Query psy50
Match_columns 505
No_of_seqs 512 out of 3879
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:13:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy50.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/50hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qtf_A Protein HFLX, GTP-bindi 100.0 1.1E-60 3.9E-65 496.3 25.9 322 107-440 9-354 (364)
2 3gee_A MNME, tRNA modification 99.9 8.6E-27 2.9E-31 249.6 13.5 245 165-439 133-397 (476)
3 1xzp_A Probable tRNA modificat 99.9 6E-25 2.1E-29 235.5 12.9 227 194-439 158-404 (482)
4 3geh_A MNME, tRNA modification 99.9 8.8E-25 3E-29 233.2 9.3 242 165-440 125-384 (462)
5 3iev_A GTP-binding protein ERA 99.9 1.3E-24 4.5E-29 220.3 7.9 198 275-501 9-220 (308)
6 1wf3_A GTP-binding protein; GT 99.9 1.2E-23 4.3E-28 212.6 4.8 195 276-501 7-212 (301)
7 4a9a_A Ribosome-interacting GT 99.8 9.8E-21 3.3E-25 196.5 15.6 192 241-438 33-298 (376)
8 2e87_A Hypothetical protein PH 99.8 2E-20 6.9E-25 193.1 16.0 202 233-440 119-336 (357)
9 2gj8_A MNME, tRNA modification 99.8 6.3E-21 2.2E-25 175.8 9.2 158 275-439 3-165 (172)
10 1ega_A Protein (GTP-binding pr 99.8 4.2E-22 1.5E-26 201.2 -1.5 193 276-501 8-213 (301)
11 1lnz_A SPO0B-associated GTP-bi 99.8 1.5E-20 5.1E-25 193.3 8.0 161 276-440 158-330 (342)
12 3q72_A GTP-binding protein RAD 99.8 7.4E-19 2.5E-23 158.8 14.9 153 276-440 2-164 (166)
13 2dyk_A GTP-binding protein; GT 99.8 6.9E-19 2.3E-23 158.0 13.4 152 277-438 2-160 (161)
14 3tkl_A RAS-related protein RAB 99.8 1.7E-18 5.8E-23 161.0 16.5 155 275-441 15-180 (196)
15 1mky_A Probable GTP-binding pr 99.8 2.4E-19 8.4E-24 190.0 12.2 156 277-440 2-166 (439)
16 4dhe_A Probable GTP-binding pr 99.8 3.9E-19 1.3E-23 169.3 12.4 160 274-440 27-211 (223)
17 2wji_A Ferrous iron transport 99.8 7.1E-19 2.4E-23 160.4 12.9 151 277-438 4-163 (165)
18 1z0j_A RAB-22, RAS-related pro 99.8 1.5E-18 5.2E-23 156.9 14.6 150 276-438 6-167 (170)
19 3iby_A Ferrous iron transport 99.8 1.6E-19 5.5E-24 178.3 8.6 150 277-437 2-164 (256)
20 1g16_A RAS-related protein SEC 99.8 1.5E-18 5.2E-23 156.9 14.2 152 277-440 4-165 (170)
21 3tw8_B RAS-related protein RAB 99.8 1.1E-18 3.9E-23 159.3 13.3 155 274-441 7-172 (181)
22 3cph_A RAS-related protein SEC 99.8 1.2E-18 4E-23 164.4 13.4 157 273-441 17-183 (213)
23 2nzj_A GTP-binding protein REM 99.8 1.5E-18 5.3E-23 157.8 13.6 156 276-441 4-170 (175)
24 2il1_A RAB12; G-protein, GDP, 99.8 1.7E-18 5.8E-23 161.8 14.0 152 276-440 26-190 (192)
25 2hjg_A GTP-binding protein ENG 99.8 9E-19 3.1E-23 185.5 13.3 156 276-440 3-165 (436)
26 1r2q_A RAS-related protein RAB 99.8 2E-18 6.7E-23 155.9 13.3 151 276-438 6-167 (170)
27 2efe_B Small GTP-binding prote 99.8 3.3E-18 1.1E-22 156.8 14.6 153 275-439 11-174 (181)
28 2g6b_A RAS-related protein RAB 99.8 2.9E-18 9.9E-23 157.0 14.2 155 275-440 9-174 (180)
29 3q85_A GTP-binding protein REM 99.8 2.5E-18 8.6E-23 155.8 13.3 154 277-440 3-167 (169)
30 3pqc_A Probable GTP-binding pr 99.8 1.1E-18 3.9E-23 161.5 11.0 155 274-439 21-193 (195)
31 1ek0_A Protein (GTP-binding pr 99.8 3.1E-18 1.1E-22 154.6 13.5 150 277-438 4-167 (170)
32 2y8e_A RAB-protein 6, GH09086P 99.8 2.4E-18 8E-23 156.9 12.8 150 277-438 15-175 (179)
33 1z08_A RAS-related protein RAB 99.8 2.4E-18 8E-23 155.9 12.7 152 276-439 6-168 (170)
34 2iwr_A Centaurin gamma 1; ANK 99.8 4.1E-18 1.4E-22 156.1 14.2 149 276-440 7-169 (178)
35 1z0f_A RAB14, member RAS oncog 99.8 3.5E-18 1.2E-22 155.8 13.6 153 275-439 14-177 (179)
36 2hxs_A RAB-26, RAS-related pro 99.8 1.1E-18 3.7E-23 159.6 10.1 156 275-440 5-173 (178)
37 1c1y_A RAS-related protein RAP 99.8 5.6E-18 1.9E-22 152.7 14.7 149 277-438 4-165 (167)
38 2bcg_Y Protein YP2, GTP-bindin 99.8 4.8E-18 1.6E-22 160.0 14.6 154 276-441 8-172 (206)
39 3i8s_A Ferrous iron transport 99.8 5.2E-19 1.8E-23 176.1 8.4 153 276-439 3-168 (274)
40 1zbd_A Rabphilin-3A; G protein 99.8 5.8E-18 2E-22 158.8 15.1 153 276-441 8-172 (203)
41 2gf9_A RAS-related protein RAB 99.8 4.7E-18 1.6E-22 157.9 14.2 153 276-440 22-185 (189)
42 3cbq_A GTP-binding protein REM 99.8 3.6E-18 1.2E-22 160.6 13.5 158 273-440 20-188 (195)
43 3b1v_A Ferrous iron uptake tra 99.8 1.4E-18 4.7E-23 173.2 11.2 150 276-439 3-163 (272)
44 2fu5_C RAS-related protein RAB 99.8 1.9E-18 6.6E-23 159.0 11.3 154 276-441 8-172 (183)
45 3dz8_A RAS-related protein RAB 99.8 3.1E-18 1.1E-22 159.6 12.6 154 275-441 22-187 (191)
46 2fg5_A RAB-22B, RAS-related pr 99.8 5.1E-18 1.7E-22 158.4 14.0 151 276-439 23-185 (192)
47 1kao_A RAP2A; GTP-binding prot 99.8 5.9E-18 2E-22 152.0 14.0 151 277-439 4-165 (167)
48 2ew1_A RAS-related protein RAB 99.8 2.9E-18 9.9E-23 162.4 12.5 153 276-441 26-190 (201)
49 4dsu_A GTPase KRAS, isoform 2B 99.8 8.2E-18 2.8E-22 154.9 15.1 154 276-441 4-167 (189)
50 2a5j_A RAS-related protein RAB 99.8 5E-18 1.7E-22 158.2 13.6 153 276-440 21-184 (191)
51 3bc1_A RAS-related protein RAB 99.8 7E-18 2.4E-22 155.7 14.5 154 276-441 11-186 (195)
52 2bme_A RAB4A, RAS-related prot 99.8 3.6E-18 1.2E-22 157.4 12.4 153 276-441 10-174 (186)
53 2oil_A CATX-8, RAS-related pro 99.8 6.6E-18 2.3E-22 157.2 14.2 154 275-440 24-188 (193)
54 2qu8_A Putative nucleolar GTP- 99.8 3.3E-18 1.1E-22 164.5 12.3 162 274-441 27-206 (228)
55 1upt_A ARL1, ADP-ribosylation 99.8 7.7E-18 2.6E-22 152.6 13.9 151 274-440 5-169 (171)
56 1u8z_A RAS-related protein RAL 99.8 6.3E-18 2.1E-22 152.0 13.3 151 277-439 5-166 (168)
57 3clv_A RAB5 protein, putative; 99.8 1.5E-17 5.1E-22 154.3 15.9 151 275-440 6-204 (208)
58 2hjg_A GTP-binding protein ENG 99.8 3.1E-18 1.1E-22 181.4 12.8 159 275-441 174-350 (436)
59 2fn4_A P23, RAS-related protei 99.8 7.7E-18 2.6E-22 153.8 13.7 154 275-441 8-173 (181)
60 2hup_A RAS-related protein RAB 99.8 7.2E-18 2.5E-22 159.0 13.9 154 275-441 28-194 (201)
61 2bov_A RAla, RAS-related prote 99.8 9.9E-18 3.4E-22 157.0 14.7 155 274-440 12-177 (206)
62 2f7s_A C25KG, RAS-related prot 99.8 9.4E-18 3.2E-22 159.2 14.7 153 276-441 25-200 (217)
63 1z2a_A RAS-related protein RAB 99.7 3.6E-18 1.2E-22 154.1 11.2 151 276-439 5-166 (168)
64 1x3s_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 155.1 14.8 154 276-440 15-178 (195)
65 1svi_A GTP-binding protein YSX 99.7 2.6E-18 8.7E-23 159.8 10.5 154 274-438 21-193 (195)
66 3a1s_A Iron(II) transport prot 99.7 2.4E-18 8.1E-23 170.0 10.8 153 276-439 5-166 (258)
67 3kkq_A RAS-related protein M-R 99.7 1.5E-17 5.2E-22 153.0 15.5 153 275-439 17-181 (183)
68 3oes_A GTPase rhebl1; small GT 99.7 6.5E-18 2.2E-22 158.8 13.0 156 274-441 22-188 (201)
69 1vg8_A RAS-related protein RAB 99.7 9.1E-18 3.1E-22 157.6 13.9 158 275-441 7-176 (207)
70 4dcu_A GTP-binding protein ENG 99.7 3.9E-18 1.3E-22 181.6 12.8 160 274-441 193-370 (456)
71 2erx_A GTP-binding protein DI- 99.7 5.3E-18 1.8E-22 153.3 11.8 152 276-439 3-166 (172)
72 1ky3_A GTP-binding protein YPT 99.7 7.1E-18 2.4E-22 154.2 12.7 157 275-440 7-178 (182)
73 2p5s_A RAS and EF-hand domain 99.7 6.1E-18 2.1E-22 158.7 12.5 153 275-439 27-196 (199)
74 1zj6_A ADP-ribosylation factor 99.7 1.6E-17 5.6E-22 153.9 15.0 152 274-440 14-178 (187)
75 1fzq_A ADP-ribosylation factor 99.7 9.5E-18 3.3E-22 155.4 13.2 149 274-439 14-177 (181)
76 1r8s_A ADP-ribosylation factor 99.7 1.3E-17 4.5E-22 150.3 13.7 145 278-439 2-161 (164)
77 2aka_B Dynamin-1; fusion prote 99.7 1.3E-19 4.6E-24 180.8 0.6 200 274-502 24-292 (299)
78 4bas_A ADP-ribosylation factor 99.7 8.3E-18 2.8E-22 156.6 12.7 157 274-441 15-190 (199)
79 2o52_A RAS-related protein RAB 99.7 7.6E-18 2.6E-22 158.6 12.3 154 275-440 24-188 (200)
80 2a9k_A RAS-related protein RAL 99.7 1.2E-17 4.2E-22 153.2 13.4 153 276-440 18-181 (187)
81 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.3E-17 4.5E-22 152.1 13.5 156 276-440 7-174 (177)
82 1ksh_A ARF-like protein 2; sma 99.7 1.1E-17 3.8E-22 154.5 13.0 150 275-440 17-180 (186)
83 3ihw_A Centg3; RAS, centaurin, 99.7 3E-17 1E-21 152.7 16.0 150 274-441 18-181 (184)
84 3t5g_A GTP-binding protein RHE 99.7 1.3E-17 4.6E-22 153.1 13.4 153 276-441 6-170 (181)
85 2atv_A RERG, RAS-like estrogen 99.7 1E-17 3.5E-22 156.6 12.9 154 275-441 27-192 (196)
86 4dkx_A RAS-related protein RAB 99.7 9.6E-18 3.3E-22 161.4 12.9 150 277-439 14-175 (216)
87 4djt_A GTP-binding nuclear pro 99.7 4.8E-18 1.6E-22 161.4 10.3 153 275-441 10-176 (218)
88 2cjw_A GTP-binding protein GEM 99.7 1.5E-17 5.1E-22 156.0 13.5 156 276-440 6-172 (192)
89 1jwy_B Dynamin A GTPase domain 99.7 1.7E-18 5.7E-23 174.5 7.2 197 274-502 22-298 (315)
90 1z06_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 154.5 13.1 152 275-438 19-186 (189)
91 2ce2_X GTPase HRAS; signaling 99.7 4E-17 1.4E-21 146.1 15.4 151 277-439 4-164 (166)
92 2g3y_A GTP-binding protein GEM 99.7 1.7E-17 5.8E-22 159.0 13.7 157 275-440 36-203 (211)
93 2h17_A ADP-ribosylation factor 99.7 1.2E-17 4E-22 154.3 12.0 147 275-437 20-180 (181)
94 2wjg_A FEOB, ferrous iron tran 99.7 9.1E-18 3.1E-22 155.2 11.1 154 276-440 7-169 (188)
95 1moz_A ARL1, ADP-ribosylation 99.7 1.5E-17 5.1E-22 152.8 12.4 152 274-440 16-180 (183)
96 3c5c_A RAS-like protein 12; GD 99.7 1E-17 3.5E-22 156.0 11.4 154 275-439 20-185 (187)
97 3cpj_B GTP-binding protein YPT 99.7 1E-17 3.6E-22 160.3 11.8 155 276-442 13-178 (223)
98 2gf0_A GTP-binding protein DI- 99.7 2E-17 6.8E-22 154.1 13.3 155 274-440 6-171 (199)
99 2www_A Methylmalonic aciduria 99.7 4E-18 1.4E-22 175.7 9.3 180 238-439 24-278 (349)
100 3reg_A RHO-like small GTPase; 99.7 2.6E-17 8.9E-22 153.4 13.9 152 275-440 22-188 (194)
101 4dcu_A GTP-binding protein ENG 99.7 1E-17 3.6E-22 178.3 12.5 157 275-440 22-185 (456)
102 2h57_A ADP-ribosylation factor 99.7 2.1E-17 7.1E-22 153.6 12.5 153 275-439 20-186 (190)
103 1mky_A Probable GTP-binding pr 99.7 2.1E-17 7.2E-22 175.1 14.2 159 275-441 179-356 (439)
104 3l0i_B RAS-related protein RAB 99.7 1.1E-18 3.8E-23 163.8 3.7 153 276-440 33-196 (199)
105 1f6b_A SAR1; gtpases, N-termin 99.7 2.1E-17 7.3E-22 155.5 12.5 149 275-438 24-197 (198)
106 2b6h_A ADP-ribosylation factor 99.7 5E-17 1.7E-21 152.1 15.0 150 274-439 27-190 (192)
107 3t1o_A Gliding protein MGLA; G 99.7 4.6E-17 1.6E-21 150.7 14.4 157 276-441 14-193 (198)
108 1zd9_A ADP-ribosylation factor 99.7 2.7E-17 9.3E-22 152.9 12.8 150 274-439 20-184 (188)
109 2lkc_A Translation initiation 99.7 5E-17 1.7E-21 148.4 14.2 151 273-440 5-171 (178)
110 1m2o_B GTP-binding protein SAR 99.7 3.7E-17 1.3E-21 152.8 13.6 148 275-437 22-189 (190)
111 2x77_A ADP-ribosylation factor 99.7 2.4E-17 8.3E-22 152.8 12.0 150 275-440 21-184 (189)
112 3k53_A Ferrous iron transport 99.7 8.2E-18 2.8E-22 166.8 9.1 155 276-440 3-166 (271)
113 2q3h_A RAS homolog gene family 99.7 4.4E-17 1.5E-21 152.6 13.4 154 274-441 18-196 (201)
114 3con_A GTPase NRAS; structural 99.7 4.8E-17 1.7E-21 150.7 13.1 153 277-441 22-184 (190)
115 3q3j_B RHO-related GTP-binding 99.7 3.7E-17 1.3E-21 155.9 12.6 153 274-440 25-203 (214)
116 2fh5_B SR-beta, signal recogni 99.7 8.5E-17 2.9E-21 152.3 14.8 149 275-437 6-213 (214)
117 2yc2_C IFT27, small RAB-relate 99.7 6.2E-18 2.1E-22 158.4 6.9 156 276-440 20-192 (208)
118 1mh1_A RAC1; GTP-binding, GTPa 99.7 3.2E-17 1.1E-21 150.5 10.5 151 276-440 5-180 (186)
119 2atx_A Small GTP binding prote 99.7 1.1E-16 3.7E-21 149.1 14.0 150 276-439 18-192 (194)
120 2gco_A H9, RHO-related GTP-bin 99.7 7.1E-17 2.4E-21 151.8 12.2 150 276-439 25-199 (201)
121 4gzl_A RAS-related C3 botulinu 99.7 2.1E-17 7.1E-22 156.2 8.5 151 274-438 28-203 (204)
122 3llu_A RAS-related GTP-binding 99.7 1.5E-16 5.2E-21 149.0 14.0 153 274-438 18-195 (196)
123 2fv8_A H6, RHO-related GTP-bin 99.7 9.5E-17 3.3E-21 151.7 11.8 151 276-440 25-200 (207)
124 3gj0_A GTP-binding nuclear pro 99.7 9.6E-17 3.3E-21 153.0 11.6 154 275-441 14-176 (221)
125 3bwd_D RAC-like GTP-binding pr 99.7 4.7E-17 1.6E-21 149.1 9.0 151 275-439 7-180 (182)
126 2j1l_A RHO-related GTP-binding 99.7 1.1E-16 3.9E-21 152.2 12.0 153 275-441 33-210 (214)
127 3qq5_A Small GTP-binding prote 99.7 1.4E-17 4.9E-22 175.6 6.2 156 274-440 32-196 (423)
128 2xtp_A GTPase IMAP family memb 99.7 3.1E-17 1E-21 161.0 7.7 159 275-440 21-208 (260)
129 1m7b_A RND3/RHOE small GTP-bin 99.7 1.4E-16 4.9E-21 147.3 11.8 151 275-439 6-182 (184)
130 3sjy_A Translation initiation 99.7 1.9E-16 6.6E-21 166.0 14.1 155 272-440 4-192 (403)
131 3zvr_A Dynamin-1; hydrolase, D 99.7 7.2E-18 2.5E-22 188.3 3.3 195 274-501 49-316 (772)
132 2j0v_A RAC-like GTP-binding pr 99.7 9.1E-17 3.1E-21 151.8 9.6 153 275-441 8-181 (212)
133 3lvq_E ARF-GAP with SH3 domain 99.7 1.5E-16 5.1E-21 170.8 12.4 150 275-440 321-484 (497)
134 3r7w_A Gtpase1, GTP-binding pr 99.7 1.7E-16 5.8E-21 160.4 11.7 155 276-437 3-178 (307)
135 1gwn_A RHO-related GTP-binding 99.7 3.4E-16 1.2E-20 148.5 12.4 151 275-439 27-203 (205)
136 1udx_A The GTP-binding protein 99.7 2.1E-16 7.1E-21 166.3 11.6 162 274-441 155-326 (416)
137 3o47_A ADP-ribosylation factor 99.7 3.5E-16 1.2E-20 159.8 13.0 149 275-439 164-326 (329)
138 2cxx_A Probable GTP-binding pr 99.6 6.1E-16 2.1E-20 142.6 11.4 156 277-441 2-185 (190)
139 3th5_A RAS-related C3 botulinu 99.4 1.7E-17 5.9E-22 156.1 0.0 150 275-438 29-203 (204)
140 2zej_A Dardarin, leucine-rich 99.6 7.3E-16 2.5E-20 142.9 10.9 152 277-440 3-178 (184)
141 2x2e_A Dynamin-1; nitration, h 99.6 2.5E-17 8.6E-22 169.7 0.9 199 274-501 29-296 (353)
142 3dpu_A RAB family protein; roc 99.6 1.7E-15 5.8E-20 164.4 14.9 152 274-440 39-208 (535)
143 2wkq_A NPH1-1, RAS-related C3 99.6 1.2E-15 4.2E-20 153.6 12.9 152 274-439 153-329 (332)
144 3t5d_A Septin-7; GTP-binding p 99.6 3.3E-16 1.1E-20 155.5 8.1 180 276-467 8-230 (274)
145 1wxq_A GTP-binding protein; st 99.6 4.1E-17 1.4E-21 170.9 0.4 88 278-369 2-114 (397)
146 2f9l_A RAB11B, member RAS onco 99.6 3.5E-15 1.2E-19 140.0 13.7 154 276-441 5-169 (199)
147 2j69_A Bacterial dynamin-like 99.6 2.7E-15 9.2E-20 167.6 15.1 155 275-440 68-325 (695)
148 3lxw_A GTPase IMAP family memb 99.6 1.5E-15 5E-20 148.8 9.9 160 275-440 20-208 (247)
149 3izy_P Translation initiation 99.6 2.2E-16 7.5E-21 170.9 3.8 149 275-439 3-167 (537)
150 1s0u_A EIF-2-gamma, translatio 99.6 5.4E-15 1.9E-19 155.2 13.6 153 274-440 6-198 (408)
151 3lxx_A GTPase IMAP family memb 99.6 1.1E-14 3.7E-19 141.1 14.3 162 274-440 27-214 (239)
152 3j2k_7 ERF3, eukaryotic polype 99.6 6.3E-15 2.1E-19 156.3 13.1 145 274-432 15-217 (439)
153 1oix_A RAS-related protein RAB 99.6 1.4E-14 4.7E-19 135.4 13.3 151 276-438 29-190 (191)
154 2qm8_A GTPase/ATPase; G protei 99.6 1.7E-15 5.8E-20 155.3 7.4 180 238-439 15-260 (337)
155 1kk1_A EIF2gamma; initiation o 99.6 3E-15 1E-19 157.1 9.5 153 274-440 8-200 (410)
156 2p67_A LAO/AO transport system 99.6 2E-15 6.7E-20 155.0 7.1 179 239-439 17-260 (341)
157 3c5h_A Glucocorticoid receptor 99.6 1.5E-15 5.2E-20 149.2 5.4 80 356-438 162-253 (255)
158 1pui_A ENGB, probable GTP-bind 99.6 7.1E-15 2.4E-19 138.4 9.7 156 273-439 23-198 (210)
159 1wb1_A Translation elongation 99.6 8.7E-15 3E-19 156.9 11.4 147 276-439 19-188 (482)
160 3p32_A Probable GTPase RV1496/ 99.5 7.8E-15 2.7E-19 151.2 9.0 176 243-440 44-284 (355)
161 3p26_A Elongation factor 1 alp 99.5 1.6E-14 5.4E-19 154.9 8.5 141 275-429 32-227 (483)
162 3izq_1 HBS1P, elongation facto 99.5 7.4E-15 2.5E-19 161.7 5.2 144 273-430 164-362 (611)
163 3def_A T7I23.11 protein; chlor 99.5 2.5E-13 8.5E-18 133.8 15.4 130 275-408 35-167 (262)
164 3tr5_A RF-3, peptide chain rel 99.5 2.1E-14 7.1E-19 155.5 7.9 116 276-407 13-149 (528)
165 1zo1_I IF2, translation initia 99.5 1.3E-14 4.4E-19 155.8 6.0 147 274-437 2-164 (501)
166 2ged_A SR-beta, signal recogni 99.5 9.7E-14 3.3E-18 128.6 11.1 149 246-408 22-172 (193)
167 2elf_A Protein translation elo 99.5 5.6E-14 1.9E-18 145.8 10.4 136 278-440 23-180 (370)
168 2c78_A Elongation factor TU-A; 99.5 3.7E-14 1.3E-18 148.6 8.3 149 275-439 10-211 (405)
169 3t34_A Dynamin-related protein 99.5 1.4E-13 5E-18 141.7 12.5 157 275-437 33-258 (360)
170 1g7s_A Translation initiation 99.5 6E-14 2E-18 153.8 10.1 151 275-440 4-218 (594)
171 2dby_A GTP-binding protein; GD 99.5 2E-13 6.9E-18 141.4 13.5 89 277-368 2-111 (368)
172 1jal_A YCHF protein; nucleotid 99.5 3E-13 1E-17 139.6 14.6 89 277-368 3-108 (363)
