=133.23 Aligned_cols=137 Identities=22% Similarity=0.121 Sum_probs=90.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCC---------------CccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSL---------------VPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~---------------~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.+....|+++|++|+|||||+++|++.... ........|++....... .++..+.|+||||+..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH
Confidence 345678999999999999999999963110 001112223333222211 2466889999999532
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCCC-----
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGERV----- 411 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~~----- 411 (505)
+ +..+...+..+|++++|+|+.++.. .+...+...+..+|+ | +|+++||+|+....+..
T Consensus 157 -----f---~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~gi------~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 157 -----Y---VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVGV------PNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred -----H---HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC------CeEEEEEecccccCHHHHHHHHHH
Confidence 1 1334556678999999999987653 345556667777764 5 78899999997633210
Q ss_pred -------------CCCCeEEEeccCcc
Q psy50 412 -------------TEEYDLLISATRGT 425 (505)
Q Consensus 412 -------------~~~~~v~iSA~~g~ 425 (505)
...+++++||.+|.
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccc
Confidence 13478999999984
No 227
>KOG0091|consensus
Probab=99.33 E-value=1.8e-11 Score=111.09 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=113.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
.+..+||.+-+|||||+..++....+.-+| +..+.|...+.+.+. ..+++++|||+| .|.|++ |...
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtag---------qerfrsitksy 78 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAG---------QERFRSITKSY 78 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccc---------hHHHHHHHHHH
Confidence 356789999999999999999876443332 222333333333332 356889999999 455644 6777
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
++++-.+++|+|+++..+.++.+.|.+.... .+......-..+|+.|+||........ ...++++||++
T Consensus 79 yrnsvgvllvyditnr~sfehv~~w~~ea~m-~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~ 157 (213)
T KOG0091|consen 79 YRNSVGVLLVYDITNRESFEHVENWVKEAAM-ATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKN 157 (213)
T ss_pred hhcccceEEEEeccchhhHHHHHHHHHHHHH-hcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccC
Confidence 8899999999999999888777666554332 222111223678999999986654321 45799999999
Q ss_pred cccHHHHHHHHHHHHhhhcCcceEEEEe
Q psy50 424 GTGLAQLKEKVQDMILKATGRKNITMRV 451 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~~~~~~~~l~~ 451 (505)
|.|+++-+..|.+.+...+....+.+..
T Consensus 158 g~NVeEAF~mlaqeIf~~i~qGeik~ed 185 (213)
T KOG0091|consen 158 GCNVEEAFDMLAQEIFQAIQQGEIKLED 185 (213)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCceeeee
Confidence 9999999999998887655443444443
No 228
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=1.7e-11 Score=123.04 Aligned_cols=114 Identities=21% Similarity=0.121 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCc--cce------eeeeeee-------------eeeccccCCcceEEEEeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVP--RNQ------LFATLDV-------------TTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~--~d~------~ftTld~-------------t~~~~~~~~~~~v~l~DT~Gf 335 (505)
..|+|+|++|+|||||+++|+....... +.. -.++.|. ..... ...+..+.++||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCCc
Confidence 3699999999999999999985321110 000 0111111 00011 124688999999994
Q ss_pred eecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 336 i~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
.. .. ..+...+..+|.+++|+|+++... .+.+.+...+...+ .|+++++||+|+..
T Consensus 82 ~d-----f~---~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~~------~P~iivvNK~D~~~ 137 (267)
T cd04169 82 ED-----FS---EDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLRG------IPIITFINKLDREG 137 (267)
T ss_pred hH-----HH---HHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhcC------CCEEEEEECCccCC
Confidence 31 11 124556778999999999987643 33444555554433 48999999999754
No 229
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.32 E-value=7.7e-12 Score=132.70 Aligned_cols=137 Identities=23% Similarity=0.234 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcc------------------cee--------------eeeeeeeeeccccCCcc
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR------------------NQL--------------FATLDVTTHEGMLPNRL 325 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~------------------d~~--------------ftTld~t~~~~~~~~~~ 325 (505)
+|+++|+.|+|||||+++|+........ ... ..|+++...... ..+.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCCe
Confidence 6899999999999999999754322111 000 112333222222 2456
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
++.|+||||+. ++. ..+...+..+|++++|+|++.+.. .+......++..++. +++++|+||+|+.
T Consensus 81 ~~~liDtPGh~-----~f~---~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~~~-----~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHE-----QYT---RNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLLGI-----RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHH-----HHH---HHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHcCC-----CcEEEEEEecccc
Confidence 89999999942 111 223455678999999999987653 334445566666664 3689999999997
Q ss_pred CCCCC-----------------CCCCCeEEEeccCcccHHH
Q psy50 406 PPGER-----------------VTEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 406 ~~~~~-----------------~~~~~~v~iSA~~g~gi~e 429 (505)
..+.. ....+++|+||++|.|+++
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 147 DYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 53221 0123699999999999986
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.32 E-value=8e-12 Score=139.66 Aligned_cols=140 Identities=23% Similarity=0.255 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc----------eeee----------------------eeeeeeeccccC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN----------QLFA----------------------TLDVTTHEGMLP 322 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d----------~~ft----------------------Tld~t~~~~~~~ 322 (505)
....|+++|++|+|||||+|+|+........+ ...+ |++....... .
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~-~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA-T 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc-c
Confidence 45679999999999999999998754322211 1111 2222211111 2
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
++.++.|+||||+.. +. ......+..+|++++|+|+..+... +......++..++. +++++|+||+
T Consensus 102 ~~~~~~liDtPG~~~-----f~---~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~~~-----~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-----YT---RNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLLGI-----RHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHH-----HH---HHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHhCC-----CeEEEEEEec
Confidence 456889999999421 11 2233456789999999999876432 23344555666653 3789999999
Q ss_pred CCCCCCCC-----------------CCCCCeEEEeccCcccHHH
Q psy50 403 DAVPPGER-----------------VTEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 403 Dl~~~~~~-----------------~~~~~~v~iSA~~g~gi~e 429 (505)
|+...+.. ....+++|+||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99752210 0123589999999999984
No 231
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.31 E-value=1.5e-11 Score=136.22 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=95.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCc----cceee----------eeeeeeeecccc----CCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVP----RNQLF----------ATLDVTTHEGML----PNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~----~d~~f----------tTld~t~~~~~~----~~~~~v~l~DT~Gfi~ 337 (505)
...++|+|+.++|||||+.+|+....... ++... .|.....-...+ .....+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 45799999999999999999976321110 11111 111111101111 1256789999999643
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----C-
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----V- 411 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----~- 411 (505)
... .....+..+|.+++|+|++++........+.. +...+ .|+++|+||+|+...... .
T Consensus 87 -----F~~---~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~~~------lpiIvViNKiDl~~a~~~~v~~ei~ 151 (600)
T PRK05433 87 -----FSY---EVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALEND------LEIIPVLNKIDLPAADPERVKQEIE 151 (600)
T ss_pred -----HHH---HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHHCC------CCEEEEEECCCCCcccHHHHHHHHH
Confidence 111 12344667999999999998754433333322 22222 489999999998643210 0
Q ss_pred -----CCCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 412 -----TEEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 412 -----~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
...+++++||++|.|+++|+++|.+.++..
T Consensus 152 ~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 152 DVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 012489999999999999999999988643
No 232
>PRK10218 GTP-binding protein; Provisional
Probab=99.31 E-value=2.5e-11 Score=134.11 Aligned_cols=151 Identities=22% Similarity=0.175 Sum_probs=100.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce---------------eeeeeeeeeeccccCCcceEEEEeeeeeeecC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ---------------LFATLDVTTHEGMLPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~---------------~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l 339 (505)
....|+|+|+.|+|||||+++|+.......... ...|........ ..++..+.++||||...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~d-- 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHAD-- 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcch--
Confidence 345799999999999999999996421111110 111221111111 13567899999999532
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------- 410 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------- 410 (505)
.. ..+...+..+|.+++|+|+++... .+...+...+...+ .|.++|+||+|+......
T Consensus 81 ---f~---~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~~g------ip~IVviNKiD~~~a~~~~vl~ei~~l 147 (607)
T PRK10218 81 ---FG---GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFAYG------LKPIVVINKVDRPGARPDWVVDQVFDL 147 (607)
T ss_pred ---hH---HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHHcC------CCEEEEEECcCCCCCchhHHHHHHHHH
Confidence 11 123345678999999999987643 34455555555554 388999999998654321
Q ss_pred ------C---CCCCeEEEeccCcc----------cHHHHHHHHHHHHhhh
Q psy50 411 ------V---TEEYDLLISATRGT----------GLAQLKEKVQDMILKA 441 (505)
Q Consensus 411 ------~---~~~~~v~iSA~~g~----------gi~eL~~~I~~~l~~~ 441 (505)
. ...|++++||++|. |+..|++.|.+.++..
T Consensus 148 ~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 148 FVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 0 13579999999998 6899999999988654
No 233
>KOG1145|consensus
Probab=99.31 E-value=9.9e-12 Score=131.09 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=105.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
.+..|.|.|+|+-..||||||.+|-+...+ .+..-..|..+-...+.+++|..+.|.||||. .-+.+|++ .
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH------aAF~aMRa--R 220 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGH------AAFSAMRA--R 220 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcH------HHHHHHHh--c
Confidence 357899999999999999999999888633 33333344444333455678899999999993 22333332 3
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------------CCCCe
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------------TEEYD 416 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------------~~~~~ 416 (505)
...-+|++++|+.+.+.-... .....+..+.- +.|+|+++||||....+... -...+
T Consensus 221 GA~vtDIvVLVVAadDGVmpQ-T~EaIkhAk~A------~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQ-TLEAIKHAKSA------NVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQV 293 (683)
T ss_pred cCccccEEEEEEEccCCccHh-HHHHHHHHHhc------CCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeE
Confidence 345689999999998876543 32223333332 34999999999977544210 03468
Q ss_pred EEEeccCcccHHHHHHHHHHHH
Q psy50 417 LLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l 438 (505)
+||||++|+|++.|.+.+.-..
T Consensus 294 ipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 294 IPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEeecccCCChHHHHHHHHHHH
Confidence 9999999999999999997654
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=9.3e-12 Score=131.60 Aligned_cols=150 Identities=21% Similarity=0.168 Sum_probs=93.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC------CCC---------ccceeeeeeeeeeeccccCCcceEEEEeeeeeeec
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD------SLV---------PRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~------~~~---------~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~ 338 (505)
+....|+++|+.|+|||||+++|++.. ... .......|.+...... ..++.++.|+||||+..
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~-~~~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY-ETENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE-cCCCEEEEEEECCchHH-
Confidence 345679999999999999999998431 000 0011233444322211 12456789999999531
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------- 411 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------- 411 (505)
+. ..++..+..+|++++|+|+.++.. .+.......+..+++ .++|+|+||+|+....+..
T Consensus 88 ----f~---~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~gi-----~~iIvvvNK~Dl~~~~~~~~~~~~~i 154 (394)
T TIGR00485 88 ----YV---KNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQVGV-----PYIVVFLNKCDMVDDEELLELVEMEV 154 (394)
T ss_pred ----HH---HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC-----CEEEEEEEecccCCHHHHHHHHHHHH
Confidence 11 334555677999999999987543 334455566666654 1355789999997543210
Q ss_pred -------C----CCCeEEEeccCcc--------cHHHHHHHHHHHH
Q psy50 412 -------T----EEYDLLISATRGT--------GLAQLKEKVQDMI 438 (505)
Q Consensus 412 -------~----~~~~v~iSA~~g~--------gi~eL~~~I~~~l 438 (505)
. ..+++++||++|. ++..|++.|.+.+
T Consensus 155 ~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 155 RELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred HHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 0 1579999999885 3455666555443
No 235
>KOG0083|consensus
Probab=99.31 E-value=1.5e-12 Score=114.26 Aligned_cols=146 Identities=19% Similarity=0.211 Sum_probs=105.7
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec--ccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHh
Q psy50 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE--GML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAML 356 (505)
Q Consensus 281 LVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~--~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ 356 (505)
++|.+++|||.|+-++-... ...++. ..|..+..+. +.+ ....++++|||+| .|.|++ |-..++.
T Consensus 2 llgds~~gktcllir~kdga-fl~~~f-istvgid~rnkli~~~~~kvklqiwdtag---------qerfrsvt~ayyrd 70 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGA-FLAGNF-ISTVGIDFRNKLIDMDDKKVKLQIWDTAG---------QERFRSVTHAYYRD 70 (192)
T ss_pred ccccCccCceEEEEEeccCc-eecCce-eeeeeeccccceeccCCcEEEEEEeeccc---------hHHHhhhhHhhhcc
Confidence 68999999999987654332 112222 2222222221 112 2457899999999 455644 5677889
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCccc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGTG 426 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~g 426 (505)
||.+++++|+.+..+.+..+.|+..+.+++-.. ..+.+++||||+........ ..|+.++||++|-|
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~---v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~n 147 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA---VALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFN 147 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhh---HhHhhhccccccchhhccccchHHHHHHHHCCCceecccccccc
Confidence 999999999999999888888888888876433 36789999999966443221 57899999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy50 427 LAQLKEKVQDMILK 440 (505)
Q Consensus 427 i~eL~~~I~~~l~~ 440 (505)
++--+-.|.+.+.+
T Consensus 148 vd~af~~ia~~l~k 161 (192)
T KOG0083|consen 148 VDLAFLAIAEELKK 161 (192)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999999888754
No 236
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.31 E-value=7.4e-12 Score=129.72 Aligned_cols=88 Identities=28% Similarity=0.365 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCc----------------ceEEEEeeeeeeecCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR----------------LRILYVDTIGFISNIP 340 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~----------------~~v~l~DT~Gfi~~lp 340 (505)
.+|+|||.||||||||+|+|++.. +.+++++|+|+++.......++. .++.++||||++....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 589999999999999999999998 67899999999987655444432 3589999999986332
Q ss_pred CCCcchh-hhhHHHHHhhceeEEEeeCC
Q psy50 341 TTLLEPF-KVTLEDAMLADIIIHVVDVS 367 (505)
Q Consensus 341 ~~lie~f-~~tle~i~~ADliL~VvD~s 367 (505)
..+.+ ...+..++.+|+++||+|++
T Consensus 82 --~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 --KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred --hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 22222 45688899999999999986
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.31 E-value=9.7e-12 Score=134.30 Aligned_cols=143 Identities=22% Similarity=0.206 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce----------e----------------------eeeeeeeeecccc
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ----------L----------------------FATLDVTTHEGML 321 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~----------~----------------------ftTld~t~~~~~~ 321 (505)
+....|+++|++|+|||||+++|+........+. . ..|+++......
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~- 103 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS- 103 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-
Confidence 4568999999999999999999986532211110 0 112333222221
Q ss_pred CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 322 PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 322 ~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
.++.++.|+||||+. .+. ..+...+..+|++++|+|+..+... +......++..++. +|+|+|+||
T Consensus 104 ~~~~~i~~iDTPGh~-----~f~---~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~l~~~lg~-----~~iIvvvNK 169 (474)
T PRK05124 104 TEKRKFIIADTPGHE-----QYT---RNMATGASTCDLAILLIDARKGVLD-QTRRHSFIATLLGI-----KHLVVAVNK 169 (474)
T ss_pred cCCcEEEEEECCCcH-----HHH---HHHHHHHhhCCEEEEEEECCCCccc-cchHHHHHHHHhCC-----CceEEEEEe
Confidence 246789999999932 122 2234446789999999999876432 23334455565553 378999999
Q ss_pred CCCCCCCCC------------------CCCCCeEEEeccCcccHHHHH
Q psy50 402 VDAVPPGER------------------VTEEYDLLISATRGTGLAQLK 431 (505)
Q Consensus 402 iDl~~~~~~------------------~~~~~~v~iSA~~g~gi~eL~ 431 (505)
+|+...+.. ....+++|+||++|.|++++.
T Consensus 170 iD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 170 MDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred eccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 999743220 012568999999999998753
No 238
>KOG0395|consensus
Probab=99.31 E-value=1.2e-11 Score=118.56 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|+|||+|...+.+... ..++..+.-+...+.... .....+.++||+|... ...++ -..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~------~~~~~--~~~~ 72 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE------FSAMR--DLYI 72 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCCccc------ChHHH--HHhh
Confidence 35799999999999999999888752 344433333333333222 2446778999999221 11111 2235
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|..++|+++++..+++....+.+.+.+.. .....|+++|+||+|+........ .++++++||+.+
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~--~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQLREQILRVK--GRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 67899999999999988876666665553322 222359999999999976433211 456999999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.++++++..|...+..
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 239
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.30 E-value=2.7e-11 Score=133.85 Aligned_cols=148 Identities=22% Similarity=0.191 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcc-----ce----------eeeeeeeeeeccccCCcceEEEEeeeeeeecCCCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR-----NQ----------LFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT 342 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~-----d~----------~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~ 342 (505)
.|+|+|+.++|||||+++|+........ +. -..|+........ ..+..+.++||||+..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHAD----- 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHH-----
Confidence 6999999999999999999853211111 10 0112221111121 2467899999999532
Q ss_pred CcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--C---------
Q psy50 343 LLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--V--------- 411 (505)
Q Consensus 343 lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--~--------- 411 (505)
+. ......+..+|.+++|+|+++.. ..+...++..+...++ |.++|+||+|+...... .
T Consensus 77 F~---~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~~i------p~IVviNKiD~~~a~~~~v~~ei~~l~~~ 146 (594)
T TIGR01394 77 FG---GEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALELGL------KPIVVINKIDRPSARPDEVVDEVFDLFAE 146 (594)
T ss_pred HH---HHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHCCC------CEEEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 11 12344567799999999998754 3445666666666553 88999999998643210 0
Q ss_pred -----C--CCCeEEEeccCcc----------cHHHHHHHHHHHHhhh
Q psy50 412 -----T--EEYDLLISATRGT----------GLAQLKEKVQDMILKA 441 (505)
Q Consensus 412 -----~--~~~~v~iSA~~g~----------gi~eL~~~I~~~l~~~ 441 (505)
. ..+++++||++|. |++.|++.|.+.++..
T Consensus 147 ~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 147 LGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred hccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 0 2478999999996 7999999999998753
No 240
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.28 E-value=4.9e-11 Score=114.80 Aligned_cols=118 Identities=26% Similarity=0.236 Sum_probs=71.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc---CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML---PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~---~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
+.|+++|++|||||||+++|++..... ....++ ........ ..+..+.++||||... +. ......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~-----~~---~~~~~~ 68 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIE--PNVATFILNSEGKGKKFRLVDVPGHPK-----LR---DKLLET 68 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEe--ecceEEEeecCCCCceEEEEECCCCHH-----HH---HHHHHH
Confidence 578999999999999999999875221 111111 11111111 2356789999999431 11 122445
Q ss_pred HHhh-ceeEEEeeCCCCC-hHH-HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 354 AMLA-DIIIHVVDVSNPD-YLQ-QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 354 i~~A-DliL~VvD~s~~~-~~~-~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
+..+ +.+++|+|+++.. ... ..+.+..++...... ....|+++|+||+|+...
T Consensus 69 ~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~-~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 69 LKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKV-KNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhc-cCCCCEEEEecchhhccc
Confidence 6677 9999999998762 222 122333444332110 123599999999998754
No 241
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.28 E-value=3.5e-11 Score=116.37 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcc--c------ee----------eeeeeeeeecccc----CCcceEEEEeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR--N------QL----------FATLDVTTHEGML----PNRLRILYVDTIGF 335 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~--d------~~----------ftTld~t~~~~~~----~~~~~v~l~DT~Gf 335 (505)
.|+++|++|+|||||+++|+........ + .. ..|.........+ .....+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875322110 0 00 0111111100101 12467899999995
Q ss_pred eecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 336 i~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
.. +. ..+...+..+|++++|+|+++..... ...+...+...+ .|+++|+||+|++
T Consensus 82 ~~-----f~---~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~~------~p~iiviNK~D~~ 136 (213)
T cd04167 82 VN-----FM---DEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILEG------LPIVLVINKIDRL 136 (213)
T ss_pred cc-----hH---HHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEECcccC
Confidence 32 11 23456677899999999998776443 233333333222 4999999999986
No 242
>KOG0075|consensus
Probab=99.28 E-value=1.7e-11 Score=109.40 Aligned_cols=146 Identities=22% Similarity=0.291 Sum_probs=103.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH-HH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED-AM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~-i~ 355 (505)
-.+.++|--|+|||||.|.+.... ...++ ..|.....+.. ..+...+.+||.+|. ..|++.++. .+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~--~~edm-iptvGfnmrk~-tkgnvtiklwD~gGq---------~rfrsmWerycR 87 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQ--YLEDM-IPTVGFNMRKV-TKGNVTIKLWDLGGQ---------PRFRSMWERYCR 87 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeecc--chhhh-cccccceeEEe-ccCceEEEEEecCCC---------ccHHHHHHHHhh
Confidence 468999999999999999887643 12222 22222222222 246788999999993 235555554 57
Q ss_pred hhceeEEEeeCCCCChHH-HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEec
Q psy50 356 LADIIIHVVDVSNPDYLQ-QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISA 421 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~-~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA 421 (505)
..+++++++|+++|...+ ....+.++|.+-.+.. .|+++.+||+|+...-... ....+|.|||
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~g---ip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTG---IPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcC---CcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEE
Confidence 799999999999986543 3455666676654444 4999999999987654321 1345899999
Q ss_pred cCcccHHHHHHHHHHHH
Q psy50 422 TRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l 438 (505)
++..||+-++++|.+.-
T Consensus 165 ke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHS 181 (186)
T ss_pred cCCccHHHHHHHHHHHh
Confidence 99999999999998875
No 243
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.27 E-value=4.6e-11 Score=118.60 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCC-Ccchh-hhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT-LLEPF-KVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~-lie~f-~~tl 351 (505)
....+|+++|.+|||||||+|+|++.....+.+....|......... .++..+.++|||||....... ..+.. ....
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 45679999999999999999999998755555555556554433222 356789999999987531101 01111 1111
Q ss_pred HHH--HhhceeEEEeeCCCCChHHHHHHHHHHHHh-cCcccccCccEEEEEeCCCCCCCCC
Q psy50 352 EDA--MLADIIIHVVDVSNPDYLQQKQHVDETLQH-LELEEKILEHVLVVGNKVDAVPPGE 409 (505)
Q Consensus 352 e~i--~~ADliL~VvD~s~~~~~~~~~~v~~~L~~-lg~~~~~~~p~IlV~NKiDl~~~~~ 409 (505)
..+ ...|++++|..++..........+.+.+.+ +|. ....++++|+||+|...++.
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~--~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP--SIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh--hhHhCEEEEEeCCccCCCCC
Confidence 122 147888888766543322223344544444 442 22357999999999887665
No 244
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=4.2e-11 Score=117.16 Aligned_cols=130 Identities=21% Similarity=0.207 Sum_probs=86.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..|+++|.+|+|||||+|+|.+............+. +. ....+.++.++||||.+ ..+++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i--~i---~~~~~~~i~~vDtPg~~-----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI--TV---VTGKKRRLTFIECPNDI-----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE--EE---EecCCceEEEEeCCchH-----------HHHHH
Confidence 3556789999999999999999998763111111111111 11 12356788999999843 23455
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCC----------------CCCCC
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGER----------------VTEEY 415 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~----------------~~~~~ 415 (505)
.+..+|++++|+|++.+... +...+...+...+. | +++|+||+|+...... ..+.+
T Consensus 100 ~ak~aDvVllviDa~~~~~~-~~~~i~~~l~~~g~------p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~k 172 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEM-ETFEFLNILQVHGF------PRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAK 172 (225)
T ss_pred HHHhcCEEEEEEecCcCCCH-HHHHHHHHHHHcCC------CeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 56789999999999876543 34456666766553 5 4569999999743321 12568
Q ss_pred eEEEeccCcc
Q psy50 416 DLLISATRGT 425 (505)
Q Consensus 416 ~v~iSA~~g~ 425 (505)
++++||+++-
T Consensus 173 i~~iSa~~~~ 182 (225)
T cd01882 173 LFYLSGIVHG 182 (225)
T ss_pred EEEEeeccCC
Confidence 9999999873
No 245
>KOG0081|consensus
Probab=99.26 E-value=6.4e-12 Score=113.38 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=106.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc----C------CcceEEEEeeeeeeecCCCCCcchhh
Q psy50 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML----P------NRLRILYVDTIGFISNIPTTLLEPFK 348 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~----~------~~~~v~l~DT~Gfi~~lp~~lie~f~ 348 (505)
...+|.+|+||||++-..+... ..+.-+...++|...+.+.. + ..+.+++|||+| .|.|+
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~-F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG---------QERFR 81 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGK-FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG---------QERFR 81 (219)
T ss_pred HHhhccCCCCceEEEEEecCCc-ccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc---------HHHHH
Confidence 4567999999999999888764 22222222223322222111 1 135789999999 34554
Q ss_pred h-hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeE
Q psy50 349 V-TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDL 417 (505)
Q Consensus 349 ~-tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v 417 (505)
+ |-.-++.|-..++++|.++..+......|+..|+-....+ +..+++++||+||........ ..|+|
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYf 159 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYF 159 (219)
T ss_pred HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCee
Confidence 4 4455778889999999998877665555555554332211 235899999999977654321 67999
Q ss_pred EEeccCcccHHHHHHHHHHHHhhhcCcceEEEEec
Q psy50 418 LISATRGTGLAQLKEKVQDMILKATGRKNITMRVR 452 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p 452 (505)
++||-+|.|+++-.+.+...+.+.+.....+-.+|
T Consensus 160 ETSA~tg~Nv~kave~LldlvM~Rie~~v~~s~~p 194 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLDLVMKRIEQCVEKSEIP 194 (219)
T ss_pred eeccccCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999988888888776544333333444
No 246
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.6e-11 Score=125.75 Aligned_cols=89 Identities=28% Similarity=0.376 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-----------------cceEEEEeeeeeeec
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-----------------RLRILYVDTIGFISN 338 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-----------------~~~v~l~DT~Gfi~~ 338 (505)
..+++|||-||+|||||+|+||... +...+++|+|+++....+..++ ..++.|+|.+|++..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3579999999999999999999998 7789999999999876544432 246789999999875
Q ss_pred CC--CCCcchhhhhHHHHHhhceeEEEeeCCC
Q psy50 339 IP--TTLLEPFKVTLEDAMLADIIIHVVDVSN 368 (505)
Q Consensus 339 lp--~~lie~f~~tle~i~~ADliL~VvD~s~ 368 (505)
-. ..|-.. .|.+++++|.|+||+|++.
T Consensus 81 As~GeGLGNk---FL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 ASKGEGLGNK---FLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cccCCCcchH---HHHhhhhcCeEEEEEEecC
Confidence 33 234444 5889999999999999984
No 247
>KOG0088|consensus
Probab=99.22 E-value=1.4e-11 Score=111.07 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=106.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee--ecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT--HEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~--~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
-.++|+++|..-+|||||.-+.+... . .++..+|+.... +.+.+ .....+.+|||+|.-. .|.+-.-
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~Enk-F--n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQEr--fHALGPI----- 81 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENK-F--NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQER--FHALGPI----- 81 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhh-c--chhhHHHHHHHHhhcccccccceeeeeeeeccchHh--hhccCce-----
Confidence 34689999999999999998888664 1 233333332111 11111 2456788999999422 1222221
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA 421 (505)
+++.++..++|+|+++.+++...+.|...|+.+--.. .-+++|+||+||....... ....++.+||
T Consensus 82 -YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne---i~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSA 157 (218)
T KOG0088|consen 82 -YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE---IELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSA 157 (218)
T ss_pred -EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe---eEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccc
Confidence 2457899999999999998887787777777653222 3689999999986654321 1456899999
Q ss_pred cCcccHHHHHHHHHHHHhhh
Q psy50 422 TRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~~ 441 (505)
+++.||.+||+.+...+.+.
T Consensus 158 k~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 158 KDNVGISELFESLTAKMIEH 177 (218)
T ss_pred ccccCHHHHHHHHHHHHHHH
Confidence 99999999999998877653
No 248
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.21 E-value=2.1e-10 Score=119.12 Aligned_cols=219 Identities=17% Similarity=0.222 Sum_probs=133.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC----CCC-----------Cccceee---eeeeeee---eccccCC----cceEEE
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD----DSL-----------VPRNQLF---ATLDVTT---HEGMLPN----RLRILY 329 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~----~~~-----------~~~d~~f---tTld~t~---~~~~~~~----~~~v~l 329 (505)
+-..|+++|+.|+|||||+|++++. +.. .+.+... +|.++.. ....+.- ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5567999999999999999999998 433 3444445 5555544 2222222 378999
Q ss_pred EeeeeeeecCCCCCc--ch--------------hh-----hhHHHHH-hhceeEEEe-eCC-----CCChHHHHHHHHHH
Q psy50 330 VDTIGFISNIPTTLL--EP--------------FK-----VTLEDAM-LADIIIHVV-DVS-----NPDYLQQKQHVDET 381 (505)
Q Consensus 330 ~DT~Gfi~~lp~~li--e~--------------f~-----~tle~i~-~ADliL~Vv-D~s-----~~~~~~~~~~v~~~ 381 (505)
+||+||.....-... +. |. -|.+.+. ++|+.++|. |.| .....+..+.+.+.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999999753211111 11 11 1666677 899999998 775 12234456677888
Q ss_pred HHhcCcccccCccEEEEEeCCCCCCCCCC--C-----C-CCCeEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecC
Q psy50 382 LQHLELEEKILEHVLVVGNKVDAVPPGER--V-----T-EEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRS 453 (505)
Q Consensus 382 L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--~-----~-~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~ 453 (505)
|++.+ +|+++|+||+|-...... . . ..+++++|+..- .-+++...+.+.|.+. ....+.+.+|.
T Consensus 176 Lk~~~------kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~EF-Pv~Ei~~~~P~ 247 (492)
T TIGR02836 176 LKELN------KPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLYEF-PILEINIDLPS 247 (492)
T ss_pred HHhcC------CCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHhcC-CceEEEeeCch
Confidence 88776 499999999994322211 0 0 347788888753 3566666666666654 34455666663
Q ss_pred ---CCccccccc---------------------------------CCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHH
Q psy50 454 ---GGSEYQWLM---------------------------------KHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHE 497 (505)
Q Consensus 454 ---~~~~~~~l~---------------------------------~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~ 497 (505)
.-+.-.||. ....+... ...+|.. .+.+.+++..|.+.-.+
T Consensus 248 Wve~L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~~~~~~e~i~~~~l~~i--~lg~G~~-~i~~~~~~~lyy~iLsE 324 (492)
T TIGR02836 248 WVEVLDENHWLKENFQSSVKETVKDVYRLRDVDNVVGQLKENEFIESVGLAGI--EMGEGVA-EIDLYAKEGLFYKILKE 324 (492)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhccccccchhhhheeeeE--ecCCcEE-EEEEEcChhHHHHHHHH
Confidence 001111111 11112221 2234544 46888899999888888
Q ss_pred hcccccC
Q psy50 498 FISSRKR 504 (505)
Q Consensus 498 ~p~~~~~ 504 (505)
.....|.
T Consensus 325 ~~G~~I~ 331 (492)
T TIGR02836 325 VSGVEIR 331 (492)
T ss_pred HhCCCcC
Confidence 7766554
No 249
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=9.8e-11 Score=119.42 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc--------------CCcceEEEEeeeeeeecCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML--------------PNRLRILYVDTIGFISNIP 340 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~--------------~~~~~v~l~DT~Gfi~~lp 340 (505)
...+|+++|..|||||||++++++.... ....+..+.+.......+ .....+.+|||+|--.