173 1h65_A Chloroplast outer envel 99.5 4.9E-13 1.7E-17 132.2 14.1 129 275-408 38-170 (270)
174 1nrj_B SR-beta, signal recogni 99.5 8.1E-14 2.8E-18 132.0 7.9 140 273-426 9-170 (218)
175 1zun_B Sulfate adenylate trans 99.4 2.3E-13 7.9E-18 143.9 11.1 139 275-429 23-213 (434)
176 3mca_A HBS1, elongation factor 99.4 1.4E-14 4.9E-19 158.9 1.5 152 274-439 175-396 (592)
177 2wsm_A Hydrogenase expression/ 99.4 1E-13 3.5E-18 131.8 7.2 168 250-439 4-213 (221)
178 1d2e_A Elongation factor TU (E 99.4 9.8E-14 3.3E-18 145.1 7.6 148 276-440 3-195 (397)
179 3cb4_D GTP-binding protein LEP 99.4 3.7E-13 1.3E-17 147.5 12.4 150 276-440 4-182 (599)
180 2ywe_A GTP-binding protein LEP 99.4 3.8E-13 1.3E-17 147.3 12.3 150 276-440 6-184 (600)
181 3r7w_B Gtpase2, GTP-binding pr 99.4 3.6E-13 1.2E-17 137.0 9.4 150 278-438 1-172 (331)
182 2qpt_A EH domain-containing pr 99.4 1.7E-12 5.7E-17 141.3 12.7 127 274-406 63-232 (550)
183 2qag_A Septin-2, protein NEDD5 99.3 5.2E-13 1.8E-17 138.0 6.2 159 275-441 36-234 (361)
184 1jny_A EF-1-alpha, elongation 99.3 7.7E-13 2.6E-17 140.0 7.4 142 275-430 5-203 (435)
185 1f60_A Elongation factor EEF1A 99.3 2.3E-13 7.9E-18 145.0 2.2 140 276-430 7-202 (458)
186 1r5b_A Eukaryotic peptide chai 99.3 1.5E-12 5.1E-17 139.0 7.7 142 275-431 42-243 (467)
187 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.3E-11 7.8E-16 126.8 15.9 93 274-368 18-127 (392)
188 2h5e_A Peptide chain release f 99.3 7.5E-12 2.6E-16 135.6 12.7 117 276-407 13-149 (529)
189 3avx_A Elongation factor TS, e 99.3 2E-12 6.9E-17 148.8 8.3 148 275-439 295-485 (1289)
190 1dar_A EF-G, elongation factor 99.3 1.6E-11 5.3E-16 137.1 15.1 117 275-407 11-144 (691)
191 1yrb_A ATP(GTP)binding protein 99.3 1.3E-12 4.5E-17 127.4 5.2 110 325-440 109-257 (262)
192 2xex_A Elongation factor G; GT 99.3 1.6E-11 5.4E-16 137.1 14.4 117 275-407 9-142 (693)
193 2hf9_A Probable hydrogenase ni 99.3 2.6E-12 8.8E-17 122.5 5.6 168 249-439 11-223 (226)
194 2dy1_A Elongation factor G; tr 99.2 2.6E-11 9E-16 134.7 12.2 116 274-405 7-139 (665)
195 2rdo_7 EF-G, elongation factor 99.2 8.2E-11 2.8E-15 131.5 15.8 119 274-407 8-149 (704)
196 2ohf_A Protein OLA1, GTP-bindi 99.1 4.5E-11 1.5E-15 124.6 7.5 92 274-368 20-128 (396)
197 3vqt_A RF-3, peptide chain rel 99.1 3.2E-10 1.1E-14 123.3 12.4 114 278-407 33-167 (548)
198 2qag_C Septin-7; cell cycle, c 99.0 2.8E-10 9.7E-15 119.6 8.6 155 277-439 32-226 (418)
199 3ec1_A YQEH GTPase; atnos1, at 99.0 1.2E-11 4E-16 128.3 -2.8 119 277-408 163-290 (369)
200 2qnr_A Septin-2, protein NEDD5 99.0 4.5E-10 1.5E-14 113.1 7.6 154 276-441 18-215 (301)
201 1tq4_A IIGP1, interferon-induc 99.0 1.1E-09 3.6E-14 115.0 9.3 152 275-440 68-253 (413)
202 3j25_A Tetracycline resistance 98.9 3.4E-10 1.2E-14 125.2 4.6 148 277-440 3-239 (638)
203 2j37_W Signal recognition part 98.9 9.1E-10 3.1E-14 118.3 4.2 151 275-437 100-310 (504)
204 3h2y_A GTPase family protein; 98.8 5.4E-10 1.8E-14 115.7 0.7 118 277-407 161-288 (368)
205 1n0u_A EF-2, elongation factor 98.8 4.2E-09 1.4E-13 119.9 7.7 115 276-405 19-163 (842)
206 4fn5_A EF-G 1, elongation fact 98.8 3E-08 1E-12 111.0 14.3 117 276-407 13-152 (709)
207 1puj_A YLQF, conserved hypothe 98.7 1E-08 3.4E-13 102.3 7.4 60 274-337 118-177 (282)
208 3sop_A Neuronal-specific septi 98.6 7.6E-08 2.6E-12 95.3 7.4 125 277-409 3-157 (270)
209 2qag_B Septin-6, protein NEDD5 98.6 1.2E-07 4E-12 99.7 8.8 126 274-409 38-193 (427)
210 3szr_A Interferon-induced GTP- 98.5 4E-07 1.4E-11 100.1 13.2 128 275-408 44-230 (608)
211 1f5n_A Interferon-induced guan 98.5 1.1E-07 3.8E-12 103.8 7.5 62 274-337 36-103 (592)
212 3dm5_A SRP54, signal recogniti 98.4 4.5E-07 1.5E-11 95.7 8.0 120 276-406 100-253 (443)
213 3cnl_A YLQF, putative uncharac 98.4 2.1E-07 7.2E-12 91.7 4.7 57 277-337 100-156 (262)
214 2v3c_C SRP54, signal recogniti 98.3 1.2E-07 4.1E-12 100.1 1.8 152 276-437 99-308 (432)
215 2yv5_A YJEQ protein; hydrolase 98.3 2.7E-07 9.1E-12 92.8 4.3 103 324-435 49-164 (302)
216 1u0l_A Probable GTPase ENGC; p 98.2 8.3E-07 2.8E-11 89.0 5.3 95 326-436 64-169 (301)
217 3e70_C DPA, signal recognition 98.2 8.6E-07 2.9E-11 90.2 5.1 144 274-430 127-310 (328)
218 1puj_A YLQF, conserved hypothe 98.2 6.3E-07 2.2E-11 89.2 3.8 92 339-439 6-105 (282)
219 1cip_A Protein (guanine nucleo 98.1 1.8E-06 6.2E-11 88.7 6.0 109 323-440 191-344 (353)
220 3tui_C Methionine import ATP-b 98.1 1.3E-07 4.5E-12 97.5 -3.0 147 273-439 51-211 (366)
221 3kl4_A SRP54, signal recogniti 98.1 9.5E-07 3.2E-11 93.1 3.4 140 275-428 96-278 (433)
222 3fvq_A Fe(3+) IONS import ATP- 98.1 8.6E-07 2.9E-11 91.2 2.3 146 274-440 28-187 (359)
223 3gfo_A Cobalt import ATP-bindi 98.1 2.8E-07 9.5E-12 91.6 -1.8 145 274-438 32-190 (275)
224 3rlf_A Maltose/maltodextrin im 98.0 1.1E-06 3.8E-11 91.0 1.5 141 274-439 27-181 (381)
225 3ohm_A Guanine nucleotide-bind 98.0 3.3E-06 1.1E-10 85.8 3.9 110 323-441 165-319 (327)
226 3ec1_A YQEH GTPase; atnos1, at 98.0 5.7E-06 1.9E-10 85.4 5.7 86 344-438 58-160 (369)
227 3h2y_A GTPase family protein; 98.0 5.7E-06 1.9E-10 85.4 5.5 86 344-438 56-158 (368)
228 1zcb_A G alpha I/13; GTP-bindi 97.9 7.6E-06 2.6E-10 84.3 6.2 107 323-440 199-353 (362)
229 2xtz_A Guanine nucleotide-bind 97.9 5E-06 1.7E-10 85.4 4.6 107 323-440 181-345 (354)
230 1vpl_A ABC transporter, ATP-bi 97.9 1.1E-06 3.7E-11 86.4 -1.3 142 273-438 38-193 (256)
231 1azs_C GS-alpha; complex (lyas 97.9 9E-06 3.1E-10 84.8 5.3 107 323-440 215-385 (402)
232 2onk_A Molybdate/tungstate ABC 97.9 1.2E-05 4.2E-10 78.0 5.6 138 274-439 23-174 (240)
233 1t9h_A YLOQ, probable GTPase E 97.8 3.1E-06 1.1E-10 85.3 1.2 61 276-337 173-236 (307)
234 1oxx_K GLCV, glucose, ABC tran 97.8 3.3E-06 1.1E-10 86.7 1.2 146 273-439 28-188 (353)
235 4g1u_C Hemin import ATP-bindin 97.8 3.6E-06 1.2E-10 83.1 1.4 41 274-314 35-75 (266)
236 2yyz_A Sugar ABC transporter, 97.8 3.1E-06 1.1E-10 87.1 0.5 141 274-439 27-181 (359)
237 1v43_A Sugar-binding transport 97.8 4E-06 1.4E-10 86.7 1.4 142 273-439 34-189 (372)
238 2it1_A 362AA long hypothetical 97.8 3.5E-06 1.2E-10 86.8 0.8 141 274-439 27-181 (362)
239 1z47_A CYSA, putative ABC-tran 97.8 3.2E-06 1.1E-10 86.8 0.5 141 274-439 39-193 (355)
240 2yv5_A YJEQ protein; hydrolase 97.8 1.5E-05 5E-10 80.0 5.1 60 276-336 165-227 (302)
241 1rj9_A FTSY, signal recognitio 97.8 5.6E-05 1.9E-09 76.0 9.2 121 275-405 101-260 (304)
242 1g29_1 MALK, maltose transport 97.8 4.9E-06 1.7E-10 86.0 1.1 145 274-439 27-187 (372)
243 1u0l_A Probable GTPase ENGC; p 97.8 1.5E-05 5.1E-10 79.8 4.5 61 276-336 169-232 (301)
244 1j8m_F SRP54, signal recogniti 97.8 0.00013 4.5E-09 73.0 11.3 120 276-405 98-252 (297)
245 2nq2_C Hypothetical ABC transp 97.7 1.9E-05 6.5E-10 77.2 4.9 133 274-438 29-175 (253)
246 2yhs_A FTSY, cell division pro 97.7 2E-05 7E-10 84.0 5.5 36 274-309 291-326 (503)
247 3cnl_A YLQF, putative uncharac 97.7 4E-06 1.4E-10 82.5 -0.1 86 340-437 5-98 (262)
248 1vma_A Cell division protein F 97.7 6.4E-05 2.2E-09 75.6 7.6 25 275-299 103-127 (306)
249 2px0_A Flagellar biosynthesis 97.7 8.2E-05 2.8E-09 74.4 8.0 117 275-405 104-252 (296)
250 4fid_A G protein alpha subunit 97.6 2.9E-05 9.9E-10 79.2 4.2 106 323-440 159-328 (340)
251 3l82_B F-box only protein 4; T 97.6 6.7E-05 2.3E-09 71.4 6.4 92 346-439 114-222 (227)
252 2rcn_A Probable GTPase ENGC; Y 97.6 2.9E-05 1E-09 79.7 4.1 60 276-337 215-280 (358)
253 3q5d_A Atlastin-1; G protein, 97.6 5.6E-05 1.9E-09 79.8 6.0 25 275-299 66-90 (447)
254 1zu4_A FTSY; GTPase, signal re 97.5 5.4E-05 1.8E-09 76.6 4.7 26 274-299 103-128 (320)
255 3tif_A Uncharacterized ABC tra 97.4 9.7E-05 3.3E-09 71.3 4.7 151 273-439 28-193 (235)
256 2pcj_A ABC transporter, lipopr 97.3 0.00011 3.9E-09 70.3 4.2 145 274-438 28-187 (224)
257 1b0u_A Histidine permease; ABC 97.3 0.00015 5.2E-09 71.1 4.8 151 273-438 29-200 (262)
258 2xxa_A Signal recognition part 97.3 0.0005 1.7E-08 72.4 8.5 22 276-297 100-121 (433)
259 1mv5_A LMRA, multidrug resista 97.3 0.00017 5.9E-09 69.8 4.6 41 274-314 26-66 (243)
260 1g6h_A High-affinity branched- 97.3 0.00016 5.4E-09 70.7 4.2 148 274-438 31-200 (257)
261 2olj_A Amino acid ABC transpor 97.3 0.00019 6.4E-09 70.6 4.7 146 273-438 47-206 (263)
262 2ffh_A Protein (FFH); SRP54, s 97.3 0.00046 1.6E-08 72.4 7.9 25 275-299 97-121 (425)
263 1ji0_A ABC transporter; ATP bi 97.2 0.00017 5.8E-09 69.8 4.2 41 274-314 30-70 (240)
264 2ff7_A Alpha-hemolysin translo 97.2 0.00017 5.7E-09 70.2 4.0 41 274-314 33-73 (247)
265 1nij_A Hypothetical protein YJ 97.2 0.00029 1E-08 70.9 6.0 26 275-300 3-28 (318)
266 3ney_A 55 kDa erythrocyte memb 97.2 0.00012 4.2E-09 68.9 2.9 60 274-336 17-77 (197)
267 1sgw_A Putative ABC transporte 97.2 0.00016 5.5E-09 68.9 3.7 41 274-314 33-73 (214)
268 3l2o_B F-box only protein 4; s 97.2 0.00032 1.1E-08 69.7 5.9 92 346-439 199-307 (312)
269 2ixe_A Antigen peptide transpo 97.2 0.00022 7.6E-09 70.3 4.6 42 273-314 42-83 (271)
270 2yz2_A Putative ABC transporte 97.2 0.00027 9.1E-09 69.5 4.7 140 273-438 30-185 (266)
271 2ihy_A ABC transporter, ATP-bi 97.2 0.00022 7.6E-09 70.7 4.1 150 274-439 45-209 (279)
272 1htw_A HI0065; nucleotide-bind 97.1 0.00049 1.7E-08 62.3 5.6 41 273-314 30-70 (158)
273 2qi9_C Vitamin B12 import ATP- 97.1 0.00027 9.2E-09 68.9 4.0 136 274-438 24-180 (249)
274 3nh6_A ATP-binding cassette SU 97.1 0.00021 7.2E-09 71.8 3.3 42 273-314 77-118 (306)
275 2pze_A Cystic fibrosis transme 97.1 0.0003 1E-08 67.6 4.2 34 274-307 32-65 (229)
276 1ls1_A Signal recognition part 97.1 0.00078 2.7E-08 67.2 7.3 25 275-299 97-121 (295)
277 2cbz_A Multidrug resistance-as 97.1 0.00028 9.5E-09 68.1 3.5 33 274-306 29-61 (237)
278 1s96_A Guanylate kinase, GMP k 97.0 0.00031 1.1E-08 67.1 3.3 41 273-313 13-55 (219)
279 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00032 1.1E-08 68.2 3.3 41 274-314 27-69 (250)
280 2zu0_C Probable ATP-dependent 97.0 0.0004 1.4E-08 68.2 3.7 42 273-314 43-86 (267)
281 2ghi_A Transport protein; mult 97.0 0.00052 1.8E-08 67.2 4.5 41 273-314 43-83 (260)
282 2pjz_A Hypothetical protein ST 96.9 0.00055 1.9E-08 67.2 4.3 40 273-314 28-67 (263)
283 1kgd_A CASK, peripheral plasma 96.9 0.00047 1.6E-08 63.2 3.5 26 275-300 4-29 (180)
284 1znw_A Guanylate kinase, GMP k 96.9 0.00045 1.5E-08 64.7 3.4 28 273-300 17-44 (207)
285 3d31_A Sulfate/molybdate ABC t 96.9 0.00044 1.5E-08 70.7 3.6 41 274-314 24-64 (348)
286 2bbs_A Cystic fibrosis transme 96.8 0.00058 2E-08 68.0 3.7 35 273-307 61-95 (290)
287 3tr0_A Guanylate kinase, GMP k 96.8 0.00064 2.2E-08 62.8 3.6 26 275-300 6-31 (205)
288 1lvg_A Guanylate kinase, GMP k 96.8 0.0005 1.7E-08 64.2 2.7 26 275-300 3-28 (198)
289 1z6g_A Guanylate kinase; struc 96.7 0.00072 2.5E-08 64.1 3.0 33 274-309 21-53 (218)
290 3tau_A Guanylate kinase, GMP k 96.7 0.0012 4.1E-08 61.9 4.4 27 274-300 6-32 (208)
291 1ye8_A Protein THEP1, hypothet 96.6 0.00086 3E-08 61.8 3.0 23 278-300 2-24 (178)
292 4dzz_A Plasmid partitioning pr 96.6 0.0052 1.8E-07 56.5 8.4 68 323-403 74-141 (206)
293 3c8u_A Fructokinase; YP_612366 96.6 0.00081 2.8E-08 63.0 2.8 28 273-300 19-46 (208)
294 1zp6_A Hypothetical protein AT 96.6 0.0011 3.9E-08 60.5 3.5 26 274-299 7-32 (191)
295 3gd7_A Fusion complex of cysti 96.6 0.0011 3.7E-08 68.8 3.7 41 273-314 44-84 (390)
296 3b5x_A Lipid A export ATP-bind 96.5 0.0017 5.7E-08 70.8 5.0 41 274-314 367-407 (582)
297 3b60_A Lipid A export ATP-bind 96.5 0.0016 5.4E-08 71.0 4.6 41 274-314 367-407 (582)
298 3a00_A Guanylate kinase, GMP k 96.5 0.0011 3.7E-08 61.0 2.7 24 277-300 2-25 (186)
299 4gp7_A Metallophosphoesterase; 96.5 0.001 3.6E-08 60.4 2.6 25 274-298 7-31 (171)
300 3qf4_B Uncharacterized ABC tra 96.5 0.0015 5.3E-08 71.4 4.1 41 274-314 379-419 (598)
301 3b85_A Phosphate starvation-in 96.4 0.0012 4E-08 62.6 2.7 32 275-307 21-52 (208)
302 2yl4_A ATP-binding cassette SU 96.4 0.0015 5.1E-08 71.4 3.9 41 274-314 368-408 (595)
303 4a82_A Cystic fibrosis transme 96.4 0.0013 4.5E-08 71.6 3.1 41 274-314 365-405 (578)
304 1t9h_A YLOQ, probable GTPase E 96.4 0.00033 1.1E-08 70.4 -1.6 76 354-434 84-171 (307)
305 3lnc_A Guanylate kinase, GMP k 96.4 0.0013 4.4E-08 62.5 2.6 27 274-300 25-52 (231)
306 3asz_A Uridine kinase; cytidin 96.3 0.0015 5.1E-08 60.8 2.8 25 275-299 5-29 (211)
307 2v9p_A Replication protein E1; 96.3 0.0018 6.1E-08 65.0 3.4 29 272-300 122-150 (305)
308 3qf4_A ABC transporter, ATP-bi 96.3 0.0018 6.2E-08 70.6 3.5 41 274-314 367-407 (587)
309 2bbw_A Adenylate kinase 4, AK4 96.3 0.0018 6.3E-08 62.1 3.1 33 275-307 26-61 (246)
310 2eyu_A Twitching motility prot 96.3 0.0018 6E-08 63.4 3.0 37 274-310 23-60 (261)
311 2j41_A Guanylate kinase; GMP, 96.2 0.0026 8.9E-08 58.6 3.7 26 275-300 5-30 (207)
312 3uie_A Adenylyl-sulfate kinase 96.2 0.0027 9.2E-08 58.9 3.7 28 273-300 22-49 (200)
313 3b9q_A Chloroplast SRP recepto 96.2 0.0014 4.7E-08 65.6 1.7 40 274-313 98-137 (302)
314 2gza_A Type IV secretion syste 96.2 0.0032 1.1E-07 64.5 4.5 35 275-309 174-208 (361)
315 3ozx_A RNAse L inhibitor; ATP 96.2 0.0026 9E-08 68.7 4.0 34 274-307 23-56 (538)
316 4eun_A Thermoresistant glucoki 96.2 0.0026 8.9E-08 59.0 3.4 25 275-299 28-52 (200)
317 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0038 1.3E-07 67.5 4.7 33 274-306 45-77 (538)
318 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.003 1E-07 63.9 3.6 35 276-310 171-205 (330)
319 3j16_B RLI1P; ribosome recycli 96.1 0.0038 1.3E-07 68.4 4.6 34 274-307 101-134 (608)
320 2ehv_A Hypothetical protein PH 96.0 0.0031 1.1E-07 59.8 3.4 24 274-297 28-51 (251)
321 2i3b_A HCR-ntpase, human cance 96.0 0.0027 9.2E-08 59.1 2.8 34 277-312 2-35 (189)
322 3aez_A Pantothenate kinase; tr 96.0 0.0028 9.6E-08 63.7 3.0 28 273-300 87-114 (312)
323 2kjq_A DNAA-related protein; s 96.0 0.0052 1.8E-07 54.7 4.4 26 275-300 35-60 (149)
324 4a74_A DNA repair and recombin 96.0 0.0024 8.2E-08 59.8 2.3 27 274-300 23-49 (231)
325 4f4c_A Multidrug resistance pr 96.0 0.0034 1.1E-07 74.8 3.9 42 274-315 1103-1144(1321)
326 3ozx_A RNAse L inhibitor; ATP 95.9 0.0046 1.6E-07 66.8 4.5 36 274-309 292-327 (538)
327 3euj_A Chromosome partition pr 95.9 0.003 1E-07 67.3 2.6 36 277-312 30-65 (483)
328 1kag_A SKI, shikimate kinase I 95.8 0.0038 1.3E-07 56.0 2.8 25 276-300 4-28 (173)
329 2jeo_A Uridine-cytidine kinase 95.8 0.0038 1.3E-07 59.9 3.0 26 274-299 23-48 (245)
330 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0053 1.8E-07 65.0 4.3 32 274-305 136-167 (460)
331 2bdt_A BH3686; alpha-beta prot 95.8 0.004 1.4E-07 56.9 2.9 22 277-298 3-24 (189)
332 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0053 1.8E-07 66.3 4.3 34 274-307 310-343 (538)
333 3bk7_A ABC transporter ATP-bin 95.8 0.0057 2E-07 67.0 4.6 33 274-306 115-147 (607)
334 2og2_A Putative signal recogni 95.8 0.0027 9.1E-08 65.2 1.7 40 274-313 155-194 (359)
335 3tqc_A Pantothenate kinase; bi 95.7 0.015 5.1E-07 58.7 7.0 26 275-300 91-116 (321)
336 1knq_A Gluconate kinase; ALFA/ 95.7 0.0047 1.6E-07 55.6 3.0 25 275-299 7-31 (175)
337 3bk7_A ABC transporter ATP-bin 95.7 0.0062 2.1E-07 66.7 4.3 34 274-307 380-413 (607)
338 2f1r_A Molybdopterin-guanine d 95.7 0.0026 8.9E-08 58.3 1.0 24 277-300 3-26 (171)
339 1sq5_A Pantothenate kinase; P- 95.7 0.0049 1.7E-07 61.6 3.1 27 274-300 78-104 (308)
340 3cwq_A Para family chromosome 95.6 0.025 8.7E-07 52.8 7.8 110 278-404 2-132 (209)
341 1p9r_A General secretion pathw 95.6 0.0048 1.7E-07 64.5 3.0 36 275-310 166-201 (418)
342 2rcn_A Probable GTPase ENGC; Y 95.6 0.011 3.8E-07 60.5 5.5 72 354-434 128-213 (358)
343 3ec2_A DNA replication protein 95.6 0.01 3.5E-07 53.7 4.6 26 275-300 37-62 (180)
344 1ixz_A ATP-dependent metallopr 95.5 0.015 5.2E-07 55.6 6.0 22 279-300 52-73 (254)
345 4b4t_L 26S protease subunit RP 95.5 0.15 5.3E-06 53.4 14.1 25 275-299 214-238 (437)
346 3jvv_A Twitching mobility prot 95.5 0.0054 1.9E-07 62.8 2.9 25 276-300 123-147 (356)
347 1np6_A Molybdopterin-guanine d 95.5 0.0073 2.5E-07 55.4 3.4 25 275-299 5-29 (174)
348 4e22_A Cytidylate kinase; P-lo 95.5 0.0083 2.8E-07 58.0 3.9 27 274-300 25-54 (252)
349 3g5u_A MCG1178, multidrug resi 95.4 0.0075 2.6E-07 71.6 4.1 41 274-314 414-454 (1284)
350 1sxj_E Activator 1 40 kDa subu 95.4 0.12 4.1E-06 51.6 12.5 24 276-299 36-59 (354)