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~-~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr--- 95 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSI-ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER--- 95 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcc-cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh---
Confidence 3468999999999999999999976421 111111111111111111 1245689999999321
Q ss_pred CCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCc---c------cccCccEEEEEeCCCCCCC
Q psy50 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLEL---E------EKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 341 ~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~---~------~~~~~p~IlV~NKiDl~~~ 407 (505)
...+. -..+..+|++|+|+|+++..+......|.+.+...+- + .....|+++|+||+||...
T Consensus 96 ---frsL~--~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 ---YKDCR--SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ---hhhhh--HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 11111 1236679999999999998887777777776665421 0 0123699999999999654
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.20 E-value=8.4e-11 Score=126.13 Aligned_cols=141 Identities=19% Similarity=0.194 Sum_probs=91.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc--------------c----------------ceeeeeeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP--------------R----------------NQLFATLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~--------------~----------------d~~ftTld~t~~~~~~~~~ 324 (505)
....|+++|+.++|||||+.+|+....... + -....|.++...... .++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence 445799999999999999999875211100 0 011223343332222 246
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCCh------HHHHHHHHHHHHhcCcccccCccEEEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDY------LQQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~------~~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..+.|+||||.. +++ ..+...+..+|.+++|+|++.+.. ..+......++..+|++ ++|++
T Consensus 85 ~~i~lIDtPGh~-----~f~---~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~-----~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGHR-----DFI---KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK-----QMIVC 151 (446)
T ss_pred eEEEEEECCChH-----HHH---HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC-----eEEEE
Confidence 789999999943 222 234455677999999999987642 23566667778888762 47899
Q ss_pred EeCCCCCCC--C-CCC------------------CCCCeEEEeccCcccHHH
Q psy50 399 GNKVDAVPP--G-ERV------------------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 399 ~NKiDl~~~--~-~~~------------------~~~~~v~iSA~~g~gi~e 429 (505)
+||+|.... + ... ...+++|+||.+|.|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 999995321 1 100 025789999999999964
No 251
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.19 E-value=3.6e-10 Score=115.27 Aligned_cols=174 Identities=20% Similarity=0.182 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCC---Cc----cc--eeee--
Q psy50 242 KRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSL---VP----RN--QLFA-- 310 (505)
Q Consensus 242 ~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~---~~----~d--~~ft-- 310 (505)
|++.+.+-|..+++.-.... ....+..........|+|+|+||+|||||++.|...... .+ .| .+++
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~ 79 (300)
T TIGR00750 2 NRRALARAITLVENRHPEAK--QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGG 79 (300)
T ss_pred CHHHHHHHHHHHhCCChHHH--HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchh
Confidence 45666666666654433311 112222233456789999999999999999998753100 00 00 0000
Q ss_pred -----e-------eee--eeec----c---------------ccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 311 -----T-------LDV--TTHE----G---------------MLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 311 -----T-------ld~--t~~~----~---------------~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
. .++ ..+. + ....+..++|+||+|... + ....+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~--~---------e~~i~~~a 148 (300)
T TIGR00750 80 SILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQ--S---------EVDIANMA 148 (300)
T ss_pred hhcccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCch--h---------hhHHHHhh
Confidence 0 000 0000 0 001367899999999542 1 12234568
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------------CC-----CCCeEE
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------------VT-----EEYDLL 418 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------------~~-----~~~~v~ 418 (505)
|.++++.+.... .........+. .+|.++|+||+|+...... .. ..++++
T Consensus 149 D~i~vv~~~~~~---~el~~~~~~l~--------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 217 (300)
T TIGR00750 149 DTFVVVTIPGTG---DDLQGIKAGLM--------EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLT 217 (300)
T ss_pred ceEEEEecCCcc---HHHHHHHHHHh--------hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEE
Confidence 898888543222 22222222221 2488999999999754310 01 136899
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+||+++.|+++|+++|.+.+.
T Consensus 218 iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 218 TSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEccCCCCHHHHHHHHHHHHH
Confidence 999999999999999998753
No 252
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.18 E-value=1.7e-10 Score=117.04 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
+..+|+++|.+|+||||++|+|+|.....++.....|..++.... ...+..+.++||||+.+.. ...+.....+..+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~-~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~~ 113 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR-TRAGFTLNIIDTPGLIEGG--YINDQAVNIIKRF 113 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE-EECCeEEEEEECCCCCchH--HHHHHHHHHHHHH
Confidence 567899999999999999999999875444444333333322222 1357899999999987521 1111111111111
Q ss_pred ---HhhceeEEEeeCCCCChHHHHHHHHHHHHh-cCcccccCccEEEEEeCCCCCCCCC
Q psy50 355 ---MLADIIIHVVDVSNPDYLQQKQHVDETLQH-LELEEKILEHVLVVGNKVDAVPPGE 409 (505)
Q Consensus 355 ---~~ADliL~VvD~s~~~~~~~~~~v~~~L~~-lg~~~~~~~p~IlV~NKiDl~~~~~ 409 (505)
...|++|+|..++.......+..+.+.+.. +| .....++|+|++++|..+++.
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG--~~iw~~~IVVfTh~d~~~pd~ 170 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG--KDIWRKSLVVLTHAQFSPPDG 170 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh--hhhhccEEEEEECCccCCCCC
Confidence 158999999654432222223344444443 34 223358999999999875543
No 253
>KOG0097|consensus
Probab=99.15 E-value=4.9e-10 Score=99.38 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=106.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC----CccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-h
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSL----VPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-T 350 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~----~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-t 350 (505)
..+..|+|.-|+|||.|+..++..... .+-...|.|.-+.+ .....++.+|||+| .+.|++ |
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev----sgqkiklqiwdtag---------qerfravt 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV----SGQKIKLQIWDTAG---------QERFRAVT 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe----cCcEEEEEEeeccc---------HHHHHHHH
Confidence 456789999999999999999876522 12223344432221 23467899999999 455654 5
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEe
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLIS 420 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iS 420 (505)
...++.|-..++|+|++...+..+...|+.-.+.+--++ ..++++.||.||....+.. ....++..|
T Consensus 78 rsyyrgaagalmvyditrrstynhlsswl~dar~ltnpn---t~i~lignkadle~qrdv~yeeak~faeengl~fle~s 154 (215)
T KOG0097|consen 78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEAS 154 (215)
T ss_pred HHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc---eEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEec
Confidence 677888999999999998887776666666555553332 3588999999997655431 144689999
Q ss_pred ccCcccHHHHHHHHHHHHhhh
Q psy50 421 ATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~~ 441 (505)
|++|.|+++-+-.-.+.+...
T Consensus 155 aktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 155 AKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccccCcHHHHHHHHHHHHHHh
Confidence 999999998776666655544
No 254
>PRK13768 GTPase; Provisional
Probab=99.11 E-value=3.6e-10 Score=112.56 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHh--hceeEEEeeCCCCChHHHHHH--HHHHHHhcCcccccCccEEEEEe
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAML--ADIIIHVVDVSNPDYLQQKQH--VDETLQHLELEEKILEHVLVVGN 400 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~--ADliL~VvD~s~~~~~~~~~~--v~~~L~~lg~~~~~~~p~IlV~N 400 (505)
..++++||||.++-.. .........+.+.. ++++++|+|+++......... +........ ..+|+++|+|
T Consensus 97 ~~~~~~d~~g~~~~~~--~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~----~~~~~i~v~n 170 (253)
T PRK13768 97 ADYVLVDTPGQMELFA--FRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR----LGLPQIPVLN 170 (253)
T ss_pred CCEEEEeCCcHHHHHh--hhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH----cCCCEEEEEE
Confidence 3689999999765221 11112222333333 899999999976543322211 111111111 2359999999
Q ss_pred CCCCCCCCCCC--------------------------------------CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 401 KVDAVPPGERV--------------------------------------TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 401 KiDl~~~~~~~--------------------------------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+....+.. ...+++++||++++|+++|+++|.+.+.
T Consensus 171 K~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 171 KADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 99998654320 0136899999999999999999999873
No 255
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.11 E-value=5.7e-10 Score=103.02 Aligned_cols=68 Identities=25% Similarity=0.220 Sum_probs=45.6
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
..+.|+||||+-.... ... ..+.+.+..+|++++|+++++.........+.+.+.... ..+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~--~~~--~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~------~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNS--EHT--EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK------SRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHT--TTS--HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC------SSEEEEEE-G
T ss_pred cceEEEeCCccccchh--hhH--HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC------CeEEEEEcCC
Confidence 4578999999865211 111 345667789999999999998766554555555554332 3599999995
No 256
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.11 E-value=5.8e-10 Score=121.78 Aligned_cols=116 Identities=22% Similarity=0.145 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC--Cccce------eeeeee-----------eeeecc-ccCCcceEEEEeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQ------LFATLD-----------VTTHEG-MLPNRLRILYVDTIGF 335 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~------~ftTld-----------~t~~~~-~~~~~~~v~l~DT~Gf 335 (505)
...|+|+|++|||||||+++|+..... ..+.. ..++.| +..... ...++..+.++||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 458999999999999999999632111 01110 001011 000000 1124678999999995
Q ss_pred eecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 336 i~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
.. .. ..+...+..+|.+++|+|+++... .+.+.+.......+ .|+++++||+|+..
T Consensus 90 ~d-----f~---~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~~------iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 ED-----FS---EDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLRD------TPIFTFINKLDRDG 145 (526)
T ss_pred hh-----hH---HHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhcC------CCEEEEEECCcccc
Confidence 31 11 224556778999999999987653 34455555555443 49999999999854
No 257
>KOG0076|consensus
Probab=99.10 E-value=1.9e-10 Score=105.64 Aligned_cols=154 Identities=23% Similarity=0.253 Sum_probs=101.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhh
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDS----LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVT 350 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~----~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~t 350 (505)
....|.|+|.-|||||||+-++-.... ...-+...+|....+....+. +..+.|||.-|. +..++-
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-~~~l~fwdlgGQ---------e~lrSl 85 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-NAPLSFWDLGGQ---------ESLRSL 85 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-cceeEEEEcCCh---------HHHHHH
Confidence 445789999999999999988743321 111233344444444333333 778999999882 222222
Q ss_pred H-HHHHhhceeEEEeeCCCCChHHHHHH-HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------------CCC
Q psy50 351 L-EDAMLADIIIHVVDVSNPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------------TEE 414 (505)
Q Consensus 351 l-e~i~~ADliL~VvD~s~~~~~~~~~~-v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------------~~~ 414 (505)
+ ..+..|+.+++|+|++++...+.... ..+++..-.+.. .|+++.+||-|+.+..+.. ...
T Consensus 86 w~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg---~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 86 WKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEG---APVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcC---CchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccC
Confidence 2 23556999999999998765443322 222232222222 4999999999987654321 145
Q ss_pred CeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
++.||||++|+|+++-.+++...+.+.
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhhc
Confidence 789999999999999999999998654
No 258
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.10 E-value=4.2e-10 Score=127.05 Aligned_cols=134 Identities=17% Similarity=0.121 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC-----ccc------------eeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLV-----PRN------------QLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-----~~d------------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
+...|+|+|++|+|||||+|+|+...... ..+ ....|++....... .++.++.++||||+..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCCcc
Confidence 34589999999999999999997432111 111 11223332222222 2467899999999743
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------- 410 (505)
.. ..+...+..+|++++|+|++++... +...+...+...+ .|+++|+||+|+...+..
T Consensus 88 -----~~---~~~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~------~p~ivviNK~D~~~~~~~~~~~~i~ 152 (689)
T TIGR00484 88 -----FT---VEVERSLRVLDGAVAVLDAVGGVQP-QSETVWRQANRYE------VPRIAFVNKMDKTGANFLRVVNQIK 152 (689)
T ss_pred -----hh---HHHHHHHHHhCEEEEEEeCCCCCCh-hHHHHHHHHHHcC------CCEEEEEECCCCCCCCHHHHHHHHH
Confidence 11 1234556779999999999886543 3445555565554 489999999998764310
Q ss_pred --CC---CCCeEEEeccCc
Q psy50 411 --VT---EEYDLLISATRG 424 (505)
Q Consensus 411 --~~---~~~~v~iSA~~g 424 (505)
.. ....+|+||.++
T Consensus 153 ~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 153 QRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHhCCCceeEEeccccCCC
Confidence 01 223678887766
No 259
>PTZ00099 rab6; Provisional
Probab=99.09 E-value=4e-10 Score=106.11 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=75.4
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
...++.+|||+|... ...+. -..++.||++++|+|++++.+.+....+...+..... ...|+++|+||+
T Consensus 27 ~~v~l~iwDt~G~e~--~~~~~------~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~---~~~piilVgNK~ 95 (176)
T PTZ00099 27 GPVRLQLWDTAGQER--FRSLI------PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG---KDVIIALVGNKT 95 (176)
T ss_pred EEEEEEEEECCChHH--hhhcc------HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECc
Confidence 357889999999532 11111 2336789999999999998776655555544433221 235899999999
Q ss_pred CCCCCCCCCC----------CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 403 DAVPPGERVT----------EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 403 Dl~~~~~~~~----------~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
|+........ ...++++||++|.|+++++++|.+.+++
T Consensus 96 DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9864322110 3457899999999999999999998864
No 260
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.07 E-value=1.2e-09 Score=107.64 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee-------------------------------------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT------------------------------------- 316 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~------------------------------------- 316 (505)
-..|.+++||++||||||++++|+|......+ .-..|..++.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~-~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccC-CCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987411000 0000000000
Q ss_pred --------------eccccCCcceEEEEeeeeeeecC----CCCCcchhhh-hHHHHH-hhceeEEEeeCCCCChHHHHH
Q psy50 317 --------------HEGMLPNRLRILYVDTIGFISNI----PTTLLEPFKV-TLEDAM-LADIIIHVVDVSNPDYLQQKQ 376 (505)
Q Consensus 317 --------------~~~~~~~~~~v~l~DT~Gfi~~l----p~~lie~f~~-tle~i~-~ADliL~VvD~s~~~~~~~~~ 376 (505)
-.+..|+...+.++||||+.... +..+...+.. +..++. ..+++++|+|+..........
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 00001223678999999997421 1112222322 445566 356999999987543333223
Q ss_pred HHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 377 HVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 377 ~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.+.+.+...+ +|+++|+||+|....
T Consensus 183 ~ia~~ld~~~------~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 KLAKEVDPQG------ERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHcC------CcEEEEEECCCCCCc
Confidence 4445554433 489999999998653
No 261
>KOG0070|consensus
Probab=99.07 E-value=3.3e-10 Score=105.29 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH-HH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL-ED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl-e~ 353 (505)
...+|.++|--||||||++..|-..+..++-+ |+...+..+.. .+..+.+||.-|.. .++..+ .+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~y-kn~~f~vWDvGGq~---------k~R~lW~~Y 81 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEY-KNISFTVWDVGGQE---------KLRPLWKHY 81 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEE-cceEEEEEecCCCc---------ccccchhhh
Confidence 34579999999999999999987666444422 22222222222 47899999999942 111112 23
Q ss_pred HHhhceeEEEeeCCCCChHH-HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQ-QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~-~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~i 419 (505)
+...+.+++|+|.++..... ..+.+..++..-.+ ...|+++..||.|+....... ....+-.+
T Consensus 82 ~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l---~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~ 158 (181)
T KOG0070|consen 82 FQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPEL---RNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQST 158 (181)
T ss_pred ccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCccc---CCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeec
Confidence 56799999999999876532 33445555554432 345999999999987654321 13357889
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
+|.+|+|+.+-+++|.+.+.
T Consensus 159 ~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred cccccccHHHHHHHHHHHHh
Confidence 99999999999999998874
No 262
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.07 E-value=2.4e-09 Score=99.55 Aligned_cols=148 Identities=22% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc-----cc----eeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP-----RN----QLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLE 345 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~-----~d----~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie 345 (505)
...+|+++|+-++||||++.+++....+.+ .. ...+|.-.........++..+.++||||..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~--------- 79 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE--------- 79 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH---------
Confidence 457899999999999999999998753211 11 112444444444445566889999999932
Q ss_pred hhhhhHHH-HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------C-CCC
Q psy50 346 PFKVTLED-AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------V-TEE 414 (505)
Q Consensus 346 ~f~~tle~-i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~-~~~ 414 (505)
.|+-.++. .+.++.+++++|.+.+... ....+.+.+..... .|++++.||.|+...... . ...
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-----ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-----IPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-----CCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 33322333 3568999999999998876 34555666655432 499999999999876432 1 146
Q ss_pred CeEEEeccCcccHHHHHHHHHHH
Q psy50 415 YDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
++++++|.+++|..+.++.+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 89999999999999888887665
No 263
>PRK00007 elongation factor G; Reviewed
Probab=99.07 E-value=5.5e-10 Score=126.15 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhC---CCCCC--cc------------ceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTD---DDSLV--PR------------NQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g---~~~~~--~~------------d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
+...|+|+|++|+|||||+|+|+. ..... +. .....|++....... ..+.++.++||||+..
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCcHH
Confidence 345899999999999999999963 21000 01 111233333222222 2467899999999643
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------- 410 (505)
. ...+...+..+|++++|+|+..... .+...+...+...+. |+++++||+|+...+..
T Consensus 88 -----f---~~ev~~al~~~D~~vlVvda~~g~~-~qt~~~~~~~~~~~~------p~iv~vNK~D~~~~~~~~~~~~i~ 152 (693)
T PRK00007 88 -----F---TIEVERSLRVLDGAVAVFDAVGGVE-PQSETVWRQADKYKV------PRIAFVNKMDRTGADFYRVVEQIK 152 (693)
T ss_pred -----H---HHHHHHHHHHcCEEEEEEECCCCcc-hhhHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHH
Confidence 1 1224556677999999999987653 345666677776653 88999999998864421
Q ss_pred --CC---CCCeEEEeccCc
Q psy50 411 --VT---EEYDLLISATRG 424 (505)
Q Consensus 411 --~~---~~~~v~iSA~~g 424 (505)
.. ....+|+||.++
T Consensus 153 ~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 153 DRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHhCCCeeeEEecCccCCc
Confidence 00 234678888776
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.06 E-value=7.9e-10 Score=118.66 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc------------------------cc------eeeeeeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP------------------------RN------QLFATLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~------------------------~d------~~ftTld~t~~~~~~~~~ 324 (505)
....|+++|+.++|||||+-+|+....... -| .-..|+++...... ..+
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TTK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CCC
Confidence 446799999999999999988863211000 00 01123333222221 246
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChH------HHHHHHHHHHHhcCcccccCccEEEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL------QQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~------~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..+.++||||.. +++ ..+...+..+|..++|+|+.+...+ .+......++..+|++ ++|++
T Consensus 85 ~~i~liDtPGh~-----df~---~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~-----~iIV~ 151 (447)
T PLN00043 85 YYCTVIDAPGHR-----DFI---KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK-----QMICC 151 (447)
T ss_pred EEEEEEECCCHH-----HHH---HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC-----cEEEE
Confidence 688999999942 111 2344556789999999999875321 3455556667777752 57899
Q ss_pred EeCCCCCCCCC---CC------------------CCCCeEEEeccCcccHHH
Q psy50 399 GNKVDAVPPGE---RV------------------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 399 ~NKiDl~~~~~---~~------------------~~~~~v~iSA~~g~gi~e 429 (505)
+||+|+..... .. ...+++|+||++|+|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99999862110 00 024689999999999853
No 265
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.04 E-value=1.8e-09 Score=105.47 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCcccee---------------eeeeeeeeecccc---------CCcceEEEEeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQL---------------FATLDVTTHEGML---------PNRLRILYVDTI 333 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~---------------ftTld~t~~~~~~---------~~~~~v~l~DT~ 333 (505)
.|+++|+.++|||||+.+|+........... ..|+..+.....+ ..+..+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999999754321111100 0111111000111 125678999999
Q ss_pred eeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 334 GFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 334 Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
|... .. ..+...+..+|.+++|+|++++.... .+.+...+...+ .|+++|+||+|+...
T Consensus 82 G~~~-----f~---~~~~~~l~~aD~~ilVvD~~~g~~~~-t~~~l~~~~~~~------~p~ilviNKiD~~~~ 140 (222)
T cd01885 82 GHVD-----FS---SEVTAALRLCDGALVVVDAVEGVCVQ-TETVLRQALKER------VKPVLVINKIDRLIL 140 (222)
T ss_pred Cccc-----cH---HHHHHHHHhcCeeEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEECCCcchh
Confidence 9542 11 23455677899999999999876443 333444443333 389999999998643
No 266
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.04 E-value=3.6e-10 Score=98.62 Aligned_cols=134 Identities=24% Similarity=0.275 Sum_probs=88.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
.++++||..|||||||++.|-|.+....+.+.. .+.+ -..+||||-....| .+. ++-+--..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv----------e~~d---~~~IDTPGEy~~~~-~~Y---~aL~tt~~d 64 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV----------EFND---KGDIDTPGEYFEHP-RWY---HALITTLQD 64 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccccee----------eccC---ccccCCchhhhhhh-HHH---HHHHHHhhc
Confidence 478999999999999999999987432222211 1111 12579999543322 122 222233456
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCcccH
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTGL 427 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~gi 427 (505)
+|++++|..+.++.+.- - -|+.....+|+|-|++|+|+..+.... -..++|.+|+.++.|+
T Consensus 65 advi~~v~~and~~s~f-----~-----p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 65 ADVIIYVHAANDPESRF-----P-----PGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred cceeeeeecccCccccC-----C-----cccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 99999999988875321 0 112233346899999999998643321 1468999999999999
Q ss_pred HHHHHHHHHH
Q psy50 428 AQLKEKVQDM 437 (505)
Q Consensus 428 ~eL~~~I~~~ 437 (505)
++|++.|...
T Consensus 135 ~~l~~~L~~~ 144 (148)
T COG4917 135 EELVDYLASL 144 (148)
T ss_pred HHHHHHHHhh
Confidence 9999998653
No 267
>KOG1491|consensus
Probab=99.04 E-value=4.6e-10 Score=113.00 Aligned_cols=91 Identities=25% Similarity=0.321 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC----------------cceEEEEeeeeeeec
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN----------------RLRILYVDTIGFISN 338 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~----------------~~~v~l~DT~Gfi~~ 338 (505)
...+++|||-||+|||||+|+|+.... .+++++|+|+|+....+..++ ...+.+.|.+|++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 456999999999999999999999874 499999999999876544432 246889999999874
Q ss_pred CC--CCCcchhhhhHHHHHhhceeEEEeeCCCC
Q psy50 339 IP--TTLLEPFKVTLEDAMLADIIIHVVDVSNP 369 (505)
Q Consensus 339 lp--~~lie~f~~tle~i~~ADliL~VvD~s~~ 369 (505)
.. +.|-.. .+.+++++|.|+||++++..
T Consensus 98 As~G~GLGN~---FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 98 ASAGEGLGNK---FLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred cccCcCchHH---HHHhhhhccceeEEEEecCc
Confidence 32 344444 48889999999999998753
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.03 E-value=9.9e-10 Score=103.57 Aligned_cols=120 Identities=24% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCC-ccceeeeeeeeeeec-cccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLV-PRNQLFATLDVTTHE-GMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~-~~d~~ftTld~t~~~-~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
.+.|.|+|++|+|||+|+..|+...... ...+ .+.... .....+..+.++|+||.- .+...+...+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH~-----rlr~~~~~~~~~ 72 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGHP-----RLRSKLLDELKY 72 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT-H-----CCCHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCcH-----HHHHHHHHhhhc
Confidence 4689999999999999999999874221 1111 111111 112356789999999942 233333323334
Q ss_pred HHhhceeEEEeeCCCCC--hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 354 AMLADIIIHVVDVSNPD--YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~--~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
...+..|+||+|++... ..+..+.+.++|...... ....|++++.||.|+..
T Consensus 73 ~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFT 126 (181)
T ss_dssp HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT
T ss_pred hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccc
Confidence 77799999999987421 122234555565544321 12359999999999854
No 269
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.03 E-value=1.9e-09 Score=108.54 Aligned_cols=50 Identities=22% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 250 i~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
|.-.+.-|++..+..+..|.....++...|.|+|.||||||||++.+.+.
T Consensus 78 i~~~~~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 78 LEVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344555555666666677777788999999999999999999988865
No 270
>PRK12739 elongation factor G; Reviewed
Probab=99.02 E-value=1.4e-09 Score=122.88 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC--C---ccc------------eeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL--V---PRN------------QLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~---~~d------------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
....|+|+|++|+|||||+|+|+..... . +.+ ....|++....... .++.++.|+||||+..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHHH
Confidence 3457999999999999999999743110 0 010 11223332222222 2577899999999643
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
. ...+...+..+|++++|+|++++.. .+.+.+...+...+ .|+|+++||+|+...
T Consensus 86 -----f---~~e~~~al~~~D~~ilVvDa~~g~~-~qt~~i~~~~~~~~------~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 -----F---TIEVERSLRVLDGAVAVFDAVSGVE-PQSETVWRQADKYG------VPRIVFVNKMDRIGA 140 (691)
T ss_pred -----H---HHHHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHHcC------CCEEEEEECCCCCCC
Confidence 1 1235566778999999999987753 34556666666555 389999999999754
No 271
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.02 E-value=2.5e-09 Score=107.89 Aligned_cols=125 Identities=19% Similarity=0.287 Sum_probs=70.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccce-------eeeeeeeeeecccc-CCc--ceEEEEeeeeeeecCCCC-Cc-
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ-------LFATLDVTTHEGML-PNR--LRILYVDTIGFISNIPTT-LL- 344 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~-------~ftTld~t~~~~~~-~~~--~~v~l~DT~Gfi~~lp~~-li- 344 (505)
.+|+++|.+|+|||||+|+|++......... ...|.........+ .++ ..+.++|||||-...... ..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 4799999999999999999998864322110 11222221111111 122 579999999986532110 00
Q ss_pred -------chhhhhHHH---H-H-------hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 345 -------EPFKVTLED---A-M-------LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 345 -------e~f~~tle~---i-~-------~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
+.|...+.+ + + .+|+++++++.+..........+++.+.. ..|+++|+||+|++.
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-------~v~vi~VinK~D~l~ 157 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-------RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-------cCCEEEEEECCCcCC
Confidence 011111111 1 1 37889999998753222222333344432 149999999999976
Q ss_pred CC
Q psy50 407 PG 408 (505)
Q Consensus 407 ~~ 408 (505)
..
T Consensus 158 ~~ 159 (276)
T cd01850 158 PE 159 (276)
T ss_pred HH
Confidence 43
No 272
>PRK13351 elongation factor G; Reviewed
Probab=99.01 E-value=2.4e-09 Score=120.97 Aligned_cols=117 Identities=19% Similarity=0.134 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC-------ccce----------eeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLV-------PRNQ----------LFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-------~~d~----------~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
....|+|+|+.|+|||||+++|+...... .+.. ...|+........ ..+..+.++||||...
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHH
Confidence 34589999999999999999997532110 0000 0111111111111 2467899999999532
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.. ..+...+..+|++++|+|++++.... ...+...+...+ .|+++|+||+|+...
T Consensus 86 -----f~---~~~~~~l~~aD~~ilVvd~~~~~~~~-~~~~~~~~~~~~------~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 -----FT---GEVERSLRVLDGAVVVFDAVTGVQPQ-TETVWRQADRYG------IPRLIFINKMDRVGA 140 (687)
T ss_pred -----HH---HHHHHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHhcC------CCEEEEEECCCCCCC
Confidence 11 22345567799999999998876543 334444454443 489999999998753
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.00 E-value=3.7e-09 Score=102.50 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccc-eeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHH---
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRN-QLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLE--- 352 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d-~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle--- 352 (505)
+|.|+|.+|+||||+.|.|+|......+. ....|........ ..++..+.++|||||.... ...+.. ....+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~--~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSD--GSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETT--EEHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCc--ccHHHHHHHHHHHHH
Confidence 58999999999999999999987443321 1122333333333 2357899999999986521 111111 11111
Q ss_pred -HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------------CCC
Q psy50 353 -DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------------TEE 414 (505)
Q Consensus 353 -~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------------~~~ 414 (505)
.....+++|+|+... ..+......+..+.+.+|- ...+.+++|++..|........ -..
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~--~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGE--EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCG--GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccH--HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 123478999999988 4444434444444444552 2335799999999877665410 033
Q ss_pred CeEEEecc------CcccHHHHHHHHHHHHhhh
Q psy50 415 YDLLISAT------RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 415 ~~v~iSA~------~g~gi~eL~~~I~~~l~~~ 441 (505)
.++.++.. +...+.+|++.|.+++.+.
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 45555555 3456888999998888764
No 274
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.99 E-value=1.6e-09 Score=112.57 Aligned_cols=89 Identities=26% Similarity=0.259 Sum_probs=70.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCc----------------ceEEEEeeeeeeecCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR----------------LRILYVDTIGFISNIP 340 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~----------------~~v~l~DT~Gfi~~lp 340 (505)
.+++|||.||+|||||+|+|++.....+.+++|+|.++....+..++. ..+.++|.||++....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 578999999999999999999997426889999999988766555542 3689999999987533
Q ss_pred C--CCcchhhhhHHHHHhhceeEEEeeCCC
Q psy50 341 T--TLLEPFKVTLEDAMLADIIIHVVDVSN 368 (505)
Q Consensus 341 ~--~lie~f~~tle~i~~ADliL~VvD~s~ 368 (505)
. .+. ...+..++.+|+++||+|+.+
T Consensus 83 ~g~Glg---n~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLG---NQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcc---hHHHHHHHhCCEEEEEEeCCC
Confidence 2 233 335788899999999999863
No 275
>KOG1532|consensus
Probab=98.99 E-value=2.9e-09 Score=104.44 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc----------------------C---------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML----------------------P--------- 322 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~----------------------~--------- 322 (505)
+..+.|.++|..|+||||++.+|..-............+|+.++.... |
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 345678899999999999999997532111111112222322211111 0
Q ss_pred -----------------CcceEEEEeeeeeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCCC---hH-HHHHHHHH
Q psy50 323 -----------------NRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPD---YL-QQKQHVDE 380 (505)
Q Consensus 323 -----------------~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~---~~-~~~~~v~~ 380 (505)
...+..++||||.|+-.....-.++ ..++.. ...-++++|+|..... +. ...-....
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 1245789999998763221111111 111211 1346789999975432 21 12223334
Q ss_pred HHHhcCcccccCccEEEEEeCCCCCCCCCCC------------------------------------CCCCeEEEeccCc
Q psy50 381 TLQHLELEEKILEHVLVVGNKVDAVPPGERV------------------------------------TEEYDLLISATRG 424 (505)
Q Consensus 381 ~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------------------------------~~~~~v~iSA~~g 424 (505)
+|-+..+ |.|+|+||+|+....-.. .....+-+||.+|
T Consensus 176 ilyktkl------p~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 176 ILYKTKL------PFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHhccC------CeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 5544443 999999999997653110 0456899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++++.++.+.+.+
T Consensus 250 ~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDE 265 (366)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999876653
No 276
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.97 E-value=6.9e-09 Score=113.44 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC--Cccce------eeeeee-------------eeeeccccCCcceEEEEeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQ------LFATLD-------------VTTHEGMLPNRLRILYVDTI 333 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~------~ftTld-------------~t~~~~~~~~~~~v~l~DT~ 333 (505)
+...|+|+|++|+|||||+++|+..... ..+.. ..++.| ...... ..++..+.++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEEEEECC
Confidence 3458999999999999999998532111 01100 011111 111111 1246789999999
Q ss_pred eeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 334 GFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 334 Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
|+. ++. ..+...+..+|.+++|+|+++... .+.+.+.+.++..+ .|+++++||+|+.
T Consensus 89 G~~-----df~---~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~~------~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHE-----DFS---EDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRLRD------TPIFTFMNKLDRD 145 (527)
T ss_pred Chh-----hHH---HHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHhcC------CCEEEEEECcccc
Confidence 952 111 235566778999999999987643 33455555555433 4999999999974
No 277
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6.1e-10 Score=111.30 Aligned_cols=153 Identities=25% Similarity=0.285 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee-------eeeeeccc-------------cC-C------cceE
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL-------DVTTHEGM-------------LP-N------RLRI 327 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl-------d~t~~~~~-------------~~-~------~~~v 327 (505)
....|++||+-..|||||..+|+|......++-+-.+. |...+.+. .+ + -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45679999999999999999999863111110000000 00000000 00 1 1356
Q ss_pred EEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 328 LYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 328 ~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.|+|.||. .-|. ...+....-.|..++|++++.|+...|....+-.|+-+|+. .+|+|-||+|++..
T Consensus 89 SfVDaPGH-----e~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik-----~iiIvQNKIDlV~~ 155 (415)
T COG5257 89 SFVDAPGH-----ETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIK-----NIIIVQNKIDLVSR 155 (415)
T ss_pred EEeeCCch-----HHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccc-----eEEEEecccceecH
Confidence 78888882 1122 22345566689999999999998888888888888888873 68999999999876
Q ss_pred CCCC---------------CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 408 GERV---------------TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 408 ~~~~---------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+... ...|++|+||..+.||+.|+++|.++++.
T Consensus 156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 5321 15689999999999999999999999874
No 278
>KOG0462|consensus
Probab=98.96 E-value=2.4e-09 Score=113.37 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=96.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCC----ccceeeeeeee------ee----ecccc--CCcceEEEEeeeeeeecC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLV----PRNQLFATLDV------TT----HEGML--PNRLRILYVDTIGFISNI 339 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~----~~d~~ftTld~------t~----~~~~~--~~~~~v~l~DT~Gfi~~l 339 (505)
...++||-+-..|||||..+|+...... ...+....+++ |+ ..+.. .....+.++||||..+
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD-- 137 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD-- 137 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc--
Confidence 3468888899999999999986542110 11111121211 11 11111 2236788999999664
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------- 410 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------- 410 (505)
.-....+++ ..+|.+|+|+|++++.... ....+...-+.++ .+|.|+||+|+...+..
T Consensus 138 ---Fs~EVsRsl---aac~G~lLvVDA~qGvqAQ-T~anf~lAfe~~L------~iIpVlNKIDlp~adpe~V~~q~~~l 204 (650)
T KOG0462|consen 138 ---FSGEVSRSL---AACDGALLVVDASQGVQAQ-TVANFYLAFEAGL------AIIPVLNKIDLPSADPERVENQLFEL 204 (650)
T ss_pred ---ccceehehh---hhcCceEEEEEcCcCchHH-HHHHHHHHHHcCC------eEEEeeeccCCCCCCHHHHHHHHHHH
Confidence 111222233 3499999999999876433 3222222333343 68999999999876542
Q ss_pred --CCCCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 411 --VTEEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 411 --~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
....+++.+||++|.|+++|+++|.+.++..
T Consensus 205 F~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 205 FDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred hcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 1145799999999999999999999998643
No 279
>KOG1144|consensus
Probab=98.94 E-value=3.2e-09 Score=115.25 Aligned_cols=153 Identities=21% Similarity=0.211 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc------eeeeeeeeeee----cccc-------CCcceEEEEeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN------QLFATLDVTTH----EGML-------PNRLRILYVDTIGF 335 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d------~~ftTld~t~~----~~~~-------~~~~~v~l~DT~Gf 335 (505)
.-..|+++|+|+-..|||-|+..|.+.+ +..+. +..+|.-+... .-.+ ..--.++++||||.
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tN-VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTN-VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccc-cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 3457999999999999999999999876 32332 22232211100 0000 01234789999993
Q ss_pred eecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---
Q psy50 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT--- 412 (505)
Q Consensus 336 i~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~--- 412 (505)
- .+..+++ .....||+.|+|+|+.++.... .-.-+++|+.-. .|+|+++||+|.+-.....+
T Consensus 551 E------sFtnlRs--rgsslC~~aIlvvdImhGlepq-tiESi~lLR~rk------tpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 551 E------SFTNLRS--RGSSLCDLAILVVDIMHGLEPQ-TIESINLLRMRK------TPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred h------hhhhhhh--ccccccceEEEEeehhccCCcc-hhHHHHHHHhcC------CCeEEeehhhhhhcccccCCCch
Confidence 2 1111121 1123599999999999875433 323345555432 49999999999865432100
Q ss_pred ---------------------------------------------CCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 413 ---------------------------------------------EEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 413 ---------------------------------------------~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+..++|+||.+|+||.+|+-+|.++....
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 34689999999999999999999876654
No 280
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=6.8e-09 Score=108.48 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=96.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCC-C---ccceeeeeeeeeeecccc--------------CCcceEEEEeeeeeeec
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSL-V---PRNQLFATLDVTTHEGML--------------PNRLRILYVDTIGFISN 338 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~-~---~~d~~ftTld~t~~~~~~--------------~~~~~v~l~DT~Gfi~~ 338 (505)
...+||-+-..|||||-.+|...... . -.++...+.|+...++.. .....+.++||||.+.-
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 35677788889999999998754211 1 122333333332211111 13467889999997641
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------- 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------- 410 (505)
. .+ ..+++. .|...++|+|++.+-.......+...+.. + .-+|-|+||+||...+..
T Consensus 90 s-YE----VSRSLA---ACEGalLvVDAsQGveAQTlAN~YlAle~-~------LeIiPViNKIDLP~Adpervk~eIe~ 154 (603)
T COG0481 90 S-YE----VSRSLA---ACEGALLVVDASQGVEAQTLANVYLALEN-N------LEIIPVLNKIDLPAADPERVKQEIED 154 (603)
T ss_pred E-EE----ehhhHh---hCCCcEEEEECccchHHHHHHHHHHHHHc-C------cEEEEeeecccCCCCCHHHHHHHHHH
Confidence 1 11 122333 48889999999988644433444333331 1 268999999999876542
Q ss_pred ---CCCCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 411 ---VTEEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 411 ---~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
.+....+.+|||+|.|++++++.|.+.++..
T Consensus 155 ~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 155 IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred HhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 1145689999999999999999999998643
No 281
>KOG3883|consensus
Probab=98.91 E-value=1.7e-08 Score=90.97 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=108.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC--cceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN--RLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~--~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
.+..+|.++|.-++|||++|..|.-.+.........+--|+....+..+. ..++.+.||.|+-.. +..+-.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~eLpr------ 79 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQELPR------ 79 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hhhhhH------
Confidence 35678999999999999999998754423222222222333332222232 347899999997542 222221
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA 421 (505)
..+.-+|..++|++..++.++...+.+.+.+.+.. +....|++++.||+|+..+.+... ....+.++|
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta 157 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTA 157 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEe
Confidence 23445999999999999888776666667776643 444579999999999976554321 346799999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
.+...+-+.+..+...+..
T Consensus 158 ~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 158 MDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred ccchhhhhHHHHHHHhccC
Confidence 9999999999999888754
No 282
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.91 E-value=9.5e-09 Score=99.11 Aligned_cols=147 Identities=21% Similarity=0.302 Sum_probs=84.5
Q ss_pred HhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCC--CC----ccceeeeeeeeeee-----------cc-----------
Q psy50 268 RNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDS--LV----PRNQLFATLDVTTH-----------EG----------- 319 (505)
Q Consensus 268 r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~--~~----~~d~~ftTld~t~~-----------~~----------- 319 (505)
|.....++.+.|+++|++|||||||++.+..... .. ..+. ..+.|.... .+
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~-~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~ 92 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV-ITKFDAERLRKYGAPAIQINTGKECHLDAHMVA 92 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC-CCcccHHHHHHcCCcEEEEcCCCcccCChHHHH
Confidence 4444556788999999999999999999976410 00 0010 001111000 00
Q ss_pred ---c-c-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc
Q psy50 320 ---M-L-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394 (505)
Q Consensus 320 ---~-~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p 394 (505)
. . ..+..+++++|.|-+.. |.. + . ...+..+.|+|+.+..... ......+ ..|
T Consensus 93 ~~l~~~~~~~~d~IiIEt~G~l~~-~~~----~----~--~~~~~~i~Vvd~~~~d~~~-----~~~~~~~------~~a 150 (207)
T TIGR00073 93 HALEDLPLDDIDLLFIENVGNLVC-PAD----F----D--LGEHMRVVLLSVTEGDDKP-----LKYPGMF------KEA 150 (207)
T ss_pred HHHHHhccCCCCEEEEecCCCcCC-Ccc----c----c--cccCeEEEEEecCcccchh-----hhhHhHH------hhC
Confidence 0 0 01346777888773211 111 0 0 1234455678876554221 1111111 237
Q ss_pred EEEEEeCCCCCCCCCC------------CCCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 395 VLVVGNKVDAVPPGER------------VTEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 395 ~IlV~NKiDl~~~~~~------------~~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
.++++||+|+...... ....+++++||++|.|++++++++.++
T Consensus 151 ~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 151 DLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999753210 114679999999999999999999775
No 283
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.89 E-value=2.1e-08 Score=116.20 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=82.7
Q ss_pred CCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-----------------CcceEEEEeeeeeeecCCCCCcchhhh
Q psy50 287 CGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-----------------NRLRILYVDTIGFISNIPTTLLEPFKV 349 (505)
Q Consensus 287 aGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-----------------~~~~v~l~DT~Gfi~~lp~~lie~f~~ 349 (505)
++|||||.+|.+.+.+ .+..-.-|..+....+..+ ....+.|+||||. +.|..
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh---------e~F~~ 541 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH---------EAFTS 541 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc---------HHHHH
Confidence 4599999999998743 2221122222111100000 1123899999993 22211
Q ss_pred -hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------------
Q psy50 350 -TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------------ 410 (505)
Q Consensus 350 -tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------------ 410 (505)
.......+|++++|+|++++.... .......+...+ .|+++|+||+|+......
T Consensus 542 lr~~g~~~aDivlLVVDa~~Gi~~q-T~e~I~~lk~~~------iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~ 614 (1049)
T PRK14845 542 LRKRGGSLADLAVLVVDINEGFKPQ-TIEAINILRQYK------TPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHAL 614 (1049)
T ss_pred HHHhhcccCCEEEEEEECcccCCHh-HHHHHHHHHHcC------CCEEEEEECCCCccccccccchhhhhhhhhhHHHHH
Confidence 122345699999999998754332 333445555443 499999999999642110
Q ss_pred ------------------------------CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 411 ------------------------------VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 411 ------------------------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
....+++|+||++|+|+++|+.+|....
T Consensus 615 ~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 615 TELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0034789999999999999999886544
No 284
>KOG4252|consensus
Probab=98.89 E-value=1.5e-09 Score=100.06 Aligned_cols=152 Identities=13% Similarity=0.089 Sum_probs=106.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..++.|+|..++||||++.+.+..- .+.......+.|...+.... .......+|||+|.- -.++ .|...+
T Consensus 20 aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqe------EfDa--ItkAyy 90 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE------EFDA--ITKAYY 90 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccch------hHHH--HHHHHh
Confidence 4689999999999999999999763 22223333344444444332 345677899999921 1222 245667
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
+.|...++|+.-++..+++....|.+-...- ....|.++|-||||++....... ....+-+|++..
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e----~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked 166 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKE----TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKED 166 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHH----hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhh
Confidence 8899999999998887777665555443321 12359999999999987654321 456789999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+..++.+|.+.+..
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999887654
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.88 E-value=1.2e-08 Score=111.63 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC-CCcchhhhhH-H
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT-TLLEPFKVTL-E 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~-~lie~f~~tl-e 352 (505)
-..+|+|+|.||+||||++|.|+|...+.+......|........ ..++..+.++|||||...... ...+.+...+ .
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-EECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 345799999999999999999999875555544333333322111 235778999999999753111 1111221112 2
Q ss_pred HHH--hhceeEEEeeCCCCChHHHHHHHHHHHHh-cCcccccCccEEEEEeCCCCCCC
Q psy50 353 DAM--LADIIIHVVDVSNPDYLQQKQHVDETLQH-LELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 353 ~i~--~ADliL~VvD~s~~~~~~~~~~v~~~L~~-lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.+. .+|++|+|..++..........+.+.+.+ +| ......+|+|++..|..++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG--~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG--PSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhC--HHhHcCEEEEEeCCccCCC
Confidence 222 37999999876533322122334444443 34 2233579999999999874
No 286
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=4.6e-09 Score=108.65 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC----------------Ccccee--------------eeeeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL----------------VPRNQL--------------FATLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~----------------~~~d~~--------------ftTld~t~~~~~~~~~ 324 (505)
....++++|++++|||||+-+|+-.... -.+... +-|.+........ +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 4567899999999999999998632100 001111 2233333322222 34
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCC------hHHHHHHHHHHHHhcCcccccCccEEEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD------YLQQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~------~~~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..+.++|+||... .+. .....+..||+.++|+|++.+. ...|.....-+..-+|+. .+|++
T Consensus 85 ~~~tIiDaPGHrd-----Fvk---nmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~-----~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHRD-----FVK---NMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK-----QLIVA 151 (428)
T ss_pred ceEEEeeCCchHH-----HHH---HhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc-----eEEEE
Confidence 5689999999332 221 2233455799999999999874 233455556666777763 58999
Q ss_pred EeCCCCCCCCCC-C------------------CCCCeEEEeccCcccHHH
Q psy50 399 GNKVDAVPPGER-V------------------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 399 ~NKiDl~~~~~~-~------------------~~~~~v~iSA~~g~gi~e 429 (505)
+||+|+++-++. + ...+++||||..|+|+.+
T Consensus 152 vNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 152 VNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 999999874331 0 035699999999999865
No 287
>KOG1707|consensus
Probab=98.85 E-value=7.5e-09 Score=110.57 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+|+|..|+|||||+-+|+....+..-+.... .+++..-..++..+..++||..- + +-.. ...+++
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~----~-~~~~---~l~~Ei 77 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSD----S-DDRL---CLRKEI 77 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccc----c-chhH---HHHHHH
Confidence 456899999999999999999999864322111111 11122223467788899998741 1 1111 235778
Q ss_pred HhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
+.||++..|++++++.+.+.. ..|+-.+++++- +....|+|+|+||+|........ ....+|.+|
T Consensus 78 rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~-~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707|consen 78 RKADVICLVYAVDDESTVDRISTKWLPLIRQLFG-DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccC-CCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence 899999999999988766544 356666666641 23456999999999997655420 023579999
Q ss_pred ccCcccHHHHHHHHHHHH
Q psy50 421 ATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l 438 (505)
|++-.++.+++..-.+.+
T Consensus 157 A~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhhhHhhhhhhhhee
Confidence 999999999998877765
No 288
>PRK12740 elongation factor G; Reviewed
Probab=98.85 E-value=1.6e-08 Score=114.00 Aligned_cols=109 Identities=18% Similarity=0.095 Sum_probs=66.8
Q ss_pred EcCCCCCHHHHHHHHhCCCCCC--ccce-----e----------eeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCc
Q psy50 282 VGYTNCGKTTLIKALTDDDSLV--PRNQ-----L----------FATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLL 344 (505)
Q Consensus 282 VG~~NaGKSTLlN~L~g~~~~~--~~d~-----~----------ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~li 344 (505)
+|++|+|||||+++|....... .++. . ..|.+....... ..+..+.++||||... +.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~-----~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVD-----FT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHH-----HH
Confidence 6999999999999995432110 1110 0 011111111111 2467899999999532 11
Q ss_pred chhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 345 EPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 345 e~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
..+...+..+|++++|+|++...... ...+...+...+ .|+++|+||+|+..
T Consensus 75 ---~~~~~~l~~aD~vllvvd~~~~~~~~-~~~~~~~~~~~~------~p~iiv~NK~D~~~ 126 (668)
T PRK12740 75 ---GEVERALRVLDGAVVVVCAVGGVEPQ-TETVWRQAEKYG------VPRIIFVNKMDRAG 126 (668)
T ss_pred ---HHHHHHHHHhCeEEEEEeCCCCcCHH-HHHHHHHHHHcC------CCEEEEEECCCCCC
Confidence 22345567899999999998865443 333444444433 48999999999864
No 289
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.84 E-value=1.7e-08 Score=114.71 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcccee-----e----------eeeeeeeecccc---CCcceEEEEeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-----F----------ATLDVTTHEGML---PNRLRILYVDTIGFI 336 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-----f----------tTld~t~~~~~~---~~~~~v~l~DT~Gfi 336 (505)
+...|+++|+.++|||||+.+|+........... . .|++.......+ ..+..+.|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3457999999999999999999754322111100 0 111111111111 135678999999964
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
. +. ..+...+..+|++++|+|+..+... +.+.+.......+ .|.|+++||+|+..
T Consensus 99 d-----f~---~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~~------~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 D-----FG---GDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRER------VKPVLFINKVDRLI 153 (731)
T ss_pred C-----hH---HHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHcC------CCeEEEEECchhhc
Confidence 3 22 2344556779999999999876433 3444555444444 27799999999863
No 290
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.84 E-value=3.1e-09 Score=104.60 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee-------------------------eecccc-------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT-------------------------THEGML------- 321 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t-------------------------~~~~~~------- 321 (505)
.+..+|+|.|+||||||||+++|...........-.-..||+ ++..-.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 356789999999999999999987532100000001111111 111000
Q ss_pred ------------CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc
Q psy50 322 ------------PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE 389 (505)
Q Consensus 322 ------------~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~ 389 (505)
..+..++|+.|+|.-+ +-.+-...+|.+++|+-....+..... +-|+-+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQ-----------sE~~I~~~aD~~v~v~~Pg~GD~iQ~~--------KaGimE 167 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQ-----------SEVDIADMADTVVLVLVPGLGDEIQAI--------KAGIME 167 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSST-----------HHHHHHTTSSEEEEEEESSTCCCCCTB---------TTHHH
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCc-----------cHHHHHHhcCeEEEEecCCCccHHHHH--------hhhhhh
Confidence 0257889999999532 112334558999988875544322111 111111
Q ss_pred ccCccEEEEEeCCCCCCCCCC--------------CC--CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 390 KILEHVLVVGNKVDAVPPGER--------------VT--EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 390 ~~~~p~IlV~NKiDl~~~~~~--------------~~--~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
..=|+|+||+|+...+.. .. .+|++.+||.++.|+++|.+.|.++..
T Consensus 168 ---iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 168 ---IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp ---H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ---hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 145899999996432210 00 368999999999999999999988753
No 291
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.84 E-value=3e-08 Score=103.22 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----ccceeeeeeeeeeeccccCCc
Q psy50 249 REQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLV----PRNQLFATLDVTTHEGMLPNR 324 (505)
Q Consensus 249 ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~----~~d~~ftTld~t~~~~~~~~~ 324 (505)
-...+++.|+.+...+ ..|||+|.+|+|||||+|+|.|...-. ......+|.+++... .|..
T Consensus 20 ~~s~i~~~l~~~~~~~------------l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~ 85 (376)
T PF05049_consen 20 VVSKIREALKDIDNAP------------LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKF 85 (376)
T ss_dssp HHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-
T ss_pred HHHHHHHHHHHhhcCc------------eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCC
Confidence 3444555555554433 689999999999999999998753111 112223455444332 3555
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHH--HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLED--AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~--i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
..+.+||.||+-. +..-.+ ..++. +...|.+|++.+- ... ...-.+...++.+| +|+.+|-+|+
T Consensus 86 pnv~lWDlPG~gt--~~f~~~---~Yl~~~~~~~yD~fiii~s~--rf~-~ndv~La~~i~~~g------K~fyfVRTKv 151 (376)
T PF05049_consen 86 PNVTLWDLPGIGT--PNFPPE---EYLKEVKFYRYDFFIIISSE--RFT-ENDVQLAKEIQRMG------KKFYFVRTKV 151 (376)
T ss_dssp TTEEEEEE--GGG--SS--HH---HHHHHTTGGG-SEEEEEESS--S---HHHHHHHHHHHHTT-------EEEEEE--H
T ss_pred CCCeEEeCCCCCC--CCCCHH---HHHHHccccccCEEEEEeCC--CCc-hhhHHHHHHHHHcC------CcEEEEEecc
Confidence 6799999999743 211111 12222 4457888877542 222 23344566677665 4899999999
Q ss_pred CCC--CC-----CCC---------------------CCCCCeEEEeccCcc--cHHHHHHHHHHHHhhh
Q psy50 403 DAV--PP-----GER---------------------VTEEYDLLISATRGT--GLAQLKEKVQDMILKA 441 (505)
Q Consensus 403 Dl~--~~-----~~~---------------------~~~~~~v~iSA~~g~--gi~eL~~~I~~~l~~~ 441 (505)
|.- .. ... ...+++|.||+.+-. ++..|.+.|.+-++..
T Consensus 152 D~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 152 DSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 961 11 010 014679999998864 5888999998887654
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.9e-08 Score=104.78 Aligned_cols=146 Identities=23% Similarity=0.240 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDD--SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~--~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.|+..|+---|||||+.++++.. ..........|.|+.......+++ .+.|+|.||+- +.+ +..+..+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~-~~~fIDvpgh~-----~~i---~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG-VMGFIDVPGHP-----DFI---SNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC-ceEEeeCCCcH-----HHH---HHHHhhhc
Confidence 47888999999999999999874 233445667788877666555554 88899999942 222 33455566
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------CCCCCeEEEeccC
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------VTEEYDLLISATR 423 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------~~~~~~v~iSA~~ 423 (505)
..|..++|+|+.+.... |....+.+|+.+|+. ..++|+||+|..+.... ....+++++|+.+
T Consensus 73 ~~d~alLvV~~deGl~~-qtgEhL~iLdllgi~-----~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~ 146 (447)
T COG3276 73 GIDYALLVVAADEGLMA-QTGEHLLILDLLGIK-----NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKT 146 (447)
T ss_pred CCceEEEEEeCccCcch-hhHHHHHHHHhcCCC-----ceEEEEeccccccHHHHHHHHHHHHhhccccccccccccccc
Confidence 78999999999766543 455667788888873 46999999999865321 1245789999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|+||++|.+.|.++.
T Consensus 147 g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 147 GRGIEELKNELIDLL 161 (447)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999999988
No 293
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.81 E-value=3.1e-08 Score=97.27 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcch-hhhhHH-HHH
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEP-FKVTLE-DAM 355 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~-f~~tle-~i~ 355 (505)
+|.++|+.|+||||..+.+.+...+...-.+..|.+++.......+...+.+||.||... ..+. +....+ -++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~-----~~~~~~~~~~~~if~ 75 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD-----FMENYFNSQREEIFS 75 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCS-----TTHTTHTCCHHHHHC
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccc-----cccccccccHHHHHh
Confidence 589999999999999999998865555556678888776666556788999999999532 2222 112222 256
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------------C---CCe
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------------E---EYD 416 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------------~---~~~ 416 (505)
.++++++|+|+.+.+..+........+..+.-. ..+..+-+.++|+|++..+.... . ..+
T Consensus 76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~ 154 (232)
T PF04670_consen 76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITF 154 (232)
T ss_dssp TESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence 799999999998555555555555555443211 11347889999999976543210 2 467
Q ss_pred EEEeccCcccHHHHHHHHHHHH
Q psy50 417 LLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l 438 (505)
+.+|..+. .+-+-+..|...+
T Consensus 155 ~~TSI~D~-Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 155 FLTSIWDE-SLYEAWSKIVQKL 175 (232)
T ss_dssp EEE-TTST-HHHHHHHHHHHTT
T ss_pred EeccCcCc-HHHHHHHHHHHHH
Confidence 88888884 4444444444433
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.81 E-value=2.5e-08 Score=99.54 Aligned_cols=178 Identities=20% Similarity=0.213 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhc-cCCCCEEEEEcCCCCCHHHHHHHHhCCCC---------------C-
Q psy50 241 SKRMVLMEREQKLKKALNKLKG-QREMMRNKKQ-RQKFPTVAVVGYTNCGKTTLIKALTDDDS---------------L- 302 (505)
Q Consensus 241 ~~rr~l~~ri~~l~~eL~~l~~-~r~~~r~~r~-~~~~~~VaLVG~~NaGKSTLlN~L~g~~~---------------~- 302 (505)
-|||.+.+-|..++..-.+-.. .++..+.... -.+..+|+|.|.||||||||+.+|..... +
T Consensus 14 GdrrAlARaITlvEs~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 14 GDRRALARAITLVESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CCHHHHHHHHHHHhcCCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 4677777777665554333111 1222222222 23455899999999999999999864310 0
Q ss_pred Cccceeeeee-------e--eeeecc----cc---------------CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 303 VPRNQLFATL-------D--VTTHEG----ML---------------PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 303 ~~~d~~ftTl-------d--~t~~~~----~~---------------~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
+.+.++..-+ + ..++.. .+ --+..++++.|+|.-+.. .+-+
T Consensus 94 TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-----------v~I~ 162 (323)
T COG1703 94 TGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-----------VDIA 162 (323)
T ss_pred CCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch-----------hHHh
Confidence 1111111100 0 011110 00 025778899999954311 1223
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC--------------CC----CCCCe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE--------------RV----TEEYD 416 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~--------------~~----~~~~~ 416 (505)
..+|.+++|.=..-.+. .+.+..=+-++ -=|+|+||.|...... .. -.+++
T Consensus 163 ~~aDt~~~v~~pg~GD~---~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv 231 (323)
T COG1703 163 NMADTFLVVMIPGAGDD---LQGIKAGIMEI--------ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPV 231 (323)
T ss_pred hhcceEEEEecCCCCcH---HHHHHhhhhhh--------hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCce
Confidence 45888888865433322 22222212122 3479999999644311 00 15689
Q ss_pred EEEeccCcccHHHHHHHHHHHHhh
Q psy50 417 LLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+.+||.+|+|+++|.+.|.+....
T Consensus 232 ~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 232 VTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred eEeeeccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 295
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.79 E-value=1.1e-08 Score=96.10 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gf 335 (505)
.....|+++|.||+|||||+|+|++.....+++.+.+|....... .+..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE----eCCCEEEEECcCC
Confidence 455789999999999999999999988777888888887654322 2346889999995
No 296
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=1.7e-08 Score=92.91 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gf 335 (505)
...|+++|.||+|||||+|+|.+.....+++.+.+|...... +.+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~----~~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI----TLMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE----EcCCCEEEEECcCC
Confidence 467899999999999999999998877788888887765432 22345889999995
No 297
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.74 E-value=1.1e-07 Score=91.45 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=58.6
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
...++++|.|. .+...+. . ..+|.++.|+|+.+...... ..-..+.. .-++++||+|+
T Consensus 92 ~D~iiIEt~G~------~l~~~~~---~--~l~~~~i~vvD~~~~~~~~~-----~~~~qi~~------ad~~~~~k~d~ 149 (199)
T TIGR00101 92 LEMVFIESGGD------NLSATFS---P--ELADLTIFVIDVAAGDKIPR-----KGGPGITR------SDLLVINKIDL 149 (199)
T ss_pred CCEEEEECCCC------Ccccccc---h--hhhCcEEEEEEcchhhhhhh-----hhHhHhhh------ccEEEEEhhhc
Confidence 45677788883 1222221 1 12688999999876543211 00111111 23799999999
Q ss_pred CCCCC--C----------CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 405 VPPGE--R----------VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 405 ~~~~~--~----------~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
..... . ....+++++||++|+|+++++++|.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 150 APMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred cccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 85311 0 1256899999999999999999998765
No 298
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.73 E-value=9e-09 Score=101.61 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=52.4
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHH--HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDA--MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i--~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
.+.++||||.++-..+ .+.+..-.+.+ ...=++++++|+....... ..+-..|-.+.+.-....|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~--~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~--~f~s~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH--SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPS--KFVSSLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH--SHHHHHHHHTSSS----EEEEEE-GGG-SSHH--HHHHHHHHHHHHHHHHTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe--chhHHHHHHHHhhhcceEEEEEEecccccChh--hHHHHHHHHHHHHhhCCCCEEEeeeccC
Confidence 7899999996541110 11111111111 2345789999987543321 1111111111110111249999999999
Q ss_pred CCCCCC-----------------------C----------CCCC-CeEEEeccCcccHHHHHHHHHHHH
Q psy50 404 AVPPGE-----------------------R----------VTEE-YDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 404 l~~~~~-----------------------~----------~~~~-~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
+..... . .... .++++|+.+++|+++|+..|.+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 987210 0 0123 789999999999999999998765
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=98.72 E-value=4.3e-08 Score=112.88 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---------------eeeeeeeeccccC---------CcceEEEE
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---------------ATLDVTTHEGMLP---------NRLRILYV 330 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---------------tTld~t~~~~~~~---------~~~~v~l~ 330 (505)
....|+|+|+.++|||||+++|+............ .|++.+.....+. .+..+.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34589999999999999999998753221111111 1111110011111 14568999
Q ss_pred eeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 331 DTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 331 DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
||||+.. +. ..+...+..+|++++|+|+.++... +.+.++..+...+ .|+++++||+|+.
T Consensus 98 DtPG~~~-----f~---~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~~~------~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD-----FS---SEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQER------IRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh-----HH---HHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHHcC------CCEEEEEEChhhh
Confidence 9999643 22 2245556779999999999887543 3455555555544 3899999999987
No 300
>KOG0074|consensus
Probab=98.70 E-value=2.9e-08 Score=88.41 Aligned_cols=149 Identities=22% Similarity=0.209 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
.-.++.+.|-.||||||+++.|.+.+. ++.. .|..+.+..+...+...+.+||.-|-.. +..+.+ .++
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~---~hlt-pT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWs--NYy 83 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP---RHLT-PTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWS--NYY 83 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh---hhcc-ccCCcceEEEeecCcEEEEEEecCCccc------cchhhh--hhh
Confidence 346899999999999999999999872 2221 1112222333344568899999888322 333322 234
Q ss_pred HhhceeEEEeeCCCCChHHH-HHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~-~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
.+.|.+++|+|.++....+. -+.+.+++.+.++.. .|+.+..||-|++...... ....+-.+|
T Consensus 84 envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~---vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 84 ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE---VPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc---cceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 56899999999777654432 234555666555444 4999999999987544321 023467789
Q ss_pred ccCcccHHHHHHHHHHHH
Q psy50 421 ATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l 438 (505)
|++++|+.+-.+++....
T Consensus 161 als~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccccCccCcchhhhcCC
Confidence 999999988888876654
No 301
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.68 E-value=6.6e-08 Score=109.81 Aligned_cols=117 Identities=20% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---------cce------eeeeeeeeeecc---ccCCcceEEEEeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP---------RNQ------LFATLDVTTHEG---MLPNRLRILYVDTIGFI 336 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~---------~d~------~ftTld~t~~~~---~~~~~~~v~l~DT~Gfi 336 (505)
....|+++|+.|+|||||+++|+....... .+. ...|++...... ....+.++.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 346899999999999999999974311100 011 111222111110 11346789999999964
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
. +. ..+...+..+|++++|+|+....... ...+...+...+ .|.++++||+|...