351 2qor_A Guanylate kinase; phosp 95.4 0.0077 2.6E-07 55.9 3.3 27 274-300 10-36 (204)
352 2obl_A ESCN; ATPase, hydrolase 95.4 0.0081 2.8E-07 61.2 3.7 33 273-305 68-100 (347)
353 1cke_A CK, MSSA, protein (cyti 95.4 0.0084 2.9E-07 56.2 3.5 24 276-299 5-28 (227)
354 2ewv_A Twitching motility prot 95.4 0.0062 2.1E-07 62.6 2.8 27 274-300 134-160 (372)
355 4f4c_A Multidrug resistance pr 95.4 0.0088 3E-07 71.3 4.4 41 274-314 442-482 (1321)
356 2x8a_A Nuclear valosin-contain 95.4 0.017 5.7E-07 56.7 5.7 22 279-300 47-68 (274)
357 3end_A Light-independent proto 95.4 0.025 8.4E-07 55.9 6.9 69 323-403 155-224 (307)
358 3h4m_A Proteasome-activating n 95.3 0.044 1.5E-06 53.1 8.5 26 274-299 49-74 (285)
359 1iy2_A ATP-dependent metallopr 95.3 0.02 7E-07 55.7 6.1 22 279-300 76-97 (278)
360 2qt1_A Nicotinamide riboside k 95.2 0.0097 3.3E-07 55.2 3.4 27 274-300 19-45 (207)
361 2vp4_A Deoxynucleoside kinase; 95.2 0.0063 2.1E-07 57.8 2.0 26 274-299 18-43 (230)
362 1lw7_A Transcriptional regulat 95.2 0.0063 2.2E-07 62.1 2.2 27 276-302 170-196 (365)
363 3j16_B RLI1P; ribosome recycli 95.2 0.013 4.5E-07 64.1 4.7 30 276-305 378-407 (608)
364 2iw3_A Elongation factor 3A; a 95.2 0.0066 2.2E-07 69.8 2.4 36 274-309 697-732 (986)
365 1rz3_A Hypothetical protein rb 95.2 0.017 5.9E-07 53.5 4.9 26 274-299 20-45 (201)
366 2oap_1 GSPE-2, type II secreti 95.2 0.012 4E-07 63.2 4.2 27 276-302 260-286 (511)
367 4ido_A Atlastin-1; GTPase, GTP 95.2 0.057 2E-06 56.8 9.2 23 275-297 66-88 (457)
368 2dpy_A FLII, flagellum-specifi 95.1 0.01 3.5E-07 62.4 3.5 39 273-311 154-192 (438)
369 3vaa_A Shikimate kinase, SK; s 95.1 0.011 3.8E-07 54.6 3.4 25 275-299 24-48 (199)
370 3g5u_A MCG1178, multidrug resi 95.1 0.01 3.6E-07 70.4 3.9 41 274-314 1057-1097(1284)
371 3lw7_A Adenylate kinase relate 95.1 0.012 4.1E-07 52.0 3.3 20 277-296 2-21 (179)
372 3bfv_A CAPA1, CAPB2, membrane 95.0 0.11 3.7E-06 50.7 10.4 65 325-405 192-257 (271)
373 1ex7_A Guanylate kinase; subst 95.0 0.0099 3.4E-07 55.2 2.7 22 279-300 4-25 (186)
374 1jjv_A Dephospho-COA kinase; P 95.0 0.012 4.3E-07 54.3 3.4 22 278-299 4-25 (206)
375 1qhl_A Protein (cell division 95.0 0.0015 5.3E-08 62.7 -3.0 36 278-313 29-64 (227)
376 2if2_A Dephospho-COA kinase; a 95.0 0.011 3.9E-07 54.4 3.0 22 277-298 2-23 (204)
377 3t61_A Gluconokinase; PSI-biol 95.0 0.012 4.1E-07 54.3 3.1 25 275-299 17-41 (202)
378 2ce7_A Cell division protein F 95.0 0.14 4.9E-06 54.2 11.8 22 278-299 51-72 (476)
379 3kta_A Chromosome segregation 94.9 0.013 4.5E-07 53.0 3.2 22 278-299 28-49 (182)
380 1odf_A YGR205W, hypothetical 3 94.9 0.026 8.9E-07 56.0 5.7 27 274-300 29-55 (290)
381 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.012 4E-07 54.9 3.0 26 274-299 21-46 (235)
382 1cr0_A DNA primase/helicase; R 94.9 0.013 4.5E-07 57.6 3.4 28 273-300 32-59 (296)
383 3kb2_A SPBC2 prophage-derived 94.9 0.015 5E-07 51.7 3.4 23 277-299 2-24 (173)
384 3cf0_A Transitional endoplasmi 94.9 0.17 6E-06 49.8 11.5 27 274-300 47-73 (301)
385 4b4t_K 26S protease regulatory 94.7 0.2 6.7E-06 52.4 11.8 25 275-299 205-229 (428)
386 1bif_A 6-phosphofructo-2-kinas 94.7 0.0076 2.6E-07 63.7 1.1 24 276-299 39-62 (469)
387 3la6_A Tyrosine-protein kinase 94.7 0.1 3.6E-06 51.4 9.3 67 325-406 202-268 (286)
388 3ea0_A ATPase, para family; al 94.6 0.11 3.6E-06 49.0 8.9 67 324-404 118-184 (245)
389 2yvu_A Probable adenylyl-sulfa 94.6 0.017 5.8E-07 52.5 3.1 26 274-299 11-36 (186)
390 1m7g_A Adenylylsulfate kinase; 94.6 0.021 7.1E-07 53.3 3.7 27 273-299 22-48 (211)
391 1ly1_A Polynucleotide kinase; 94.4 0.021 7.3E-07 51.0 3.3 21 278-298 4-24 (181)
392 2pez_A Bifunctional 3'-phospho 94.4 0.019 6.3E-07 51.9 2.9 25 275-299 4-28 (179)
393 2cvh_A DNA repair and recombin 94.4 0.022 7.5E-07 52.7 3.4 26 273-298 17-42 (220)
394 1xjc_A MOBB protein homolog; s 94.4 0.024 8.3E-07 51.8 3.6 25 275-299 3-27 (169)
395 1qhx_A CPT, protein (chloramph 94.4 0.025 8.4E-07 50.8 3.6 24 277-300 4-27 (178)
396 1kht_A Adenylate kinase; phosp 94.4 0.024 8.3E-07 51.1 3.6 23 276-298 3-25 (192)
397 2rhm_A Putative kinase; P-loop 94.3 0.022 7.6E-07 51.6 3.2 24 276-299 5-28 (193)
398 3k9g_A PF-32 protein; ssgcid, 94.3 0.11 3.9E-06 49.8 8.5 66 323-403 143-208 (267)
399 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.66 2.3E-05 46.2 14.4 25 275-299 44-68 (322)
400 2jaq_A Deoxyguanosine kinase; 94.3 0.025 8.5E-07 51.6 3.5 22 278-299 2-23 (205)
401 3cm0_A Adenylate kinase; ATP-b 94.3 0.02 6.8E-07 51.8 2.7 23 276-298 4-26 (186)
402 1n0w_A DNA repair protein RAD5 94.2 0.021 7.2E-07 53.7 3.0 26 274-299 22-47 (243)
403 2v54_A DTMP kinase, thymidylat 94.2 0.031 1.1E-06 51.2 3.9 26 275-300 3-28 (204)
404 1f2t_A RAD50 ABC-ATPase; DNA d 94.2 0.027 9.1E-07 50.0 3.3 21 277-297 24-44 (149)
405 1y63_A LMAJ004144AAA protein; 94.2 0.03 1E-06 51.0 3.8 25 275-299 9-33 (184)
406 2p5t_B PEZT; postsegregational 94.2 0.035 1.2E-06 53.5 4.3 27 274-300 30-56 (253)
407 3qf7_A RAD50; ABC-ATPase, ATPa 94.1 0.024 8.3E-07 58.0 3.3 20 278-297 25-44 (365)
408 2c95_A Adenylate kinase 1; tra 94.1 0.031 1.1E-06 50.8 3.7 25 275-299 8-32 (196)
409 3kjh_A CO dehydrogenase/acetyl 94.1 0.067 2.3E-06 50.3 6.3 65 323-403 130-194 (254)
410 4b4t_J 26S protease regulatory 94.1 0.37 1.3E-05 49.9 12.2 24 276-299 182-205 (405)
411 4b4t_M 26S protease regulatory 94.1 0.37 1.3E-05 50.5 12.2 25 275-299 214-238 (434)
412 1nks_A Adenylate kinase; therm 94.1 0.027 9.3E-07 50.8 3.2 22 278-299 3-24 (194)
413 3trf_A Shikimate kinase, SK; a 94.0 0.031 1.1E-06 50.4 3.6 24 276-299 5-28 (185)
414 3vfd_A Spastin; ATPase, microt 94.0 0.33 1.1E-05 49.6 11.7 25 275-299 147-171 (389)
415 3nwj_A ATSK2; P loop, shikimat 93.9 0.026 8.7E-07 54.8 2.9 23 276-298 48-70 (250)
416 1nn5_A Similar to deoxythymidy 93.9 0.036 1.2E-06 51.1 3.8 25 275-299 8-32 (215)
417 2plr_A DTMP kinase, probable t 93.9 0.03 1E-06 51.4 3.3 24 276-299 4-27 (213)
418 3iij_A Coilin-interacting nucl 93.9 0.033 1.1E-06 50.2 3.5 25 275-299 10-34 (180)
419 2qz4_A Paraplegin; AAA+, SPG7, 93.9 0.2 6.8E-06 47.5 9.1 25 275-299 38-62 (262)
420 4b4t_I 26S protease regulatory 93.8 0.32 1.1E-05 50.8 11.1 25 275-299 215-239 (437)
421 1uf9_A TT1252 protein; P-loop, 93.8 0.033 1.1E-06 50.9 3.3 25 275-299 7-31 (203)
422 2wwf_A Thymidilate kinase, put 93.8 0.036 1.2E-06 51.1 3.5 25 275-299 9-33 (212)
423 1svm_A Large T antigen; AAA+ f 93.7 0.049 1.7E-06 56.1 4.8 28 272-299 165-192 (377)
424 1aky_A Adenylate kinase; ATP:A 93.7 0.042 1.4E-06 51.4 3.8 25 275-299 3-27 (220)
425 1in4_A RUVB, holliday junction 93.6 0.032 1.1E-06 56.0 3.1 25 276-300 51-75 (334)
426 1zd8_A GTP:AMP phosphotransfer 93.6 0.041 1.4E-06 51.8 3.5 25 275-299 6-30 (227)
427 1gtv_A TMK, thymidylate kinase 93.5 0.017 6E-07 53.3 0.9 22 278-299 2-23 (214)
428 2iw3_A Elongation factor 3A; a 93.5 0.033 1.1E-06 64.0 3.3 25 274-298 459-483 (986)
429 4aby_A DNA repair protein RECN 93.5 0.013 4.4E-07 60.4 -0.0 25 274-299 59-83 (415)
430 1tev_A UMP-CMP kinase; ploop, 93.4 0.04 1.4E-06 49.8 3.1 23 277-299 4-26 (196)
431 2bwj_A Adenylate kinase 5; pho 93.4 0.046 1.6E-06 49.7 3.5 24 276-299 12-35 (199)
432 1zak_A Adenylate kinase; ATP:A 93.4 0.043 1.5E-06 51.4 3.3 25 275-299 4-28 (222)
433 2oze_A ORF delta'; para, walke 93.3 0.27 9.3E-06 47.9 9.3 70 324-404 154-224 (298)
434 1via_A Shikimate kinase; struc 93.3 0.042 1.4E-06 49.3 3.0 23 277-299 5-27 (175)
435 1lv7_A FTSH; alpha/beta domain 93.3 0.042 1.4E-06 52.6 3.2 23 277-299 46-68 (257)
436 3cio_A ETK, tyrosine-protein k 93.3 0.24 8.4E-06 48.9 8.9 66 325-405 214-279 (299)
437 1tf7_A KAIC; homohexamer, hexa 93.3 0.023 8E-07 60.9 1.4 39 274-312 37-77 (525)
438 1vht_A Dephospho-COA kinase; s 93.2 0.047 1.6E-06 50.8 3.4 23 276-298 4-26 (218)
439 3fb4_A Adenylate kinase; psych 93.2 0.047 1.6E-06 50.7 3.3 22 278-299 2-23 (216)
440 1gvn_B Zeta; postsegregational 93.2 0.094 3.2E-06 51.7 5.6 25 275-299 32-56 (287)
441 1jbk_A CLPB protein; beta barr 93.2 0.12 4E-06 45.8 5.8 25 275-299 42-66 (195)
442 1nlf_A Regulatory protein REPA 93.2 0.04 1.4E-06 53.7 2.8 25 274-298 28-52 (279)
443 3ux8_A Excinuclease ABC, A sub 93.2 0.026 9E-07 62.3 1.7 24 274-297 346-369 (670)
444 2cdn_A Adenylate kinase; phosp 93.1 0.063 2.1E-06 49.3 4.0 24 276-299 20-43 (201)
445 2iyv_A Shikimate kinase, SK; t 93.1 0.047 1.6E-06 49.3 3.0 23 277-299 3-25 (184)
446 4eaq_A DTMP kinase, thymidylat 93.1 0.046 1.6E-06 52.0 3.0 26 275-300 25-50 (229)
447 2z0h_A DTMP kinase, thymidylat 93.0 0.053 1.8E-06 49.2 3.3 22 278-299 2-23 (197)
448 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.05 1.7E-06 52.6 3.3 24 276-299 4-27 (260)
449 3dl0_A Adenylate kinase; phosp 92.9 0.055 1.9E-06 50.3 3.3 22 278-299 2-23 (216)
450 2ze6_A Isopentenyl transferase 92.9 0.049 1.7E-06 52.6 3.0 22 278-299 3-24 (253)
451 1ukz_A Uridylate kinase; trans 92.9 0.057 1.9E-06 49.6 3.3 25 275-299 14-38 (203)
452 2ph1_A Nucleotide-binding prot 92.9 0.43 1.5E-05 45.8 9.7 67 323-404 127-194 (262)
453 2pbr_A DTMP kinase, thymidylat 92.8 0.059 2E-06 48.7 3.3 21 278-298 2-22 (195)
454 3qks_A DNA double-strand break 92.8 0.059 2E-06 50.2 3.3 21 277-297 24-44 (203)
455 3hu3_A Transitional endoplasmi 92.8 0.5 1.7E-05 50.2 10.9 25 275-299 237-261 (489)
456 2vli_A Antibiotic resistance p 92.8 0.049 1.7E-06 48.9 2.6 24 276-299 5-28 (183)
457 3cr8_A Sulfate adenylyltranfer 92.8 0.037 1.3E-06 59.8 2.1 27 274-300 367-393 (552)
458 1qf9_A UMP/CMP kinase, protein 92.8 0.063 2.2E-06 48.3 3.4 23 277-299 7-29 (194)
459 1q3t_A Cytidylate kinase; nucl 92.7 0.064 2.2E-06 50.8 3.5 26 273-298 13-38 (236)
460 1e6c_A Shikimate kinase; phosp 92.7 0.058 2E-06 47.9 3.1 23 277-299 3-25 (173)
461 2pt5_A Shikimate kinase, SK; a 92.7 0.064 2.2E-06 47.5 3.3 22 278-299 2-23 (168)
462 3syl_A Protein CBBX; photosynt 92.7 0.19 6.5E-06 49.0 7.0 26 274-299 65-90 (309)
463 3b9p_A CG5977-PA, isoform A; A 92.6 0.17 5.8E-06 49.2 6.6 26 275-300 53-78 (297)
464 3tlx_A Adenylate kinase 2; str 92.6 0.077 2.6E-06 50.8 4.0 25 275-299 28-52 (243)
465 3r20_A Cytidylate kinase; stru 92.5 0.073 2.5E-06 51.1 3.6 25 275-299 8-32 (233)
466 4b4t_H 26S protease regulatory 92.5 0.47 1.6E-05 50.0 10.1 26 274-299 241-266 (467)
467 1w1w_A Structural maintenance 92.5 0.063 2.2E-06 55.9 3.4 25 275-299 25-49 (430)
468 3be4_A Adenylate kinase; malar 92.5 0.066 2.3E-06 50.0 3.2 24 276-299 5-28 (217)
469 3d8b_A Fidgetin-like protein 1 92.4 0.36 1.2E-05 48.8 8.9 25 275-299 116-140 (357)
470 1e69_A Chromosome segregation 92.3 0.062 2.1E-06 53.7 3.0 21 278-298 26-46 (322)
471 3qkt_A DNA double-strand break 92.3 0.066 2.3E-06 53.9 3.2 22 276-297 23-44 (339)
472 3n70_A Transport activator; si 92.2 0.71 2.4E-05 40.0 9.4 25 276-300 24-48 (145)
473 4a1f_A DNAB helicase, replicat 92.2 0.22 7.4E-06 50.5 6.8 27 273-299 43-69 (338)
474 1e4v_A Adenylate kinase; trans 92.1 0.078 2.7E-06 49.3 3.2 21 278-298 2-22 (214)
475 2p65_A Hypothetical protein PF 91.9 0.16 5.3E-06 45.0 4.9 25 275-299 42-66 (187)
476 3ux8_A Excinuclease ABC, A sub 91.9 0.089 3E-06 58.1 3.8 20 274-293 42-61 (670)
477 1ak2_A Adenylate kinase isoenz 91.9 0.11 3.7E-06 49.1 3.9 25 275-299 15-39 (233)
478 3bos_A Putative DNA replicatio 91.9 0.17 5.7E-06 46.9 5.2 25 275-299 51-75 (242)
479 3umf_A Adenylate kinase; rossm 91.8 0.097 3.3E-06 49.6 3.5 26 274-299 27-52 (217)
480 2dr3_A UPF0273 protein PH0284; 91.8 0.089 3.1E-06 49.3 3.3 25 274-298 21-45 (247)
481 2xb4_A Adenylate kinase; ATP-b 91.8 0.091 3.1E-06 49.4 3.3 22 278-299 2-23 (223)
482 3ake_A Cytidylate kinase; CMP 91.8 0.085 2.9E-06 48.3 3.0 23 277-299 3-25 (208)
483 3m6a_A ATP-dependent protease 91.8 0.093 3.2E-06 56.5 3.8 25 275-299 107-131 (543)
484 1pzn_A RAD51, DNA repair and r 91.8 0.064 2.2E-06 54.5 2.3 28 273-300 128-155 (349)
485 3t15_A Ribulose bisphosphate c 91.7 0.16 5.5E-06 50.0 5.1 23 277-299 37-59 (293)
486 1fnn_A CDC6P, cell division co 91.6 0.18 6.1E-06 50.6 5.4 24 277-300 45-68 (389)
487 1uj2_A Uridine-cytidine kinase 91.6 0.096 3.3E-06 50.2 3.2 25 275-299 21-45 (252)
488 2qby_A CDC6 homolog 1, cell di 91.4 0.14 4.6E-06 51.2 4.3 26 274-299 43-68 (386)
489 1wb9_A DNA mismatch repair pro 91.4 0.096 3.3E-06 59.1 3.4 25 275-299 606-630 (800)
490 2o5v_A DNA replication and rep 91.4 0.089 3E-06 53.8 2.9 21 278-298 28-48 (359)
491 1zuh_A Shikimate kinase; alpha 91.3 0.12 4E-06 45.9 3.3 25 275-299 6-30 (168)
492 2f6r_A COA synthase, bifunctio 91.0 0.12 4E-06 50.7 3.3 23 276-298 75-97 (281)
493 3cf2_A TER ATPase, transitiona 91.0 0.67 2.3E-05 52.2 9.8 26 275-300 237-262 (806)
494 2zan_A Vacuolar protein sortin 91.0 0.75 2.6E-05 48.0 9.7 25 275-299 166-190 (444)
495 3a8t_A Adenylate isopentenyltr 91.0 0.13 4.4E-06 52.1 3.6 26 275-300 39-64 (339)
496 2w58_A DNAI, primosome compone 90.9 0.27 9.1E-06 44.9 5.4 23 277-299 55-77 (202)
497 1ewq_A DNA mismatch repair pro 90.9 0.11 3.7E-06 58.4 3.2 24 276-299 576-599 (765)
498 2qmh_A HPR kinase/phosphorylas 90.9 0.13 4.5E-06 48.3 3.3 26 275-300 33-58 (205)
499 3u61_B DNA polymerase accessor 90.9 2.6 8.9E-05 41.2 13.1 67 358-429 105-172 (324)
500 2r62_A Cell division protease 90.8 0.14 4.9E-06 49.0 3.7 22 278-299 46-67 (268)
No 1
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=100.00 E-value=1.1e-60 Score=496.29 Aligned_cols=322 Identities=25% Similarity=0.368 Sum_probs=252.6
Q ss_pred hhchHHHHHHHHHhcCCCeeEEEEEEeccCCCCcceeccchHHHHHHHHhccCCeeEEEEeCCCCCHHHHHHHHHhcCC-
Q psy50 107 RDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDVLKLHQQKMLQDLFQV- 185 (505)
Q Consensus 107 ~~~~l~E~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~v~~~~~~Ltp~Q~~nle~~~~~- 185 (505)
++++|+||.+||+|+| |+||++++|++ +|||+||||+||++||++ ..++++||+| ++|||+|.+|||+.|++
T Consensus 9 ~~~~~~e~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~g~gk~~e~~~----~~~~~~v~~~-~~l~p~q~~~l~~~~~~~ 81 (364)
T 2qtf_A 9 SKEFEEEAIALVEGAN-YKVTSIYKLPK-SPNVKFYIQYDKLQQIKN----DEEISTLIIF-EQLKPRHFINIRRELKGK 81 (364)
T ss_dssp CTTTHHHHHHHHHHTT-EEEEEEECCCS-SCBTTTBSCHHHHHHHHT----CTTCCEEEES-SCCCHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHCC-CEEEEEEEEcc-CCCCcceechhHHHHHhh----ccCCCEEEEC-CCCCHHHHHHHHHHhCCC
Confidence 4568999999999985 79999999998 999999999999999999 2588999887 79999999999999999
Q ss_pred ceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc-----c-cc-CcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy50 186 PVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI-----E-DA-TNMNITKGFLDSKRMVLMEREQKLKKALN 258 (505)
Q Consensus 186 ~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~~~-----~-~g-~~~g~ge~~~e~~rr~l~~ri~~l~~eL~ 258 (505)
+|+||+.|||+||+.||.|++||+|++||+|.|.+|||... + +| +++||||+.+|.+++.++.+|..++++|+
T Consensus 82 ~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~ 161 (364)
T 2qtf_A 82 EVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELE 161 (364)
T ss_dssp EEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHH
T ss_pred ceeehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhhhhhhHHHHhcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998432 2 34 68899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeec
Q psy50 259 KLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 259 ~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~ 338 (505)
++.+.|...|..+.+.+.+.|+|+|+||||||||+|+|++.. ..+.+++++|+|++...+.++ +..+.++||+||+.+
T Consensus 162 ~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~-g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 162 SIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPIN-NRKIMLVDTVGFIRG 239 (364)
T ss_dssp HHHC-------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEET-TEEEEEEECCCBCSS
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEEC-CEEEEEEeCCCchhc
Confidence 999988777777777778889999999999999999999987 457889999999887766654 478999999999999
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCC--hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD--YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------ 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~--~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------ 410 (505)
+|+++++.|.++++++..||++++|+|++++. ...+...+.++|..++..+ .|+++|+||+|+......