T Consensus 98 ~-----f~---~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~~~------~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D-----FG---GDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALKEN------VKPVLFINKVDRLI 152 (720)
T ss_pred c-----cH---HHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHHcC------CCEEEEEEChhccc
Confidence 2 11 22455677899999999998754332 333344343333 37889999999864
No 302
>KOG2486|consensus
Probab=98.68 E-value=5.8e-08 Score=95.77 Aligned_cols=152 Identities=18% Similarity=0.139 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC--CccceeeeeeeeeeeccccCCcceEEEEeeee-----eeecCCCCCcchh
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQLFATLDVTTHEGMLPNRLRILYVDTIG-----FISNIPTTLLEPF 347 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~G-----fi~~lp~~lie~f 347 (505)
+.|.+++.|.+|+|||||||.++..... ........|..+.. ..-+....++|.|| +-..+|.+....-
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~----f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH----FHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee----eeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 5589999999999999999999986422 12223333332211 22356788999999 4334443332221
Q ss_pred hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------C--------
Q psy50 348 KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------V-------- 411 (505)
Q Consensus 348 ~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~-------- 411 (505)
..++-+=..--.+.+.+|++.+.... +....+++.+.++ |+.+|+||||....-.. .
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~-D~~~i~~~ge~~V------P~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPT-DNPEIAWLGENNV------PMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCC-ChHHHHHHhhcCC------CeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 22222222233355677887664332 2234566666554 99999999998643321 0
Q ss_pred -----CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 -----TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 -----~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
...|++.+|+.++.|++.|+-.|...
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 03467789999999999988777654
No 303
>KOG0393|consensus
Probab=98.68 E-value=2e-08 Score=95.53 Aligned_cols=151 Identities=20% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc--CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML--PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~--~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..++.|||..++|||+|+...+... +.+++..+-.|-....+.. .....+-+|||+|.-+ .+-+..+ .
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqed---YDrlRpl-----s 73 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQED---YDRLRPL-----S 73 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCcc---ccccccc-----C
Confidence 3578999999999999998888663 3444444333322222222 2345678999999432 1112222 3
Q ss_pred HHhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------CC---------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------VT--------- 412 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~~--------- 412 (505)
+..+|++|.++++.++.+.+.. +.|.-.++... +. .|+|+|++|.||..+... ..
T Consensus 74 Y~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~---vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~ 149 (198)
T KOG0393|consen 74 YPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PN---VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAK 149 (198)
T ss_pred CCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CC---CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHH
Confidence 5568999999999999877643 34444444432 33 599999999999843210 00
Q ss_pred ---CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 413 ---EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 413 ---~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
...++++||++..|+++.++.-......
T Consensus 150 ~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 150 EIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 3568999999999999999988777643
No 304
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.66 E-value=6.9e-08 Score=97.94 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
....+|+++|.||+|||||+|+|++.....+++.+++|.+..... -+..+.++||||++.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~----~~~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK----LGKGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE----eCCcEEEEECCCcCC
Confidence 456789999999999999999999988777888999888764322 234688999999975
No 305
>KOG0071|consensus
Probab=98.66 E-value=1.6e-07 Score=83.69 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=97.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.-.+..+|-++|||||++..|.-.....+ ++..+.. +..+ ...+..+.+||.-|. +-+..+. ..++.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~--ipTvGFn--vetV-tykN~kfNvwdvGGq------d~iRplW--rhYy~ 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFN--VETV-TYKNVKFNVWDVGGQ------DKIRPLW--RHYYT 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc--cccccee--EEEE-EeeeeEEeeeeccCc------hhhhHHH--Hhhcc
Confidence 45788999999999999999987653322 2222221 1111 135678899998882 2233221 12345
Q ss_pred hhceeEEEeeCCCCChH-HHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEec
Q psy50 356 LADIIIHVVDVSNPDYL-QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISA 421 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~-~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA 421 (505)
....+|||+|.++.+.. +....+..++..-.+.+ .|+++..||-|+....... ....+.|+||
T Consensus 84 gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~---~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 84 GTQGLIFVVDSADRDRIEEARNELHRIINDREMRD---AIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred CCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhc---ceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 67889999999876543 33345555555444333 4899999999998765421 0235789999
Q ss_pred cCcccHHHHHHHHHHHH
Q psy50 422 TRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l 438 (505)
.+|.|+.+=+.+|...+
T Consensus 161 ~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccchhHHHHHHHHHhhc
Confidence 99999999999987765
No 306
>KOG0090|consensus
Probab=98.65 E-value=6.2e-08 Score=92.18 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=90.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+.|.++|..|+|||+|+-.|...... + .++...+....... +...+.++|.||..+- -..+.+.+. .-
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~--~--TvtSiepn~a~~r~-gs~~~~LVD~PGH~rl-R~kl~e~~~----~~ 106 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR--G--TVTSIEPNEATYRL-GSENVTLVDLPGHSRL-RRKLLEYLK----HN 106 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc--C--eeeeeccceeeEee-cCcceEEEeCCCcHHH-HHHHHHHcc----cc
Confidence 4478999999999999999998765311 1 11222222111111 2334789999994320 001112211 11
Q ss_pred HhhceeEEEeeCCC--CChHHHHHHHHHHHHhcC-cccccCccEEEEEeCCCCCCCCCC------------------C--
Q psy50 355 MLADIIIHVVDVSN--PDYLQQKQHVDETLQHLE-LEEKILEHVLVVGNKVDAVPPGER------------------V-- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~--~~~~~~~~~v~~~L~~lg-~~~~~~~p~IlV~NKiDl~~~~~~------------------~-- 411 (505)
..+-.++||+|..- ++..+..+.+.++|-.-. +.+ ..|++++.||.|+...... .
T Consensus 107 ~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~--~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~ 184 (238)
T KOG0090|consen 107 YSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKN--KPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSAL 184 (238)
T ss_pred ccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccC--CCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 25789999999763 333333455566655442 222 3589999999998654321 0
Q ss_pred ---------------------C-------CCCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 ---------------------T-------EEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 ---------------------~-------~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
. ...+.+.|++++ +++++.+||.+.
T Consensus 185 ~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 185 RSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 124678999988 899999999875
No 307
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=8.1e-08 Score=96.89 Aligned_cols=60 Identities=25% Similarity=0.214 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.....++++|+||+|||||+|+|++.....+++.+++|..+.... + +..+.++||||++.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~l~DtPG~~~ 175 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK--L--SDGLELLDTPGILW 175 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE--e--CCCEEEEECCCccc
Confidence 345789999999999999999999987677888888888754322 2 23678999999975
No 308
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.63 E-value=9.6e-08 Score=87.74 Aligned_cols=58 Identities=33% Similarity=0.338 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gf 335 (505)
.....++++|.||+|||||+|+|++.....+++.+++|.+.... ..+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~----~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV----KLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE----EecCCEEEEECCCC
Confidence 45688999999999999999999998755667777777765432 12356899999995
No 309
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.63 E-value=5.9e-08 Score=99.99 Aligned_cols=60 Identities=32% Similarity=0.338 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.....|.+||+||+|||||||+|.+...+.+++.+..|.....-. -...+.++||||++.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~----~~~~i~LlDtPGii~ 189 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIK----LDDGIYLLDTPGIIP 189 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEE----cCCCeEEecCCCcCC
Confidence 345679999999999999999999998888999998887654322 234488999999986
No 310
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.62 E-value=2.4e-07 Score=106.84 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---------------eeeeeeeecccc---------------CCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---------------ATLDVTTHEGML---------------PNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---------------tTld~t~~~~~~---------------~~~ 324 (505)
+...|+|+|+.++|||||+++|+............ .|++...-...+ ..+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45689999999999999999998654221111100 111111001111 125
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
..+.++||||+.. .. ..+...+..+|..++|+|+..+... +.+.++..+...+ .|+++++||+|+
T Consensus 98 ~~inliDtPGh~d-----F~---~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~~~------~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVD-----FS---SEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALGER------IRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHH-----HH---HHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHHCC------CCEEEEEECCcc
Confidence 6678999999532 11 2345556779999999999877543 3455555555444 389999999998
Q ss_pred CC
Q psy50 405 VP 406 (505)
Q Consensus 405 ~~ 406 (505)
..
T Consensus 163 ~~ 164 (843)
T PLN00116 163 CF 164 (843)
T ss_pred cc
Confidence 73
No 311
>KOG0461|consensus
Probab=98.62 E-value=1.6e-07 Score=94.82 Aligned_cols=151 Identities=27% Similarity=0.386 Sum_probs=95.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCc------cceeeeeeeeeeec------cccC--CcceEEEEeeeeeeecCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVP------RNQLFATLDVTTHE------GMLP--NRLRILYVDTIGFISNIPT 341 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~------~d~~ftTld~t~~~------~~~~--~~~~v~l~DT~Gfi~~lp~ 341 (505)
...++++|+-.+|||||.++|+....... +..-..|+|.-... ..+| ...++.++|.||. .
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-----a 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-----A 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-----H
Confidence 35789999999999999999975431110 01112233322111 1122 3457789999993 2
Q ss_pred CCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------
Q psy50 342 TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------- 411 (505)
Q Consensus 342 ~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------- 411 (505)
.++. ..+....-.|+.++|+|+....... ....+ ++-++-+ +..++|+||+|..+.....
T Consensus 82 sLIR---tiiggaqiiDlm~lviDv~kG~QtQ-tAEcL-iig~~~c-----~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 82 SLIR---TIIGGAQIIDLMILVIDVQKGKQTQ-TAECL-IIGELLC-----KKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred HHHH---HHHhhhheeeeeeEEEehhcccccc-cchhh-hhhhhhc-----cceEEEEeccccccchhhhhHHHHHHHHH
Confidence 3433 2344455579999999998654222 11111 1222212 3689999999988764321
Q ss_pred ----------CCCCeEEEeccCc----ccHHHHHHHHHHHHhhh
Q psy50 412 ----------TEEYDLLISATRG----TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 412 ----------~~~~~v~iSA~~g----~gi~eL~~~I~~~l~~~ 441 (505)
...|++++||+.| ++|.+|++.|...+.+.
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 0468999999999 89999999999888653
No 312
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.61 E-value=2.5e-07 Score=96.69 Aligned_cols=154 Identities=25% Similarity=0.266 Sum_probs=100.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC-----ccceeeeeeeeeee---------ccccCCcceEEEEeeeeeeecCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLV-----PRNQLFATLDVTTH---------EGMLPNRLRILYVDTIGFISNIP 340 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-----~~d~~ftTld~t~~---------~~~~~~~~~v~l~DT~Gfi~~lp 340 (505)
....||||-+-..|||||...|+.....+ +......+-|.... .....++..+.++||||.-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--- 80 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--- 80 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC---
Confidence 34579999999999999999998764221 11111111111111 11123578899999999432
Q ss_pred CCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------
Q psy50 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------- 411 (505)
Q Consensus 341 ~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------- 411 (505)
.-....+. +...|.+++++|+++.... |...+.+-.-+.|+ +-|+|+||+|........
T Consensus 81 --FGGEVERv---l~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~~gL------~PIVVvNKiDrp~Arp~~Vvd~vfDLf 148 (603)
T COG1217 81 --FGGEVERV---LSMVDGVLLLVDASEGPMP-QTRFVLKKALALGL------KPIVVINKIDRPDARPDEVVDEVFDLF 148 (603)
T ss_pred --ccchhhhh---hhhcceEEEEEEcccCCCC-chhhhHHHHHHcCC------CcEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 22222222 3348999999999987643 45666554444555 568899999987654310
Q ss_pred ---------CCCCeEEEeccCcc----------cHHHHHHHHHHHHhhhcC
Q psy50 412 ---------TEEYDLLISATRGT----------GLAQLKEKVQDMILKATG 443 (505)
Q Consensus 412 ---------~~~~~v~iSA~~g~----------gi~eL~~~I~~~l~~~~~ 443 (505)
-..|+++.||+.|. ++..|++.|.++++....
T Consensus 149 ~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 149 VELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred HHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 05689999999984 688999999999876543
No 313
>KOG0077|consensus
Probab=98.61 E-value=7.1e-08 Score=88.25 Aligned_cols=147 Identities=25% Similarity=0.285 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
++..++.+.|--|||||||++.|-... . .+...|+.+|..... ..+..+.-.|.-|... +-+.-.+.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDr-l---~qhvPTlHPTSE~l~-Ig~m~ftt~DLGGH~q--------Arr~wkdy 84 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDR-L---GQHVPTLHPTSEELS-IGGMTFTTFDLGGHLQ--------ARRVWKDY 84 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccc-c---cccCCCcCCChHHhe-ecCceEEEEccccHHH--------HHHHHHHH
Confidence 356789999999999999999997653 1 333445655554432 3678888899888321 11223455
Q ss_pred HHhhceeEEEeeCCCCChHH-HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC--------------------
Q psy50 354 AMLADIIIHVVDVSNPDYLQ-QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT-------------------- 412 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~-~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~-------------------- 412 (505)
+..+|.+++.+|+.+..... .......++..-.+ ...|+++..||+|.........
T Consensus 85 f~~v~~iv~lvda~d~er~~es~~eld~ll~~e~l---a~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~ 161 (193)
T KOG0077|consen 85 FPQVDAIVYLVDAYDQERFAESKKELDALLSDESL---ATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLT 161 (193)
T ss_pred HhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHH---hcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccccc
Confidence 77899999999998765442 22222333322222 2359999999999876542100
Q ss_pred -----CCCeEEEeccCcccHHHHHHHHHH
Q psy50 413 -----EEYDLLISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 413 -----~~~~v~iSA~~g~gi~eL~~~I~~ 436 (505)
...++.+|...+.|..+-+.++..
T Consensus 162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred CCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 123677777777775555554443
No 314
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.1e-07 Score=96.60 Aligned_cols=139 Identities=26% Similarity=0.258 Sum_probs=93.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc--------------------------------ceeeeeeeeeeeccccC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPR--------------------------------NQLFATLDVTTHEGMLP 322 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~--------------------------------d~~ftTld~t~~~~~~~ 322 (505)
...++.-+|.-.-|||||+-+|+-.....-. -....|+|+..+... -
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs-T 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS-T 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc-c
Confidence 4567888999999999999999754321100 111235555444332 2
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
...++++.||||..+ -..++. -....||+.++++|+.... .+|.....-+..-+|+. .+++++||+
T Consensus 84 ~KRkFIiADTPGHeQ-YTRNMa-------TGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGIr-----hvvvAVNKm 149 (431)
T COG2895 84 EKRKFIIADTPGHEQ-YTRNMA-------TGASTADLAILLVDARKGV-LEQTRRHSFIASLLGIR-----HVVVAVNKM 149 (431)
T ss_pred ccceEEEecCCcHHH-Hhhhhh-------cccccccEEEEEEecchhh-HHHhHHHHHHHHHhCCc-----EEEEEEeee
Confidence 467899999999432 111221 1234599999999997664 44566666677777873 689999999
Q ss_pred CCCCCCCCC-----------------CCCCeEEEeccCcccHH
Q psy50 403 DAVPPGERV-----------------TEEYDLLISATRGTGLA 428 (505)
Q Consensus 403 Dl~~~~~~~-----------------~~~~~v~iSA~~g~gi~ 428 (505)
||++-++.. ....++|+||+.|.|+-
T Consensus 150 DLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 150 DLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 999876520 13468999999999875
No 315
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=1.4e-07 Score=88.03 Aligned_cols=59 Identities=27% Similarity=0.202 Sum_probs=46.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gf 335 (505)
.....+++++|.||+|||||+|+|++.....+++.+++|.+...... ...+.++||||+
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~----~~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI----SPGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe----cCCEEEEECCCC
Confidence 34557899999999999999999999775566777788877554222 146789999996
No 316
>KOG0458|consensus
Probab=98.53 E-value=3e-07 Score=98.56 Aligned_cols=142 Identities=25% Similarity=0.309 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-C---------------Cccceeee--------------eeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDS-L---------------VPRNQLFA--------------TLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~-~---------------~~~d~~ft--------------Tld~t~~~~~~~~~ 324 (505)
.....+++|..+|||||||-.|+-... + -.++..|+ |.++.+.... ...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SKS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cCc
Confidence 445678999999999999998863210 0 01111111 2221111111 245
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChH------HHHHHHHHHHHhcCcccccCccEEEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL------QQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~------~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..+.++|+||.-.-.| +++ ..+..||+.++|+|++-...+ .|......+|+.+|+. ..|++
T Consensus 255 ~~~tliDaPGhkdFi~-nmi-------~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~-----qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIP-NMI-------SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS-----QLIVA 321 (603)
T ss_pred eeEEEecCCCccccch-hhh-------ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc-----eEEEE
Confidence 6789999999322112 322 234469999999999865432 3566778889999974 58999
Q ss_pred EeCCCCCCCCCC-C-------------------CCCCeEEEeccCcccHHHH
Q psy50 399 GNKVDAVPPGER-V-------------------TEEYDLLISATRGTGLAQL 430 (505)
Q Consensus 399 ~NKiDl~~~~~~-~-------------------~~~~~v~iSA~~g~gi~eL 430 (505)
+||+|++.=++. + ....++|||+++|+|+-..
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred eecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999999864431 0 0237999999999997543
No 317
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=1.7e-07 Score=88.86 Aligned_cols=56 Identities=38% Similarity=0.285 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC--------CCccceeeeeeeeeeeccccCCcceEEEEeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDS--------LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~--------~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gf 335 (505)
...++++|.||+|||||+|+|.+... +.++..+++|.++..... +..+.++|||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 35799999999999999999998532 345677788887654322 225789999996
No 318
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.1e-07 Score=92.90 Aligned_cols=116 Identities=21% Similarity=0.152 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC--------Cccceeee-----------eeeeeeecccc-CCcceEEEEeeeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSL--------VPRNQLFA-----------TLDVTTHEGML-PNRLRILYVDTIGFIS 337 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~--------~~~d~~ft-----------Tld~t~~~~~~-~~~~~v~l~DT~Gfi~ 337 (505)
+.|||-+|.||||||-..|+-...+ ..++..++ ++.++.....+ ..+..+.+.||||.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH-- 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH-- 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc--
Confidence 7899999999999999887522100 00111122 22222222222 35778899999993
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
.+..|. |+.-+.-+|..++|+|+..+. +.+...+.++.+--+ .|++..+||.|....+
T Consensus 92 ---eDFSED---TYRtLtAvDsAvMVIDaAKGi-E~qT~KLfeVcrlR~------iPI~TFiNKlDR~~rd 149 (528)
T COG4108 92 ---EDFSED---TYRTLTAVDSAVMVIDAAKGI-EPQTLKLFEVCRLRD------IPIFTFINKLDREGRD 149 (528)
T ss_pred ---cccchh---HHHHHHhhheeeEEEecccCc-cHHHHHHHHHHhhcC------CceEEEeeccccccCC
Confidence 233333 444455589999999998875 344555566555333 3999999999986543
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.51 E-value=5.1e-07 Score=85.25 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=48.0
Q ss_pred eeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------CCCCCeEEEeccCccc
Q psy50 359 IIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------VTEEYDLLISATRGTG 426 (505)
Q Consensus 359 liL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------~~~~~~v~iSA~~g~g 426 (505)
+-++|+|++...... .+.| +... +.-++|+||.|+.+.-.. .+..+++++|+++|+|
T Consensus 120 ~~v~VidvteGe~~P---------~K~g-P~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 120 LRVVVIDVTEGEDIP---------RKGG-PGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred eEEEEEECCCCCCCc---------ccCC-Ccee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 678888888765322 1111 1111 145799999999876542 1256899999999999
Q ss_pred HHHHHHHHHHHH
Q psy50 427 LAQLKEKVQDMI 438 (505)
Q Consensus 427 i~eL~~~I~~~l 438 (505)
++++++++....
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 320
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=1.3e-07 Score=85.43 Aligned_cols=55 Identities=31% Similarity=0.424 Sum_probs=41.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
+++++|.||+|||||+|+|++......++.+..|...... .+. ..+.++|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTI--FLT--PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEE--EeC--CCEEEEECCCcC
Confidence 7999999999999999999998755555555555554321 122 257899999986
No 321
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.48 E-value=7e-08 Score=93.92 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=96.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..|+|+|++|||||||||.|.+.+.++.+.+.+.+.+++.-. .....-.--+..||+.|.. ++++.+. ..+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~---~~~~~~~R~~~iGfvFQ~~-nLl~~lt-v~E 102 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLS---EKELAKLRRKKIGFVFQNF-NLLPDLT-VLE 102 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCC---HHHHHHHHHHhEEEECccC-CCCCCCC-HHH
Confidence 3578899999999999999999999999888888888876654321 1111223356789999864 7777763 355
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccC--cc-------------EEEEEeCCCCCCCCCCCCCCCeE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKIL--EH-------------VLVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~--~p-------------~IlV~NKiDl~~~~~~~~~~~~v 417 (505)
.+.-+ +.+...+.. ...+....+++.+|+.+... .| .-.++|..+++-.++
T Consensus 103 Nv~lp---l~~~~~~~~---~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE-------- 168 (226)
T COG1136 103 NVELP---LLIAGKSAG---RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE-------- 168 (226)
T ss_pred HHHhH---HHHcCCChh---HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC--------
Confidence 54322 111111111 23445566777777753221 12 123455666555565
Q ss_pred EEeccCcccHHHHHHHHHHHHhh
Q psy50 418 LISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
|+++++-.+-+++++.+.+...+
T Consensus 169 PTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 169 PTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred ccccCChHHHHHHHHHHHHHHHh
Confidence 78999999999999998887643
No 322
>KOG0072|consensus
Probab=98.47 E-value=1.8e-07 Score=83.75 Aligned_cols=148 Identities=23% Similarity=0.217 Sum_probs=95.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..++.++|--|+||+|++-++--.+.+++.+.+. ..+. .+ ...+.++.+||.-|-- + +..+. .-++.
T Consensus 18 e~rililgldGaGkttIlyrlqvgevvttkPtig--fnve--~v-~yKNLk~~vwdLggqt-----S-irPyW--RcYy~ 84 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEVVTTKPTIG--FNVE--TV-PYKNLKFQVWDLGGQT-----S-IRPYW--RCYYA 84 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCcccccCCCCC--cCcc--cc-ccccccceeeEccCcc-----c-ccHHH--HHHhc
Confidence 3578999999999999887765444333222211 1111 11 1256788999988832 1 22221 12345
Q ss_pred hhceeEEEeeCCCCChHHH-HHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEec
Q psy50 356 LADIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISA 421 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~-~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA 421 (505)
+.|.+++|+|.++.+.-.. ...+..+|.+-.+.. ..+++++||.|........ ....+|..||
T Consensus 85 dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~---a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA 161 (182)
T KOG0072|consen 85 DTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH---AKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSA 161 (182)
T ss_pred ccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC---ceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecc
Confidence 6899999999998765332 234455565544333 3688999999975443211 1346899999
Q ss_pred cCcccHHHHHHHHHHHHh
Q psy50 422 TRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~ 439 (505)
.+|+|+++.++|+.+-+.
T Consensus 162 ~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ccccCCcHHHHHHHHHHh
Confidence 999999999999998774
No 323
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.44 E-value=2.3e-07 Score=89.00 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..|+|+|++|+||||||.+|.+...+..+.+.+.+.++.... .. ..+--.+|++.|.. +++..+ +.+++
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~-----~~~R~~vGmVFQ~f-nLFPHl-TvleN 97 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DI-----LKLRRKVGMVFQQF-NLFPHL-TVLEN 97 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hH-----HHHHHhcCeecccc-cccccc-hHHHH
Confidence 567899999999999999999999998888888888775443211 00 01122467777654 565554 45666
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CCCCCe----
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VTEEYD---- 416 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~~~~~---- 416 (505)
+..|-..+. .....+..+...++|..+|+.+. .|..+..-- .-.+.+
T Consensus 98 v~lap~~v~-----~~~k~eA~~~A~~lL~~VGL~~k-----------a~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 98 VTLAPVKVK-----KLSKAEAREKALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred HHhhhHHHc-----CCCHHHHHHHHHHHHHHcCchhh-----------hhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 655543332 22334456667888988887542 232221100 001111
Q ss_pred EEEeccCcccHHHHHHHHHHHHhhhc
Q psy50 417 LLISATRGTGLAQLKEKVQDMILKAT 442 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~~~~ 442 (505)
=|+||++.+-+.++++.+.+...+-+
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGm 187 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGM 187 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 17999999999999999999886643
No 324
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.43 E-value=2.4e-07 Score=85.83 Aligned_cols=61 Identities=28% Similarity=0.319 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCcc---ceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPR---NQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~---d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.+++++|.+|||||||+|+|.+.....++ .....+..+|++...++-.....++|||||..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCc
Confidence 68999999999999999999998533332 22233333443332222223457899999864
No 325
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.42 E-value=6e-07 Score=87.89 Aligned_cols=94 Identities=17% Similarity=0.036 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCccceeeeeeeeeeecccc--CCcceEEEEeeeeeeecCCCCCcchhhh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD--DSLVPRNQLFATLDVTTHEGML--PNRLRILYVDTIGFISNIPTTLLEPFKV 349 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~--~~~~~~d~~ftTld~t~~~~~~--~~~~~v~l~DT~Gfi~~lp~~lie~f~~ 349 (505)
.+...|+|+|++++|||||||.|++. ..........+|..+-...... ..+..++++||+|+....... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--FEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--hhhhh
Confidence 35568999999999999999999998 3222223344444433322211 135789999999986522111 01222
Q ss_pred hHHHHH--hhceeEEEeeCCCC
Q psy50 350 TLEDAM--LADIIIHVVDVSNP 369 (505)
Q Consensus 350 tle~i~--~ADliL~VvD~s~~ 369 (505)
.+-.+. -+|++++..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 233333 38999998887543
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.38 E-value=1.2e-06 Score=80.27 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=58.4
Q ss_pred HHHHH-hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CCCCCeEEEec
Q psy50 351 LEDAM-LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VTEEYDLLISA 421 (505)
Q Consensus 351 le~i~-~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~~v~iSA 421 (505)
++.+. .+|++++|+|++++.... ...+...+...+ +|+++|+||+|+...... ....+++++||
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~-~~~l~~~~~~~~------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa 78 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTR-SRKLERYVLELG------KKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSA 78 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccC-CHHHHHHHHhCC------CcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34443 499999999998865432 223333333222 599999999998643211 01346899999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
+++.|+++|++.|.+.++.
T Consensus 79 ~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 79 KERLGTKILRRTIKELAKI 97 (156)
T ss_pred cccccHHHHHHHHHHHHhh
Confidence 9999999999999998864
No 327
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.37 E-value=2.6e-06 Score=86.15 Aligned_cols=126 Identities=25% Similarity=0.323 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccc-------eeeeeeeeeeeccccC---CcceEEEEeeeeeeecCCCC----
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRN-------QLFATLDVTTHEGMLP---NRLRILYVDTIGFISNIPTT---- 342 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d-------~~ftTld~t~~~~~~~---~~~~v~l~DT~Gfi~~lp~~---- 342 (505)
..|.++|.+|+|||||+|.|++........ ....+..+..+...+. -...+.++|||||-......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 468999999999999999999975332210 1112222222222221 23568899999986432210
Q ss_pred Cc-----chhhhhHHHH----------HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 343 LL-----EPFKVTLEDA----------MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 343 li-----e~f~~tle~i----------~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.+ +.|...+.+- ...|++|++++.+.....+.+- ..++.+.- ..++|-|+.|+|.+..
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di---~~mk~Ls~----~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI---EFMKRLSK----RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH---HHHHHHTT----TSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH---HHHHHhcc----cccEEeEEecccccCH
Confidence 00 1111112110 2358899999976543222222 23444421 1478999999998776
Q ss_pred CC
Q psy50 408 GE 409 (505)
Q Consensus 408 ~~ 409 (505)
.+
T Consensus 158 ~e 159 (281)
T PF00735_consen 158 EE 159 (281)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 328
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.35 E-value=1.7e-06 Score=88.94 Aligned_cols=147 Identities=21% Similarity=0.197 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee------------------ecc----------------c
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT------------------HEG----------------M 320 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~------------------~~~----------------~ 320 (505)
++..++++|+||+||||++..|.+......+.....+.|+.. ... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999976532222222222222210 000 0
Q ss_pred cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH-----HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE
Q psy50 321 LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA-----MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395 (505)
Q Consensus 321 ~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i-----~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~ 395 (505)
...+..++++||||..... .++++.+....+.+ ...+..++|+|++.... .........+.++ +.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~-~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~-------~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK-TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVG-------LT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC-HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCC-------CC
Confidence 1235679999999964321 13334443322222 13567889999985432 2222333333332 45
Q ss_pred EEEEeCCCCCCCCCC------CCCCCeEEEeccCcccHHHHHHH
Q psy50 396 LVVGNKVDAVPPGER------VTEEYDLLISATRGTGLAQLKEK 433 (505)
Q Consensus 396 IlV~NKiDl~~~~~~------~~~~~~v~iSA~~g~gi~eL~~~ 433 (505)
-+|+||.|-...... ....|+.+++ +|+++++|...
T Consensus 263 giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 263 GIILTKLDGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred EEEEECCCCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 689999995433211 0156888888 88888887544
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.35 E-value=6.5e-07 Score=82.32 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=60.2
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------C-C-CCeEEEec
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------T-E-EYDLLISA 421 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------~-~-~~~v~iSA 421 (505)
+..+.+||++++|+|+++|... ....+.+.+.... ..+|+++|+||+|+.+..... . . ..++++||
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~~----~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa 77 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKEK----PHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccc-cCHHHHHHHHhcc----CCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeec
Confidence 5567789999999999987543 2345566665431 125999999999997543210 1 1 12588999
Q ss_pred cCcccHHHHHHHHHHHH
Q psy50 422 TRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l 438 (505)
+.+.|+++|++.|.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999998875
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=5.5e-07 Score=93.76 Aligned_cols=56 Identities=34% Similarity=0.305 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceee-------eeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF-------ATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f-------tTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.++|+|+||||||||+|+|.+.....++++.. ||.+... ..++++ ..++|||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l--~~l~~g--~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL--FELPNG--GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE--EECCCC--cEEEeCCCccc
Confidence 58999999999999999999876565665555 3433322 123333 27999999865
No 331
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=7.4e-07 Score=88.44 Aligned_cols=60 Identities=25% Similarity=0.207 Sum_probs=39.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
..++++|+||||||||+|+|.+.....++++.. .+..+|++...+.- ....++|||||..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccc
Confidence 378999999999999999999876555555443 12223322211111 1237999999976
No 332
>PRK13796 GTPase YqeH; Provisional
Probab=98.30 E-value=7.8e-07 Score=93.30 Aligned_cols=57 Identities=33% Similarity=0.356 Sum_probs=41.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC-----CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD-----SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~-----~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
..+.+||.||||||||+|+|.+.. .++++..+.+|++..... +.+ ...++||||++.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l~~--~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--LDD--GSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--cCC--CcEEEECCCccc
Confidence 479999999999999999998542 234667778887754321 222 247999999874
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.29 E-value=4.2e-07 Score=94.52 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=39.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeec--cccCCcceEEEEeeeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHE--GMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~--~~~~~~~~v~l~DT~Gfi~ 337 (505)
.++|+|.||||||||+|+|.+.....++++.. .+..+|+.. ..++.+ ..++|||||..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~--~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG--GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC--CEEEECCCCCc
Confidence 58999999999999999999886555555543 222333322 122333 35899999865
No 334
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.29 E-value=1.2e-06 Score=91.70 Aligned_cols=57 Identities=33% Similarity=0.341 Sum_probs=43.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC-----CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD-----SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~-----~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
..|.+||.||||||||+|+|++.. .+.+++.+.+|++..... + +..+.++||||+..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~--~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L--DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e--CCCCEEEECCCCCC
Confidence 589999999999999999999853 245677888888754321 2 23467999999875
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.26 E-value=3.8e-06 Score=84.68 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee------------------ee---------cc-------c
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT------------------TH---------EG-------M 320 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t------------------~~---------~~-------~ 320 (505)
+...|+++|++|+||||++..|..............+.|+. .. .. .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999988886432111111211222210 00 00 0
Q ss_pred cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh------hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc
Q psy50 321 LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML------ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394 (505)
Q Consensus 321 ~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~------ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p 394 (505)
...+..++++||||..... ..+++.+....+ +.. +|.+++|+|++.. .+.........+.++ +
T Consensus 151 ~~~~~D~ViIDT~G~~~~d-~~~~~el~~~~~-~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-------~ 219 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNK-VNLMDELKKIKR-VIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-------L 219 (272)
T ss_pred HHCCCCEEEEeCCCCCcch-HHHHHHHHHHHH-HHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-------C
Confidence 1245688999999965321 122333322222 223 7899999999743 222333333343343 3
Q ss_pred EEEEEeCCCCCCCCCC------CCCCCeEEEeccCcccHHHHHHH
Q psy50 395 VLVVGNKVDAVPPGER------VTEEYDLLISATRGTGLAQLKEK 433 (505)
Q Consensus 395 ~IlV~NKiDl~~~~~~------~~~~~~v~iSA~~g~gi~eL~~~ 433 (505)
.-+|+||+|....... ....|+.+++ +|+++++|...
T Consensus 220 ~g~IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 220 TGIILTKLDGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CEEEEEccCCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 5689999997543321 0146777777 78888776543
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.25 E-value=3.3e-06 Score=77.33 Aligned_cols=57 Identities=32% Similarity=0.332 Sum_probs=40.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gf 335 (505)
....++++|.+|+|||||+|+|.+.....+.+...+|..... ...+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL----VKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE----EEcCCCEEEEECcCC
Confidence 456789999999999999999998654444555555543321 112346889999995
No 337
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=4.8e-06 Score=93.46 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC--Ccccee----e-----------eeeeeeeeccccCCcceEEEEeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQL----F-----------ATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~----f-----------tTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
.+...|+|+|+-.+|||||..+|+-.... ..++.. + .|+........+.+...+.++||||++
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 34568999999999999999998643211 112221 0 111111111222224899999999976
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
+ ... .+...++-+|..+.|+|+...- ..|.+.++..+.+.++ |.++++||+|....+
T Consensus 88 D-----Ft~---EV~rslrvlDgavvVvdaveGV-~~QTEtv~rqa~~~~v------p~i~fiNKmDR~~a~ 144 (697)
T COG0480 88 D-----FTI---EVERSLRVLDGAVVVVDAVEGV-EPQTETVWRQADKYGV------PRILFVNKMDRLGAD 144 (697)
T ss_pred c-----cHH---HHHHHHHhhcceEEEEECCCCe-eecHHHHHHHHhhcCC------CeEEEEECccccccC
Confidence 4 111 1334456699999999998764 4567788888877764 899999999987654
No 338
>KOG1424|consensus
Probab=98.24 E-value=6.3e-07 Score=94.91 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
+...+|++||||||||||+||+|.|.+.+.+...+.-|..+.+-. + ...+.+.|+||++.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--l--s~~v~LCDCPGLVf 371 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--L--SPSVCLCDCPGLVF 371 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--c--CCCceecCCCCccc
Confidence 346789999999999999999999998777666666655443311 1 23577899999886
No 339
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=3.6e-06 Score=82.56 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=80.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
-..+..|+|+|++|||||||+|.+.|...++.+.+...+..++. +. .-.|++.|.+ .+... ++.++
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~-------~~~~~vFQ~~-~LlPW-~Tv~~ 91 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PG-------PDIGYVFQED-ALLPW-LTVLD 91 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CC-------CCEEEEeccC-cccch-hhHHh
Confidence 35788999999999999999999999988877777665554311 11 1235566544 34443 33333
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCc-c-------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE-H-------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~-p-------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
+ +.+-++.......+..+.+.+.|+..|+.+..++ | .-..++..+++-.++ |
T Consensus 92 N------V~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE--------P 157 (248)
T COG1116 92 N------VALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE--------P 157 (248)
T ss_pred h------heehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 3 3333343322233334567788888887543211 1 012223333333333 6
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.||++-.-=..|.+.+.++..+
T Consensus 158 FgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 158 FGALDALTREELQDELLRLWEE 179 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHh
Confidence 7888776666666666665543
No 340
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.20 E-value=1.6e-06 Score=80.98 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=63.2
Q ss_pred CCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CC
Q psy50 342 TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TE 413 (505)
Q Consensus 342 ~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~ 413 (505)
++-..++...+.+..||++++|+|++++..... ..+ +..+. .+|.++|+||+|+....... ..
T Consensus 5 ~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i---~~~~~-----~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~ 75 (171)
T cd01856 5 HMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLL---EKILG-----NKPRIIVLNKADLADPKKTKKWLKYFESKG 75 (171)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhh---HhHhc-----CCCEEEEEehhhcCChHHHHHHHHHHHhcC
Confidence 344555667788899999999999987754321 222 22221 24899999999997542210 12
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
..++++||+++.|+++|.+.|.+.+.
T Consensus 76 ~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 35799999999999999999999864
No 341
>PRK00098 GTPase RsgA; Reviewed
Probab=98.20 E-value=1.5e-06 Score=88.80 Aligned_cols=60 Identities=33% Similarity=0.318 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeec--cccCCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHE--GMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~--~~~~~~~~v~l~DT~Gfi~ 337 (505)
+..++++|+||||||||+|+|++.....++++.. .+..+|... ..++. ...++|||||..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~--~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG--GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC--CcEEEECCCcCc
Confidence 3579999999999999999999987666666654 122222221 11222 247899999874
No 342
>PRK14974 cell division protein FtsY; Provisional
Probab=98.19 E-value=4e-06 Score=86.78 Aligned_cols=146 Identities=22% Similarity=0.201 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee------------------eecc--------------c--
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT------------------THEG--------------M-- 320 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t------------------~~~~--------------~-- 320 (505)
+...|+++|+||+||||++..|..............+.|+. .... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35689999999999999888776421000001111111110 0000 0
Q ss_pred cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEe
Q psy50 321 LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGN 400 (505)
Q Consensus 321 ~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~N 400 (505)
...+..++++||+|.... +.++++.++. +......|.+++|+|++... +...........++ .--+++|
T Consensus 219 ~~~~~DvVLIDTaGr~~~-~~~lm~eL~~-i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~-------~~giIlT 287 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHT-DANLMDELKK-IVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG-------IDGVILT 287 (336)
T ss_pred HhCCCCEEEEECCCccCC-cHHHHHHHHH-HHHhhCCceEEEeeccccch--hHHHHHHHHHhcCC-------CCEEEEe
Confidence 012456999999996532 1234444432 22344689999999987543 22222222222333 3468999
Q ss_pred CCCCCCCCCC------CCCCCeEEEeccCcccHHHHHHH
Q psy50 401 KVDAVPPGER------VTEEYDLLISATRGTGLAQLKEK 433 (505)
Q Consensus 401 KiDl~~~~~~------~~~~~~v~iSA~~g~gi~eL~~~ 433 (505)
|.|....... ....|+.+++ +|+++++|..+
T Consensus 288 KlD~~~~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 288 KVDADAKGGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred eecCCCCccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 9997543221 0156888887 79999887643
No 343
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.2e-06 Score=85.00 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=92.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
.+.+..|+|||++||||||||.+|.+.-.++.+.+.+.+.+++..... ..-.+-.-.|+++|.+ +++.... .++
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k----~lr~~r~~iGmIfQ~~-nLv~r~s-v~~ 100 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK----ELRKLRRDIGMIFQQF-NLVPRLS-VLE 100 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH----HHHHHHHhceeEeccC-CcccccH-HHH
Confidence 467889999999999999999999998777788888888766432211 0001123468888765 6766542 233
Q ss_pred HHHhhcee--EEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCe----E
Q psy50 353 DAMLADII--IHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYD----L 417 (505)
Q Consensus 353 ~i~~ADli--L~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~----v 417 (505)
.+...-+- -.+...-.-.+.++....++.|+.+|+.+. ++-|+|-+..-... ..+.+ =
T Consensus 101 NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-------A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 101 NVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-------AYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred HHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-------HHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 32111000 000000111234456667888888887542 23334433222110 01111 1
Q ss_pred EEeccCcccHHHHHHHHHHHHhhh
Q psy50 418 LISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
|+++++...-..+++.|.+.-.+.
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHc
Confidence 799999999999999998876543
No 344
>KOG0096|consensus
Probab=98.17 E-value=4.7e-06 Score=78.06 Aligned_cols=150 Identities=20% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc---CCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML---PNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~---~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
..+..++|..|.||+|+.++...... ...+ ..|+....+.... .+...+..|||+|.-... .+-..
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeF--e~~y-~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g--glrdg------ 78 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEF--EKTY-PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG--GLRDG------ 78 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccc--eecc-cCcceeEEeeeeeecccCcEEEEeeecccceeec--ccccc------
Confidence 45789999999999999999765431 1111 1222222222111 234788999999942211 11111
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEEeccCc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLISATRG 424 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~iSA~~g 424 (505)
.+..+.+.++++|+....+......|.+-+.... . +.|+++++||.|........ ....++.+||+++
T Consensus 79 yyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~---NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 79 YYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-E---NIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred cEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-c---CCCeeeeccceeccccccccccceeeecccceeEEeecccc
Confidence 1224567788899988777666666666555432 1 25999999999976654211 1456899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|.+.-+-++.+.+..
T Consensus 155 ~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 155 YNFERPFLWLARKLTG 170 (216)
T ss_pred cccccchHHHhhhhcC
Confidence 9999999999998843
No 345
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.5e-06 Score=87.35 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=88.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
.+.+...+|||++|||||||+.++.+...++.+.+...+.+++.-. ...-..+---+|+|+|.+ ++..+. ...+
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~----~~~Lr~~R~~IGMIFQhF-nLLssr-TV~~ 102 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALS----EAELRQLRQKIGMIFQHF-NLLSSR-TVFE 102 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCC----hHHHHHHHhhccEEeccc-cccccc-hHHh
Confidence 3567899999999999999999999999898888888887665321 111111223467777654 444432 2222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCc-c-------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE-H-------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~-p-------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
++. +=+-+......+....+.++|+-.|+.+..+. | .-...|..+.+-.++ +
T Consensus 103 NvA------~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE--------a 168 (339)
T COG1135 103 NVA------FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE--------A 168 (339)
T ss_pred hhh------hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC--------c
Confidence 322 22222222344456678888988887653211 1 012233333333333 6
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+||++..--..+++.|.+.-
T Consensus 169 TSALDP~TT~sIL~LL~~In 188 (339)
T COG1135 169 TSALDPETTQSILELLKDIN 188 (339)
T ss_pred cccCChHHHHHHHHHHHHHH
Confidence 89999987777777776653
No 346
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.15 E-value=2.9e-06 Score=78.49 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=65.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCC--------ccceeee----------eeeeee-------e-----cc----c--
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLV--------PRNQLFA----------TLDVTT-------H-----EG----M-- 320 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~--------~~d~~ft----------Tld~t~-------~-----~~----~-- 320 (505)
|.+.++|+.|+|||||++.+.+..... .+...+. ...... + .. .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 578899999999999999988652110 0100000 011110 0 00 0
Q ss_pred --cCCcceEEEEeeeeeeecCCCCCcchh--hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 321 --LPNRLRILYVDTIGFISNIPTTLLEPF--KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 321 --~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
.....+.+++||+|+.. |..+.+.+ ...+......|.+++++|+.+..... ........++.. .-+
T Consensus 81 ~~~~~~~d~I~IEt~G~~~--p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~--~~~~~~~~Qi~~------ad~ 150 (158)
T cd03112 81 DAGKIAFDRIVIETTGLAD--PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHL--DQQTEAQSQIAF------ADR 150 (158)
T ss_pred HhccCCCCEEEEECCCcCC--HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHh--hccHHHHHHHHH------CCE
Confidence 01346789999999875 44444443 22344556689999999986533211 111112222222 236
Q ss_pred EEEeCCCC
Q psy50 397 VVGNKVDA 404 (505)
Q Consensus 397 lV~NKiDl 404 (505)
+|+||+|+
T Consensus 151 ivlnk~dl 158 (158)
T cd03112 151 ILLNKTDL 158 (158)
T ss_pred EEEecccC
Confidence 79999996
No 347
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.15 E-value=3.1e-06 Score=84.13 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=35.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
.+.+..++|+|++|||||||+++|+|...+..+.+...+.++
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 356789999999999999999999998767777777777654
No 348
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=3.3e-06 Score=83.22 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=90.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tl 351 (505)
...+..++|+|+||+|||||++.|.|...++.+.+...+.++.. ......+...+|++.|.|.+.+ |.. ..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~------~~~~~~~~~~vG~VfQnpd~q~--~~~tV~ 98 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS------EKSLLELRQKVGLVFQNPDDQL--FGPTVE 98 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc------hhhHHHhhcceEEEEECccccc--ccCcHH
Confidence 35678999999999999999999999987777777665554331 1112234567899999885432 222 23
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v 417 (505)
+++... .... .-...+..+.+.+.|..+++....+++. -++.-+.+.+-.++
T Consensus 99 ~evafg-----~~n~-g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE-------- 164 (235)
T COG1122 99 DEVAFG-----LENL-GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE-------- 164 (235)
T ss_pred HHHhhc-----hhhc-CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC--------
Confidence 332221 1111 1112234566778888887754322221 12223333333344
Q ss_pred EEeccCcccHHHHHHHHHHHHhh
Q psy50 418 LISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
|+|.++..|..++++.+.++-.+
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc
Confidence 79999999999999999887643
No 349
>KOG4423|consensus
Probab=98.11 E-value=2.8e-07 Score=85.81 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=101.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee--eeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL--DVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl--d~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
..++.++|+-++||++++.+.+..... ..+ -+|+ |.......+. .-..+.+||.+|..+ .. ..|.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs--~~y-RAtIgvdfalkVl~wdd~t~vRlqLwdIagQer------fg--~mtr 93 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFS--YHY-RATIGVDFALKVLQWDDKTIVRLQLWDIAGQER------FG--NMTR 93 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHH--HHH-HHHHhHHHHHHHhccChHHHHHHHHhcchhhhh------hc--ceEE
Confidence 457889999999999999998765421 111 1111 1111112222 235677999998432 11 1122
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHH-HhcCcccccCccEEEEEeCCCCCCCCCCC------------CCCCeEE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETL-QHLELEEKILEHVLVVGNKVDAVPPGERV------------TEEYDLL 418 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L-~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------~~~~~v~ 418 (505)
-.+++|.....|+|+++..+++....|.+-| ..+.++...+.|+++..||||.-...... .+...+.
T Consensus 94 Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwte 173 (229)
T KOG4423|consen 94 VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTE 173 (229)
T ss_pred EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceee
Confidence 2345688999999999988877665554433 33455666667899999999986432211 1557899
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+||+.+.+++|..+.+.+.+.-
T Consensus 174 ts~Kenkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 174 TSAKENKNIPEAQRELVEKILV 195 (229)
T ss_pred eccccccChhHHHHHHHHHHHh
Confidence 9999999999999999988753
No 350
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.11 E-value=2.5e-06 Score=86.02 Aligned_cols=62 Identities=29% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccc---eeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRN---QLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d---~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
+.+.+++|.+|+|||||+|+|.+.....+++ ....+..+|++...++-...=.++|||||.+
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~ 228 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS 228 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence 3488999999999999999999864333333 3333455555443322212235799999865
No 351
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.10 E-value=3.5e-06 Score=85.53 Aligned_cols=61 Identities=34% Similarity=0.363 Sum_probs=39.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
..++++|++|||||||+|+|++.....++.... .+..+|.......-.....++|||||.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 479999999999999999999986555554433 1222222221111111236899999864
No 352
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.10 E-value=9.3e-06 Score=79.28 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec--cccCCcceEEEEeeeeeeecCCCCCcchhhhh
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE--GMLPNRLRILYVDTIGFISNIPTTLLEPFKVT 350 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~--~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~t 350 (505)
-..+..++|+|++|||||||.++|.|...+..+++.+.+....... ....+.++++|-| |..-+..++..
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQD--------p~~SLnP~~tv 101 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD--------PYSSLNPRRTV 101 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecC--------CccccCcchhH
Confidence 4578899999999999999999999999889999998886543321 1112344555544 54444444333
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccccc--Ccc-------------EEEEEeCCCCCCCCCCCCCCC
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI--LEH-------------VLVVGNKVDAVPPGERVTEEY 415 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~--~~p-------------~IlV~NKiDl~~~~~~~~~~~ 415 (505)
.+.+.++-.+ +..... .+.+.++|+.+|++... ..| ...+.-+..++..++
T Consensus 102 ~~~l~Epl~~-------~~~~~~-~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE------ 167 (252)
T COG1124 102 GRILSEPLRP-------HGLSKS-QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE------ 167 (252)
T ss_pred HHHHhhhhcc-------CCccHH-HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC------
Confidence 3333333111 111122 23378888888875421 011 001112222222233
Q ss_pred eEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeE
Q psy50 416 DLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAV 467 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v 467 (505)
|+||++-..-.++++.+.+.-.+ +...-+.+..+-....++-+.-.|
T Consensus 168 --ptSaLD~siQa~IlnlL~~l~~~---~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 168 --PTSALDVSVQAQILNLLLELKKE---RGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred --chhhhcHHHHHHHHHHHHHHHHh---cCceEEEEeCcHHHHHHHhhheee
Confidence 79999988777777777665432 223445555444444444433333
No 353
>KOG3886|consensus
Probab=98.09 E-value=2.7e-06 Score=82.04 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=83.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hH-HHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TL-EDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tl-e~i 354 (505)
.+|.++|.+|+||||+=..+........-..+.+|+|++......-++.-+.+||..|. ...++.+.+ .. .-+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq-----e~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ-----EEFMENYLSSQEDNIF 79 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc-----HHHHHHHHhhcchhhh
Confidence 47999999999999987776655434334566778887665555566788899999882 122333321 11 124
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE 409 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~ 409 (505)
...+++++|+|++..+...+.....+.|+.+- .......+.+.+.|+|++..+.
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll-~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALL-QNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHH-hcCCcceEEEEEeechhcccch
Confidence 56899999999988765554444444444431 1222236889999999987765
No 354
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.08 E-value=7e-06 Score=81.45 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=57.9
Q ss_pred HHHhhceeEEEeeCCCCC-hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPD-YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~-~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~ 422 (505)
.+.++|.+++|+|+++|. +......++..+... ..|+++|+||+||....... ...+++++||+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~------~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAk 106 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ------NIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSK 106 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecC
Confidence 366799999999999877 555555555544432 24899999999997533211 13578999999
Q ss_pred CcccHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQD 436 (505)
Q Consensus 423 ~g~gi~eL~~~I~~ 436 (505)
+|.|+++|++.+.+
T Consensus 107 tg~gi~eLf~~l~~ 120 (245)
T TIGR00157 107 NQDGLKELIEALQN 120 (245)
T ss_pred CchhHHHHHhhhcC
Confidence 99999999998863
No 355
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.08 E-value=2.2e-06 Score=87.33 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++++|++||||||||+.|+|...++.+.+...+.++.... ..+.-..|++.+.|. +.+.+. ..+.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~--------~~~~~~igy~~~~~~-~~~~lT-~~e~ 98 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEP--------AKVRRRIGYVPQEPS-LYPELT-VREN 98 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCH--------HHHHhheEEEccCCC-CCcccc-HHHH
Confidence 467799999999999999999999998777777777766553211 111123667666552 333331 1222
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- -++ ........+.+.++++.+++....+++ ...++++.++.-.++ |+
T Consensus 99 l~~~~-~l~-----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE--------Pt 164 (293)
T COG1131 99 LEFFA-RLY-----GLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE--------PT 164 (293)
T ss_pred HHHHH-HHh-----CCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC--------CC
Confidence 11110 011 111122244567777777775411111 123344555544455 79
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
|.++..+..++.+.|.++..+
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 165 SGLDPESRREIWELLRELAKE 185 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998754
No 356
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.07 E-value=1e-05 Score=76.64 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=57.9
Q ss_pred hhhhHHH-HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------------C-
Q psy50 347 FKVTLED-AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------------T- 412 (505)
Q Consensus 347 f~~tle~-i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------~- 412 (505)
|+.++.. +..+|++++|+|++++.... ...+ ... . ..+|+++|+||+|+....... .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~-~~~l---~~~--~---~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSL-IPRL---RLF--G---GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCcc-chhH---HHh--c---CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhh
Confidence 3444444 47799999999998865322 1111 111 1 125999999999997543210 0
Q ss_pred ----CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 ----EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 ----~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
..+++++||++|.|+++|++.|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 136899999999999999999999875
No 357
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.1e-05 Score=79.91 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||+++++|.-.+..+.+.+........ . =...+|+++|.. ++...|=.|..+
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-------~---~~~~IgYVPQ~~-~~d~~fP~tV~d 96 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-------R---KRLRIGYVPQKS-SVDRSFPITVKD 96 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-------c---cCCeEEEcCccc-ccCCCCCcCHHH
Confidence 46689999999999999999999997656666665544322110 0 023577776543 333444334444
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...-..-..- .-........+.+.+.|+..|+.+..++++ -..+++.|+.-.++ |+
T Consensus 97 ~V~~g~~~~~g-~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE--------P~ 167 (254)
T COG1121 97 VVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE--------PF 167 (254)
T ss_pred HHHccCccccc-ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC--------Cc
Confidence 32221111000 000112223567788888888765444442 24567777777676 78
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
++.+-.+-.++.+.|.++-.+
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHC
Confidence 889998988988888887644
No 358
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.2e-05 Score=78.33 Aligned_cols=151 Identities=21% Similarity=0.171 Sum_probs=92.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC--Ccccee-------------eeeeeeeeeccccCCcceEEEEeeeeeeecC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQL-------------FATLDVTTHEGMLPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~-------------ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l 339 (505)
....|+.+|+-+.|||||..+|+..... ...... ..|+++. +..+-.....+-.+|.||..
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITInta-hveyet~~rhyahVDcPGHa--- 86 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTA-HVEYETANRHYAHVDCPGHA--- 86 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccc-eeEEecCCceEEeccCCChH---
Confidence 4567899999999999999999864210 000111 1122211 11111245678899999943
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC-------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT------- 412 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~------- 412 (505)
+.+..+ +-...++|..|+|+.+++..... .....-+.++.|++ .+++++||+|++++.+...
T Consensus 87 --DYvKNM---ItgAaqmDgAILVVsA~dGpmPq-TrEHiLlarqvGvp-----~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 87 --DYVKNM---ITGAAQMDGAILVVAATDGPMPQ-TREHILLARQVGVP-----YIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred --HHHHHH---hhhHHhcCccEEEEEcCCCCCCc-chhhhhhhhhcCCc-----EEEEEEecccccCcHHHHHHHHHHHH
Confidence 333332 33455689999999999876543 33333455677763 4788899999998654311
Q ss_pred -----------CCCeEEEeccCcc--------cHHHHHHHHHHHHhh
Q psy50 413 -----------EEYDLLISATRGT--------GLAQLKEKVQDMILK 440 (505)
Q Consensus 413 -----------~~~~v~iSA~~g~--------gi~eL~~~I~~~l~~ 440 (505)
..|++.-||+.-- .|.+|++++.++++.
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 3467777776532 357777777777643
No 359
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.03 E-value=5.6e-06 Score=79.45 Aligned_cols=118 Identities=22% Similarity=0.224 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec------------------cc----------------cCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE------------------GM----------------LPN 323 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~------------------~~----------------~~~ 323 (505)
.+++||+|||||||.+-.|............+.+.|+.+-. .. ..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 68999999999999988886432111222333333321100 00 012
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++++||+|.-...+ ++.+.+...++ ....+-+++|+|++... +....+....+.+++ .=++++|.|
T Consensus 83 ~~D~vlIDT~Gr~~~d~-~~~~el~~~~~-~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~-------~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDE-ELLEELKKLLE-ALNPDEVHLVLSATMGQ--EDLEQALAFYEAFGI-------DGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTHH-HHHHHHHHHHH-HHSSSEEEEEEEGGGGG--HHHHHHHHHHHHSST-------CEEEEESTT
T ss_pred CCCEEEEecCCcchhhH-HHHHHHHHHhh-hcCCccceEEEecccCh--HHHHHHHHHhhcccC-------ceEEEEeec
Confidence 36799999999543221 23344443333 33578899999987653 233344555554543 347799999
Q ss_pred CCC
Q psy50 404 AVP 406 (505)
Q Consensus 404 l~~ 406 (505)
-..
T Consensus 152 et~ 154 (196)
T PF00448_consen 152 ETA 154 (196)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 360
>KOG1954|consensus
Probab=98.00 E-value=3.2e-05 Score=79.21 Aligned_cols=130 Identities=29% Similarity=0.287 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--------------------ccceeeeeeeee----eec-----------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV--------------------PRNQLFATLDVT----THE----------- 318 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~--------------------~~d~~ftTld~t----~~~----------- 318 (505)
...|.|.++|.-..||||++|.|+..+.+. .+.++.+++-.. .+.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 355899999999999999999999875321 111111111110 000
Q ss_pred ---cccCC--cceEEEEeeeeeeecCCCCCcch--hhhhHHH-HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccc
Q psy50 319 ---GMLPN--RLRILYVDTIGFISNIPTTLLEP--FKVTLED-AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK 390 (505)
Q Consensus 319 ---~~~~~--~~~v~l~DT~Gfi~~lp~~lie~--f~~tle~-i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~ 390 (505)
..+++ -..+.++||||+.+......... |...++- +..+|.|++++|+..-+..+..+.+...|+.- +
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E- 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E- 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c-
Confidence 00011 13578999999987433222222 3333333 45799999999987655444455555555532 2
Q ss_pred cCccEEEEEeCCCCCCCCC
Q psy50 391 ILEHVLVVGNKVDAVPPGE 409 (505)
Q Consensus 391 ~~~p~IlV~NKiDl~~~~~ 409 (505)
-.+-+|+||.|.+...+
T Consensus 212 --dkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDTQQ 228 (532)
T ss_pred --ceeEEEeccccccCHHH
Confidence 26889999999887654
No 361
>KOG0466|consensus
Probab=97.96 E-value=2.4e-06 Score=85.24 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=95.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee-------eec------------------------cccCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT-------THE------------------------GMLPN 323 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t-------~~~------------------------~~~~~ 323 (505)
....|+-+|+--.||||+.++++|-..+.-.+.+...+.+. .+. ...++
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 34678899999999999999999864221111111000000 000 00000
Q ss_pred -------cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 324 -------RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 324 -------~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
-..+.|+|.|| |+..- ...+....-.|..++++....++...|....+...+-+.+ +.++
T Consensus 117 ~~~~~klvRHVSfVDCPG------HDiLM--aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khii 183 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPG------HDILM--ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHII 183 (466)
T ss_pred CCCceEEEEEEEeccCCc------hHHHH--HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEE
Confidence 13466788888 23221 1224444556777777777776655555544544554443 4689
Q ss_pred EEEeCCCCCCCCCCC---------------CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 397 VVGNKVDAVPPGERV---------------TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 397 lV~NKiDl~~~~~~~---------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
++-||+||+....-. ...|++|+||.-+.|++-+.++|.+.++.
T Consensus 184 ilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 184 ILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 999999998765321 15689999999999999999999998863
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.94 E-value=1.1e-05 Score=81.47 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=63.3
Q ss_pred CcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCC
Q psy50 343 LLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEE 414 (505)
Q Consensus 343 lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~ 414 (505)
+...++...+.+..||++++|+|+..|.... ...+.+.+. .+|+++|+||+|+.+..... ...
T Consensus 8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~-~~~i~~~l~--------~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~ 78 (276)
T TIGR03596 8 MAKARREIKEKLKLVDVVIEVLDARIPLSSR-NPMIDEIRG--------NKPRLIVLNKADLADPAVTKQWLKYFEEKGI 78 (276)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCC-ChhHHHHHC--------CCCEEEEEEccccCCHHHHHHHHHHHHHcCC
Confidence 3344455667788899999999998775433 222333331 25999999999997542111 123
Q ss_pred CeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+++++||+++.|+++|++.|.+.+.+
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 68999999999999999999988764
No 363
>KOG0468|consensus
Probab=97.93 E-value=2.3e-05 Score=85.12 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCc-----cceeeeeeee-------eeec----ccc----CCcceEEEEeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVP-----RNQLFATLDV-------TTHE----GML----PNRLRILYVDTIGFI 336 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~-----~d~~ftTld~-------t~~~----~~~----~~~~~v~l~DT~Gfi 336 (505)
..|+++|+-.+|||+|+.+|.....+.. .+.-+++.-. +++. ..+ ....-+.++||||.+
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 4799999999999999999987653321 1111221100 0000 000 123457899999955
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
++... +...++.+|++++|+|+.+.-.......+...++ .. .|+++|+||+|.+.
T Consensus 209 -----nF~DE---~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~---~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 209 -----NFSDE---TTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NR---LPIVVVINKVDRLI 263 (971)
T ss_pred -----cchHH---HHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----cc---CcEEEEEehhHHHH
Confidence 22222 3445667999999999988765443222222222 22 49999999999753
No 364
>KOG1707|consensus
Probab=97.93 E-value=0.00013 Score=78.83 Aligned_cols=149 Identities=23% Similarity=0.205 Sum_probs=87.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee-eeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT-LDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT-ld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
.++.....++|+.|+|||.||+++.|..... ....++ -....+.+...+.....+.--+|-.. .+... ..
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~---~~~l~----~k 492 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGEDD---QDFLT----SK 492 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCccc---ccccc----Cc
Confidence 4567788999999999999999999975322 221211 11222222222222222222233111 11111 11
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC-----------CCCeEEEe
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT-----------EEYDLLIS 420 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~-----------~~~~v~iS 420 (505)
+ ..+|++.+++|.|+|...+....+.+.-... ...|++.|..|+|+-....... -++.+.+|
T Consensus 493 e--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-----~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S 565 (625)
T KOG1707|consen 493 E--AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-----YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHIS 565 (625)
T ss_pred c--ceeeeEEEecccCCchHHHHHHHHHHHhhhc-----cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeec
Confidence 2 4599999999999988766544444332222 2359999999999865442211 34567788
Q ss_pred ccCcccHHHHHHHHHHHH
Q psy50 421 ATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l 438 (505)
.+.. +=.+++..|..+.