T Consensus 240 lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~---~p~ilV~NK~Dl~~~~~~~~~~~~ 316 (364)
T 2qtf_A 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG---KPILVTLNKIDKINGDLYKKLDLV 316 (364)
T ss_dssp CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS---CCEEEEEECGGGCCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC---CCEEEEEECCCCCCchHHHHHHHH
Confidence 89899999999999999999999999999886 4555667778888877644 499999999999764310
Q ss_pred ------C-C-CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 ------V-T-EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 ------~-~-~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
. . ..+++++||++|.|+++|++.|.+.+..
T Consensus 317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 0 1 1257999999999999999999998865
No 2
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.94 E-value=8.6e-27 Score=249.59 Aligned_cols=245 Identities=18% Similarity=0.215 Sum_probs=163.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchHhhhh--------ccccc-C-cCC-
Q psy50 165 FVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYR--------TIEDA-T-NMN- 233 (505)
Q Consensus 165 ~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~~rl~--------~~~~g-~-~~g- 233 (505)
|.| +.|.-.|...+-+ || +|+|..+ +++++++|.+..++.. ...+. + .++
T Consensus 133 fln-gk~dL~qaEav~d-----------li------~a~t~~~-~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf 193 (476)
T 3gee_A 133 FLN-GRIDLLQAEAIGE-----------MI------HARTESA-YRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDF 193 (476)
T ss_dssp HHT-TSSCHHHHHHHHH-----------HH------HCCSHHH-HHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSC
T ss_pred hcc-CcCcHHHHHHHHH-----------HH------hCCCHHH-HHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCC
Confidence 566 7899999988865 33 7999888 8899998877655533 22333 3 666
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 234 ITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 234 ~ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
|+|+..+.+++.+++++..++++|+++.+.+...+.. +.+.+|+|+|+||||||||+|+|++.....+.+++++|.+
T Consensus 194 ~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~---r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d 270 (476)
T 3gee_A 194 SEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV---SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRD 270 (476)
T ss_dssp CSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCEEEEEECCTTSSHHHHHHHCC----------------
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh---cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEE
Confidence 6666667899999999999999999998776444333 3467899999999999999999999876668889999988
Q ss_pred eeeeccccCCcceEEEEeeeeeeecCCCCCcchh--hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccccc
Q psy50 314 VTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF--KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391 (505)
Q Consensus 314 ~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~ 391 (505)
+....... ++.++.+|||||+.. +.+.++.+ ..++..+..||++++|+|++++....+...+..+++.+.
T Consensus 271 ~~~~~i~~-~g~~l~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----- 342 (476)
T 3gee_A 271 YIEECFIH-DKTMFRLTDTAGLRE--AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP----- 342 (476)
T ss_dssp --CEEEEE-TTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----
T ss_pred EEEEEEEE-CCeEEEEEECCCCCc--chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----
Confidence 76554443 567899999999865 44555554 456667788999999999999877654445556666654
Q ss_pred CccEEEEEeCCCCCCCCCCCC-------CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 392 LEHVLVVGNKVDAVPPGERVT-------EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 392 ~~p~IlV~NKiDl~~~~~~~~-------~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
..|+++|+||+|+........ ..+++++||++|.|+++|+++|.+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 259999999999976553210 357999999999999999999999885
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=6e-25 Score=235.55 Aligned_cols=227 Identities=24% Similarity=0.295 Sum_probs=168.3
Q ss_pred HHHHHHhhccCHHHHHHHHHHcCcchHhhhhcc--------ccc-C-cCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy50 194 VIQIFKAHAKTREARLQIAIAELPYLWTRYRTI--------EDA-T-NMN-ITKGFLDSKRMVLMEREQKLKKALNKLKG 262 (505)
Q Consensus 194 il~If~~~A~t~eaklQv~lA~l~~~~~rl~~~--------~~g-~-~~g-~ge~~~e~~rr~l~~ri~~l~~eL~~l~~ 262 (505)
|.|+. +|+|..+ +|++++++.+.++++... .+. + ..+ |+| ....+++ +..++..++.+|+.+.+
T Consensus 158 i~dli--~a~t~~~-~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l~~ 232 (482)
T 1xzp_A 158 VRDLI--EAKSETS-LKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEELK 232 (482)
T ss_dssp HHHHH--HCCSHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hhccHHH-HHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHHHH
Confidence 44443 7888777 899999998887765432 222 1 333 665 3337778 99999999999999876
Q ss_pred HHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCC
Q psy50 263 QREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTT 342 (505)
Q Consensus 263 ~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~ 342 (505)
.+...+ ..+.+.+|+|+|+||||||||+|+|++.+.+.+.+++++|.|+......+ ++.++.++||||+... +.+
T Consensus 233 ~~~~~~---~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~-~~~ 307 (482)
T 1xzp_A 233 KADAGI---LLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSE-TND 307 (482)
T ss_dssp HHHHHH---HHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSS-CCT
T ss_pred hhhhhh---hccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCcccc-chh
Confidence 664332 22356799999999999999999999987667889999999876655544 4778999999998622 345
Q ss_pred Ccchh--hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------C-C
Q psy50 343 LLEPF--KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------T-E 413 (505)
Q Consensus 343 lie~f--~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~-~ 413 (505)
.++.+ ..++..+..||++++|+|++++...... .+.+.+ . .+|+++|+||+|+....... . .
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~---~~piivV~NK~DL~~~~~~~~~~~~~~~~ 378 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI-----K---NKRYLVVINKVDVVEKINEEEIKNKLGTD 378 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH-----T---TSSEEEEEEECSSCCCCCHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh-----c---CCCEEEEEECcccccccCHHHHHHHhcCC
Confidence 55554 5578889999999999999988765433 233332 1 25999999999997542110 1 2
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.+++++||++|.|+++|+++|.+.+.
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47999999999999999999999764
No 4
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=8.8e-25 Score=233.19 Aligned_cols=242 Identities=19% Similarity=0.254 Sum_probs=168.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCceeehhhHHHHHHHhhccCHHHHHHHHHHcCcchH--------hhhhccccc--CcCCC
Q psy50 165 FVSVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLW--------TRYRTIEDA--TNMNI 234 (505)
Q Consensus 165 ~~~~~~Ltp~Q~~nle~~~~~~V~DR~~lil~If~~~A~t~eaklQv~lA~l~~~~--------~rl~~~~~g--~~~g~ 234 (505)
|.| +.|.-.|...+.+. | +|+|..+ ++.+++++.... .+|.....- ..++.
T Consensus 125 fln-gk~dL~qaEav~dl-----------i------~a~t~~~-~~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf 185 (462)
T 3geh_A 125 FLN-GRLDLTQAESIADL-----------V------GARSPQA-AQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDF 185 (462)
T ss_dssp HHT-TSCCHHHHHHHHHH-----------H------HCCSHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred Hhc-CCcCHHHHHHHHHH-----------H------hCCCHHH-HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 556 78999999888663 3 7899888 888888775543 333333322 26675
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 235 TKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 235 ge~~~e~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
.|+..+.+++.++.++..++++|+++...+...+. .+.+.+|+|+|+||||||||+|+|++.....+.+++++|.++
T Consensus 186 ~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~---~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~ 262 (462)
T 3geh_A 186 EEDLPPLDDEAIISDIENIAAEISQLLATKDKGEL---LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV 262 (462)
T ss_dssp SSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHH---HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH
T ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE
Confidence 56777788999999999999999998766643332 234578999999999999999999997655677888888876
Q ss_pred eeeccccCCcceEEEEeeeeeeecCCCCCcchh--hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccC
Q psy50 315 TTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF--KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKIL 392 (505)
Q Consensus 315 t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~ 392 (505)
....... ++.++.++||||+.. +.+.++.+ ..++..+..+|++++|+|++++..... ..+.+.+. .
T Consensus 263 ~~~~i~~-~g~~v~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~--- 330 (462)
T 3geh_A 263 VESQLVV-GGIPVQVLDTAGIRE--TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----H--- 330 (462)
T ss_dssp HHHEEEE-TTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----T---
T ss_pred EEEEEEE-CCEEEEEEECCcccc--chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----C---
Confidence 5443333 578899999999865 44555554 456667788999999999998766543 33333332 1
Q ss_pred ccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 393 EHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 393 ~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+|+++|+||+|+....... ...+++++||++|.|+++|++.|.+.+..
T Consensus 331 ~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp SCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4999999999997654321 23579999999999999999999998854
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.90 E-value=1.3e-24 Score=220.28 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=147.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CCCcchh-hhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TTLLEPF-KVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~lie~f-~~tle 352 (505)
....|+++|.||||||||+|+|++.....+.+.+.+|.+..........+.++.|+||||+..... ..+.+.| ..+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 446899999999999999999999876556777777765433322222278999999999865210 1222333 23456
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC-CCCCC----------C-CCCCeEEEe
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV-PPGER----------V-TEEYDLLIS 420 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~-~~~~~----------~-~~~~~v~iS 420 (505)
.+..+|++++|+|++++........+.+.+... ..|+++|+||+|+. ..... . .+.+++++|
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 678899999999999887665444435555543 24999999999997 33221 1 236799999
Q ss_pred ccCcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhcc
Q psy50 421 ATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFIS 500 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~ 500 (505)
|++|.|+++|++.|.+.+ +..+++|+.+.+++. +..+.+.+++|++++..+.+++||
T Consensus 163 A~~g~gv~~L~~~l~~~l-----------------~~~~~~~~~~~~td~------~~~~~~~e~irek~~~~~~~eiP~ 219 (308)
T 3iev_A 163 ALKGANLDELVKTILKYL-----------------PEGEPLFPEDMITDL------PLRLLAAEIVREKAMMLTREEVPT 219 (308)
T ss_dssp TTTTBSHHHHHHHHHHHS-----------------CBCCCSSCTTCCBCC------CHHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CCCCCCHHHHHHHHHHhC-----------------ccCCCCCCcccccCC------CHHHHHHHHHHHHHHhhhhhhcCC
Confidence 999999999999999987 344578888887774 445557889999999999999999
Q ss_pred c
Q psy50 501 S 501 (505)
Q Consensus 501 ~ 501 (505)
+
T Consensus 220 ~ 220 (308)
T 3iev_A 220 S 220 (308)
T ss_dssp H
T ss_pred e
Confidence 5
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=1.2e-23 Score=212.60 Aligned_cols=195 Identities=24% Similarity=0.260 Sum_probs=140.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcc-hh-hhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLE-PF-KVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie-~f-~~tle~ 353 (505)
..+|+|+|.||||||||+|+|++.....+.+.+.+|.+.... ....++.++.|+||||+.. +.+... .| ..+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~-i~~~~~~~l~l~DTpG~~~--~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG-ILTEGRRQIVFVDTPGLHK--PMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE-EEEETTEEEEEEECCCCCC--CCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE-EEEeCCcEEEEecCccccc--hhhHHHHHHHHHHHHH
Confidence 357999999999999999999998755556666666653221 1223578999999999864 323222 23 234566
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-C-------CCCCCeEEEeccCcc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE-R-------VTEEYDLLISATRGT 425 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~-~-------~~~~~~v~iSA~~g~ 425 (505)
+..+|++++|+|++++.... ...+.+.+.... ...|+++|+||+|+..... . ..+.+++++||++|.
T Consensus 84 l~~ad~il~VvD~~~~~~~~-~~~i~~~l~~~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE-DELVARALKPLV----GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDER 158 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH-HHHHHHHHGGGT----TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred HhcCCEEEEEEECCCCCChH-HHHHHHHHHhhc----CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCC
Confidence 78899999999999875543 344555565541 1259999999999976433 1 123468999999999
Q ss_pred cHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeE-EEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 426 GLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAV-SNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v-~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
|+++|++.|.+.+ +..+|+|+++.+ ++. +..+.+.+++|+++++.+.+++||+
T Consensus 159 gv~~l~~~l~~~l-----------------~~~~~~y~~~~~~td~------~~~~~~~e~~Re~~~~~l~~eiP~~ 212 (301)
T 1wf3_A 159 QVAELKADLLALM-----------------PEGPFFYPEDYAKSDQ------TFGEWVAEILREEAMKRLWHEVPYA 212 (301)
T ss_dssp HHHHHHHHHHTTC-----------------CBCCCSSCTTCCSBSS------CHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CHHHHHHHHHHhc-----------------ccCCCCCCcccccCCC------CHHHHHHHHHHHHHHHHhhcccCce
Confidence 9999999998776 334567877766 543 3333457888999999999999995
No 7
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.8e-21 Score=196.50 Aligned_cols=192 Identities=19% Similarity=0.163 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee
Q psy50 241 SKRMVLMEREQKLKKALNKLKGQREMMRNKK----QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316 (505)
Q Consensus 241 ~~rr~l~~ri~~l~~eL~~l~~~r~~~r~~r----~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~ 316 (505)
.-.-.++.|+++++++|....+.+...+.++ .+.+...|+|||+||||||||||+|++.. +.+.+++|+|+++..
T Consensus 33 ~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~ 111 (376)
T 4a9a_A 33 FHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVP 111 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeee
Confidence 3456788999999999987665553333222 45677899999999999999999999987 678999999999877
Q ss_pred eccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 317 HEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 317 ~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
..... .+.++.|+||||++.. ++......+.++..++.||++++|+|+++|.. +.+.+...|...+.. ...+|.+
T Consensus 112 g~~~~-~~~~i~l~D~pGl~~~-a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~-l~~k~~~ 186 (376)
T 4a9a_A 112 GVIRY-KGAKIQMLDLPGIIDG-AKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIR-LNKTPPD 186 (376)
T ss_dssp EEEEE-TTEEEEEEECGGGCCC------CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEE-ETCCCCC
T ss_pred EEEEe-CCcEEEEEeCCCccCC-chhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHh-hccCChh
Confidence 66554 4678999999999864 33333445678999999999999999998743 344455555554431 1123445
Q ss_pred EEEeCCCC-------------------------------------------------------------------CCCCC
Q psy50 397 VVGNKVDA-------------------------------------------------------------------VPPGE 409 (505)
Q Consensus 397 lV~NKiDl-------------------------------------------------------------------~~~~~ 409 (505)
+++||+|. ....+
T Consensus 187 i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~ee 266 (376)
T 4a9a_A 187 ILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEE 266 (376)
T ss_dssp EEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHH
T ss_pred hhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCHHH
Confidence 55555553 22111
Q ss_pred C---CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 410 R---VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 410 ~---~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
. ......+++|+..+.|++.|.+.+.+.|
T Consensus 267 le~l~~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 267 LELLYRIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp HHHHTTSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhhcccchhHHHHHHHHc
Confidence 0 0134689999999999999999999988
No 8
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.84 E-value=2e-20 Score=193.13 Aligned_cols=202 Identities=24% Similarity=0.244 Sum_probs=141.5
Q ss_pred CCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhcc-CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 233 NITKGFLDSKRMVLMEREQKL----KKALNKLKGQREMMRNKKQR-QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 233 g~ge~~~e~~rr~l~~ri~~l----~~eL~~l~~~r~~~r~~r~~-~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
|+++...+..++.+..++..+ +.++..+...+...+..+.. .+.++|+++|+||||||||+|+|++.. ...+++
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~ 197 (357)
T 2e87_A 119 SNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASY 197 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCC
Confidence 566667778888888887665 66777777777766665554 577899999999999999999999986 456677
Q ss_pred eeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH-HHhhceeEEEeeCCCCC--hHHHHHHHHHHHHh
Q psy50 308 LFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED-AMLADIIIHVVDVSNPD--YLQQKQHVDETLQH 384 (505)
Q Consensus 308 ~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~-i~~ADliL~VvD~s~~~--~~~~~~~v~~~L~~ 384 (505)
+++|.++....... .+..+.++||||+....+............. ...+|.+++|+|++++. .......+...+..
T Consensus 198 ~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 198 PFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp TTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred CCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 78887765543322 3578999999998754332221111111222 23589999999998765 33333334444433
Q ss_pred cCcccccCccEEEEEeCCCCCCCCCC--------CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 385 LELEEKILEHVLVVGNKVDAVPPGER--------VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 385 lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.. . ..|+++|+||+|+...... ....+++++||++|+|+++|+++|.+.+..