T Consensus 566 ~~~~-~s~~lf~kL~~~A 582 (625)
T KOG1707|consen 566 SKTL-SSNELFIKLATMA 582 (625)
T ss_pred cCCC-CCchHHHHHHHhh
Confidence 8852 2278888887775
No 365
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.92 E-value=1.3e-05 Score=73.65 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=51.8
Q ss_pred ceeEEEeeCCCCChHHHHHHHH-HHHHhcCcccccCccEEEEEeCCCCCCCCCC------C---CCCCeEEEeccCcccH
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVPPGER------V---TEEYDLLISATRGTGL 427 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~---~~~~~v~iSA~~g~gi 427 (505)
|++++|+|+++|.... ...+. ..+... .+|+++|+||+|+...... . ....++++||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~-~~~i~~~~~~~~------~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTR-SPDIERVLIKEK------GKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCcccc-CHHHHHHHHhcC------CCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcCh
Confidence 7899999998876443 22222 222222 2599999999999754311 0 1345799999999999
Q ss_pred HHHHHHHHHHH
Q psy50 428 AQLKEKVQDMI 438 (505)
Q Consensus 428 ~eL~~~I~~~l 438 (505)
++|++.|.+.+
T Consensus 74 ~~L~~~i~~~~ 84 (155)
T cd01849 74 EKKESAFTKQT 84 (155)
T ss_pred hhHHHHHHHHh
Confidence 99999997653
No 366
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.90 E-value=1.9e-05 Score=81.23 Aligned_cols=148 Identities=22% Similarity=0.186 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC--------------------Cccceeeeeeeeeee---cccc---------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL--------------------VPRNQLFATLDVTTH---EGML--------- 321 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--------------------~~~d~~ftTld~t~~---~~~~--------- 321 (505)
+....|+..|+-++|||||.-+|+-...- .+.+..|.-.-+.-. ....
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 45567899999999999999888633200 011222211100000 0000
Q ss_pred ---CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH--HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 322 ---PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA--MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 322 ---~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i--~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
..+.-+.|+||+|.- | .++.|+..+ ...|..++++-+.+..+.- .+..+.++-.+++ |+|
T Consensus 195 vv~~aDklVsfVDtvGHE---p-----wLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~~l------Pvi 259 (527)
T COG5258 195 VVKRADKLVSFVDTVGHE---P-----WLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAMEL------PVI 259 (527)
T ss_pred hhhhcccEEEEEecCCcc---H-----HHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhhcC------CEE
Confidence 113457899999932 1 235566664 3478999999988876543 2333444444443 999
Q ss_pred EEEeCCCCCCCCCCC----------------C---------------------CCCeEEEeccCcccHHHHHHHHHH
Q psy50 397 VVGNKVDAVPPGERV----------------T---------------------EEYDLLISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 397 lV~NKiDl~~~~~~~----------------~---------------------~~~~v~iSA~~g~gi~eL~~~I~~ 436 (505)
+|++|+|+.+.+... + -.|+|.+|+.+|+|++-|.+.+..
T Consensus 260 VvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 260 VVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred EEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 999999998765420 0 247899999999999877666544
No 367
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.89 E-value=0.00014 Score=74.88 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc---ce----eeeeeeeeeecccc-CC--cceEEEEeeeeeeecCCCC-C
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPR---NQ----LFATLDVTTHEGML-PN--RLRILYVDTIGFISNIPTT-L 343 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~---d~----~ftTld~t~~~~~~-~~--~~~v~l~DT~Gfi~~lp~~-l 343 (505)
-...|.++|.+|.||||++|.|++....... +. .-.|+.+......+ .+ ...+.++|||||-+....+ -
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 3467899999999999999999987322110 11 11233332222222 22 3568899999997643321 1
Q ss_pred cch--------hhhhHHH---H--------HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 344 LEP--------FKVTLED---A--------MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 344 ie~--------f~~tle~---i--------~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
.+. |...+.+ + ...+++|+.+-.+.......+- ..++++.- ...+|-|+-|+|.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI---e~Mk~ls~----~vNlIPVI~KaD~ 174 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI---EAMKRLSK----RVNLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH---HHHHHHhc----ccCeeeeeecccc
Confidence 111 1111111 0 1247888888765433222222 22333321 1368889999998
Q ss_pred CCCCCC
Q psy50 405 VPPGER 410 (505)
Q Consensus 405 ~~~~~~ 410 (505)
...++.
T Consensus 175 lT~~El 180 (373)
T COG5019 175 LTDDEL 180 (373)
T ss_pred CCHHHH
Confidence 877663
No 368
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.89 E-value=1.4e-05 Score=72.13 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=52.5
Q ss_pred hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CCCCeEEE
Q psy50 348 KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TEEYDLLI 419 (505)
Q Consensus 348 ~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~~~~v~i 419 (505)
+..++.+..+|++++|+|+++|.... ...+.+.+.... ..+|+++|+||+|+....... ....++++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~-~~~l~~~l~~~~----~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~i 77 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFR-PPDLERYVKEVD----PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccC-CHHHHHHHHhcc----CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEE
Confidence 45677788899999999999876533 345566666542 125999999999997543211 13568999
Q ss_pred eccCccc
Q psy50 420 SATRGTG 426 (505)
Q Consensus 420 SA~~g~g 426 (505)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998764
No 369
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.88 E-value=3.8e-06 Score=81.25 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 67 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDL 67 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeh
Confidence 57789999999999999999999998767777776665543
No 370
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.87 E-value=3.3e-05 Score=72.98 Aligned_cols=146 Identities=17% Similarity=0.183 Sum_probs=88.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
....+..+.++|++||||||||+.|.+...++.+.+.+...|++.-.. ...++ +---+|++.|.. .+... ++++
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~---~~iP~-LRR~IGvVFQD~-rLL~~-~tvy 97 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG---REIPF-LRRQIGVVFQDF-RLLPD-RTVY 97 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc---cccch-hhheeeeEeeec-ccccc-chHh
Confidence 346778999999999999999999999998999999999888764221 11111 223456666543 33333 2344
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccccc-CccE-------------EEEEeCCCCCCCCCCCCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI-LEHV-------------LVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~-~~p~-------------IlV~NKiDl~~~~~~~~~~~~v 417 (505)
+.+.. .+-|+-. ...+..+.+...|+..|+.+.. .-|. -.++|+.+++-.++
T Consensus 98 eNVA~---pL~v~G~---~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE-------- 163 (223)
T COG2884 98 ENVAL---PLRVIGK---PPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE-------- 163 (223)
T ss_pred hhhhh---hhhccCC---CHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC--------
Confidence 44332 2333322 2233456788888888775421 1121 14567777666666
Q ss_pred EEeccCcccHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~ 437 (505)
|+--++...-.++++.+.+.
T Consensus 164 PTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 164 PTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred CCCCCChHHHHHHHHHHHHH
Confidence 45556665555666555543
No 371
>KOG3905|consensus
Probab=97.87 E-value=0.0001 Score=74.45 Aligned_cols=186 Identities=22% Similarity=0.248 Sum_probs=102.8
Q ss_pred hhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCcccee-eeeeeeeeeccccCC--cceEEEEeeeeeeecCCCCCcch
Q psy50 270 KKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-FATLDVTTHEGMLPN--RLRILYVDTIGFISNIPTTLLEP 346 (505)
Q Consensus 270 ~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-ftTld~t~~~~~~~~--~~~v~l~DT~Gfi~~lp~~lie~ 346 (505)
..+.+.+..|.++|.+++||||||..|-|.+.+..+.-+ +.-++ ++.-.-.+ .+.+.+.|---+.. ++. .
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~--V~de~RDd~tr~~VWiLDGd~~h~----~LL-k 118 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLH--VHDEDRDDLTRCNVWILDGDLYHK----GLL-K 118 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEe--cccccchhhhhcceEEecCchhhh----hHH-h
Confidence 345677889999999999999999999998633322211 11111 11100011 23344444211111 111 1
Q ss_pred hhhhHHHHHhh-ceeEEEeeCCCCC-hHHHHHHHHHHHHh----cCccc-------------------------------
Q psy50 347 FKVTLEDAMLA-DIIIHVVDVSNPD-YLQQKQHVDETLQH----LELEE------------------------------- 389 (505)
Q Consensus 347 f~~tle~i~~A-DliL~VvD~s~~~-~~~~~~~v~~~L~~----lg~~~------------------------------- 389 (505)
| ++.+...+ -++|+++|+++|. ..++.+.|..++.+ +.++.
T Consensus 119 ~--al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r 196 (473)
T KOG3905|consen 119 F--ALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRR 196 (473)
T ss_pred h--cccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccc
Confidence 1 11111112 3678889999983 33444444444432 11100
Q ss_pred -----------------------ccCccEEEEEeCCCCCCCCCC---CC------------------CCCeEEEeccCcc
Q psy50 390 -----------------------KILEHVLVVGNKVDAVPPGER---VT------------------EEYDLLISATRGT 425 (505)
Q Consensus 390 -----------------------~~~~p~IlV~NKiDl~~~~~~---~~------------------~~~~v~iSA~~g~ 425 (505)
....|+++|.+|||.+.--+. +. ....|++|++...
T Consensus 197 ~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~K 276 (473)
T KOG3905|consen 197 TTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETK 276 (473)
T ss_pred cccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccccc
Confidence 123569999999998542211 10 4568999999999
Q ss_pred cHHHHHHHHHHHHhhhc------CcceEEEEecCC---CcccccccCC
Q psy50 426 GLAQLKEKVQDMILKAT------GRKNITMRVRSG---GSEYQWLMKH 464 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~~------~~~~~~l~~p~~---~~~~~~l~~~ 464 (505)
|++-|..+|...+.... -.+.-.+.+|.+ .+.++.||.+
T Consensus 277 NidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~Il~En 324 (473)
T KOG3905|consen 277 NIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDILHEN 324 (473)
T ss_pred chHHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchhhhhc
Confidence 99999999998875421 122334667752 3455666544
No 372
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=7.3e-06 Score=79.52 Aligned_cols=142 Identities=17% Similarity=0.128 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+...++... .. .+...+|++.+.+ .+...+ +..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~----~~~~~i~~~~q~~-~~~~~~-tv~~~ 93 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE----PR----EVRRRIGIVFQDL-SVDDEL-TGWEN 93 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC----hH----HHhhcEEEecCCc-cccccC-cHHHH
Confidence 46789999999999999999999998766667666554432210 00 0112355555543 222221 12222
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- -.+ . .......+.+.++++.+++....+.+ ...++.+.+++-.++ |+
T Consensus 94 l~~~~-~~~--~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE--------Pt 159 (220)
T cd03265 94 LYIHA-RLY--G---VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE--------PT 159 (220)
T ss_pred HHHHH-HHc--C---CCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------Cc
Confidence 22110 000 1 11112233456677777764321111 112333444444444 78
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
++++......+.+.|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=97.87 E-value=2.4e-05 Score=81.67 Aligned_cols=79 Identities=25% Similarity=0.271 Sum_probs=55.8
Q ss_pred HHHhhceeEEEeeCCCCChHH-HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CCCCCeEEEeccC
Q psy50 353 DAMLADIIIHVVDVSNPDYLQ-QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VTEEYDLLISATR 423 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~-~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~~v~iSA~~ 423 (505)
.+.++|.+++|+|+.++.... ....++......+ .|+++|+||+||+..... ....+++++||++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~------ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTG------LEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 467899999999998775322 2233333332222 489999999999754321 0134689999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
+.|+++|++.|...
T Consensus 160 g~GI~eL~~~L~~k 173 (352)
T PRK12289 160 GIGLEALLEQLRNK 173 (352)
T ss_pred CCCHHHHhhhhccc
Confidence 99999999998654
No 374
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.86 E-value=7.7e-06 Score=83.54 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=77.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... . +....|++.+.+ .+...+ +..+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~----~~~~i~~~~q~~-~~~~~~-tv~e 85 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR----K----VRRSIGIVPQYA-SVDEDL-TGRE 85 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHH----H----HHhhcEEecCCC-CCCCCC-cHHH
Confidence 35678999999999999999999999876777777766654321100 0 011245555433 222221 1122
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+.... ..... ......+.+.++++.+++....+.+ ...++++.+++-.++ |
T Consensus 86 ~l~~~~---~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE--------P 151 (302)
T TIGR01188 86 NLEMMG---RLYGL---PKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE--------P 151 (302)
T ss_pred HHHHHH---HHcCC---CHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------C
Confidence 222110 00011 1112233456677777664321111 112223333333344 6
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 152 t~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHH
Confidence 88999888888888887764
No 375
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=1.4e-05 Score=77.19 Aligned_cols=142 Identities=19% Similarity=0.209 Sum_probs=76.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++... +. ...-.|++.+.+. +...+ +..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----~~-----~~~~i~~v~q~~~-~~~~~-tv~~ 91 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV----PP-----ERRNIGMVFQDYA-LFPHL-TVAE 91 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC----ch-----hhccEEEEcCchh-hccCC-cHHH
Confidence 356789999999999999999999998766677776655543210 00 0122455554432 22111 1122
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+..+- ...........+.+.+.++.+++....+.+ ...++++.+++-.++ |
T Consensus 92 ~l~~~~------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE--------P 157 (213)
T cd03259 92 NIAFGL------KLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE--------P 157 (213)
T ss_pred HHHhHH------HHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 221110 000011111223455666666654321111 112223334333344 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+++++......+.+.|.+...
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 158 LSALDAKLREELREELKELQR 178 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999999987653
No 376
>KOG1673|consensus
Probab=97.84 E-value=3.8e-05 Score=69.80 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=97.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+-.|||||+-...+...- ..-....++...-+.... .....+.+||.-|-.+- .+.+.- ..
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~--~n~lPi------ac 90 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF--INMLPI------AC 90 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhh--hccCce------ee
Confidence 357999999999999999988886521 110011111111111111 23456789999984321 111111 12
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-C--------------CCCCeEEE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-V--------------TEEYDLLI 419 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-~--------------~~~~~v~i 419 (505)
..+-.+++++|.+.+++......|....+.++-.. .| |+|++|-|+.-.-.. . -..+.+++
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktA---iP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~ 166 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTA---IP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFC 166 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccCCcc---ce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 34778999999999988776777776666554322 23 789999997432211 0 05678999
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
|+.+..|+..++..+...++.
T Consensus 167 Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 167 STSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred eccccccHHHHHHHHHHHHhC
Confidence 999999999999999888754
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=3.2e-05 Score=81.11 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee------------------eccc-----------cC--C
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT------------------HEGM-----------LP--N 323 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~------------------~~~~-----------~~--~ 323 (505)
+...|+|+|++||||||++..|+...........+.+.|+.. .... .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999999975321000111122222110 0000 01 1
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++|+||+|-.... ..+++.+...+.. ...|.+++|+|++-.. .....+.+.++.+++ -=++++|.|
T Consensus 320 ~~DvVLIDTaGRs~kd-~~lm~EL~~~lk~-~~PdevlLVLsATtk~--~d~~~i~~~F~~~~i-------dglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRA-SETVEEMIETMGQ-VEPDYICLTLSASMKS--KDMIEIITNFKDIHI-------DGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcC-HHHHHHHHHHHhh-cCCCeEEEEECCccCh--HHHHHHHHHhcCCCC-------CEEEEEccc
Confidence 3589999999954321 1233333333332 2357788889876432 122334444444443 458899999
Q ss_pred CCC
Q psy50 404 AVP 406 (505)
Q Consensus 404 l~~ 406 (505)
-..
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 544
No 378
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=1.7e-05 Score=78.96 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=77.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++.. .. ...||+.+.+ .+.... +..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-----~~-------~~~~~v~q~~-~~~~~~-tv~e 89 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-----PG-------AERGVVFQNE-GLLPWR-NVQD 89 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC-----CC-------CcEEEEeCCC-ccCCCC-cHHH
Confidence 35678999999999999999999999876777777665554321 00 1246665543 222211 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...- ..... ........+.++++.+++....+.+ ...++.+.+++-.++ |
T Consensus 90 ~l~~~~---~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE--------P 155 (255)
T PRK11248 90 NVAFGL---QLAGV---EKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE--------P 155 (255)
T ss_pred HHHhHH---HHcCC---CHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------C
Confidence 221110 00011 1112233456677777764321111 112223333333344 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 156 t~~LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLW 175 (255)
T ss_pred CccCCHHHHHHHHHHHHHHH
Confidence 89999999999999988764
No 379
>KOG2484|consensus
Probab=97.83 E-value=1.1e-05 Score=83.37 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=48.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.+...+|+|||+||+||||++|+|.......+++.+.-|... +.+. -+..+.|+|.||++.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~sm--qeV~--Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSM--QEVK--LDKKIRLLDSPGIVP 309 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhh--hhee--ccCCceeccCCceee
Confidence 456789999999999999999999998877788887766543 2222 356788999999986
No 380
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=1.2e-05 Score=77.97 Aligned_cols=139 Identities=20% Similarity=0.192 Sum_probs=75.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++.. .....|++.+.+ .+...+ +..+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------------~~~~i~~v~q~~-~~~~~~-tv~e 92 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------------PGPDRGYVFQQD-ALLPWL-TVLD 92 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------------ccCcEEEEeccc-ccccCC-CHHH
Confidence 35678999999999999999999999876666766655543321 012345555443 122211 1122
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...-. ..........+.+.++++.+++....+.+ ...++.+.+++-.++ |
T Consensus 93 ~l~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE--------P 158 (220)
T cd03293 93 NVALGLE------LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE--------P 158 (220)
T ss_pred HHHHHHH------HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC--------C
Confidence 2211100 00011112234456667776664321111 011122223322233 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++..+...+.+.|.+...
T Consensus 159 t~~LD~~~~~~~~~~l~~~~~ 179 (220)
T cd03293 159 FSALDALTREQLQEELLDIWR 179 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999987653
No 381
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.81 E-value=8.5e-06 Score=78.40 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
-..+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD 64 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 35678999999999999999999999876667776665544
No 382
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.81 E-value=6.6e-06 Score=79.59 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=77.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+...++..... .+...+|++.+.+ .+...+ +..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--------~~~~~i~~~~q~~-~~~~~~-tv~e 97 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA--------EARRRLGFVSDST-GLYDRL-TARE 97 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHH--------HHHhhEEEecCCc-ccCcCC-CHHH
Confidence 35678999999999999999999999876777777666554321000 0112355555544 222221 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+..... . .. .........+.++++.+++....+.+ ...++.+.|++-.++ |
T Consensus 98 ~l~~~~~-~--~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE--------P 163 (218)
T cd03266 98 NLEYFAG-L--YG---LKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE--------P 163 (218)
T ss_pred HHHHHHH-H--cC---CCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 2221100 0 01 11112233455666766664321111 111223333333344 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+++++......+.+.|.+..
T Consensus 164 t~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 164 TTGLDVMATRALREFIRQLR 183 (218)
T ss_pred CcCCCHHHHHHHHHHHHHHH
Confidence 89999999999999988764
No 383
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=1.4e-05 Score=78.29 Aligned_cols=148 Identities=11% Similarity=0.122 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ... ..+...+|++.+.+ .+...+ +..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~-~~~~~~i~~v~q~~-~~~~~~-tv~~ 96 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSE---AEL-YRLRRRMGMLFQSG-ALFDSL-TVFE 96 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccCh---hhH-HHHhcceEEEccCc-ccCCCC-cHHH
Confidence 35778999999999999999999999876777777665544321100 000 00112355655543 222211 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+... ... . ...........+.++++.+++....+.+ ...++++.+++-.++ |
T Consensus 97 ~l~~~---~~~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE--------P 163 (235)
T cd03261 97 NVAFP---LRE-H-TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE--------P 163 (235)
T ss_pred HHHHH---Hhh-c-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC--------C
Confidence 22111 000 0 0011112233456667777664321111 112223333333344 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++..+...+.+.|.+...
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKK 184 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999999988653
No 384
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.81 E-value=7.3e-06 Score=85.28 Aligned_cols=147 Identities=19% Similarity=0.144 Sum_probs=82.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... +.... ...-..|++.+.+ .+.... +..+
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~---~~~l~-~~r~~Ig~v~Q~~-~l~~~~-tv~e 101 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS---NSELT-KARRQIGMIFQHF-NLLSSR-TVFG 101 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC---HHHHH-HHhcCEEEEECCc-cccccC-cHHH
Confidence 3567899999999999999999999998777888877766543210 00000 0011356666544 333221 2233
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...-. .......+..+.+.++++.+|+.+..+.+ ...+++..+++-.++ |
T Consensus 102 ni~~~~~------~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE--------P 167 (343)
T TIGR02314 102 NVALPLE------LDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE--------A 167 (343)
T ss_pred HHHHHHH------HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC--------C
Confidence 3322100 01111122234566777777764321111 011222333333333 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++...-..+++.|.+...
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~ 188 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINR 188 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999998888754
No 385
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=2.2e-05 Score=82.15 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++.... +.. --.|++.+.+ .+...+ +..+.
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~------r~ig~v~Q~~-~lfp~~-tv~eN 96 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE---PAD------RDIAMVFQNY-ALYPHM-SVREN 96 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHH------CCEEEEeCCc-cccCCC-CHHHH
Confidence 467799999999999999999999998788888877776543210 111 1356665544 233222 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+... .........+....+.++++.+++....+++ ...++.+.+++-.++ |+
T Consensus 97 i~~~------~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE--------P~ 162 (356)
T PRK11650 97 MAYG------LKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE--------PL 162 (356)
T ss_pred HHhH------HhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------Cc
Confidence 3221 0111111122234566777777764321111 112223333333333 78
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++...-+.+++.|.+...
T Consensus 163 s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999888888888887654
No 386
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.79 E-value=3e-05 Score=73.51 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=34.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL 56 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence 356789999999999999999999998767777776665543
No 387
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.79 E-value=1.1e-05 Score=77.96 Aligned_cols=41 Identities=29% Similarity=0.269 Sum_probs=34.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~ 67 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEe
Confidence 35778999999999999999999999976667777665544
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.78 E-value=4.9e-05 Score=80.97 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=42.3
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHh-cCcccccCccEEEEEeCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQH-LELEEKILEHVLVVGNKV 402 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~-lg~~~~~~~p~IlV~NKi 402 (505)
+..++++||+|..... ..+.+.+.. +......|.+++|+|++-.... ....+.+++ ++ +.-+|+||.
T Consensus 182 ~~DvViIDTaGr~~~d-~~lm~El~~-i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~~-------~~g~IlTKl 249 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE-DSLFEEMLQ-VAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSVD-------VGSVIITKL 249 (429)
T ss_pred CCCEEEEECCCCCcch-HHHHHHHHH-HhhhcCCcEEEEEeccccChhH---HHHHHHHHhccC-------CcEEEEECc
Confidence 5789999999954321 133444332 2234467899999998754322 112233332 22 567899999
Q ss_pred CCCC
Q psy50 403 DAVP 406 (505)
Q Consensus 403 Dl~~ 406 (505)
|-..
T Consensus 250 D~~a 253 (429)
T TIGR01425 250 DGHA 253 (429)
T ss_pred cCCC
Confidence 9754
No 389
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.78 E-value=8.3e-06 Score=78.67 Aligned_cols=42 Identities=29% Similarity=0.192 Sum_probs=34.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
-..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 66 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 356789999999999999999999998766677766655543
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=6.5e-05 Score=78.77 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ccceeeeeeeeee------------------ecccc----------CC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV--PRNQLFATLDVTT------------------HEGML----------PN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~--~~d~~ftTld~t~------------------~~~~~----------~~ 323 (505)
..+..++|+|+|||||||++..|....... .....+.|.|... ..... ..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 456789999999999999999998642111 1123333333321 00000 13
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-Ccccc-cCccEEEEEeC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEK-ILEHVLVVGNK 401 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~-~~~p~IlV~NK 401 (505)
+..++++||+|+..... .+.+.+ ..+.....++-.++|++++.... ....+....... +.+.. .....=+|++|
T Consensus 215 ~~DlVLIDTaG~~~~d~-~l~e~L-a~L~~~~~~~~~lLVLsAts~~~--~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDR-TVSDQI-AMLHGADTPVQRLLLLNATSHGD--TLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CCCEEEEcCCCCCcccH-HHHHHH-HHHhccCCCCeEEEEecCccChH--HHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 56889999999653111 111221 11222223445688999876432 222233333322 11100 00124578899
Q ss_pred CCCCC
Q psy50 402 VDAVP 406 (505)
Q Consensus 402 iDl~~ 406 (505)
.|-..
T Consensus 291 lDEt~ 295 (374)
T PRK14722 291 LDEAS 295 (374)
T ss_pred cccCC
Confidence 99654
No 391
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.78 E-value=1.6e-05 Score=81.49 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++...... +.--.|++.+.+ .+...+ +..+.
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~--------~~~~ig~v~q~~-~~~~~~-tv~e~ 100 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH--------ARQRVGVVPQFD-NLDPDF-TVREN 100 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH--------HHhcEEEEeccC-cCCCCC-cHHHH
Confidence 46789999999999999999999998767777776666554221100 112255655543 222222 12222
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+..... ++ .. ...+....+.++++.+++....+.+ ...++++.+++-.++ |+
T Consensus 101 l~~~~~-~~--~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE--------Pt 166 (306)
T PRK13537 101 LLVFGR-YF--GL---SAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE--------PT 166 (306)
T ss_pred HHHHHH-Hc--CC---CHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC--------CC
Confidence 221111 11 11 1111223445566666654322222 112233333333333 78
Q ss_pred eccCcccHHHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l 438 (505)
|+++..+...+.+.|.+..
T Consensus 167 ~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLL 185 (306)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 9999999999999888764
No 392
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=8.6e-06 Score=84.79 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ... ..+....|++.+.+ .+...+ +..+.
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~---~~~-~~~~~~ig~v~q~~-~l~~~~-tv~en 102 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSE---KEL-RKARRQIGMIFQHF-NLLSSR-TVFDN 102 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCH---HHH-HHHhcCEEEEeCCC-ccCCCC-cHHHH
Confidence 5778999999999999999999999977777877776655431100 000 00112356665544 232221 12222
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- ..... ......+.+.++++.+++....+.+ ...++.+.+++-.++ |+
T Consensus 103 i~~~~---~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE--------Pt 168 (343)
T PRK11153 103 VALPL---ELAGT---PKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE--------AT 168 (343)
T ss_pred HHHHH---HHcCC---CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------Cc
Confidence 22110 00111 1112233456667777664321111 011122223322233 68
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++..+...+.+.|.++..
T Consensus 169 s~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 169 SALDPATTRSILELLKDINR 188 (343)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999999999998887653
No 393
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.76 E-value=2.8e-05 Score=81.78 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++.. .+.. -...|++.+.+ .+...+ +..+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~----~~~~-----~~~i~~v~Q~~-~l~~~~-tv~en 95 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND----VPPA-----ERGVGMVFQSY-ALYPHL-SVAEN 95 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC----CCHh-----HCCEEEEeCCc-ccCCCC-CHHHH
Confidence 4678999999999999999999999977777777776654321 0100 01356666544 222221 12233
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+... + ........+..+.+.++++.+++....+.+ ...++.+.+++-.++ |+
T Consensus 96 i~~~---~---~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE--------Pt 161 (369)
T PRK11000 96 MSFG---L---KLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE--------PL 161 (369)
T ss_pred HHhH---H---hhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------Cc
Confidence 2211 0 001111122234566777777764321111 011222333333333 78
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++......+.+.|.+...
T Consensus 162 s~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999888888888877654
No 394
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.76 E-value=1.9e-05 Score=77.54 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=76.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++... +.. .....|++.+.+. +...+ +..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~----~~~----~~~~i~~~~q~~~-~~~~~-t~~~ 93 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA----PRA----ALARLGVVFQQPT-LDLDL-SVRQ 93 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC----Chh----hhhhEEEeCCCCC-CcccC-cHHH
Confidence 356789999999999999999999998767777776655443210 000 1123566655432 21111 1223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+.... .............+.++++.+++....+.+ ...++.+.+++-.++ |
T Consensus 94 ~l~~~~------~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE--------P 159 (236)
T TIGR03864 94 NLRYHA------ALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE--------P 159 (236)
T ss_pred HHHHHH------HhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 221110 000111111233455667766654311111 111222333333333 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+.+.+.+.|.+..
T Consensus 160 ~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 89999999999999988765
No 395
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.74 E-value=1.3e-05 Score=77.59 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=34.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYS 65 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 35678999999999999999999999876777777665544
No 396
>PRK10908 cell division protein FtsE; Provisional
Probab=97.74 E-value=1.2e-05 Score=78.05 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 66 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 57789999999999999999999999767777776665543
No 397
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.74 E-value=1.8e-05 Score=77.28 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=33.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 63 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD 63 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 34678999999999999999999999876667776655443
No 398
>PRK01889 GTPase RsgA; Reviewed
Probab=97.74 E-value=2.7e-05 Score=81.45 Aligned_cols=61 Identities=31% Similarity=0.335 Sum_probs=41.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee---eeeeec--cccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL---DVTTHE--GMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl---d~t~~~--~~~~~~~~v~l~DT~Gfi~ 337 (505)
.+.+++++|.+|+|||||+|.|++...+.++++.+.+. .++.+. ..++.+ ..++||||+..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~--~~l~DtpG~~~ 259 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG--GLLIDTPGMRE 259 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC--CeecCCCchhh
Confidence 35689999999999999999999987666776665431 122211 112222 35779999853
No 399
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.74 E-value=1.4e-05 Score=83.18 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=77.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+...+.+.++..... ......|++.+.+ .+...+ +..+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~--------~~~~~ig~v~q~~-~~~~~~-tv~e 133 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR--------LARARIGVVPQFD-NLDLEF-TVRE 133 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH--------HHhccEEEEeCCc-cCCCCC-cHHH
Confidence 35788999999999999999999999877777877776665431110 0112355555433 222222 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+..... ++ .. ......+.+..+++.+++....+.+ ...++++.+++-.++ |
T Consensus 134 ~l~~~~~-~~--~~---~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE--------P 199 (340)
T PRK13536 134 NLLVFGR-YF--GM---STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE--------P 199 (340)
T ss_pred HHHHHHH-Hc--CC---CHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC--------C
Confidence 2221111 11 11 1111123344556666654321111 112233333333344 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 200 t~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 200 TTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 89999999999998888764
No 400
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.74 E-value=3.4e-05 Score=78.39 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHhhceeEEEeeCCCCC-hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CCCCCeEEEeccCc
Q psy50 354 AMLADIIIHVVDVSNPD-YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VTEEYDLLISATRG 424 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~-~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~~v~iSA~~g 424 (505)
+.++|.+++|+|+.++. .....+.++..+...+ .|.++|+||+|+...... ....+++++||+++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~------ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAG------IEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcC------CCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 45699999999998886 4344444444444332 489999999999764221 01457899999999
Q ss_pred ccHHHHHHHHHH
Q psy50 425 TGLAQLKEKVQD 436 (505)
Q Consensus 425 ~gi~eL~~~I~~ 436 (505)
.|+++|+..|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999998864
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=4.4e-05 Score=81.21 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ccceeeeeeeeee------------------eccc----------cCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV--PRNQLFATLDVTT------------------HEGM----------LPN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~--~~d~~ftTld~t~------------------~~~~----------~~~ 323 (505)
..+.+|++||++||||||++..|.+..... .....+.+.|... .... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 456799999999999999999887642100 0111111111110 0000 012
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++++||+|+..... .+.+.+. .+......+-.++|+|++... .....+......++ ..=++++|.|
T Consensus 269 ~~d~VLIDTaGrsqrd~-~~~~~l~-~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~~-------~~~~I~TKlD 337 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQ-MLAEQIA-MLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGHG-------IHGCIITKVD 337 (420)
T ss_pred CCCEEEecCCCCCcchH-HHHHHHH-HHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCCC-------CCEEEEEeee
Confidence 45789999999764322 2222222 122222234577888887432 22333344444343 3458899999
Q ss_pred CCCCCCCC------CCCCeEEEeccCcccH-HHHHH
Q psy50 404 AVPPGERV------TEEYDLLISATRGTGL-AQLKE 432 (505)
Q Consensus 404 l~~~~~~~------~~~~~v~iSA~~g~gi-~eL~~ 432 (505)
-....... ...|+.+++ +|.++ ++|..