T Consensus 277 ~~-~---~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 277 EF-K---DLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HT-T---TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred hc-C---CCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 21 1 3599999999999754321 014579999999999999999999998854
No 9
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.83 E-value=6.3e-21 Score=175.81 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=111.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcch--hhhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEP--FKVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~--f~~tle 352 (505)
.+.+|+|+|++|||||||+|+|++.....+.+++.+|.+........ ++..+.++||||+... ....+. +..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREA--SDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCC--SSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccc--hhHHHHHHHHHHHH
Confidence 45689999999999999999999986444566666676654433333 3567899999997531 122222 234566
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---CCCCeEEEeccCcccHHH
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---~~~~~v~iSA~~g~gi~e 429 (505)
.+..+|++++|+|++++.+... ..+...+..... ...|+++|+||+|+....... ...+++++||++|.|+++
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP---AKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC---TTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHH
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc---cCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHH
Confidence 7889999999999998766542 334444443321 135999999999986432111 134789999999999999
Q ss_pred HHHHHHHHHh
Q psy50 430 LKEKVQDMIL 439 (505)
Q Consensus 430 L~~~I~~~l~ 439 (505)
|++.|.+.+.
T Consensus 156 l~~~l~~~~~ 165 (172)
T 2gj8_A 156 LRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999988763
No 10
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.82 E-value=4.2e-22 Score=201.24 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=131.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeee-ecCCCCCcchh-hhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI-SNIPTTLLEPF-KVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi-~~lp~~lie~f-~~tle~ 353 (505)
...|+|+|+||||||||+|+|++.....+.+.+.+|.+.... ....++.++.++||||+. ... ..+.+.| ..+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~g-i~~~~~~~i~~iDTpG~~~~~~-~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVG-IHTEGAYQAIYVDTPGLHMEEK-RAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEE-EEEETTEEEEEESSSSCCHHHH-HHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEE-EEEECCeeEEEEECcCCCccch-hhHHHHHHHHHHHH
Confidence 458999999999999999999998643344555555542221 122346789999999975 200 0111111 112333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC-CCC----------CCCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP-GER----------VTEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~-~~~----------~~~~~~v~iSA~ 422 (505)
+..+|++++|+|+++ ... ....+.+.+... ..|+++|+||+|+... ... .....++++||+
T Consensus 86 l~~~D~vl~Vvd~~~-~~~-~~~~i~~~l~~~------~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTP-DDEMVLNKLREG------KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CCCEEEEEEEEETTC-CCH-HHHHHHHHHHSS------SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HhcCCEEEEEEeCCC-CCH-HHHHHHHHHHhc------CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 567999999999987 333 334445555432 2499999999999762 111 112368999999
Q ss_pred CcccHHHHHHHHHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 423 RGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
+|.|+++|++.|.+.+ +..+|+|+++.+++. +..+.+.+++|+++++.+.+++||+
T Consensus 158 ~g~~v~~l~~~i~~~l-----------------~~~~~~~~~~~~~d~------~~~~~~~e~~re~l~~~l~~e~p~~ 213 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHL-----------------PEATHHFPEDYITDR------SQRFMASEIIREKLMRFLGAELPYS 213 (301)
T ss_dssp TTTTHHHHHHHHHTTC-----------------CBCCCSSCTTCCSCC------SHHHHHHHHHHHHHHHHHGGGCCTT
T ss_pred CCCCHHHHHHHHHHhC-----------------CcCCCCCCccccCCC------CHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999999999998876 334677887766553 3333456778999999999999996
No 11
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=1.5e-20 Score=193.25 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=123.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i 354 (505)
.+.|+|+|+||||||||+|+|++.. +...+++|+|++++.....+++...+.++||||++..... ...+ ...++++
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~--~~~l~~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ--GVGLGHQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC--TTTTHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc--cchhHHHHHHHH
Confidence 5689999999999999999999876 4567899999998877666665678999999998763221 1111 3346777
Q ss_pred HhhceeEEEeeCCC---CChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------CC-CCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSN---PDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------VT-EEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~---~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------~~-~~~~v~iSA~~ 423 (505)
..+|+++||+|+++ +........+...|..+.. ....+|+++|+||+|+....+. .. ..+++++||++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCC
Confidence 88999999999988 5555666667777776642 1234699999999999754221 01 15789999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
++|+++|+++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999999853
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.79 E-value=7.4e-19 Score=158.81 Aligned_cols=153 Identities=17% Similarity=0.092 Sum_probs=96.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..+|+++|.+|||||||+|+|++.......+...++.+... ........+.+|||+|.... ..+. ...+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~ 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI--VVDGEEASLMVYDIWEQDGG--RWLP------GHCMA 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE--EETTEEEEEEEEECC----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE--EECCEEEEEEEEECCCCccc--hhhh------hhhhh
Confidence 46899999999999999999998764333444444443221 11234567899999995321 1111 22356
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++|.
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHH 149 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTB
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCC
Confidence 79999999999988766555555554444321 12359999999999976544211 4679999999999
Q ss_pred cHHHHHHHHHHHHhh
Q psy50 426 GLAQLKEKVQDMILK 440 (505)
Q Consensus 426 gi~eL~~~I~~~l~~ 440 (505)
|+++++++|.+.+.+
T Consensus 150 gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 150 NVQALFEGVVRQIRL 164 (166)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.79 E-value=6.9e-19 Score=157.98 Aligned_cols=152 Identities=24% Similarity=0.204 Sum_probs=102.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~ 355 (505)
++|+++|.+|||||||+|+|++.......+...+|.+........ .+..+.++||||+.... .+...+.. ....+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGD--KWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSS--SCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCcc--chHHHHHHHHHHHHH
Confidence 579999999999999999999876444555666666554433322 35689999999975421 22333322 344567
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccHHH
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi~e 429 (505)
.+|++++|+|++++.... ...+..++...+ .|+++|+||+|+....+.. ...+++++||++|.|+++
T Consensus 79 ~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQA-DYEVAEYLRRKG------KPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEE 151 (161)
T ss_dssp TCSEEEEEEESSSCCCHH-HHHHHHHHHHHT------CCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHH
T ss_pred hCCEEEEEEECCCcccHh-HHHHHHHHHhcC------CCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHH
Confidence 899999999999875443 344555665532 4999999999997643211 123789999999999999
Q ss_pred HHHHHHHHH
Q psy50 430 LKEKVQDMI 438 (505)
Q Consensus 430 L~~~I~~~l 438 (505)
++++|.+.+
T Consensus 152 l~~~l~~~l 160 (161)
T 2dyk_A 152 LLEAIWERL 160 (161)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998765
No 14
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=160.96 Aligned_cols=155 Identities=21% Similarity=0.142 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||... ... .....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~--~~~~~ 85 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER------FRT--ITSSY 85 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG------GCT--THHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh------hhh--hHHHH
Confidence 3468999999999999999999987522 2333333444333333232 236789999999321 111 12345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTT
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 67899999999999987665555566656554322 35999999999997655421 146899999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|+++++++|.+.+.+.
T Consensus 163 g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 15
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=2.4e-19 Score=190.03 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=106.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhh-hhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFK-VTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i~ 355 (505)
++|+|||.||||||||+|+|++.....+.+.+++|.|.......+ ++..+.+|||||+....+..+.+.+. .+...+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 689999999999999999999987556788889888866554444 46689999999976432223334443 3567788
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC-C-CC------CCCCCeEEEeccCcccH
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP-G-ER------VTEEYDLLISATRGTGL 427 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~-~-~~------~~~~~~v~iSA~~g~gi 427 (505)
.||++++|+|++++.+.. ...+.++++..+ +|+++|+||+|+... . .. ....+++++||++|.|+
T Consensus 81 ~ad~il~V~D~~~~~~~~-d~~i~~~l~~~~------~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKE-DESLADFLRKST------VDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp TCSEEEEEEETTTCCCHH-HHHHHHHHHHHT------CCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 999999999998876543 345566676543 499999999998532 1 11 01236899999999999
Q ss_pred HHHHHHHHHHHhh
Q psy50 428 AQLKEKVQDMILK 440 (505)
Q Consensus 428 ~eL~~~I~~~l~~ 440 (505)
++|++.|.+.+.+
T Consensus 154 ~~L~~~i~~~l~~ 166 (439)
T 1mky_A 154 DTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999998874
No 16
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=3.9e-19 Score=169.29 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=112.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecC-CCCCcchhhh--
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNI-PTTLLEPFKV-- 349 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l-p~~lie~f~~-- 349 (505)
...++|+|+|.+|||||||+|+|++.. .....+...+|.+..........+..+.+|||||+.... +....+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999999986 345666667776654443333456789999999975421 1111222322
Q ss_pred --hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------------
Q psy50 350 --TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER----------------- 410 (505)
Q Consensus 350 --tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~----------------- 410 (505)
.+.....+|++++|+|++++.... ...+...+...+ .|+++|+||+|+......
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~~~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAPTG------KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGGGC------CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHhcC------CCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 222233388999999999875543 444556665532 499999999999764331
Q ss_pred --CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 --VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 --~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
....+++++||++|.|+++|+++|.+.+..
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 023468999999999999999999998854
No 17
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=7.1e-19 Score=160.44 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=97.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
.+|+++|++|||||||+|+|++.. ...++++..|.+........ ++..+.+|||||+..-.+....+.+....-....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 579999999999999999999875 33455666566544333322 3578999999997542221111122111111237
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-C--------CCCeEEEeccCcccH
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-T--------EEYDLLISATRGTGL 427 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-~--------~~~~v~iSA~~g~gi 427 (505)
+|++++|+|+++.. ....+...+.+. ..|+++|+||+|+....... . ..+++++||++|.|+
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCH
Confidence 99999999998642 122333334332 25999999999985432111 0 457999999999999
Q ss_pred HHHHHHHHHHH
Q psy50 428 AQLKEKVQDMI 438 (505)
Q Consensus 428 ~eL~~~I~~~l 438 (505)
++++++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.78 E-value=1.5e-18 Score=156.87 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCC-ccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLV-PRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~-~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+|+++|.+|||||||+|+|++..... ..+....+. ....... .....+.+|||||+-. .. ......
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~------~~--~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLER------FR--ALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGG------GG--GGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE--EEEEEEECCeEEEEEEEcCCCchh------hh--cccHhh
Confidence 3689999999999999999999875221 111111111 1111111 2346789999999521 11 112345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+...+.+. .|+++|+||+|+....... ...+++++||++
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~---~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS---IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 152 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT---SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC---CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 678999999999998877665566666666654333 5899999999997644321 145799999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|.|+++|++.|.+.+
T Consensus 153 ~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 153 AININELFIEISRRI 167 (170)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998876
No 19
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=1.6e-19 Score=178.26 Aligned_cols=150 Identities=24% Similarity=0.230 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC----CCcchhhhhHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT----TLLEPFKVTLE 352 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~----~lie~f~~tle 352 (505)
++|+++|.||||||||+|+|+|.. ..+++.+..|.+........ ++..+.++||||+..-.+. ...+.+....-
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999986 45677777777665544333 4568999999997653322 22222222222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccC
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATR 423 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~ 423 (505)
....+|++++|+|+++... ...+...+.+++ .|+++|+||+|+....... -..+++++||++
T Consensus 80 ~~~~~d~vi~VvDas~~~~---~~~l~~~l~~~~------~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLER---HLYLTSQLFELG------KPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHH---HHHHHHHHTTSC------SCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGG
T ss_pred hhCCCCEEEEEeeCCCchh---HHHHHHHHHHcC------CCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 2267999999999987422 333445555443 4999999999987544321 157899999999
Q ss_pred cccHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDM 437 (505)
Q Consensus 424 g~gi~eL~~~I~~~ 437 (505)
|.|+++|++.|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.78 E-value=1.5e-18 Score=156.88 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=102.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||.... ..+ ....+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~------~~~~~~ 74 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF--RTI------TTAYYR 74 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGT--SCC------CHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh--hhh------HHHHhc
Confidence 57999999999999999999987522 2222333333332222222 2467899999994321 111 234567
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~g 426 (505)
.+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++|.|
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 75 GAMGIILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN 151 (170)
T ss_dssp TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 899999999999876655455555555443222 35999999999994322210 045799999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy50 427 LAQLKEKVQDMILK 440 (505)
Q Consensus 427 i~eL~~~I~~~l~~ 440 (505)
++++++.|.+.+.+
T Consensus 152 v~~l~~~l~~~~~~ 165 (170)
T 1g16_A 152 VNEIFFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 21
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=159.35 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||... ...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~------ 77 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER--FRTITST------ 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG--CSSCCGG------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh--hhhhHHH------
Confidence 34578999999999999999999987532 2333333443333332222 236789999999432 1122222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~ 422 (505)
.+..+|++++|+|++++........+...+.... ...|+++|+||+|+........ ..+++++||+
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECC
Confidence 2456999999999998866655554554444322 2359999999999876443211 4689999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|+++++++|.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 22
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.2e-18 Score=164.43 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=105.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
.....+|+++|.+|||||||+|+|++.... ....+..+.+.........+ ...+.+|||||.... .. ...
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~------~~~ 87 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF--RT------ITT 87 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG--TC------CCH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH--HH------HHH
Confidence 345679999999999999999999987522 22223333333322222222 367999999994321 11 134
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEecc
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISAT 422 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~ 422 (505)
..+..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||+
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 164 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT---CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4567899999999999876655445555555443221 35999999999994322110 04579999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|+++++++|.+.+.+.
T Consensus 165 ~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TTBSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 23
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=157.84 Aligned_cols=156 Identities=17% Similarity=0.075 Sum_probs=99.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|++|||||||+|+|++.......+. .+.+......... ....+.+|||||..... ...+ ....+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~--~~~~~ 75 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWEAEKLD----KSWS--QESCL 75 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCC--SSSSEEEEEEEETTEEEEEEEECCC-----------CHH--HHHTT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCc--cccceeEEEEEECCEEEEEEEEecCCCCccc----hhhh--HHhhc
Confidence 46899999999999999999998763322222 1222212222222 23578999999964310 1111 12234
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 153 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQ--ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQ 153 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCC
Confidence 568999999999988766655556555554421 12359999999999976543211 357999999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+++++++|.+.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 154 HNVAELFEGVVRQLRLR 170 (175)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988543
No 24
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=161.84 Aligned_cols=152 Identities=25% Similarity=0.238 Sum_probs=103.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh-hhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK-VTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~ 353 (505)
..+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.. .+. .....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 95 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE---------RFNSITSAY 95 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH---------HHHHHHHHH
Confidence 457999999999999999999987522 1222222233332222222 24678999999932 122 23455
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~ 422 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||+
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 67899999999999887666556666666655332 35999999999997543321 14578999999
Q ss_pred CcccHHHHHHHHHHHHhh
Q psy50 423 RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~ 440 (505)
+|.|+++++++|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 25
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=9e-19 Score=185.53 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=101.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhh-hhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFK-VTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~i 354 (505)
.++|+|||.||||||||+|+|++.....+.+.+++|.|.......+ .+..+.+|||+|+..... ++.+.+. .+...+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE-PFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC----------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcch-hHHHHHHHHHHHHH
Confidence 3789999999999999999999987666788888888765544433 467899999999864322 2333443 355668
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccHH
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGLA 428 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi~ 428 (505)
..||++++|+|++++.... ...+.+.++.. .+|+++|+||+|+....... ...+++++||++|.|++
T Consensus 81 ~~ad~il~vvD~~~~~~~~-d~~~~~~l~~~------~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAA-DEEVAKILYRT------KKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp HHCSEEEEEEETTTCSCHH-HHHHHHHHTTC------CSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHH
T ss_pred HhCCEEEEEEeCCCCCCHH-HHHHHHHHHHc------CCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChH
Confidence 8899999999999876654 34556666543 25999999999987543211 12478999999999999
Q ss_pred HHHHHHHHHHhh
Q psy50 429 QLKEKVQDMILK 440 (505)
Q Consensus 429 eL~~~I~~~l~~ 440 (505)
+|+++|.+.+.+
T Consensus 154 ~L~~~i~~~l~~ 165 (436)
T 2hjg_A 154 DLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHhcCc
Confidence 999999998864
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.77 E-value=2e-18 Score=155.89 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=101.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++....... ....+.+......... ....+.+|||||... ... .....+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------~~~--~~~~~~ 76 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER------YHS--LAPMYY 76 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGG------GGG--GHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHH------hhh--hhHHhc
Confidence 358999999999999999999976422111 1111111111111122 356899999999421 111 123456
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+.....+ ..|+++|+||+|+....... ...+++++||++|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 153 (170)
T 1r2q_A 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTS 153 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 7799999999999887655555555545444322 35999999999986543221 1457899999999
Q ss_pred ccHHHHHHHHHHHH
Q psy50 425 TGLAQLKEKVQDMI 438 (505)
Q Consensus 425 ~gi~eL~~~I~~~l 438 (505)
.|+++|+++|.+.+
T Consensus 154 ~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 154 MNVNEIFMAIAKKL 167 (170)
T ss_dssp TTHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998866
No 27
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.77 E-value=3.3e-18 Score=156.76 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++..... ......+.+......... ....+.+|||||... ... .....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~--~~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------YHS--LAPMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG------GGG--GTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh------hhh--hhHHH
Confidence 34689999999999999999999875321 111111111111111122 356899999999421 111 12345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+.....+ ..|+++|+||+|+....... ...+++++||++
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKT 158 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSS
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 67799999999999887655555555555544322 35999999999997654321 145799999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|.|+++++++|.+.+.
T Consensus 159 g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 159 ATNVKEIFYEIARRLP 174 (181)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988774
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.9e-18 Score=156.97 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++............+.+......... ....+.+|||||.... ..+ ....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--~~~------~~~~ 80 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF--RSV------THAY 80 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH--HHH------HHHH
Confidence 346899999999999999999998763222222222333222211122 2357899999994321 111 1222
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+........ ..+++++||++
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (180)
T 2g6b_A 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKT 157 (180)
T ss_dssp GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 4579999999999987665545555555554322 2359999999999986543211 45899999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|+++++++|.+.+.+
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998854
No 29
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.77 E-value=2.5e-18 Score=155.76 Aligned_cols=154 Identities=18% Similarity=0.076 Sum_probs=97.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||+|...... .+.. ..+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~------~~~~ 74 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGD-HAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG-WLQD------HCLQ 74 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC---------C------HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCc-ccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch-hhhh------hhhc
Confidence 57999999999999999999976422 2222233333333332222 346788999999643110 0111 2245
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++.+......+...+..... ....|+++|+||+|+....... ...+++++||++|.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T 3q85_A 75 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 152 (169)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCC
Confidence 69999999999987665544444443333211 1135999999999987543321 14578999999999
Q ss_pred cHHHHHHHHHHHHhh
Q psy50 426 GLAQLKEKVQDMILK 440 (505)
Q Consensus 426 gi~eL~~~I~~~l~~ 440 (505)
|++++++.|.+.+..
T Consensus 153 ~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 153 NTRELFEGAVRQIRL 167 (169)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988743
No 30
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=1.1e-18 Score=161.55 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC-CCcchhhh---
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT-TLLEPFKV--- 349 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~-~lie~f~~--- 349 (505)
...++|+++|.+|||||||+|+|++.......+...+|.+.... ..+..+.++||||+...... ...+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45679999999999999999999998644445555555543321 12456889999997532110 01122222
Q ss_pred -hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCC
Q psy50 350 -TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEY 415 (505)
Q Consensus 350 -tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~ 415 (505)
.+.....+|++++|+|++++.... ...+..++...+ .|+++|+||+|+....+.. ...+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~-~~~~~~~~~~~~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDS-DLMMVEWMKSLN------IPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHTT------CCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHH-HHHHHHHHHHcC------CCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 222223449999999998765543 334556666553 4999999999997654321 1358
Q ss_pred eEEEeccCcccHHHHHHHHHHHHh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
++++||++|.|+++|+++|.+.+.
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999874
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=3.1e-18 Score=154.57 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=101.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.++||||... ... .....+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------~~~--~~~~~~~ 74 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER------FAS--LAPXYYR 74 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG------GGG--GHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChh------hhh--hhhhhhc
Confidence 47999999999999999999987522 1222222222222222222 345899999999321 111 1334567
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC---CC----------CCCCeEEEecc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE---RV----------TEEYDLLISAT 422 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~---~~----------~~~~~v~iSA~ 422 (505)
.+|++++|+|++++........+...+..... ...|+++|+||+|+..... .. ...+++++||+
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1ek0_A 75 NAQAALVVYDVTKPQSFIKARHWVKELHEQAS---KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAK 151 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred cCcEEEEEEecCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 89999999999988766555555544443321 2359999999999976521 11 04579999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy50 423 RGTGLAQLKEKVQDMI 438 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l 438 (505)
+|.|+++++++|.+.+
T Consensus 152 ~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 152 TGENVNDVFLGIGEKI 167 (170)
T ss_dssp TCTTHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.77 E-value=2.4e-18 Score=156.95 Aligned_cols=150 Identities=20% Similarity=0.186 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... .......+.+......... ....+.++||||... .. ......+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------~~--~~~~~~~~ 85 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FR--SLIPSYIR 85 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG------GG--GGSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH------HH--HHHHHHhc
Confidence 58999999999999999999976522 2222333333333322222 235799999999421 11 11234467
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++........+...+..... ...|+++|+||+|+........ ..+++++||++|.
T Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 162 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT---TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 89999999999987665444444444433211 2359999999999975443211 4679999999999
Q ss_pred cHHHHHHHHHHHH
Q psy50 426 GLAQLKEKVQDMI 438 (505)
Q Consensus 426 gi~eL~~~I~~~l 438 (505)
|+++++++|.+.+
T Consensus 163 ~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 163 NVKQLFRRVAAAL 175 (179)
T ss_dssp SHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998876
No 33
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.77 E-value=2.4e-18 Score=155.87 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||.... ..+... .+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~------~~ 76 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF--HALGPI------YY 76 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CC------SS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh--hhhHHH------Hh
Confidence 368999999999999999999977522 2222222222222222222 3457899999995321 111111 13
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+..... ...|+++|+||+|+....... ...+++++||++|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z08_A 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLG---NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG---GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 469999999999987765555555554444321 235999999999997643321 1457899999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 154 KGIEELFLDLCKRMI 168 (170)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998874
No 34
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.76 E-value=4.1e-18 Score=156.09 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=102.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++..... +..++.+......... ....+.+|||+|... ...+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------------~~~~ 70 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-------------AKFS 70 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-------------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-------------hHHH
Confidence 3589999999999999999999875321 1111111111112222 245789999999432 1345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC--CCC-----------CCCCeEEEec
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG--ERV-----------TEEYDLLISA 421 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~--~~~-----------~~~~~v~iSA 421 (505)
..+|++++|+|++++.+......+.+.+..+........|+++|+||+|+.... ... ...+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 679999999999998777666666555655422111235999999999984321 111 1357899999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
++|.|++++++.|.+.+.+
T Consensus 151 ~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 35
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.76 E-value=3.5e-18 Score=155.80 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++..... ......+.+......... ....+.+|||||... ... .....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~--~~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER------FRA--VTRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG------TCH--HHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChH------hhh--hHHHH
Confidence 34689999999999999999999875321 111111112212212222 346789999999421 111 13445
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 161 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 67899999999999886655555555555544322 35999999999996543321 145799999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|.|+++++++|.+.+.
T Consensus 162 ~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 162 GENVEDAFLEAAKKIY 177 (179)
T ss_dssp CTTHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988763
No 36
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.76 E-value=1.1e-18 Score=159.56 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC--cceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN--RLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~--~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+|+++|.+|||||||+|+|++.... ....+..+.+.........+ ...+.+|||||... ... ....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------~~~--~~~~ 75 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI------GGK--MLDK 75 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT------TCT--THHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc------ccc--hhhH
Confidence 3468999999999999999999987522 11112222333333333333 37899999999421 111 1234
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCCC----------CCCCeEEEec
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGERV----------TEEYDLLISA 421 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~~----------~~~~~v~iSA 421 (505)
.+..+|++++|+|++++.+......+...+....... ...| +++|+||+|+....... ...+++++||
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEES-ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSA 154 (178)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHH-TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 4678999999999998876555555555554431100 1135 89999999997533221 0457899999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
++|.|+++++++|.+.+.+
T Consensus 155 ~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 155 KTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp TTCTTHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998854
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=5.6e-18 Score=152.70 Aligned_cols=149 Identities=14% Similarity=0.050 Sum_probs=99.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... ..+..++.+........ .....+.+|||||... ...+ ....+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~--~~~~~~ 73 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ------FTAM--RDLYMK 73 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS------STTH--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHH------HHHH--HHHHhc
Confidence 57999999999999999999986422 22222221111111112 2356789999999432 1111 223456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCCC-----------CCCCeEEEeccC
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGERV-----------TEEYDLLISATR 423 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~~-----------~~~~~v~iSA~~ 423 (505)
.+|++++|+|++++.+......+...+... .. ...|+++|+||+|+....... ...+++++||++
T Consensus 74 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 74 NGQGFALVYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 799999999999876555444444444332 22 235999999999997543321 145799999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|.|+++++++|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998876
No 38
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.76 E-value=4.8e-18 Score=159.99 Aligned_cols=154 Identities=18% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+|+|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||... ...+.. ..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~------~~~ 78 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER--FRTITS------SYY 78 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT--TTCCCG------GGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH--HHHHHH------Hhc
Confidence 468999999999999999999987522 2222223333322222222 235899999999432 111221 224
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++|
T Consensus 79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDS 155 (206)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 5699999999999887666555555555554322 35999999999997644321 1457999999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+++++++|.+.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIKES 172 (206)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 39
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=5.2e-19 Score=176.11 Aligned_cols=153 Identities=25% Similarity=0.198 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC----CCCcchhhhhH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP----TTLLEPFKVTL 351 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp----~~lie~f~~tl 351 (505)
..+|+++|.+|||||||+|+|++.. ..+++.+.+|.+........ .+..+.++||||+..-.+ ..+.+.+...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3689999999999999999999986 45677777777665444433 356899999999765322 12222332233
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEecc
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISAT 422 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~ 422 (505)
.....+|++++|+|+++.. ....+...+.+++ .|+++|+||+|+....... ...+++++||+
T Consensus 81 ~~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~~------~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLE---RNLYLTLQLLELG------IPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHH---HHHHHHHHHHHHT------CCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCG
T ss_pred HhhcCCCEEEEEecCCChH---HHHHHHHHHHhcC------CCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcC
Confidence 3346899999999998743 2334445555544 4999999999986543211 15689999999
Q ss_pred CcccHHHHHHHHHHHHh
Q psy50 423 RGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~ 439 (505)
+|.|+++|++.|.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.76 E-value=5.8e-18 Score=158.83 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=104.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+|+|.+|||||||+|+|++.... .......+.+........ .....+.+|||||+.. +.. ....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~ 77 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER---------YRTITTAY 77 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG---------GHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchh---------hcchHHHh
Confidence 368999999999999999999987532 111111122222222222 2356899999999521 211 2334
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+........ ..+++++||++
T Consensus 78 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
T 1zbd_A 78 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 154 (203)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS---SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCC
Confidence 56799999999999887655555555555554322 359999999999976443211 45799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|+++++++|.+.+.+.
T Consensus 155 ~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 155 NINVKQTFERLVDVICEK 172 (203)
T ss_dssp TBSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 41
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=4.7e-18 Score=157.87 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... .......+.+........ .....+.+|||||.-. ...+. ...+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~------~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER--YRTIT------TAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS--SCCSG------GGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH--HhhhH------HHhc
Confidence 358999999999999999999987522 111111122222222222 2356899999999432 11121 1224
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+...... ..|+++|+||+|+........ ..+++++||++|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN 169 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 5699999999999876665555555555554322 359999999999975433211 457999999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++++++|.+.+.+
T Consensus 170 ~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 170 INVKQVFERLVDVICE 185 (189)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998765
No 42
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=160.65 Aligned_cols=158 Identities=16% Similarity=0.051 Sum_probs=104.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
.....+|+++|.+|||||||+|+|++.... ....+.++.+......... ....+.+|||+|... ....+ ..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-----~~~~~--~~ 91 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD-----AGGWL--RD 91 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG-----GGHHH--HH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc-----chhhh--HH
Confidence 345578999999999999999999865322 1222333333332222222 245788999999421 11112 12
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA 421 (505)
..+..+|++++|+|++++.+......+...+..... ....|+++|+||+|+....... ...+++++||
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa 169 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 169 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcC
Confidence 335679999999999988765545445444433211 1235999999999997643321 1357999999
Q ss_pred cCcccHHHHHHHHHHHHhh
Q psy50 422 TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~ 440 (505)
++|.|++++++.|.+.+.+
T Consensus 170 ~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 170 ALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTTBSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998854
No 43
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.76 E-value=1.4e-18 Score=173.19 Aligned_cols=150 Identities=21% Similarity=0.170 Sum_probs=105.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..+|+++|.||||||||+|+|++.. ..+++++++|.+........ +..+.+|||||+..-.+....+.+. ...+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~--~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVA--RDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHH--HHHHh
Confidence 4689999999999999999999976 45778888777654433322 6789999999975432222112221 22233
Q ss_pred --hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEeccCc
Q psy50 356 --LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISATRG 424 (505)
Q Consensus 356 --~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~~g 424 (505)
.+|++++|+|+++... ...+...+.+.+ .|+++|+||+|+........ ..+++++||++|
T Consensus 78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~~~------~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g 148 (272)
T 3b1v_A 78 SQRADSILNVVDATNLER---NLYLTTQLIETG------IPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQ 148 (272)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHTC------SCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTT
T ss_pred cCCCCEEEEEecCCchHh---HHHHHHHHHhcC------CCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCC
Confidence 5999999999987422 223444444433 49999999999864322110 468999999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.|+++|++.|.+.+.
T Consensus 149 ~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 149 TGVDQVVKKAAHTTT 163 (272)
T ss_dssp BSHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988653
No 44
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.76 E-value=1.9e-18 Score=159.03 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++... .....+..+.+......... ....+.+|||||.... ..+.. ..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~ 78 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYY 78 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CC------TTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh--hhhHH------HHH
Confidence 46899999999999999999997642 22222333333332222222 2368999999995321 11111 124
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+......+...+...... ..|+++|+||+|+........ ..+++++||++|
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 155 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 5699999999999887655555555555443222 359999999999976433211 457999999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|+++++++|.+.+.+.
T Consensus 156 ~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 156 INVENAFFTLARDIKAK 172 (183)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888653
No 45
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.1e-18 Score=159.55 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=108.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhh-hhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFK-VTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle 352 (505)
...+|+|+|.+|||||||+|+|++.... .......+.+........ .....+.+|||||.. .+. ....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~ 91 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFT-PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE---------RYRTITTA 91 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTC-CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH---------HCHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCC-cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHHHHHH
Confidence 4578999999999999999999986522 112222222222222221 245789999999932 221 2344
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~ 422 (505)
.+..+|++++|+|++++........+...+...... ..|+++|+||+|+........ ..+++++||+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence 567899999999999887666556666666654432 359999999999865433211 4579999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|++++++.|.+.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 46
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.1e-18 Score=158.39 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=104.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC-Cccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSL-VPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~-~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+|+++|.+|||||||+|+|++.... ...+....+.. ...... .....+.+|||||... ... .....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~------~~~--~~~~~ 92 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNELHKFLIWDTAGQER------FHS--LAPMY 92 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSSEEEEEEEEECCSGG------GGG--GTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCEEEEEEEEcCCCchh------hHh--hhHHh
Confidence 468999999999999999999987522 11222222221 111111 2456899999999421 111 13345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 169 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTT
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 67899999999999987766566666666554322 35999999999997533221 145789999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|.|+++|+++|.+.+.
T Consensus 170 ~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 170 AINIEELFQGISRQIP 185 (192)
T ss_dssp TBSHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988764
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=5.9e-18 Score=152.04 Aligned_cols=151 Identities=18% Similarity=0.096 Sum_probs=99.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|++|||||||+|+|++.... .....++.+......... ....+.++||||... ...+ ....+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~--~~~~~~ 73 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ------FASM--RDLYIK 73 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC------CHHH--HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchh------hHHH--HHHHhc
Confidence 57999999999999999999976522 122222211111111122 245689999999321 1111 233466
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~ 425 (505)
.+|.+++|+|++++........+...+..... ....|+++|+||+|+........ ..+++++||++|.
T Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (167)
T 1kao_A 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKT 151 (167)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCc
Confidence 79999999999987665544444433333211 12359999999999875433211 4579999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy50 426 GLAQLKEKVQDMIL 439 (505)
Q Consensus 426 gi~eL~~~I~~~l~ 439 (505)
|+++++++|.+.+.
T Consensus 152 gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 152 MVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998774
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.9e-18 Score=162.45 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.. .+.. ....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 95 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE---------RFRSITQSY 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 468999999999999999999986522 2222222333332222222 23578999999932 1211 2233
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+........ ..+++++||++
T Consensus 96 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 172 (201)
T 2ew1_A 96 YRSANALILTYDITCEESFRCLPEWLREIEQYAS---NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 172 (201)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 5679999999999988765555555555555432 2359999999999975433211 46799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|+++++++|.+.+.+.
T Consensus 173 g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLISE 190 (201)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999888653
No 49
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=8.2e-18 Score=154.95 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=103.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++... ...+..++.+........ .....+.+|||||... ...+ ....+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~--~~~~~ 73 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAM--RDQYM 73 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---------CTT--HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH------HHHH--HHHHH
Confidence 35799999999999999999998752 233333333222222222 2234578899999432 1111 22345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEeccCcc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISATRGT 425 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~~g~ 425 (505)
..+|++++|+|++++........+...+..... ....|+++|+||+|+........ ..+++++||++|.
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD--SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 679999999999988766555555555544321 12359999999999975432111 4689999999999
Q ss_pred cHHHHHHHHHHHHhhh
Q psy50 426 GLAQLKEKVQDMILKA 441 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~ 441 (505)
|+++++++|.+.+.+.
T Consensus 152 gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 152 GVDDAFYTLVREIRKH 167 (189)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 50
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=5e-18 Score=158.15 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||... ...+ ....+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~------~~~~~ 91 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES--FRSI------TRSYY 91 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGG--TSCC------CHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchh--hhhh------HHHHh
Confidence 358999999999999999999987532 2222222333322222222 246889999999432 1111 23456
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+...... ..|+++|+||+|+........ ..+++++||++|
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 168 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 7799999999999876655555555555443222 359999999999965433211 457899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++++++|.+.+.+
T Consensus 169 ~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 169 CNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988765
No 51
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=7e-18 Score=155.70 Aligned_cols=154 Identities=20% Similarity=0.173 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee-eeccccCC----------cceEEEEeeeeeeecCCCCCc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT-THEGMLPN----------RLRILYVDTIGFISNIPTTLL 344 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t-~~~~~~~~----------~~~v~l~DT~Gfi~~lp~~li 344 (505)
..+|+|+|.+|||||||+|+|++.... .......+.+.. .......+ ...+.++||||..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------- 81 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE-------- 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG--------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH--------
Confidence 468999999999999999999986522 111111122221 11111111 4689999999942
Q ss_pred chhhh-hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CC
Q psy50 345 EPFKV-TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TE 413 (505)
Q Consensus 345 e~f~~-tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~ 413 (505)
.+.. ....+..+|++++|+|++++........+...+..... ....|+++|+||+|+....... ..
T Consensus 82 -~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 158 (195)
T 3bc1_A 82 -RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG 158 (195)
T ss_dssp -GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 2221 33446779999999999988765544455554443321 1235999999999997543321 04
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
.+++++||++|.|+++++++|.+.+.+.
T Consensus 159 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 159 IPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988653
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.76 E-value=3.6e-18 Score=157.42 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=105.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~ 353 (505)
..+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.. .+.. ....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 79 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---------RFRSVTRSY 79 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHH
Confidence 468999999999999999999987532 2222233333332222222 23588999999932 1211 2233
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++
T Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (186)
T 2bme_A 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALT 156 (186)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCC
Confidence 56799999999999877655455555555444322 35999999999996543321 145799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|+++++++|.+.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 157 GENVEEAFVQCARKILNK 174 (186)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999888653
No 53
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=157.18 Aligned_cols=154 Identities=21% Similarity=0.137 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+|+|.+|||||||+|+|++...... .....+.+........ .....+.+|||||+.. ... .....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~--~~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER------YRA--ITSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT------TCT--THHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchh------hhh--hhHHH
Confidence 346899999999999999999998753211 1111112222111111 2456889999999532 111 12344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+....... ...+++++||++
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE---ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALD 171 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 6789999999999987665444445444443321 235999999999997643321 145799999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|+++++++|.+.+.+
T Consensus 172 ~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 172 STNVELAFETVLKEIFA 188 (193)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 54
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.75 E-value=3.3e-18 Score=164.54 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcc-hhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLE-PFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie-~f~~tle 352 (505)
...++|+|+|.+|||||||+|+|++... ...+..++|.+........ .+..+.+|||||+.......... .+.....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 3567999999999999999999998763 2455666666654433222 35789999999975311001000 0221122
Q ss_pred HHHhhceeEEEeeCCCCChHH--HHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC-------------C--CC
Q psy50 353 DAMLADIIIHVVDVSNPDYLQ--QKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT-------------E--EY 415 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~--~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~-------------~--~~ 415 (505)
....+|++++|+|++++.... ....+...+.... ...|+++|+||+|+........ . .+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF----SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh----cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 256689999999999876543 1122333333321 1359999999999976543210 2 57
Q ss_pred eEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
++++||++|.|+++++++|.+.+.+.
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999988643
No 55
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=7.7e-18 Score=152.62 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
+...+|+++|.+|||||||+|+|++..... . ..|...+...... ++..+.+|||||.... ..+. ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~--~~~~------~~~ 71 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT--T--IPTIGFNVETVTY-KNLKFQVWDLGGLTSI--RPYW------RCY 71 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC--C--CCCSSEEEEEEEE-TTEEEEEEEECCCGGG--GGGG------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC--c--CCcCccceEEEEE-CCEEEEEEECCCChhh--hHHH------HHH
Confidence 355789999999999999999998765321 1 1222222222222 3678999999995321 0111 123
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHH-HHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHV-DETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v-~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~i 419 (505)
+..+|++++|+|++++........+ ..++..... ...|+++|+||+|+....... ...+++++
T Consensus 72 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 72 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL---RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh---CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 4579999999999988765433332 333332211 235999999999997653210 02368999
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
||++|.|+++++++|.+.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999998753
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.75 E-value=6.3e-18 Score=152.01 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=100.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++... ..++..++.+......... ....+.++||||... ...+ ....+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~--~~~~~~ 74 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED------YAAI--RDNYFR 74 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------CHHH--HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch------hHHH--HHHHhh
Confidence 5799999999999999999998752 2222222222211112222 345789999999432 1111 234466
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCcc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRGT 425 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g~ 425 (505)
.+|++++|+|++++........+...+..... ....|+++|+||+|+........ ..+++++||++|.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 75 SGEGFLCVFSITEMESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRA 152 (168)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 79999999999988765544444444433211 11359999999999976433211 4579999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy50 426 GLAQLKEKVQDMIL 439 (505)
Q Consensus 426 gi~eL~~~I~~~l~ 439 (505)
|+++++++|.+.+.
T Consensus 153 gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 153 NVDKVFFDLMREIR 166 (168)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=1.5e-17 Score=154.27 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=100.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-------------------------------
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN------------------------------- 323 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~------------------------------- 323 (505)
...+|+++|.+|||||||+|+|++.... .......+.+.........+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4578999999999999999999987522 11111111111111111111
Q ss_pred -------cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE
Q psy50 324 -------RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 324 -------~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
...+.+|||||... .. ..+...+..+|++++|+|++++........+...+.... ..|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~------~~--~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQER------YA--SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGG------CT--TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEE
T ss_pred cccCccceeEEEEEECCCcHH------HH--HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEE
Confidence 16899999999432 11 113445678999999999998876554444444444321 15999
Q ss_pred EEEeCCCCCCCCCCC----------CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 397 VVGNKVDAVPPGERV----------TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 397 lV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+|+||+| ....... ...+++++||++|.|+++++++|.+.+.+
T Consensus 152 lv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 152 LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999 3222211 14579999999999999999999988764
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=3.1e-18 Score=181.39 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CCCcchhh--hhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TTLLEPFK--VTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~lie~f~--~tl 351 (505)
...+|+++|+||||||||+|+|++.....+.++..+|.+........ ++..+.+|||||+..... .+.++.|. .++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 45799999999999999999999987655778888888764433333 456799999999865332 23345553 345
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------------CCCCe
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------------TEEYD 416 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------------~~~~~ 416 (505)
..+..||++++|+|++++.+... ..+...+...+ +|+++|+||+|+....... ...++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~-~~~~~~~~~~~------~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAG------KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTT------CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHH-HHHHHHHHHcC------CcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 67889999999999999876543 34555554433 4999999999998654310 14589
Q ss_pred EEEeccCcccHHHHHHHHHHHHhhh
Q psy50 417 LLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+++||++|.|+++|++.+.+.+...
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887653
No 59
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=7.7e-18 Score=153.78 Aligned_cols=154 Identities=15% Similarity=0.042 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ..++..++.+......... ....+.+|||||... ...+ ....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~------~~~~ 77 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE--FGAM------REQY 77 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT--TSCC------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchh--hHHH------HHHH
Confidence 346899999999999999999998742 2233333222211112222 235788999999432 1111 1234
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHH-HhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETL-QHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L-~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~ 422 (505)
+..+|++++|+|++++........+...+ ..... ...|+++|+||+|+....... ...+++++||+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK 154 (181)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 56799999999999876655444444333 33322 235999999999997644321 14579999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|+++++++|.+.+.+.
T Consensus 155 ~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 60
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=159.03 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=103.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
...+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.. .+.. ...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---------RFRTITQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG---------GGHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH---------hHHHHHHH
Confidence 3468999999999999999999987522 1111111222222222222 23689999999942 2222 334
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCC-CeEEEec
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEE-YDLLISA 421 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~-~~v~iSA 421 (505)
.+..+|++++|+|++++........+...+..... ...|+++|+||+|+....... ... +++++||
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG---SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence 56789999999999987665545555555544332 235999999999997533221 134 7899999
Q ss_pred cCcccHHHHHHHHHHHHhhh
Q psy50 422 TRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 422 ~~g~gi~eL~~~I~~~l~~~ 441 (505)
++|.|+++++++|.+.+.+.
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988654
No 61
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=156.97 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=105.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+|+|.+|||||||+|+|++... ..++..++.+......... ....+.+|||||... ...+ ...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~--~~~ 81 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED------YAAI--RDN 81 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC------CHHH--HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh------hHHH--HHH
Confidence 3457899999999999999999998752 2333333332222222222 235789999999421 1111 234
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~ 422 (505)
.+..+|++++|+|++++........+...+..... ....|+++|+||+|+........ ..+++++||+
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence 46679999999999988765555555444443321 12359999999999976433211 4579999999
Q ss_pred CcccHHHHHHHHHHHHhh
Q psy50 423 RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~ 440 (505)
+|.|+++++++|.+.+.+
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998865
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=9.4e-18 Score=159.24 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=104.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-----------cceEEEEeeeeeeecCCCCCc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-----------RLRILYVDTIGFISNIPTTLL 344 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-----------~~~v~l~DT~Gfi~~lp~~li 344 (505)
..+|+|+|.+|||||||+|+|++.... .......+.+.......... ...+.+|||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH--------
Confidence 468999999999999999999987532 22222222222222222221 4679999999932
Q ss_pred chhh-hhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccc-ccCccEEEEEeCCCCCCCCCCC----------C
Q psy50 345 EPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE-KILEHVLVVGNKVDAVPPGERV----------T 412 (505)
Q Consensus 345 e~f~-~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~-~~~~p~IlV~NKiDl~~~~~~~----------~ 412 (505)
.+. .....+..+|++++|+|++++..... +..++..+.... ....|+++|+||+|+....... .
T Consensus 96 -~~~~~~~~~~~~~d~iilV~D~~~~~s~~~---~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~ 171 (217)
T 2f7s_A 96 -RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN---VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY 171 (217)
T ss_dssp -HHHHHHHHHHTTCCEEEEEEETTCHHHHHH---HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred -hHHhHHHHHhcCCCEEEEEEECcCHHHHHH---HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC
Confidence 222 23455778999999999998765443 334555443211 1346999999999997543321 1
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
..+++++||++|.|+++++++|.+.+.+.
T Consensus 172 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 172 GIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999987653
No 63
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=3.6e-18 Score=154.09 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=101.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||... ...+ ....+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~------~~~~~ 75 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE--FDAI------TKAYY 75 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG--TTCC------CHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh--HHHH------HHHHh
Confidence 468999999999999999999987522 1112222222222222222 246899999999432 1111 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
..+|++++|+|++++.+......+...+.... ...|+++|+||+|+........ ..+++++||++|
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (168)
T 1z2a_A 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKED 151 (168)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCC
Confidence 67999999999998765544444444443321 2359999999999976433211 457999999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.|+++++++|.+.+.
T Consensus 152 ~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 152 LNVSEVFKYLAEKHL 166 (168)
T ss_dssp BSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=155.08 Aligned_cols=154 Identities=20% Similarity=0.172 Sum_probs=103.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||... ... .....+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~--~~~~~~ 85 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER------FRT--LTPSYY 85 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG------GCC--SHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh------hhh--hhHHHh
Confidence 368999999999999999999987522 1222222222222222222 356899999999432 111 123456
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCcc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGT 425 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~ 425 (505)
..+|++++|+|++++........+...+..... ....|+++|+||+|+....... ...+++++||++|.
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCD 163 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 789999999999987665544445444443321 1236999999999995432110 14578999999999
Q ss_pred cHHHHHHHHHHHHhh
Q psy50 426 GLAQLKEKVQDMILK 440 (505)
Q Consensus 426 gi~eL~~~I~~~l~~ 440 (505)
|+++++++|.+.+.+
T Consensus 164 gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQ 178 (195)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998854
No 65
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=2.6e-18 Score=159.83 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=99.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecC-CCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNI-PTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l-p~~lie~f~~tl 351 (505)
.+.++|+++|.+|||||||+|+|++.. .....+...+|.+..... .+..+.+|||||+.... +....+.+....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE----ECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 457899999999999999999999875 233344445555433221 13478999999975321 111123333222
Q ss_pred -HHHHhh---ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCC
Q psy50 352 -EDAMLA---DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEE 414 (505)
Q Consensus 352 -e~i~~A---DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~ 414 (505)
..+..+ |++++|+|++++..... ..+..++...+ .|+++|+||+|+....+.. ...
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYYG------IPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTT------CCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHH-HHHHHHHHHcC------CCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 223444 99999999998766543 33455555432 4999999999997654320 135
Q ss_pred CeEEEeccCcccHHHHHHHHHHHH
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
+++++||++|.|+++|+++|.+.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHHh
Confidence 799999999999999999998876
No 66
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=2.4e-18 Score=170.02 Aligned_cols=153 Identities=24% Similarity=0.196 Sum_probs=106.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..+|+++|.||||||||+|+|++.. ..+++.+..|.+........ .+..+.+|||||+..-.+...-+.+....-...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 3689999999999999999999976 34666776776654433322 367899999999765333222222211111124
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~~g~g 426 (505)
.+|++++|+|+++.... ..+...+.+.+ .|+++|+||+|+........ ..+++++||++|.|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~~~------~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILEME------KKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHTTT------CCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTT
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHhcC------CCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcC
Confidence 79999999999986432 22344444433 49999999999864332111 56899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy50 427 LAQLKEKVQDMIL 439 (505)
Q Consensus 427 i~eL~~~I~~~l~ 439 (505)
+++|++.|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998774
No 67
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=1.5e-17 Score=152.99 Aligned_cols=153 Identities=14% Similarity=0.080 Sum_probs=101.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++.... .++..++.+........ .....+.+|||||... ...+ ....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~--~~~~ 86 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE------FSAM--REQY 86 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG------GCSS--HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchh------hHHH--HHHH
Confidence 4568999999999999999999976422 22222221111111111 2234567899999422 1111 2334
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc-
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT- 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~- 422 (505)
+..+|++++|+|++++.+......+...+.... .....|+++|+||+|+........ ..+++++||+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 164 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK--DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 164 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCC
Confidence 667999999999998866554554544443321 112359999999999976443211 4689999999
Q ss_pred CcccHHHHHHHHHHHHh
Q psy50 423 RGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~ 439 (505)
+|.|++++++.|.+.+.
T Consensus 165 ~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SCBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998874
No 68
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=158.83 Aligned_cols=156 Identities=20% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+|+|.+|||||||+|+|++.... ..+..++.+........ .....+.+|||||... ...+...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~------ 91 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE--YSILPYS------ 91 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCT--TCCCCGG------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccc--hHHHHHH------
Confidence 34578999999999999999999987632 22222222111111111 2457789999999432 1122222
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEecc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISAT 422 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~ 422 (505)
.+..+|++++|+|++++........+...+.... .....|+++|+||+|+........ ..+++++||+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 169 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH--GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence 2456999999999998876655555554444321 112359999999999875543211 4679999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|++++++.|.+.+.+.
T Consensus 170 ~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988653
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.75 E-value=9.1e-18 Score=157.56 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+|+|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.... ..+... .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~------~ 77 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF--QSLGVA------F 77 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG--SCSCCG------G
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH--HHhHHH------H
Confidence 4568999999999999999999987532 2222222333333332222 3468999999995321 122222 2
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCC----------CCCCCeEEEecc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGER----------VTEEYDLLISAT 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~----------~~~~~~v~iSA~ 422 (505)
+..+|++++|+|++++........+...+... ........|+++|+||+|+...... ....+++++||+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred HhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCC
Confidence 45699999999999876655444444433322 1111123599999999999743221 114579999999
Q ss_pred CcccHHHHHHHHHHHHhhh
Q psy50 423 RGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~~ 441 (505)
+|.|+++++++|.+.+.+.
T Consensus 158 ~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 70
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=3.9e-18 Score=181.61 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC-CCCcchhh--hh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP-TTLLEPFK--VT 350 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp-~~lie~f~--~t 350 (505)
....+|+++|.+|+|||||+|+|++.....+.+++++|.+........ ++..+.+|||||+..... ....+.|. .+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 456789999999999999999999887666788888888765443333 456899999999865322 22345553 35
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------------CCCC
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------------TEEY 415 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------------~~~~ 415 (505)
+..+..||++++|+|++++... +...+...+...+ +|+++|+||+|+....... ...+
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~~~------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHEAG------KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHTT------CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHHcC------CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 6678899999999999987654 4556666666543 4999999999998654320 1468
Q ss_pred eEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
++++||++|.|+++|++.|.+.+...
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.3e-18 Score=153.33 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=100.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee-cccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH-EGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~-~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+|+++|.+|||||||+|+|++.... ..+. .|...+.. .... .....+.++||||... .... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------~~~~--~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ESYI-PTVEDTYRQVISCDKSICTLQITDTTGSHQ------FPAM--QRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SSCC-CCSCEEEEEEEEETTEEEEEEEEECCSCSS------CHHH--HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCC-CCccccEEEEEEECCEEEEEEEEECCCchh------hHHH--HHHh
Confidence 357999999999999999999986522 1111 11111111 1111 2345789999999431 1111 2344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+..... .....|+++|+||+|+........ ..+++++||++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 150 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKL 150 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCC
Confidence 6679999999999987665544555555544321 112359999999999976443211 45789999999
Q ss_pred cccHHHHHHHHHHHHh
Q psy50 424 GTGLAQLKEKVQDMIL 439 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~ 439 (505)
|.|+++++++|.+.+.
T Consensus 151 ~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 151 NHNVKELFQELLNLEK 166 (172)
T ss_dssp TBSHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988763
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.75 E-value=7.1e-18 Score=154.17 Aligned_cols=157 Identities=19% Similarity=0.174 Sum_probs=100.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--CcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--NRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||.... ..+. ..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~------~~ 77 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF--QSLG------VA 77 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh--hhhh------HH
Confidence 4578999999999999999999987522 2222223333333333232 2467899999994321 1111 12
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCC------------CCCCCeEEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGER------------VTEEYDLLI 419 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~------------~~~~~~v~i 419 (505)
.+..+|++++|+|++++........+...+... +.......|+++|+||+|+...... ....+++++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~ 157 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLT 157 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEE
T ss_pred HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 245699999999999887655444444433322 2111234699999999999643221 114579999
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
||++|.|+++++++|.+.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 158 SAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 73
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=158.75 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=100.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.. . ... .....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~-~~~--~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE-----R-FRS--IAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCT-----T-CHH--HHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCc-----c-hhh--hHHHH
Confidence 4578999999999999999999987522 1111111222222222222 34678999999932 1 111 13445
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC------CCCCC----------CCCCeE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP------PGERV----------TEEYDL 417 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~------~~~~~----------~~~~~v 417 (505)
+..+|++++|+|++++........+...+...... ..|+++|+||+|+.. ..... ...+++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE---TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 67899999999999887665555566555554322 359999999999862 11111 045789
Q ss_pred EEeccCcccHHHHHHHHHHHHh
Q psy50 418 LISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
++||++|.|+++++++|.+.+.
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 74
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.6e-17 Score=153.92 Aligned_cols=152 Identities=21% Similarity=0.165 Sum_probs=102.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
+...+|+++|.+|||||||+|+|++.... ....|.+.+...... ++..+.+|||||... ... .....
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~------~~~--~~~~~ 80 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV----HTSPTIGSNVEEIVI-NNTRFLMWDIGGQES------LRS--SWNTY 80 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE----EEECCSCSSCEEEEE-TTEEEEEEECCC----------CG--GGHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC----cCcCCCccceEEEEE-CCEEEEEEECCCCHh------HHH--HHHHH
Confidence 35679999999999999999999976532 122333333322222 468899999999632 111 12344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
+..+|++++|+|++++.+......+...+.... .....|+++|+||+|+....... ...+++++|
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRERISVTREELYKMLAHE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG--GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch--hhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence 678999999999999876554444433332211 11235999999999997642210 023689999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|+++++++|.+.+..
T Consensus 159 a~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998743
No 75
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=9.5e-18 Score=155.41 Aligned_cols=149 Identities=21% Similarity=0.168 Sum_probs=101.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
....+|+++|++|||||||+|+|++.... ....|...+...... ++..+.+|||+|.. .++. ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~----~~~~t~g~~~~~~~~-~~~~l~i~Dt~G~~---------~~~~~~~~ 79 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS----HITPTQGFNIKSVQS-QGFKLNVWDIGGQR---------KIRPYWRS 79 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE----EEEEETTEEEEEEEE-TTEEEEEEECSSCG---------GGHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC----cccCcCCeEEEEEEE-CCEEEEEEECCCCH---------HHHHHHHH
Confidence 35678999999999999999999987421 112232222222222 36789999999942 2222 234
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHH-HHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~ 418 (505)
.+..+|++++|+|++++........+. .++...+. ...|+++|+||+|+....... ...++++
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKL---SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGG---TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhh---cCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 567899999999999887654433332 23332222 235999999999997653210 0235899
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+||++|.|+++++++|.+.+.
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC-
T ss_pred ccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988763
No 76
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=1.3e-17 Score=150.26 Aligned_cols=145 Identities=19% Similarity=0.140 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ 356 (505)
+|+++|.+|||||||+|+|++.... ... .|......... ..+..+.+|||||.. .+.. ....+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~-~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~ 67 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVE-YKNISFTVWDVGGQD---------KIRPLWRHYFQN 67 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--CCC--CCSSCCEEEEE-CSSCEEEEEECCCCG---------GGHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--ccc--CcCceeEEEEE-ECCEEEEEEEcCCCh---------hhHHHHHHHhcc
Confidence 6899999999999999999876522 111 23322222222 246789999999952 2222 2334678
Q ss_pred hceeEEEeeCCCCChHHHHHHHHH-HHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEecc
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDE-TLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISAT 422 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~-~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA~ 422 (505)
+|++++|+|++++.+......+.. ++..... ...|+++|+||+|+....... ...+++++||+
T Consensus 68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDEL---RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCAT 144 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhh---cCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccC
Confidence 999999999998876544333332 2222111 235999999999997643210 02358999999
Q ss_pred CcccHHHHHHHHHHHHh
Q psy50 423 RGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~ 439 (505)
+|.|+++++++|.+.+.
T Consensus 145 ~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 145 SGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTBTHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999988764
No 77
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=1.3e-19 Score=180.82 Aligned_cols=200 Identities=15% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----Cccceee----------------------eeeeeeee---------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL-----VPRNQLF----------------------ATLDVTTH--------- 317 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~-----~~~d~~f----------------------tTld~t~~--------- 317 (505)
...++|+++|.+|||||||+|+|++.... .+...+. +|.+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999998642 1112221 22220000
Q ss_pred ----c----------cccCCcceEEEEeeeeeeecC----CCCCcchhh-hhHHHHHhhceeE-EEeeCCCCChHHHHHH
Q psy50 318 ----E----------GMLPNRLRILYVDTIGFISNI----PTTLLEPFK-VTLEDAMLADIII-HVVDVSNPDYLQQKQH 377 (505)
Q Consensus 318 ----~----------~~~~~~~~v~l~DT~Gfi~~l----p~~lie~f~-~tle~i~~ADliL-~VvD~s~~~~~~~~~~ 377 (505)
. ...+....+.+|||||+.... +.+....+. .+...+..++.++ +|+|++++........
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0 001124689999999987522 222222332 2445566677555 7999987644332222
Q ss_pred HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------C----CCCeEEEeccCcccHHHHHHHHHHHHhhhcCc
Q psy50 378 VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------T----EEYDLLISATRGTGLAQLKEKVQDMILKATGR 444 (505)
Q Consensus 378 v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~----~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~ 444 (505)
+.+.+... ..|+++|+||+|+....... . +.+++++||++|.|+++|++.|.+..
T Consensus 184 ~~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~------ 251 (299)
T 2aka_B 184 IAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER------ 251 (299)
T ss_dssp HHHHHCTT------CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH------
T ss_pred HHHHhCCC------CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH------
Confidence 33333322 25999999999997653310 1 13578899999999999999997633
Q ss_pred ceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhcccc
Q psy50 445 KNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISSR 502 (505)
Q Consensus 445 ~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~~ 502 (505)
+|+|.....++. ...-|+. .+..++++.++.++.+++||+.
T Consensus 252 --------------~~~~~~~~~~~~--~~r~~~~-~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 252 --------------KFFLSHPSYRHL--ADRMGTP-YLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp --------------HHHHHCTTTGGG--GGGCSHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHhcCCccccc--hhhhCHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 244444443332 1111222 3578899999999999999964
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=8.3e-18 Score=156.64 Aligned_cols=157 Identities=22% Similarity=0.141 Sum_probs=102.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...++|+|+|.+|||||||+|+|++.....+ ++ ..|...+.... ...+..+.+|||+|...- ..+.. ..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-~~-~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~--~~~~~------~~ 83 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-HI-TATVGYNVETF-EKGRVAFTVFDMGGAKKF--RGLWE------TY 83 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-----CC-CCCSSEEEEEE-EETTEEEEEEEECCSGGG--GGGGG------GG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccc-cc-ccccceeEEEE-EeCCEEEEEEECCCCHhH--HHHHH------HH
Confidence 3457899999999999999999998763321 11 12222222222 235678999999995321 11111 22
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHH-HHHHhcCcc----cccCccEEEEEeCCCCCCCCCCC--------------CCC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVD-ETLQHLELE----EKILEHVLVVGNKVDAVPPGERV--------------TEE 414 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~----~~~~~p~IlV~NKiDl~~~~~~~--------------~~~ 414 (505)
+..+|++++|+|++++.+......+. .++...... +....|+++|+||+|+....... ...
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence 45799999999999987655443333 333321110 00135999999999998763210 133
Q ss_pred CeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 415 YDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+++++||++|.|+++++++|.+.+.+.
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 689999999999999999999988654
No 79
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=7.6e-18 Score=158.57 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+|+|.+|||||||+|+|++.... .......+.+......... ....+.+|||||..... .+ ....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--~~------~~~~ 94 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR--SV------TRSY 94 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHS--CC------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH--HH------HHHH
Confidence 3468999999999999999999987522 2222222333322222222 23689999999953211 11 2345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+....... ...+++++||++
T Consensus 95 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 171 (200)
T 2o52_A 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALT 171 (200)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 6779999999999987765544445444443322 235999999999996543321 145789999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|+++++++|.+.+.+
T Consensus 172 g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 172 GENVEEAFLKCARTILN 188 (200)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988765
No 80
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.74 E-value=1.2e-17 Score=153.23 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=103.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++... ...+..++.+......... ....+.+|||||... ...+ ....+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~--~~~~~ 87 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED------YAAI--RDNYF 87 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC------CHHH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc------cHHH--HHHHh
Confidence 46899999999999999999998752 2233333222222222222 235789999999421 1111 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+.... .....|+++|+||+|+....... ...+++++||++|
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (187)
T 2a9k_A 88 RSGEGFLCVFSITEMESFAATADFREQILRVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTR 165 (187)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCC
Confidence 67999999999998766554444444433321 11235999999999997643321 1457899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++++++|.+.+.+
T Consensus 166 ~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 166 ANVDKVFFDLMREIRA 181 (187)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998754
No 81
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=1.3e-17 Score=152.15 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=101.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||... ...+ ....+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~--~~~~~ 77 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER------FRSL--RTPFY 77 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGG------GHHH--HGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh------hhhh--HHHHH
Confidence 468999999999999999999986522 2222222222222222222 235899999999321 1111 11234
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCC----------CCCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGER----------VTEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~----------~~~~~~v~iSA~~ 423 (505)
..+|++++|+|++++........+...+... ........|+++|+||+|+...... ....+++++||++
T Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 5699999999999876655444444444332 1111134599999999999732211 1145799999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|+++++++|.+.+.+
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988753
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=1.1e-17 Score=154.52 Aligned_cols=150 Identities=21% Similarity=0.109 Sum_probs=101.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+++|.+|||||||+|+|++.. . . .+ ..|...+...... ++..+.+|||||..... ... ...+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~-~-~~-~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~--~~~------~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-V-D-TI-SPTLGFNIKTLEH-RGFKLNIWDVGGQKSLR--SYW------RNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-C-S-SC-CCCSSEEEEEEEE-TTEEEEEEEECCSHHHH--TTG------GGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-C-C-cc-cccCccceEEEEE-CCEEEEEEECCCCHhHH--HHH------HHHh
Confidence 56789999999999999999999875 2 1 11 1222222222222 46789999999953211 111 1224
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHH-HHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
..+|++++|+|++++.+......+. .++..... ...|+++|+||+|+....... ...+++++|
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhc---CCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 5699999999999987655443333 23332211 235999999999997653210 123689999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|+++++++|.+.+.+
T Consensus 161 a~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998854
No 83
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.74 E-value=3e-17 Score=152.74 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+|+|.+|||||||+|+|++.... ..+.. |.+......... ....+.+|||+|.. .+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~---- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPP---------ELQ---- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSC---------CHH----
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCCh---------hhh----
Confidence 34568999999999999999999886522 11111 111111112222 24577889999942 122
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC--CC-----------CCCCeEEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE--RV-----------TEEYDLLI 419 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~--~~-----------~~~~~v~i 419 (505)
.+..+|++++|+|++++.+......+...+....- ....|+++|+||+|+..... .. ...+++++
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN--ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC--GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 45679999999999998776655556555554421 12359999999999853221 11 12679999
Q ss_pred eccCcccHHHHHHHHHHHHhhh
Q psy50 420 SATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~~ 441 (505)
||++|.|+++++++|.+.+.+.
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 84
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.74 E-value=1.3e-17 Score=153.10 Aligned_cols=153 Identities=16% Similarity=0.084 Sum_probs=101.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++... ..++..++.+........ .....+.+|||||.... ..+... .+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~------~~ 75 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY--SIFPQT------YS 75 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT--CCCCGG------GT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhh--hHHHHH------HH
Confidence 46899999999999999999996542 222222222221111111 12357789999995421 122222 23
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHH-HhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETL-QHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATR 423 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L-~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~ 423 (505)
..+|++++|+|++++........+...+ ...... ..|+++|+||+|+....... ...+++++||++
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (181)
T 3t5g_A 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE 152 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCC
Confidence 4699999999999887665555454433 332222 35999999999997554321 145799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
|.|++++++.|.+.+.+.
T Consensus 153 ~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 85
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1e-17 Score=156.61 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=104.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++.... ..+..++.+........ .....+.+|||||... .. .....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~--~~~~~ 95 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-------TI--QREGH 95 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-------CH--HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-------cc--chhhh
Confidence 4578999999999999999999987522 11111111111111112 2346789999999542 11 23345
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
+..+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++
T Consensus 96 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACT 173 (196)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCc
Confidence 6779999999999988766555555555544321 12359999999999976433210 45799999999
Q ss_pred cc-cHHHHHHHHHHHHhhh
Q psy50 424 GT-GLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~-gi~eL~~~I~~~l~~~ 441 (505)
|. |+++++++|.+.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 174 GEGNITEIFYELCREVRRR 192 (196)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 99 9999999999988653
No 86
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.74 E-value=9.6e-18 Score=161.44 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceee-eeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF-ATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f-tTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
.+|+|+|.+|||||||+++++.... ..++.. .+.+........ .....+.+|||+|.- ....+ +...+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f--~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe------~~~~l--~~~~~ 83 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE------RFRSL--IPSYI 83 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--C----------CEEEEEECSSCEEEEEEECCSCTT------TCGGG--HHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC--CCCcCCccceEEEEEEEEecceEEEEEEEECCCch------hhhhH--HHHHh
Confidence 5899999999999999999987642 222211 112222222222 235678899999931 12222 23457
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~g 424 (505)
+.+|++++|+|++++.+......|...+.....+ +.|+++|+||+|+........ ..+++++||++|
T Consensus 84 ~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~---~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC---CCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 7899999999999988877666666666544322 359999999999876543211 457899999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy50 425 TGLAQLKEKVQDMIL 439 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~ 439 (505)
.||+++|+.|.+.+.