T Consensus 338 Et~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~ 371 (420)
T PRK14721 338 EAASLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE 371 (420)
T ss_pred CCCCccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence 65432210 134555554 46666 45443
No 402
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=4e-05 Score=75.35 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++... ... ....|++.+.| .+...+ +..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~-----~~~i~~v~q~~-~~~~~~-tv~e~ 94 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV----PVQ-----ERNVGFVFQHY-ALFRHM-TVFDN 94 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC----Ccc-----ccceEEEecCC-cccCCC-CHHHH
Confidence 56789999999999999999999998766677776665543210 000 12355665544 222211 12222
Q ss_pred HHhhceeEEEeeCCC-CChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 354 AMLADIIIHVVDVSN-PDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 354 i~~ADliL~VvD~s~-~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
+...- ....... .......+.+..+++.+++....+.+ ...++.+.+++-.++ |
T Consensus 95 l~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE--------P 163 (239)
T cd03296 95 VAFGL---RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE--------P 163 (239)
T ss_pred Hhhhh---hhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 21110 0000000 01111223455666766653211111 112223333333344 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++..+...+.+.|.+...
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 164 FGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999998887653
No 403
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.72 E-value=4.3e-05 Score=79.86 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++.... +.. --.|++.+.+ .+...+ +..+.
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~------r~i~~v~Q~~-~l~p~~-tv~en 94 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH---ARD------RKVGFVFQHY-ALFRHM-TVFDN 94 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---HHH------CCEEEEecCc-ccCCCC-cHHHH
Confidence 467899999999999999999999998777888877776543210 100 1245555543 233222 22333
Q ss_pred HHhhceeEEEeeC-CCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 354 AMLADIIIHVVDV-SNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 354 i~~ADliL~VvD~-s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
+... +.+... ......+..+.+.++++.+++....+.+ ...++.+.+++-.++ |
T Consensus 95 i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE--------P 163 (353)
T PRK10851 95 IAFG---LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE--------P 163 (353)
T ss_pred HHhh---hhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------C
Confidence 3221 000000 0112222344567777777764321111 011122233322233 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++...-..+.+.|.+...
T Consensus 164 ~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 164 FGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHH
Confidence 899999988888888887653
No 404
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.72 E-value=3.3e-05 Score=78.43 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=62.8
Q ss_pred cchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CCCCC
Q psy50 344 LEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VTEEY 415 (505)
Q Consensus 344 ie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~ 415 (505)
...++...+.+..||++++|+|+..|..... ..+.+.+. .+|+++|+||+|+.+.... ....+
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~~--------~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKIIG--------NKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHhC--------CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 3344555667888999999999987754331 22333332 2599999999999754211 01246
Q ss_pred eEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
++++||+++.|+++|++.|.+.+.+.
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHH
Confidence 89999999999999999998887653
No 405
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.72 E-value=0.00015 Score=86.77 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=73.9
Q ss_pred hccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc---ceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CC-C-c
Q psy50 271 KQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPR---NQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TT-L-L 344 (505)
Q Consensus 271 r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~---d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~-l-i 344 (505)
+-....|-..|+|++|+||||||+.- |...+... .....+...+ +.+.+.-..+.+++||+|.....+ .. . -
T Consensus 106 ~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~avliDtaG~y~~~~~~~~~~~ 183 (1169)
T TIGR03348 106 RYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDEAVLIDTAGRYTTQDSDPEEDA 183 (1169)
T ss_pred hhhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCCEEEEcCCCccccCCCcccccH
Confidence 33567899999999999999999986 54433221 1111111111 112222234678999999553211 11 1 1
Q ss_pred chhhhhHHHH------HhhceeEEEeeCCCCCh--HHH--------HHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 345 EPFKVTLEDA------MLADIIIHVVDVSNPDY--LQQ--------KQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 345 e~f~~tle~i------~~ADliL~VvD~s~~~~--~~~--------~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
..+...+..+ +-.+.||+++|+++-.. .+. ...+.++.+.+|+. .|+-+|++|||++..
T Consensus 184 ~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~----~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 184 AAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR----FPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC----CCEEEEEecchhhcC
Confidence 1233333333 23689999999875321 111 12334444455652 499999999998843
No 406
>KOG2423|consensus
Probab=97.72 E-value=2e-05 Score=81.18 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
....|++|||||+||||++|.|-....+.+.+++..|.-... +. --..+.++|.||++.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY--It--LmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY--IT--LMKRIFLIDCPGVVY 364 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH--HH--HHhceeEecCCCccC
Confidence 567899999999999999999999888888888877652211 00 124678999999986
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=6.1e-05 Score=78.86 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC--CCccceeeeeeeeeeecc------------------cc----------CCcc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDS--LVPRNQLFATLDVTTHEG------------------ML----------PNRL 325 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~--~~~~d~~ftTld~t~~~~------------------~~----------~~~~ 325 (505)
...|++||+|||||||.+-.|..... .......+-|.|+.+-.. .. -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 67899999999999999988876532 123345556666542110 00 1256
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
.++|+||+|--...+ ..++.+....... ...-..+|++++.. ......+.+-+..+++ --++++|.|-.
T Consensus 283 d~ILVDTaGrs~~D~-~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i-------~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDK-EKIEELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQFSLFPI-------DGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCH-HHHHHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHhccCCc-------ceeEEEccccc
Confidence 899999999432211 2233333222222 23345566676543 2233444444444333 34789999954
Q ss_pred C
Q psy50 406 P 406 (505)
Q Consensus 406 ~ 406 (505)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 3
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=97.72 E-value=3.8e-05 Score=78.38 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHhhceeEEEeeCCCCChHH-HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------CCCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQ-QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------VTEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~-~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~~~~~~v~iSA~~ 423 (505)
+.++|.+++|+|+++|.... ....++..+...+ .|.++|+||+|+...... ....+++++||++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~------ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANG------IKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46799999999998875432 2234444444332 489999999999633211 0135789999999
Q ss_pred cccHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQ 435 (505)
Q Consensus 424 g~gi~eL~~~I~ 435 (505)
+.|+++|++.+.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999998874
No 409
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.72 E-value=1.9e-05 Score=80.68 Aligned_cols=41 Identities=27% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~ 66 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 56789999999999999999999998767777776655543
No 410
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=1.5e-05 Score=80.14 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=77.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... . .+...+|++.+.|......+ +..+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~-----~--~~~~~i~~v~q~~~~~~~~~-tv~e 103 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL-----K--EIRKKIGIIFQNPDNQFIGA-TVED 103 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCH-----H--HHhcceEEEEeCHHHhcCcc-cHHH
Confidence 35778999999999999999999999976767777666554321100 0 01123455554431111111 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+... ..............+.++++.+++....+.+ ...++.+.+++-.++ |
T Consensus 104 nl~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE--------P 169 (271)
T PRK13632 104 DIAFG------LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE--------S 169 (271)
T ss_pred HHHhH------HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--------C
Confidence 22211 0000011112223456667776664321111 112223333333333 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++......+++.|.+...
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~ 190 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRK 190 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999999988753
No 411
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.71 E-value=1.7e-05 Score=81.00 Aligned_cols=142 Identities=14% Similarity=0.104 Sum_probs=76.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++.... . .+....|++.+.+ .+...+ +..+
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~----~~~~~i~~v~q~~-~~~~~~-tv~e 96 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA----R----LARVAIGVVPQFD-NLDPEF-TVRE 96 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH----H----HHhhcEEEEeccc-cCCcCC-cHHH
Confidence 3567899999999999999999999987677777766655432110 0 0112356665543 222221 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+..... . ... ........+..+++.+++....+.+ ...++.+.+++-.++ |
T Consensus 97 ~l~~~~~-~--~~~---~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE--------P 162 (303)
T TIGR01288 97 NLLVFGR-Y--FGM---STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE--------P 162 (303)
T ss_pred HHHHHHH-H--cCC---CHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------C
Confidence 2221110 0 011 1111122344556666654321111 112223334333344 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 163 t~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHH
Confidence 89999999999998888764
No 412
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=5.9e-05 Score=72.63 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=75.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++... ... . .-.|++.+.+ .+...+ +..+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----~~~-~----~~i~~~~q~~-~~~~~~-tv~e 89 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----PPA-D----RPVSMLFQEN-NLFAHL-TVEQ 89 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC----CHh-H----ccEEEEeccc-ccCCCC-cHHH
Confidence 357789999999999999999999998766677766655443210 000 0 1245655544 222221 1223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+..+ .. ... .........+.++++.+++....+.+ ....+.+.+++-.++ |
T Consensus 90 nl~~~---~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE--------P 155 (211)
T cd03298 90 NVGLG---LS-PGL--KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE--------P 155 (211)
T ss_pred HHhcc---cc-ccc--CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 22111 00 000 00111233456667776654321111 011122233333333 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+.+.+.+.|.+..
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 89999999999999998765
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00014 Score=79.05 Aligned_cols=121 Identities=24% Similarity=0.253 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ccceeeeeeeeee------------------eccc----------cCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV--PRNQLFATLDVTT------------------HEGM----------LPN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~--~~d~~ftTld~t~------------------~~~~----------~~~ 323 (505)
..+..|+|+|++|+||||++..|....... .....+.+.|+.. .... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 457899999999999999999987531000 1122222222211 0000 012
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++|+||+|...... .+.+.+. .+.... ....++|++.+.. ......+.+.+... .+.-+|+||+|
T Consensus 428 ~~DLVLIDTaG~s~~D~-~l~eeL~-~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~~-------~~~gvILTKlD 495 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDR-ALAAQLN-WLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAHA-------KPQGVVLTKLD 495 (559)
T ss_pred cCCEEEecCCCcchhhH-HHHHHHH-HHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHhh-------CCeEEEEecCc
Confidence 56899999999754221 1222221 122222 2345667776532 22223333333332 25779999999
Q ss_pred CCC
Q psy50 404 AVP 406 (505)
Q Consensus 404 l~~ 406 (505)
...
T Consensus 496 Et~ 498 (559)
T PRK12727 496 ETG 498 (559)
T ss_pred Ccc
Confidence 643
No 414
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.70 E-value=1.3e-05 Score=77.64 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 69 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 56789999999999999999999999767777776655443
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=6.9e-05 Score=78.37 Aligned_cols=121 Identities=18% Similarity=0.111 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee------------------cccc-----------C--
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH------------------EGML-----------P-- 322 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~------------------~~~~-----------~-- 322 (505)
.++..++++|++||||||++..|+...........+.+.|+... .... .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999998753211111122222222110 0000 0
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
.+..++++||+|..... ..+++.+.... .....|.+++|+++... .. .+.++++.+..-+ +.-+|++|.
T Consensus 284 ~~~D~VLIDTAGr~~~d-~~~l~EL~~l~-~~~~p~~~~LVLsag~~--~~---d~~~i~~~f~~l~----i~glI~TKL 352 (407)
T PRK12726 284 NCVDHILIDTVGRNYLA-EESVSEISAYT-DVVHPDLTCFTFSSGMK--SA---DVMTILPKLAEIP----IDGFIITKM 352 (407)
T ss_pred CCCCEEEEECCCCCccC-HHHHHHHHHHh-hccCCceEEEECCCccc--HH---HHHHHHHhcCcCC----CCEEEEEcc
Confidence 24688999999964311 12223332222 22245677777765322 22 2234444333211 356889999
Q ss_pred CCC
Q psy50 403 DAV 405 (505)
Q Consensus 403 Dl~ 405 (505)
|-.
T Consensus 353 DET 355 (407)
T PRK12726 353 DET 355 (407)
T ss_pred cCC
Confidence 954
No 416
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.68 E-value=4.3e-05 Score=73.69 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=33.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 62 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP 62 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCcc
Confidence 35778999999999999999999999876666766655443
No 417
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.68 E-value=3.9e-05 Score=73.89 Aligned_cols=142 Identities=14% Similarity=0.168 Sum_probs=76.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+...++.... ... .-.|++.+.+ .+...+ +..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~---~~~------~~i~~~~q~~-~~~~~~-tv~~ 91 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP---PKD------RDIAMVFQNY-ALYPHM-TVYD 91 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC---ccc------ceEEEEecCh-hhccCC-CHHH
Confidence 3577899999999999999999999987666777666555432100 000 1355555443 122111 1122
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+... .-.. ........+.+.++++.+++....+.+ ...++.+.|++-.++ |
T Consensus 92 ~l~~~-~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE--------P 157 (213)
T cd03301 92 NIAFG-LKLR-----KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE--------P 157 (213)
T ss_pred HHHHH-HHhc-----CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 22111 0000 011112233455666766654221111 112223334333344 7
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+++++..+...+.+.|.+...
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999999888753
No 418
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=3.2e-05 Score=76.20 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.++.... .. .+...+||+.+.+ .+.... +..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~~i~~~~q~~-~~~~~~-tv~e 94 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD-----PV--ELRRKIGYVIQQI-GLFPHM-TVEE 94 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC-----hH--HhhcceEEEccCc-cccCCC-cHHH
Confidence 3567899999999999999999999987676777766554432100 00 0112355665543 222111 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc--ccCcc--------------EEEEEeCCCCCCCCCCCCCCCe
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE--KILEH--------------VLVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~--~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~ 416 (505)
.+...-. + .........+.+.++++.+++.. ..+.+ ...++.+.+++-.++
T Consensus 95 ~l~~~~~-~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE------- 161 (242)
T cd03295 95 NIALVPK-L-----LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE------- 161 (242)
T ss_pred HHHHHHH-H-----cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC-------
Confidence 2221100 0 01111222334566777776642 11111 112223333333333
Q ss_pred EEEeccCcccHHHHHHHHHHHHh
Q psy50 417 LLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++..+...+.+.|.+...
T Consensus 162 -Pt~~LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 162 -PFGALDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH
Confidence 7899999999999998888754
No 419
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=2.1e-05 Score=79.75 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=80.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ... .+...+|++.+.|....-. ....+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~--~~~~~ig~v~q~~~~~~~~-~tv~e 103 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV---KLS--DIRKKVGLVFQYPEYQLFE-ETIEK 103 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc---cHH--HHhhceEEEecCchhcccc-ccHHH
Confidence 35778999999999999999999999977777877776655432100 000 0112456666654211111 12233
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcc--cccCccE--------------EEEEeCCCCCCCCCCCCCCCe
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELE--EKILEHV--------------LVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~--~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~ 416 (505)
++..... ..+. ...+..+.+.++++.+|+. ...+.+. ..++++.+++-.++
T Consensus 104 ~l~~~~~---~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE------- 170 (287)
T PRK13637 104 DIAFGPI---NLGL---SEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE------- 170 (287)
T ss_pred HHHhHHH---HCCC---CHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-------
Confidence 3321100 0011 1122234566777777764 1111110 11222333322233
Q ss_pred EEEeccCcccHHHHHHHHHHHHh
Q psy50 417 LLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++..+...+.+.|.+...
T Consensus 171 -Pt~gLD~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 171 -PTAGLDPKGRDEILNKIKELHK 192 (287)
T ss_pred -CccCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999987753
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00012 Score=77.51 Aligned_cols=121 Identities=18% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC-CCccceeeeeeeeeee------------------cc---------ccCCcceE
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDS-LVPRNQLFATLDVTTH------------------EG---------MLPNRLRI 327 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~-~~~~d~~ftTld~t~~------------------~~---------~~~~~~~v 327 (505)
...++++|++||||||++..|..... .......+.+.|+... .. ....+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 45789999999999999999875320 0011122222222000 00 00135678
Q ss_pred EEEeeeeeeecCCCCCcchhhhhHHHHH--hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 328 LYVDTIGFISNIPTTLLEPFKVTLEDAM--LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 328 ~l~DT~Gfi~~lp~~lie~f~~tle~i~--~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
+++||+|+..... ..++.+...+..+. ...-.++|+|++... .....+.+....++ +.=+|++|.|-.
T Consensus 303 VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~~-------~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESLN-------YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCCC-------CCEEEEEcccCC
Confidence 9999999753211 23333333222221 123577889987553 22333444444444 345899999964
Q ss_pred C
Q psy50 406 P 406 (505)
Q Consensus 406 ~ 406 (505)
.
T Consensus 373 ~ 373 (432)
T PRK12724 373 D 373 (432)
T ss_pred C
Confidence 3
No 421
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.67 E-value=3.1e-05 Score=76.19 Aligned_cols=40 Identities=28% Similarity=0.205 Sum_probs=33.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl 312 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+...
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 83 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL 83 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 3577899999999999999999999987666777666544
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00026 Score=74.79 Aligned_cols=122 Identities=21% Similarity=0.128 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC----Cccceeeeeeeeeeec------------------cc----------cC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL----VPRNQLFATLDVTTHE------------------GM----------LP 322 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~----~~~d~~ftTld~t~~~------------------~~----------~~ 322 (505)
....|+++|++|+||||.+..|...... ......+.+.|+.... .. ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3458899999999999999888743210 1123333333332100 00 01
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
.+..++++||+|...... ..+..+...++......-.++|+|++... .... ++++.+..- .+.=++++|.
T Consensus 253 ~~~DlVLIDTaGr~~~~~-~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~---~~~~~~~~~----~~~~~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDF-MKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVK---EIFHQFSPF----SYKTVIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCH-HHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHH---HHHHHhcCC----CCCEEEEEec
Confidence 356899999999653211 01222333333322122578899987652 2222 344443211 1345889999
Q ss_pred CCCC
Q psy50 403 DAVP 406 (505)
Q Consensus 403 Dl~~ 406 (505)
|-..
T Consensus 323 Det~ 326 (388)
T PRK12723 323 DETT 326 (388)
T ss_pred cCCC
Confidence 9644
No 423
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=1.7e-05 Score=80.19 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=78.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... .. +....|++.+.|...+... ...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-----~~--~~~~i~~v~q~~~~~~~~~-tv~e 101 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV-----WD--IRHKIGMVFQNPDNQFVGA-TVED 101 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-----HH--HHhhceEEEcChHHhcccc-cHHH
Confidence 35788999999999999999999999977777887776655421100 00 1123566655442111111 1223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
++.... . +. ........+.+.++++.+++....+.+. ..++.+.+++-.++ |
T Consensus 102 ni~~~~---~--~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE--------P 167 (279)
T PRK13650 102 DVAFGL---E--NK-GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE--------A 167 (279)
T ss_pred HHHhhH---H--hC-CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC--------C
Confidence 222110 0 00 1111222344566777777643211111 01112222222222 6
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+++++......+.+.|.+...
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 168 TSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999998887753
No 424
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=1.4e-05 Score=77.05 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
.+ .++|+|++|+|||||++.|+|...+..+.+.+...+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 62 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD 62 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCc
Confidence 45 899999999999999999999876667776655543
No 425
>KOG2655|consensus
Probab=97.65 E-value=0.00024 Score=73.62 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC------ccceeeeeeeeeeecccc-CCc--ceEEEEeeeeeeecCCCCC-c
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLV------PRNQLFATLDVTTHEGML-PNR--LRILYVDTIGFISNIPTTL-L 344 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~------~~d~~ftTld~t~~~~~~-~~~--~~v~l~DT~Gfi~~lp~~l-i 344 (505)
-...+.++|.+|.|||||+|.|++.+... ....+-.|..+..+...+ +++ ..+.++|||||-+....+. .
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 44688999999999999999998874221 111222233333333322 233 4678899999965322110 1
Q ss_pred c--------hhhhhHH--------HHH--hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 345 E--------PFKVTLE--------DAM--LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 345 e--------~f~~tle--------~i~--~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
+ .|...+. .+. ..+++|+.+..+.......+- ..++.+.- ..++|-|+-|+|...
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di---~~Mk~l~~----~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI---EFMKKLSK----KVNLIPVIAKADTLT 172 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH---HHHHHHhc----cccccceeeccccCC
Confidence 1 1111111 011 357888888765432222221 22333321 136888999999887
Q ss_pred CCCC
Q psy50 407 PGER 410 (505)
Q Consensus 407 ~~~~ 410 (505)
.++.
T Consensus 173 ~~El 176 (366)
T KOG2655|consen 173 KDEL 176 (366)
T ss_pred HHHH
Confidence 7664
No 426
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.64 E-value=2.6e-05 Score=76.37 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED 63 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE
Confidence 5678999999999999999999999876667777665544
No 427
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=2.3e-05 Score=75.41 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP 63 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCc
Confidence 5678999999999999999999999876666666555443
No 428
>KOG2485|consensus
Probab=97.63 E-value=5.6e-05 Score=76.13 Aligned_cols=70 Identities=26% Similarity=0.281 Sum_probs=52.5
Q ss_pred HHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCC-----CCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 267 MRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDD-----DSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 267 ~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~-----~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.|..|.......|-+||-||+|||||+|++... ..+.++..+..|.++..+- .......+.++||||++.
T Consensus 134 ~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~i-ri~~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 134 VRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERI-RISHRPPVYLIDTPGILV 208 (335)
T ss_pred HHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhhe-EeccCCceEEecCCCcCC
Confidence 355555677889999999999999999998643 3456788888887764322 233566799999999876
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00016 Score=77.40 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC--CCccceeeeeeeeee------------------eccc----------cCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDS--LVPRNQLFATLDVTT------------------HEGM----------LPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~--~~~~d~~ftTld~t~------------------~~~~----------~~~~ 324 (505)
++..++++|++||||||++..|..... .......+-+.|+.. .... ...+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 356899999999999999888765421 111233333333311 0000 0124
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
..++++||+|.....+ ...+.+...++.....+-..+|++++.. ......+...+..++ +.-++++|.|-
T Consensus 300 ~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~-------~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP-------LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC-------CCEEEEecccc
Confidence 6789999999743221 1222232222211122355777887543 222334444444433 23588999996
Q ss_pred CC
Q psy50 405 VP 406 (505)
Q Consensus 405 ~~ 406 (505)
..
T Consensus 370 t~ 371 (424)
T PRK05703 370 TS 371 (424)
T ss_pred cc
Confidence 43
No 430
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=2.3e-05 Score=79.15 Aligned_cols=42 Identities=24% Similarity=0.106 Sum_probs=36.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.++
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i 71 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL 71 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 356789999999999999999999999877788888777654
No 431
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=3.2e-05 Score=77.69 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=34.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~ 87 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQD 87 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 46778999999999999999999999876667777665544
No 432
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00022 Score=76.39 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=72.8
Q ss_pred hccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhh
Q psy50 271 KQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVT 350 (505)
Q Consensus 271 r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~t 350 (505)
...+....||+||+||+|||||+..|.....-.+-+.+ +-.+|+. ......+.|...|. ++ .+.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i--~GPiTvv---sgK~RRiTflEcp~-------Dl----~~m 127 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI--RGPITVV---SGKTRRITFLECPS-------DL----HQM 127 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc--CCceEEe---ecceeEEEEEeChH-------HH----HHH
Confidence 34456667899999999999999999876311111110 0011111 12345566666553 22 223
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
+.-..-||++|+++|..-....+.. ..+.+|...|++ .++-|++..|+....
T Consensus 128 iDvaKIaDLVlLlIdgnfGfEMETm-EFLnil~~HGmP-----rvlgV~ThlDlfk~~ 179 (1077)
T COG5192 128 IDVAKIADLVLLLIDGNFGFEMETM-EFLNILISHGMP-----RVLGVVTHLDLFKNP 179 (1077)
T ss_pred HhHHHhhheeEEEeccccCceehHH-HHHHHHhhcCCC-----ceEEEEeecccccCh
Confidence 4445669999999998766544433 456778777874 478899999987653
No 433
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.60 E-value=5.5e-05 Score=79.07 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 68 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 46789999999999999999999999877788887776654
No 434
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=5e-05 Score=76.48 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=78.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+..... ... +.-..|++.+.|....... +..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~~i~~v~q~~~~~~~~~-tv~e 99 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN-----EKW--VRSKVGLVFQDPDDQVFSS-TVWD 99 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC-----HHH--HHhhEEEEecChhhhhccC-cHHH
Confidence 3567899999999999999999999987677777766665432100 000 0112566655442111111 2233
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
++... . . . ...........+..++..+++....+.+ ...++++.|++-.++ |
T Consensus 100 ~l~~~-~--~--~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE--------P 165 (274)
T PRK13647 100 DVAFG-P--V--N-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE--------P 165 (274)
T ss_pred HHHhh-H--H--H-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC--------C
Confidence 33211 0 0 0 0111112223455667766664321111 112223333333344 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 166 t~~LD~~~~~~l~~~l~~~~ 185 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLH 185 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHH
Confidence 89999999999999998775
No 435
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=6.7e-05 Score=78.38 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=36.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i 70 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV 70 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 356789999999999999999999999878888887776654
No 436
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.59 E-value=6.7e-05 Score=79.06 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i 78 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI 78 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 46789999999999999999999999877788888777654
No 437
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00016 Score=75.12 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~ 316 (505)
..+..++++|++||||||||++|.|-..++.+.+.+.+.+++.
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 4678999999999999999999999998989999888887654
No 438
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=6.3e-05 Score=72.30 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-----ccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV-----PRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT 341 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-----~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~ 341 (505)
+.....|++|++||||||||.+|....... .+.+.+.+.++.... -..+.+--.+|.+.|.|.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~-----~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK-----VDVVELRRRVGMVFQKPN 98 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC-----CCHHHHHHHheeeccCCC
Confidence 456789999999999999999988764332 245555555543211 111223346787777663
No 439
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=2.7e-05 Score=78.24 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=34.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.++
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 65 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence 356789999999999999999999998767777777666543
No 440
>KOG0448|consensus
Probab=97.58 E-value=0.0007 Score=74.42 Aligned_cols=121 Identities=25% Similarity=0.346 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee------------------------ee------------e---
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL------------------------DV------------T--- 315 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl------------------------d~------------t--- 315 (505)
..-+|+|.|.+|+||||++|+++..... ++++..+|- +. .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klL-P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLL-PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhC-cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4578999999999999999999876522 222211110 00 0
Q ss_pred ----eeccccCCc------ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc
Q psy50 316 ----THEGMLPNR------LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385 (505)
Q Consensus 316 ----~~~~~~~~~------~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l 385 (505)
.-.+.++++ ..+.++|.||.-.+ .. ..+. .-....+||++++|+.+-+..+....+.+...-++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~--se-~tsw--id~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~- 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--SE-LTSW--IDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE- 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc--hh-hhHH--HHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence 000111111 25678888885321 11 1111 12335679999999987665544433333332222
Q ss_pred CcccccCccEEEEEeCCCCCCCC
Q psy50 386 ELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 386 g~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
...+.++.||.|.....
T Consensus 261 ------KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 261 ------KPNIFILNNKWDASASE 277 (749)
T ss_pred ------CCcEEEEechhhhhccc
Confidence 13567777888987653
No 441
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=3.2e-05 Score=77.59 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|+|||||++.|+|...+..+.+.+.+.++
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 57789999999999999999999999766777776665543
No 442
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=72.00 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+...++.... .. ....||+.+.+ .+...+ +..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---~~------~~~i~~~~q~~-~~~~~~-tv~e 90 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP---PS------RRPVSMLFQEN-NLFSHL-TVAQ 90 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC---hh------hccEEEEeccc-ccccCC-cHHH
Confidence 3577899999999999999999999987676777766554432100 00 11345555443 222221 1223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+... .. ..... .......+.++++.+++....+.+. ..++.+.+++-.++ |
T Consensus 91 ~l~~~---~~--~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE--------P 156 (232)
T PRK10771 91 NIGLG---LN--PGLKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE--------P 156 (232)
T ss_pred HHhcc---cc--cccCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC--------C
Confidence 22111 00 00011 1122344666777777643211111 12223333333333 6
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+++++..+...+.+.|.+...
T Consensus 157 ~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 899999999999999988754
No 443
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.55 E-value=8.1e-05 Score=71.86 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.++... . . +.-..|++.+.| .+...+ +..+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~-~----~~~~i~~v~q~~-~~~~~~-t~~e 89 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL----A-P----YQRPVSMLFQEN-NLFAHL-TVRQ 89 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC----C-h----hccceEEEeccC-ccCCCC-cHHH
Confidence 457889999999999999999999999767777777665543210 0 0 112355555544 222221 2223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+... +. ... ... ......+.++++.+++....+.+. ..++++.+++-.++ |
T Consensus 90 n~~~~---~~-~~~-~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE--------P 155 (213)
T TIGR01277 90 NIGLG---LH-PGL-KLN-AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE--------P 155 (213)
T ss_pred HHHhH---hh-ccC-Ccc-HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 32211 00 000 001 111234556677766643211110 11223333333333 6
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+++++..+...+.+.|.+...
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHH
Confidence 889999999999999988764
No 444
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00027 Score=79.97 Aligned_cols=147 Identities=16% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc--cceeeeeeeeeeec-------------ccc---------------CCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP--RNQLFATLDVTTHE-------------GML---------------PNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~--~d~~ftTld~t~~~-------------~~~---------------~~~ 324 (505)
.+.+|++||++||||||++..|++...... ..+.+.+.|+..-. +.. ..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 356899999999999999999987542111 13344444432100 000 124
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiD 403 (505)
..++|+||+|...... .+.+.+. .+......+-.++|+|++.. ......+.+.++.. +. .+.=+|++|.|
T Consensus 264 ~D~VLIDTAGRs~~d~-~l~eel~-~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~-----~i~glIlTKLD 334 (767)
T PRK14723 264 KHLVLIDTVGMSQRDR-NVSEQIA-MLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE-----DVDGCIITKLD 334 (767)
T ss_pred CCEEEEeCCCCCccCH-HHHHHHH-HHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC-----CCCEEEEeccC
Confidence 5789999999543221 2222221 12222335678899998743 22233333333322 11 13457899999
Q ss_pred CCCCCCC------CCCCCeEEEeccCcccH-HHHHH
Q psy50 404 AVPPGER------VTEEYDLLISATRGTGL-AQLKE 432 (505)
Q Consensus 404 l~~~~~~------~~~~~~v~iSA~~g~gi-~eL~~ 432 (505)
-....-. ....|+.+++ +|+++ ++|..
T Consensus 335 Et~~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 335 EATHLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred CCCCccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence 6543221 0145666654 56777 56544
No 445
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=8.4e-05 Score=78.39 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i 83 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 46789999999999999999999999877778877776554
No 446
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.54 E-value=0.00031 Score=64.29 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q psy50 279 VAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~ 299 (505)
|+++|.+|+||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998753
No 447
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=4e-05 Score=77.54 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=35.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.+.
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 357889999999999999999999999777777777766554
No 448
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00028 Score=82.92 Aligned_cols=160 Identities=19% Similarity=0.098 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee-eeeeccccC
Q psy50 244 MVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD-VTTHEGMLP 322 (505)
Q Consensus 244 r~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld-~t~~~~~~~ 322 (505)
..++.++....+.|+..+..+ ...|-..+.|-..|||+||+||||++..- |...+.....--.+++ +.++.+...
T Consensus 96 ~~l~~~~~e~~~~l~r~~~~~---~~rr~lyeLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdww 171 (1188)
T COG3523 96 EELNAQLGEALRTLKRRKRGR---PGRRYLYELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWW 171 (1188)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---cccchhhcCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcc
Confidence 344555555555555444333 24445678899999999999999998763 3333322211111111 112233333
Q ss_pred CcceEEEEeeeeeee-cCCCCCcc-----hhhhhHHH---HHhhceeEEEeeCCCCCh---HHH---HHHHHHHHHhcCc
Q psy50 323 NRLRILYVDTIGFIS-NIPTTLLE-----PFKVTLED---AMLADIIIHVVDVSNPDY---LQQ---KQHVDETLQHLEL 387 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~-~lp~~lie-----~f~~tle~---i~~ADliL~VvD~s~~~~---~~~---~~~v~~~L~~lg~ 387 (505)
-....+++||.|=.. +......+ .|-.-+.. .+--+.|++.+|+++-.. .+. ...+..-|.++.-
T Consensus 172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251 (1188)
T ss_pred cccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999433 21111111 11111111 233588888888865322 111 1112222333321
Q ss_pred ccccCccEEEEEeCCCCCCC
Q psy50 388 EEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 388 ~~~~~~p~IlV~NKiDl~~~ 407 (505)
.-....|+.+++||.|++..
T Consensus 252 tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 252 TLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred hhccCCceEEEEeccccccc
Confidence 11123599999999999873
No 449
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.52 E-value=8.5e-05 Score=74.33 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=34.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD 74 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 35788999999999999999999999976777777666554
No 450
>PRK12288 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.00017 Score=75.10 Aligned_cols=77 Identities=23% Similarity=0.187 Sum_probs=55.5
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------CCCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------VTEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~~~~~~v~iSA~~ 423 (505)
.++|.+++|++............++......+ .|.++|+||+|+....+. ....+++++||++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~------i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLG------IEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcC------CCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46899999999875555444455544444333 488999999999764321 0135799999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
+.|+++|++.|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999998653
No 451
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=3.7e-05 Score=77.52 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=35.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.++
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 356789999999999999999999999877778777766543
No 452
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.52 E-value=8.3e-05 Score=78.02 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc--cceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVP--RNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~--~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
..+..++|+|++|||||||++.|+|...+.. +.+.+.+.+++... +.. --.|++.+.+ .+...+ +..
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~---~~~------r~ig~vfQ~~-~l~p~~-tv~ 97 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP---PHK------RGLALLFQNY-ALFPHL-KVE 97 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC---HHH------CCEEEEECCc-ccCCCC-cHH
Confidence 4677999999999999999999999987777 77777665542100 000 1245555543 232221 223
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v 417 (505)
+++..+- .. ......+....+.++++.+++....+++. ..++.+.+++-.++
T Consensus 98 enl~~~l---~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE-------- 163 (362)
T TIGR03258 98 DNVAFGL---RA---QKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE-------- 163 (362)
T ss_pred HHHHHHH---HH---cCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------
Confidence 3332220 00 11111222345666777777643211110 01112222222222
Q ss_pred EEeccCcccHHHHHHHHHHHHh
Q psy50 418 LISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++...-.++.+.|.+...
T Consensus 164 P~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 164 PLSALDANIRANMREEIAALHE 185 (362)
T ss_pred ccccCCHHHHHHHHHHHHHHHH
Confidence 7899999888888888877653
No 453
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.0001 Score=74.86 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=79.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC-CCcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT-TLLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~-~lie~f~~tl 351 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ... ...+...+|++.+.|. .+.. + +..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--~~~-~~~~~~~ig~v~q~~~~~l~~-~-tv~ 104 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK--NKK-LKPLRKKVGIVFQFPEHQLFE-E-TVE 104 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc--cch-HHHHHhhEEEEeeCchhhhhh-h-hHH
Confidence 35778999999999999999999999977777777666554321000 000 0001124566665542 1221 1 233
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcc-cccCcc--------------EEEEEeCCCCCCCCCCCCCCCe
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELE-EKILEH--------------VLVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~-~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~ 416 (505)
+++..... .... ......+.+.++++.+++. ...+.+ ...++++.+++-.++
T Consensus 105 eni~~~~~---~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE------- 171 (290)
T PRK13634 105 KDICFGPM---NFGV---SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE------- 171 (290)
T ss_pred HHHHHHHH---HcCC---CHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-------
Confidence 33321110 0011 1122223456677777764 211111 011223333333333
Q ss_pred EEEeccCcccHHHHHHHHHHHHh
Q psy50 417 LLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++..+...+++.|.+...
T Consensus 172 -Pt~~LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 172 -PTAGLDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999887643
No 454
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=8.3e-05 Score=76.94 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=80.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCC-CcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT-LLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~-lie~f~~tl 351 (505)
...+..++|+|.+|+|||||++.|+|...+..+.+.+.+.++..... .... .+--.+|++.+.|.. +...+ ...
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~---~~~~-~~r~~i~~v~Q~~~~~l~p~~-~v~ 112 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP---EAQK-LLRQKIQIVFQNPYGSLNPRK-KVG 112 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH---HHHH-HHhCCEEEEEcCchhhcCCcc-CHH
Confidence 35778999999999999999999999876767777776665432110 0000 011235666665531 22211 111
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc-ccCc-c-------------EEEEEeCCCCCCCCCCCCCCCe
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE-KILE-H-------------VLVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~-~~~~-p-------------~IlV~NKiDl~~~~~~~~~~~~ 416 (505)
+.+... +..+ .+. ...+..+.+.++|+.+|+.. ..+. | ...++.+.+++-.++
T Consensus 113 ~~l~~~-~~~~-~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE------- 180 (327)
T PRK11308 113 QILEEP-LLIN-TSL---SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE------- 180 (327)
T ss_pred HHHHHH-HHHc-cCC---CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC-------
Confidence 112111 0011 011 11223445677888887742 1111 0 011222233332333
Q ss_pred EEEeccCcccHHHHHHHHHHHHh
Q psy50 417 LLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++-.....+++.|.+...
T Consensus 181 -Pts~LD~~~~~~i~~lL~~l~~ 202 (327)
T PRK11308 181 -PVSALDVSVQAQVLNLMMDLQQ 202 (327)
T ss_pred -CCccCCHHHHHHHHHHHHHHHH
Confidence 7999999988888888887653
No 455
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=3.6e-05 Score=81.66 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=36.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i 92 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDI 92 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEEC
Confidence 467889999999999999999999999877778877776654
No 456
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.50 E-value=0.00021 Score=70.27 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=34.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 65 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD 65 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCee
Confidence 35678999999999999999999999876777777666544
No 457
>PRK13796 GTPase YqeH; Provisional
Probab=97.48 E-value=0.00028 Score=74.09 Aligned_cols=85 Identities=27% Similarity=0.345 Sum_probs=60.2
Q ss_pred chhhhhHHHHHhhc-eeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------------
Q psy50 345 EPFKVTLEDAMLAD-IIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------------ 411 (505)
Q Consensus 345 e~f~~tle~i~~AD-liL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------ 411 (505)
+.|...++++..+| ++++|+|+.+.... +...+.++. . .+|+++|+||+|+.+.....
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~s-----~~~~L~~~~-~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k 127 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNGS-----WIPGLHRFV-G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK 127 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCCc-----hhHHHHHHh-C---CCCEEEEEEchhhCCCccCHHHHHHHHHHHHH
Confidence 35667888888777 99999999875421 222333321 1 24899999999997532210
Q ss_pred --C--CCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 --T--EEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 --~--~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
. ...++++||++|.|+++|++.|.+..
T Consensus 128 ~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred hcCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 0 12689999999999999999998764
No 458
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.48 E-value=0.00028 Score=75.10 Aligned_cols=141 Identities=18% Similarity=0.128 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..-|++|.+|||||||||.|.|...++.+.+...+....... |.... -=-.|.+.|.+ .+++.|. ..++
T Consensus 28 ~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s---P~dA~---~~GIGMVhQHF-~Lv~~lT-V~EN 99 (501)
T COG3845 28 KKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS---PRDAI---RLGIGMVHQHF-MLVPTLT-VAEN 99 (501)
T ss_pred cCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC---HHHHH---HcCCcEEeecc-ccccccc-hhhh
Confidence 466788999999999999999999999898999888877654322 11000 00123343332 4555553 2222
Q ss_pred HHhhceeEEEeeCCC---CChHHHHHHHHHHHHhcCcccccCccEEEEE-----------------eCCCCCCCCCCCCC
Q psy50 354 AMLADIIIHVVDVSN---PDYLQQKQHVDETLQHLELEEKILEHVLVVG-----------------NKVDAVPPGERVTE 413 (505)
Q Consensus 354 i~~ADliL~VvD~s~---~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~-----------------NKiDl~~~~~~~~~ 413 (505)
+++-...+. .+.....+.+.++.+++|++-. |--.|. .-.|++..++
T Consensus 100 ------iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd---p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE---- 166 (501)
T COG3845 100 ------IILGLEPSKGGLIDRRQARARIKELSERYGLPVD---PDAKVADLSVGEQQRVEILKALYRGARLLILDE---- 166 (501)
T ss_pred ------hhhcCccccccccCHHHHHHHHHHHHHHhCCCCC---ccceeecCCcchhHHHHHHHHHhcCCCEEEEcC----
Confidence 111111110 1122334456666666666432 211111 1112222222
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|.++..-+++|++.+..+..
T Consensus 167 ----PTaVLTP~E~~~lf~~l~~l~~ 188 (501)
T COG3845 167 ----PTAVLTPQEADELFEILRRLAA 188 (501)
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999997653
No 459
>PRK01889 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00018 Score=75.33 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-C-------CCCCCeEEEeccCcc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE-R-------VTEEYDLLISATRGT 425 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~-~-------~~~~~~v~iSA~~g~ 425 (505)
+.+.|.+++|+++..+......+.++..+...++ |.++|+||+||.+... . ....+++++||++|.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i------~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGA------EPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCC------CEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCc
Confidence 3568999999999644333345555666666654 5688999999986421 0 114578999999999
Q ss_pred cHHHHHHHHH
Q psy50 426 GLAQLKEKVQ 435 (505)
Q Consensus 426 gi~eL~~~I~ 435 (505)
|+++|..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999999985
No 460
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.47 E-value=0.001 Score=72.01 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=43.3
Q ss_pred ccEEEEEeCCCCCCCCCC---C------------------CCCCeEEEeccCcccHHHHHHHHHHHHhhhcC------cc
Q psy50 393 EHVLVVGNKVDAVPPGER---V------------------TEEYDLLISATRGTGLAQLKEKVQDMILKATG------RK 445 (505)
Q Consensus 393 ~p~IlV~NKiDl~~~~~~---~------------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~------~~ 445 (505)
.|+++|.+|+|.+..-+. . -+...|++|++...+++-|+.+|...+....- ..
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f~~~~~vv~ 276 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPFKTPAQVVE 276 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCCCCCceeec
Confidence 589999999997542110 0 04568999999999999999999888764321 13
Q ss_pred eEEEEecC
Q psy50 446 NITMRVRS 453 (505)
Q Consensus 446 ~~~l~~p~ 453 (505)
.-.+.||.
T Consensus 277 ~d~ifIP~ 284 (472)
T PF05783_consen 277 RDAIFIPA 284 (472)
T ss_pred ccccccCC
Confidence 34567775
No 461
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.46 E-value=8.1e-05 Score=78.07 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=37.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t 315 (505)
...+..++|+|++|||||||+++|+|...+..+.+.+.+.++.
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM 58 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3567899999999999999999999998888888888776653
No 462
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.00026 Score=71.23 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee------------------eeccc-----------c--CC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT------------------THEGM-----------L--PN 323 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t------------------~~~~~-----------~--~~ 323 (505)
++.+++++|++|+||||++..|++..........+.+.|.. ..... + ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 56899999999999999999887542100011111111110 00000 0 12
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++++||+|-.... ..+++.+...+. ....|.+++|+|++... .+...+.+.++.++ +--++++|.|
T Consensus 154 ~~D~ViIDt~Gr~~~~-~~~l~el~~~~~-~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~~-------~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-SETVEEMIETMG-QVEPDYICLTLSASMKS--KDMIEIITNFKDIH-------IDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCC-HHHHHHHHHHHh-hhCCCeEEEEEcCccCH--HHHHHHHHHhCCCC-------CCEEEEEeec
Confidence 4688999999954321 123444433333 33467789999986432 12223333344333 3458899999
Q ss_pred CCC
Q psy50 404 AVP 406 (505)
Q Consensus 404 l~~ 406 (505)
-..
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 644
No 463
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=3.8e-05 Score=75.10 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~ 316 (505)
..+..+++|||+|||||||+|.++|...++.+.+.|.+.+++.
T Consensus 28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~ 70 (250)
T COG0411 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITG 70 (250)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCC
Confidence 4678999999999999999999999998888999998887754
No 464
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.44 E-value=0.00042 Score=64.56 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=42.0
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+..++++||+|.... .....+.+.. +......|.+++|+|+.... ...+......+..+ ..-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l~~l~~-l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-------~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLMEELKK-IKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-------ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchh-hHHHHHHHHH-HHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-------CCEEEEECCc
Confidence 556899999996532 1122333322 22334589999999986442 22333333444443 2457889999
Q ss_pred CCCC
Q psy50 404 AVPP 407 (505)
Q Consensus 404 l~~~ 407 (505)
....
T Consensus 151 ~~~~ 154 (173)
T cd03115 151 GDAR 154 (173)
T ss_pred CCCC
Confidence 7543
No 465
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.44 E-value=5.1e-05 Score=74.27 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=31.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl 312 (505)
-+.+...+++|++||||||.+..|.+...++.+.+...+.
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~ 64 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGG 64 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCc
Confidence 3567789999999999999999999987666666544433
No 466
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00013 Score=75.63 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCC----CCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDS----LVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~----~~~~d~~ftTld~ 314 (505)
...+..++|+|.+|||||||+++|+|... +..+.+.+.+.++
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i 75 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDL 75 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEEC
Confidence 35778999999999999999999999863 3456666665543
No 467
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=8.3e-05 Score=75.10 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=34.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.+.++
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 74 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence 356789999999999999999999999777777776665443
No 468
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=4.9e-05 Score=76.84 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---cceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVP---RNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~---~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+.. +.+.+.+.++
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 35678999999999999999999999875544 5666655543
No 469
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00017 Score=70.02 Aligned_cols=44 Identities=27% Similarity=0.310 Sum_probs=39.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH 317 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~ 317 (505)
+.+..|+++|++|||||||+++++|.-.+..+.+.|.+.|++..
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~ 70 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC
Confidence 56789999999999999999999999877789999998887653
No 470
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.41 E-value=0.00014 Score=79.47 Aligned_cols=146 Identities=20% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... .. ..-...|++.+.+ .+...+ +..+.
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-----~~-~~~~~i~~v~q~~-~~~~~~-tv~e~ 99 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP-----KS-SQEAGIGIIHQEL-NLIPQL-TIAEN 99 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH-----HH-HHhCCEEEEEcch-hccCCC-cHHHH
Confidence 4678999999999999999999999876777777666554321100 00 0012245555443 222221 12232
Q ss_pred HHhhceeEEEeeC-CCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 354 AMLADIIIHVVDV-SNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 354 i~~ADliL~VvD~-s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
+... ...... ...........+.++++.+++....+++ ...++++.+++-.++ |
T Consensus 100 l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE--------P 168 (501)
T PRK10762 100 IFLG---REFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE--------P 168 (501)
T ss_pred hhhc---cccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------C
Confidence 2111 000000 0001112223456677777764322222 113334455544455 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+++++..+...+.+.|.+..
T Consensus 169 t~~LD~~~~~~l~~~l~~l~ 188 (501)
T PRK10762 169 TDALTDTETESLFRVIRELK 188 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999888764
No 471
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.40 E-value=0.00015 Score=62.75 Aligned_cols=112 Identities=18% Similarity=0.011 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
+|+++|..|+|||+|+.++..... ..+....| .|++.-.+ ...+.+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~--~~~~~~~t---------------------~~~~~~~~-----------~~~~s~ 47 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF--DYVPTVFT---------------------IGIDVYDP-----------TSYESF 47 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc--cccCceeh---------------------hhhhhccc-----------cccCCC
Confidence 689999999999999999965431 11110011 11111001 012246
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC--CCCeEEEeccCcccHH
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT--EEYDLLISATRGTGLA 428 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~--~~~~v~iSA~~g~gi~ 428 (505)
+.++.|+|.....+.... +...+... ...+.|.+++.||.|+........ ...++..||++|.|+.
T Consensus 48 ~~~~~v~~~~~~~s~~~~--~~~~i~~~---~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 48 DVVLQCWRVDDRDSADNK--NVPEVLVG---NKSDLPILVGGNRDVLEEERQVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred CEEEEEEEccCHHHHHHH--hHHHHHhc---CCCCCcEEEEeechhhHhhCcCCHHHHHHHHHHhCCCcchhh
Confidence 778888887766544322 33333221 112347899999999843322111 2246678999999874
No 472
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00019 Score=74.20 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=38.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~ 316 (505)
...+..++|+|++||||||||+.+.|...++.+.+.+.+.+++.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 35678999999999999999999999998889999988887654
No 473
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00016 Score=78.47 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=36.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
.+.+..+||||++|||||||+|.|.|...++.+.+.+.+.+.
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 367789999999999999999999999877888887776654
No 474
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.38 E-value=0.0002 Score=67.40 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t 315 (505)
..+.+|||+|++|||||||+|.+.|-..+..+.+...+.|.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t 64 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC
Confidence 567899999999999999999999998777777777666654
No 475
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.37 E-value=0.00038 Score=72.99 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=56.0
Q ss_pred hhhhhHHHH-HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------
Q psy50 346 PFKVTLEDA-MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------------- 411 (505)
Q Consensus 346 ~f~~tle~i-~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------------- 411 (505)
.|...+..+ ..++++++|+|+.+....- ...+.+.+ + .+|+++|+||+|+.+.....
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~-~~~l~~~~---~-----~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSL-IPELKRFV---G-----GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCc-cHHHHHHh---C-----CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 454444444 5688999999998764221 12222221 1 25899999999997643210
Q ss_pred CC---CCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 TE---EYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 ~~---~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
.. ..++++||++|.|+++|++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 01 258999999999999999999775
No 476
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.37 E-value=0.0013 Score=59.84 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=29.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
...+..++|+|++|+|||||++.|+|...+..+.+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 35678999999999999999999999875555544
No 477
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.35 E-value=0.00014 Score=75.42 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=36.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|.+|+|||||++.|+|...+..+.+.+.+.++
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357889999999999999999999999777778887777654
No 478
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.32 E-value=0.00022 Score=78.22 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=76.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ... .--..||+.+.+ .+...+ +..+
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~---~~~~i~~v~q~~-~~~~~~-tv~e 105 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP---AKA---HQLGIYLVPQEP-LLFPNL-SVKE 105 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHH---HhCCEEEEeccC-ccCCCC-cHHH
Confidence 35678999999999999999999999876667777665544321000 000 001256665544 222222 1222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+. +... . .....+.+.+++..+++....+.++ ..++.+.+++-.++ |
T Consensus 106 ~l~------~~~~--~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE--------P 167 (510)
T PRK15439 106 NIL------FGLP--K--RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE--------P 167 (510)
T ss_pred Hhh------cccc--c--chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC--------C
Confidence 221 1110 0 1112234566777776643211110 01222333333333 7
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 168 t~~LD~~~~~~l~~~l~~~~ 187 (510)
T PRK15439 168 TASLTPAETERLFSRIRELL 187 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999998864
No 479
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.0003 Score=77.07 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=79.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ... .-..+||+.+.+ .+...+ +..+
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~---~~~---~~~~i~~v~q~~-~~~~~~-tv~e 99 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH---KLA---AQLGIGIIYQEL-SVIDEL-TVLE 99 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH---HHH---HHCCeEEEeecc-cccCCC-cHHH
Confidence 35778999999999999999999999876667777665544321100 000 001356655543 222211 1223
Q ss_pred HHHhhceeE-EEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeE
Q psy50 353 DAMLADIII-HVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 353 ~i~~ADliL-~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v 417 (505)
.+..+-... ................+.+++..+++....+.+ ...++.+.+++-.++
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE-------- 171 (510)
T PRK09700 100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE-------- 171 (510)
T ss_pred HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------
Confidence 221110000 000000001112234566778877764322222 112223334333344
Q ss_pred EEeccCcccHHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l 438 (505)
|+|+++..+...+.+.|.+..
T Consensus 172 Pt~~LD~~~~~~l~~~l~~l~ 192 (510)
T PRK09700 172 PTSSLTNKEVDYLFLIMNQLR 192 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999998864
No 480
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00046 Score=68.75 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=38.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
....+.+++|||.+|||||||-+.+++...++.+.+.|.+.+.
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i 77 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI 77 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch
Confidence 3467889999999999999999999999888889998887764
No 481
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00028 Score=79.27 Aligned_cols=149 Identities=18% Similarity=0.103 Sum_probs=82.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC-CCcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT-TLLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~-~lie~f~~tl 351 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... .... .+...+||+.+.|. .+...+ ...
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~---~~~~-~~~~~i~~v~Q~~~~~l~~~~-tv~ 421 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP---GKLQ-ALRRDIQFIFQDPYASLDPRQ-TVG 421 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH---HHHH-HhcCCeEEEecCchhhcCCCC-CHH
Confidence 35778999999999999999999999976777887776655421100 0000 01123566666542 232221 122
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcc-cccCcc--------------EEEEEeCCCCCCCCCCCCCCCe
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELE-EKILEH--------------VLVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~-~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~ 416 (505)
+.+... +..+ ... ......+.+.++|+.+++. ...+++ ...++.+.+++-.++
T Consensus 422 ~~l~~~-~~~~--~~~--~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE------- 489 (623)
T PRK10261 422 DSIMEP-LRVH--GLL--PGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE------- 489 (623)
T ss_pred HHHHHH-HHHc--CCC--CHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-------
Confidence 222211 0001 110 1122234566778877773 211111 112233444444444
Q ss_pred EEEeccCcccHHHHHHHHHHHHh
Q psy50 417 LLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++......+++.|.+...
T Consensus 490 -Pts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 490 -AVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999988653
No 482
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0002 Score=78.31 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
..+..++|+|++|||||||++.|+|...+ ..+.+.+.+.++...... . ..-...|++.+.+ .+...+ ...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~--~----~~~~~i~~v~q~~-~~~~~~-tv~ 100 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR--D----TERAGIAIIHQEL-ALVKEL-SVL 100 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH--H----HHHCCeEEEEecc-ccCCCC-cHH
Confidence 46789999999999999999999998643 466666655543211000 0 0011255655543 222221 122
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v 417 (505)
+.+... ...............+.+.++++.+++....+.+ ...++.+.+++-.++
T Consensus 101 e~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE-------- 169 (506)
T PRK13549 101 ENIFLG---NEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE-------- 169 (506)
T ss_pred HHhhhc---ccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------
Confidence 222111 0000000001112234466777777764322211 011222333333333
Q ss_pred EEeccCcccHHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l 438 (505)
|+|+++..+...+.+.|.+..
T Consensus 170 Pt~~LD~~~~~~l~~~l~~l~ 190 (506)
T PRK13549 170 PTASLTESETAVLLDIIRDLK 190 (506)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 689999999999999998874
No 483
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00027 Score=71.89 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=89.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCccceeeeeeeeeeeccccCCc-ceEEEEeeeeeeecCCCCCcch
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDS-----LVPRNQLFATLDVTTHEGMLPNR-LRILYVDTIGFISNIPTTLLEP 346 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~-----~~~~d~~ftTld~t~~~~~~~~~-~~v~l~DT~Gfi~~lp~~lie~ 346 (505)
...+..++|||.+|||||++.+++.+... ...+.+.|.+.+... +... ..-+..-..+++.|.|-+....
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~----l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS----LSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc----CCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 35778999999999999999999998652 123466777665322 1111 1123455678888877443333
Q ss_pred hhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccccc----Ccc-------------EEEEEeCCCCCCCCC
Q psy50 347 FKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI----LEH-------------VLVVGNKVDAVPPGE 409 (505)
Q Consensus 347 f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~----~~p-------------~IlV~NKiDl~~~~~ 409 (505)
....-..+.++ +..|--.. ...+..+...+.|+.+|+++.. .-| .+.+.+..+++..++
T Consensus 104 v~~Ig~Qi~E~-l~~h~~~~---~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADE 179 (316)
T COG0444 104 VMTIGDQIAEV-LRLHGKGL---SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE 179 (316)
T ss_pred hhhHHHHHHHH-HHHhhcch---hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCC
Confidence 32211222111 00011000 1233456778888988886420 001 234556677777777
Q ss_pred CCCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 410 RVTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 410 ~~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|++|++-..-..+++.|.++-.
T Consensus 180 --------PTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 180 --------PTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred --------CcchhhHHHHHHHHHHHHHHHH
Confidence 8999998877777777777654
No 484
>KOG0465|consensus
Probab=97.25 E-value=0.00029 Score=76.32 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-------CCccceeeeeeee------eeec---cccCCcceEEEEeeeeeeec
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDS-------LVPRNQLFATLDV------TTHE---GMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~-------~~~~d~~ftTld~------t~~~---~~~~~~~~v~l~DT~Gfi~~ 338 (505)
+...|+++-+--|||||+-+++.-... +..++......+. |... ........+.++||||.++-
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 344678888889999999988754320 1112111111111 1110 01124678999999997641
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
.+| .-..++.-|..+.|+|+...- ..|...+...+++++. |.|..+||+|....+
T Consensus 118 ----T~E----VeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry~v------P~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 ----TFE----VERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRYNV------PRICFINKMDRMGAS 172 (721)
T ss_pred ----EEE----ehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhcCC------CeEEEEehhhhcCCC
Confidence 111 123345578889999987664 4567788888888875 899999999987654
No 485
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.24 E-value=0.00013 Score=80.08 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCccceee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD--SLVPRNQLF 309 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~--~~~~~d~~f 309 (505)
..+..++|+|++|||||||++.|+|.. .+..+.+.+
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence 567899999999999999999999984 355666554
No 486
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.23 E-value=0.00036 Score=74.20 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++||||||||+.|+|...+..+.+.+.+.++
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i 67 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV 67 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 57789999999999999999999998767777777666544
No 487
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.22 E-value=0.00064 Score=72.89 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=40.1
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHH-hcCcccccCccEEEEEeCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQ-HLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~-~lg~~~~~~~p~IlV~NKiD 403 (505)
..++++||+|.... ...+.+.+. .+..+..+|.+++|+|++... +..... ..+. .++ ..-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~-d~~lm~El~-~l~~~~~pdevlLVvda~~gq--~av~~a-~~F~~~l~-------i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL-EEDLIEEMK-EIKEAVKPDEVLLVIDATIGQ--QAKNQA-KAFHEAVG-------IGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc-hHHHHHHHH-HHHHHhcccceeEEEeccccH--HHHHHH-HHHHhcCC-------CCEEEEeccc
Confidence 47899999995432 123333333 344455689999999987642 212222 1122 122 2457889999
Q ss_pred CC
Q psy50 404 AV 405 (505)
Q Consensus 404 l~ 405 (505)
-.
T Consensus 244 ~~ 245 (437)
T PRK00771 244 GT 245 (437)
T ss_pred CC
Confidence 64
No 488
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.21 E-value=0.00013 Score=77.10 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT 311 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT 311 (505)
-..+..++|+|++|||||||+++|+|...+..+.+.+.+
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG 85 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKD 85 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 356789999999999999999999999877777777665
No 489
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00038 Score=67.00 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=34.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
.+.+..++|+|++|||||||++.|+|...+..+...+.+.+.
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l 65 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcCh
Confidence 357889999999999999999999999766666666655543
No 490
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.19 E-value=0.00023 Score=63.30 Aligned_cols=41 Identities=32% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|+|||||+++|+|...+..+.+.+...++
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~ 49 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDI 49 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEG
T ss_pred cCCCEEEEEccCCCccccceeeecccccccccccccccccc
Confidence 45779999999999999999999998755556665554443
No 491
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00033 Score=76.38 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 62 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEEC
Confidence 46789999999999999999999998766677776655543
No 492
>KOG1547|consensus
Probab=97.18 E-value=0.0022 Score=62.57 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=67.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCC------cc-ceeeeeeeeeee-ccccCC--cceEEEEeeeeeeecCCCC-Ccc
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLV------PR-NQLFATLDVTTH-EGMLPN--RLRILYVDTIGFISNIPTT-LLE 345 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~------~~-d~~ftTld~t~~-~~~~~~--~~~v~l~DT~Gfi~~lp~~-lie 345 (505)
..|.+||.+|.|||||+|.|....... .+ .++- |.++..- ...-.+ ..++.++|||||-++...+ -.+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pk-T~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPK-TTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccc-eEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 579999999999999999998653211 11 1211 2222111 111122 3567899999997764321 122
Q ss_pred hh--------hhhHH-HH----------HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 346 PF--------KVTLE-DA----------MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 346 ~f--------~~tle-~i----------~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
.+ ...+. ++ ...+++++.+..+.......+-..++-|.+. ..++-|+-|+|-+.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeeccccc
Confidence 11 11111 11 1246788888776443222121222223222 26788899999776
Q ss_pred CCC
Q psy50 407 PGE 409 (505)
Q Consensus 407 ~~~ 409 (505)
.++
T Consensus 199 leE 201 (336)
T KOG1547|consen 199 LEE 201 (336)
T ss_pred HHH
Confidence 655
No 493
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.00061 Score=73.76 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+.+++|||++||||||++..|++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 4568999999999999999999865
No 494
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.15 E-value=0.00055 Score=64.64 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f 309 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 58 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW 58 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEE
Confidence 567899999999999999999999987665555543
No 495
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.15 E-value=0.00052 Score=66.63 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=34.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 69 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL 69 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 356789999999999999999999999767777776665543
No 496
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.14 E-value=0.00053 Score=65.74 Aligned_cols=41 Identities=24% Similarity=0.135 Sum_probs=33.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 63 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 35678999999999999999999999876666766555543
No 497
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.11 E-value=0.00065 Score=62.98 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA 310 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft 310 (505)
...+..++|+|++|+|||||++.|+|...+..+.+.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~ 60 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 35778999999999999999999999875555555443
No 498
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.11 E-value=0.00073 Score=63.61 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=39.9
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
....+++-|.|.-. |..+. .....+...-.-+.++.|+|+.+-....... .....++.. --++|+||+|
T Consensus 84 ~~d~IiIE~sG~a~--p~~l~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~--~~~~~Qi~~------ADvIvlnK~D 152 (178)
T PF02492_consen 84 RPDRIIIETSGLAD--PAPLI-LQDPPLKEDFRLDSIITVVDATNFDELENIP--ELLREQIAF------ADVIVLNKID 152 (178)
T ss_dssp C-SEEEEEEECSSG--GGGHH-HHSHHHHHHESESEEEEEEEGTTHGGHTTHC--HHHHHHHCT-------SEEEEE-GG
T ss_pred CcCEEEECCccccc--cchhh-hccccccccccccceeEEeccccccccccch--hhhhhcchh------cCEEEEeccc
Confidence 35788999999543 33331 1122344445568899999996532211111 112333333 2368999999
Q ss_pred CCCCC
Q psy50 404 AVPPG 408 (505)
Q Consensus 404 l~~~~ 408 (505)
+++..
T Consensus 153 ~~~~~ 157 (178)
T PF02492_consen 153 LVSDE 157 (178)
T ss_dssp GHHHH
T ss_pred cCChh
Confidence 86543
No 499
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.09 E-value=0.00065 Score=65.39 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
..+..++|+|++|+|||||++.|+|...+..+.+.+.+.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 5678999999999999999999999876667776665544
No 500
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00066 Score=66.33 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=35.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 69 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 357789999999999999999999999877777777666543
Done!