T Consensus 161 ~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 161 YNVKQLFRRVAAALP 175 (216)
T ss_dssp BSHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998874
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.74 E-value=4.8e-18 Score=161.39 Aligned_cols=153 Identities=19% Similarity=0.090 Sum_probs=102.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec--cccC--CcceEEEEeeeeeeecCCCCCcchhhhh
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE--GMLP--NRLRILYVDTIGFISNIPTTLLEPFKVT 350 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~--~~~~--~~~~v~l~DT~Gfi~~lp~~lie~f~~t 350 (505)
...+|+++|.+|||||||+|+|++.... ..+ ..|...+... .... ....+.+|||||.... ..+ .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------~ 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFE--KNY-NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK--AVL------K 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTT--CEE-ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT--SCC------C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--CCC-CCccceeeEEEEEEeCCCcEEEEEEEecCCchhh--chH------H
Confidence 4468999999999999999999976522 111 1111111111 1111 1267999999995321 111 1
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEe
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLIS 420 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iS 420 (505)
...+..+|++++|+|++++.+......+...+...... ..|+++|+||+|+....... ...+++++|
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 79 DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEB
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEe
Confidence 23456799999999999887665555555555544211 25999999999997653321 145799999
Q ss_pred ccCcccHHHHHHHHHHHHhhh
Q psy50 421 ATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~~ 441 (505)
|++|.|+++++++|.+.+.+.
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCC
T ss_pred cCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999998654
No 88
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.74 E-value=1.5e-17 Score=156.02 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=102.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+|+|.+|||||||+|+|++.......++..++.+......... ....+.++||+|.-.+ ...+. ...+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-----~~~~~--~~~~ 78 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-----NEWLH--DHCM 78 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC---------CTTG--GGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-----hhhHH--Hhhc
Confidence 46899999999999999999997433333333333444322222232 2346789999994321 11111 1234
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
+.+|.+++|+|++++.+......+...+...... ...|+++|+||+|+....... ...+++++||++|
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQT--EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 5699999999999887766666666555544211 135999999999986532211 1347899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|++++++.|.+.+..
T Consensus 157 ~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRL 172 (192)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
No 89
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=1.7e-18 Score=174.48 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=119.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc-----cee---eeeeeee------------------------------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPR-----NQL---FATLDVT------------------------------ 315 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~-----d~~---ftTld~t------------------------------ 315 (505)
...+.|+|+|.+|||||||+|+|+|......+ ..+ .++....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 46789999999999999999999998642111 111 1111100
Q ss_pred -------ee-------------ccccCCcceEEEEeeeeeeec----CCCCCcchh-hhhHHHHHhhceeEEEeeCCCCC
Q psy50 316 -------TH-------------EGMLPNRLRILYVDTIGFISN----IPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPD 370 (505)
Q Consensus 316 -------~~-------------~~~~~~~~~v~l~DT~Gfi~~----lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~ 370 (505)
.. ....+.+.++.|+||||+... .+..+.+.+ ..+...+..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 001224568999999998641 122343444 34567788999999999974432
Q ss_pred -hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-C-------CC--CCeEEE---eccC---cccHHHHHHH
Q psy50 371 -YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-V-------TE--EYDLLI---SATR---GTGLAQLKEK 433 (505)
Q Consensus 371 -~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-~-------~~--~~~v~i---SA~~---g~gi~eL~~~ 433 (505)
.......+...+... ..|+++|+||+|+...... . .. ..++++ ||.+ +.|++++++.
T Consensus 182 ~~~~~~~~i~~~~~~~------~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 182 LANSDALQLAKEVDPE------GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp STTCSHHHHHHHHCSS------CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred hhhhHHHHHHHHhCCC------CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 212222344444432 2599999999999865431 0 11 345555 4555 6889999999
Q ss_pred HHHHHhhhcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhcccc
Q psy50 434 VQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISSR 502 (505)
Q Consensus 434 I~~~l~~~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~~ 502 (505)
+.+++.. .++ |+ ...++ .+..++.. .+++.++..+.+++||.+
T Consensus 256 ~~~~~~~-----------------~~~-~~-~~~~~------~~~~~l~~-~lre~l~~~~~~elP~~~ 298 (315)
T 1jwy_B 256 EILYFKN-----------------HPI-YK-SIANR------SGTAYLSK-TLNKLLMFHIRDTLPDLK 298 (315)
T ss_dssp HHHHHHT-----------------CTT-GG-GSGGG------CSHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-----------------CCc-cc-cchhc------cCHHHHHH-HHHHHHHHHHHHHhHHHH
Confidence 9998843 122 22 11111 23333334 599999999999999963
No 90
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=1.5e-17 Score=154.47 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=100.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhh--hhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFK--VTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~--~tl 351 (505)
...+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||.. .+. ...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFP-DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE---------RFRKSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH---------HHHTTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhhH
Confidence 3468999999999999999999976532 1222222222222222222 24689999999942 221 123
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEec
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISA 421 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA 421 (505)
..+..+|++++|+|++++.+......+...+..... ....|+++|+||+|+....... ...+++++||
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 166 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSA 166 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCS
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeC
Confidence 446789999999999987665544444444433311 1235999999999996543321 1457999999
Q ss_pred cCc---ccHHHHHHHHHHHH
Q psy50 422 TRG---TGLAQLKEKVQDMI 438 (505)
Q Consensus 422 ~~g---~gi~eL~~~I~~~l 438 (505)
++| .|+++++++|.+.+
T Consensus 167 ~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 167 KNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp SSGGGGSCHHHHHHHHC---
T ss_pred CcCCcccCHHHHHHHHHHHH
Confidence 999 99999999998766
No 91
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=4e-17 Score=146.14 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=100.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... .....++.+........ .....+.++||||... ...+ ....+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------~~~~--~~~~~~ 73 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAM--RDQYMR 73 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS------CCHH--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchh------hhHH--HHHhhc
Confidence 47999999999999999999976522 12222221111111111 2345688999999421 1111 223456
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~g 426 (505)
.+|.+++|+|++++........+...+..... ....|+++|+||+|+....... ...+++++||++|.|
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKD--SDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQG 151 (166)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 79999999999987665544555554444321 1135999999999997633211 045899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy50 427 LAQLKEKVQDMIL 439 (505)
Q Consensus 427 i~eL~~~I~~~l~ 439 (505)
+++++++|.+.+.
T Consensus 152 i~~l~~~l~~~~~ 164 (166)
T 2ce2_X 152 VEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 92
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.7e-17 Score=159.05 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=103.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+|+|.+|||||||+|++++.......++..++.+......... ....+.++||+|.-. . ..+. ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~-----~-~~~l-~~~~ 108 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-----E-NEWL-HDHC 108 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-----H-HHHH-HHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc-----h-hhhH-HHHH
Confidence 346899999999999999999997643333444434444322222222 234678999998321 0 1110 1112
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEeccC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISATR 423 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA~~ 423 (505)
++.+|++++|+|++++.+......+...+..... ....|+++|+||+|+........ ..+++++||++
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence 3458999999999988776655556555554321 12359999999999965332210 35789999999
Q ss_pred cccHHHHHHHHHHHHhh
Q psy50 424 GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~ 440 (505)
|.|++++++.|.+.+..
T Consensus 187 g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988753
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=1.2e-17 Score=154.28 Aligned_cols=147 Identities=22% Similarity=0.164 Sum_probs=98.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+++|.+|||||||+|+|++... .....|...+...... ++..+.+|||||..... .+. ...+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~--~~~------~~~~ 86 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV----VHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLR--SSW------NTYY 86 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC----EEEECCSSSSCEEEEE-TTEEEEEEEESSSGGGT--CGG------GGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC----CccCCcCceeeEEEEE-CCEEEEEEECCCCHhHH--HHH------HHHh
Confidence 457899999999999999999998763 2222333332222222 46889999999963211 111 1224
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHH-HHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
..+|++++|+|++++........+. .++.... ....|+++|+||+|+....... ...+++++|
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 5799999999999986655443333 3333211 1235999999999997642210 023689999
Q ss_pred ccCcccHHHHHHHHHHH
Q psy50 421 ATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~ 437 (505)
|++|.|+++++++|.+.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999998753
No 94
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=9.1e-18 Score=155.15 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=102.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..+|+++|++|||||||+|+|++.. .....++..|.+........ ++..+.+|||||...-.+....+.+....-...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 4689999999999999999999875 33445555555544333332 467899999999654221111112211111113
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~~g~g 426 (505)
.+|++++|+|.++. +....+...+... ..|+++|+||+|+........ ..+++++||++|.|
T Consensus 85 ~~~~~i~v~d~~~~---~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 85 KPDLVVNIVDATAL---ERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred CCCEEEEEecchhH---HHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence 48999999998752 2233344434332 249999999999864322111 46799999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy50 427 LAQLKEKVQDMILK 440 (505)
Q Consensus 427 i~eL~~~I~~~l~~ 440 (505)
+++|+++|.+.+.+
T Consensus 156 v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 156 IEELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998854
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.5e-17 Score=152.82 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=98.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
+...+|+++|++|||||||+|+|++... .....|.......... ++..+.++||||...- ..+.. ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~--~~~~~------~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV----VTTKPTIGFNVETLSY-KNLKLNVWDLGGQTSI--RPYWR------CY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE----EEECSSTTCCEEEEEE-TTEEEEEEEEC----C--CTTGG------GT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc----CccCCcCccceEEEEE-CCEEEEEEECCCCHhH--HHHHH------HH
Confidence 3567999999999999999999987542 1111222222222222 3578999999996431 11211 22
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
+..+|++++|+|++++........+...+... ......|+++|+||+|+....... ...+++++|
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQE--EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS--STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcC--hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 45799999999999887654443333222211 112346999999999997642210 022689999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|+++++++|.+.+.+
T Consensus 161 a~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 96
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=155.99 Aligned_cols=154 Identities=15% Similarity=0.069 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ..++..++.+........ .....+.+|||+|... ... + ...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~----~---~~~ 88 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT--PRN----C---ERY 88 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCC----T---HHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCc--chh----H---HHH
Confidence 346899999999999999999998652 222222222111111111 2346788999999532 111 1 235
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------CCCeEEEec-c
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT----------EEYDLLISA-T 422 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~----------~~~~v~iSA-~ 422 (505)
+..+|++++|+|++++.+......+...+...........|+++|+||+|+........ ..+++++|| +
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 168 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACL 168 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSS
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecC
Confidence 66799999999999877665555555544433110012359999999999965433210 457999999 8
Q ss_pred CcccHHHHHHHHHHHHh
Q psy50 423 RGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~ 439 (505)
+|.|++++++.|.+.+.
T Consensus 169 ~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999988764
No 97
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1e-17 Score=160.29 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=102.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+|+|.+|||||||+|+|++.... ....+..+.+......... ....+.+|||||... ...+.. ..+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~~~ 83 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER--YRAITS------AYY 83 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTT--TTCCCG------GGT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccc--hhhhHH------HHh
Confidence 468999999999999999999987532 2222222333322222222 236889999999432 112222 224
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++|
T Consensus 84 ~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 84 RGAVGALIVYDISKSSSYENCNHWLSELRENADD---NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 5699999999999887766555555555544222 35999999999997543321 1457899999999
Q ss_pred ccHHHHHHHHHHHHhhhc
Q psy50 425 TGLAQLKEKVQDMILKAT 442 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~~ 442 (505)
.|+++++++|.+.+.+..
T Consensus 161 ~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKV 178 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999987643
No 98
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2e-17 Score=154.06 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec-ccc-CCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE-GML-PNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~-~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
....+|+++|.+|||||||+|+|++.... ..+. .|...+... ... .....+.+|||||... ...+ ..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~--~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--DTYI-PTIEDTYRQVISCDKSVCTLQITDTTGSHQ------FPAM--QR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCC--CTTS-CCCCEEEEEEEEETTEEEEEEEEECCGGGS------CHHH--HH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCC--Cccc-CccccceeEEEEECCEEEEEEEEeCCChHH------hHHH--HH
Confidence 34578999999999999999999986422 1111 111111111 111 2345789999999431 1111 23
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC---------CCCeEEEecc
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------EEYDLLISAT 422 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------~~~~v~iSA~ 422 (505)
..+..+|++++|+|++++........+...+..+.. .....|+++|+||+|+........ ..+++++||+
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (199)
T 2gf0_A 75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAK 153 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecC
Confidence 446679999999999987665544555555554321 012359999999999976332110 4578999999
Q ss_pred CcccHHHHHHHHHHHHhh
Q psy50 423 RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 423 ~g~gi~eL~~~I~~~l~~ 440 (505)
+|.|+++|+++|.+.+.+
T Consensus 154 ~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 154 MNYNVKELFQELLTLETR 171 (199)
T ss_dssp TTBSHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988743
No 99
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=175.66 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=111.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCC---
Q psy50 238 FLDSKRMVLMEREQKLKKALNKLKG------------QREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSL--- 302 (505)
Q Consensus 238 ~~e~~rr~l~~ri~~l~~eL~~l~~------------~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--- 302 (505)
..+.||+.+.++|..+++.+++... .+...|..|.++.++.|+|+|+||||||||+|+|++....
T Consensus 24 ~~~~~r~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~ 103 (349)
T 2www_A 24 LIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGH 103 (349)
T ss_dssp HHTTCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcccchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCC
Confidence 3466899999999998887776432 1223344555567899999999999999999999963100
Q ss_pred ---------C-------------------ccceeeeeeeee-------eec----cc--cCCcceEEEEeeeeeeecCCC
Q psy50 303 ---------V-------------------PRNQLFATLDVT-------THE----GM--LPNRLRILYVDTIGFISNIPT 341 (505)
Q Consensus 303 ---------~-------------------~~d~~ftTld~t-------~~~----~~--~~~~~~v~l~DT~Gfi~~lp~ 341 (505)
. ..+..|.+..++ .+. .. ...+..++++||||+.. +
T Consensus 104 ~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~~--~- 180 (349)
T 2www_A 104 KLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQ--S- 180 (349)
T ss_dssp CEEEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC----C-
T ss_pred eEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCCcch--h-
Confidence 0 012223221110 000 00 12467899999999753 1
Q ss_pred CCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-------C----
Q psy50 342 TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE-------R---- 410 (505)
Q Consensus 342 ~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~-------~---- 410 (505)
. .++ ...+|++++|+|++++.... .+.. ++ ...|.++|+||+|+..... .
T Consensus 181 ~------~~l--~~~~d~vl~V~d~~~~~~~~---~i~~-----~i---l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l 241 (349)
T 2www_A 181 E------FAV--ADMVDMFVLLLPPAGGDELQ---GIKR-----GI---IEMADLVAVTKSDGDLIVPARRIQAEYVSAL 241 (349)
T ss_dssp H------HHH--HTTCSEEEEEECCC-----------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHH
T ss_pred h------hhH--HhhCCEEEEEEcCCcchhHH---HhHH-----HH---HhcCCEEEEeeecCCCchhHHHHHHHHHHHH
Confidence 1 112 34799999999998753211 1111 11 1237899999999864210 0
Q ss_pred ---C-----CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 ---V-----TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 ---~-----~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
. ..++++++||++|.|+++|+++|.+.+.
T Consensus 242 ~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 242 KLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp TTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 1356899999999999999999998873
No 100
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.73 E-value=2.6e-17 Score=153.44 Aligned_cols=152 Identities=22% Similarity=0.217 Sum_probs=102.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ...+..++.+........ .....+.+|||||...- ..+. ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~------~~~ 91 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY--DRLR------PLS 91 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--TTTG------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH--HHHh------Hhh
Confidence 456899999999999999999998752 222222222111111111 23456799999994221 1111 122
Q ss_pred HHhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-C-----------CCC-eEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-T-----------EEY-DLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-~-----------~~~-~v~i 419 (505)
+..+|++++|+|++++...... ..+...+.... ...|+++|+||+|+....... . ..+ ++++
T Consensus 92 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
T 3reg_A 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI----DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEA 167 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEEC
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEe
Confidence 4569999999999998766553 45555555432 135999999999997642211 0 334 9999
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
||++|.|++++++.|.+.+.+
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 168 SSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp BTTTTBSHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998854
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=1e-17 Score=178.33 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=102.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhh-hhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFK-VTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~-~tle~ 353 (505)
..++|+|+|.||||||||+|+|++.....+.+.+..|.+........ .+..+.++||||+... ...+.+.+. .+...
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CSSCCEEECCCC-------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc-chHHHHHHHHHHHhh
Confidence 46899999999999999999999986555677888887765544433 4678999999998632 223445553 35566
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------CCCCeEEEeccCcccH
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------TEEYDLLISATRGTGL 427 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~~~~~v~iSA~~g~gi 427 (505)
+..||++|+|+|++++.... ...+.++|...+ +|+++|+||+|+....... .....+++||++|.|+
T Consensus 100 ~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~~~------~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAA-DEEVAKILYRTK------KPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHH-HHHHHHHHTTCC------SCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTH
T ss_pred HhhCCEEEEEEeCCCCCChH-HHHHHHHHHHcC------CCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccch
Confidence 78899999999998766544 445666666532 5999999999987543211 1346789999999999
Q ss_pred HHHHHHHHHHHhh
Q psy50 428 AQLKEKVQDMILK 440 (505)
Q Consensus 428 ~eL~~~I~~~l~~ 440 (505)
++|++.+.+.+..
T Consensus 173 ~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 173 GDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHTTGGG
T ss_pred HHHHHHHHhhccc
Confidence 9999999988753
No 102
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=153.59 Aligned_cols=153 Identities=22% Similarity=0.193 Sum_probs=100.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+++|.+|||||||+|+|++.... ... ...|.+........ ++..+.+|||||... . ... ....+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----~-~~~--~~~~~ 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQ-SQN-ILPTIGFSIEKFKS-SSLSFTVFDMSGQGR-----Y-RNL--WEHYY 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGC-CSS-CCCCSSEEEEEEEC-SSCEEEEEEECCSTT-----T-GGG--GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CCC-cCCccceeEEEEEE-CCEEEEEEECCCCHH-----H-HHH--HHHHH
Confidence 4578999999999999999999987511 111 22343333333333 367899999999422 1 111 12235
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHH-HHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
..+|++++|+|++++.+......+. .++..... .....|+++|+||+|+....... ...+++++|
T Consensus 89 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 6799999999999876544433333 33332221 00235999999999997643210 123689999
Q ss_pred ccCcccHHHHHHHHHHHHh
Q psy50 421 ATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~ 439 (505)
|++|.|+++|+++|.+.+.
T Consensus 168 a~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998874
No 103
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=2.1e-17 Score=175.13 Aligned_cols=159 Identities=21% Similarity=0.250 Sum_probs=110.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC--CCcchh--hhh
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT--TLLEPF--KVT 350 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~--~lie~f--~~t 350 (505)
...+|+|+|+||||||||+|+|++.....+.+++.+|.++....... ++..+.++||+|+...... ...+.| ..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 45799999999999999999999987656788888888765444433 4568899999998542211 112222 235
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------------CCCCC
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------------VTEEY 415 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------------~~~~~ 415 (505)
...+..+|++++|+|++++.... ...+...+...+ +|+++|+||+|+...... ....+
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~-~~~i~~~l~~~~------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERRG------RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHTT------CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHhhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcC------CCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence 67788899999999999876543 344555555544 499999999999764321 01457
Q ss_pred eEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
++++||++|.|+++|++.|.+.+...
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
No 104
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=1.1e-18 Score=163.83 Aligned_cols=153 Identities=21% Similarity=0.137 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... .......+.+......... ....+.+|||||... ...+.. ..+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~~~ 103 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER--FRTITS------SYY 103 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT--CCCCSC------C--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh--HHHHHH------HHh
Confidence 468999999999999999999987532 3333333433333332222 235799999999422 111111 234
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|++++|+|++++........+...+...... ..|+++|+||+|+....... ...+++++||++|
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 5699999999999987766555566656544322 35999999999997554321 1457999999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++++++|.+.+.+
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887643
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=2.1e-17 Score=155.53 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=95.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
+..+|+++|++|||||||+|+|++..... ...|..++...... ++..+.+|||||... ...+.. ..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~--~~~~~~------~~~ 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ----HVPTLHPTSEELTI-AGMTFTTFDLGGHIQ--ARRVWK------NYL 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC----------CCCCCSCEEEEE-TTEEEEEEEECC------CCGGG------GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc----cCCCCCceeEEEEE-CCEEEEEEECCCcHh--hHHHHH------HHH
Confidence 44689999999999999999999865221 12233333222222 357899999999532 111211 224
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC---------C--------------
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER---------V-------------- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~---------~-------------- 411 (505)
..+|++++|+|++++.+......+...+... ......|+++|+||+|+...... .
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTD--ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTC--GGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhC--cccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 5799999999999987655444433333221 11123699999999999752110 0
Q ss_pred --CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 --TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 --~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
...+++++||++|.|+++++++|.+.+
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 123589999999999999999997643
No 106
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=5e-17 Score=152.13 Aligned_cols=150 Identities=21% Similarity=0.159 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
....+|+++|.+|||||||+|+|++.... .. ..|.+....... ..+..+.+|||||... ... .....
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~--~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~------~~~--~~~~~ 93 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVE-YKNICFTVWDVGGQDK------IRP--LWRHY 93 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE--EE--EEETTEEEEEEE-ETTEEEEEEECC-----------CT--THHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc--cc--CCcCceeEEEEE-ECCEEEEEEECCCCHh------HHH--HHHHH
Confidence 35578999999999999999999876522 21 223333222222 2467899999999532 111 12344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHH-HHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDE-TLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~-~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~i 419 (505)
+..+|++++|+|++++........+.. ++.... ....|+++|+||+|+....... ...+++++
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 170 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEC
Confidence 678999999999998876544433332 222221 1235999999999997643210 02358999
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
||++|.|+++++++|.+.+.
T Consensus 171 SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 171 CATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp BTTTTBTHHHHHHHHHHHTT
T ss_pred cCCCcCCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 107
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=4.6e-17 Score=150.75 Aligned_cols=157 Identities=17% Similarity=0.026 Sum_probs=102.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccc-------eeeeeeeeeeec--c-cc-CCcceEEEEeeeeeeecCCCCCc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRN-------QLFATLDVTTHE--G-ML-PNRLRILYVDTIGFISNIPTTLL 344 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d-------~~ftTld~t~~~--~-~~-~~~~~v~l~DT~Gfi~~lp~~li 344 (505)
..+|+++|.+|||||||+|.|.+........ ....|...+... . .. .....+.+|||||... .
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~ 87 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF------Y 87 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS------C
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH------H
Confidence 4689999999999999999998864221100 011222222111 1 11 2356799999999421 1
Q ss_pred chhhhhHHHHHhhceeEEEeeCCCCChHHH---HHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------CC
Q psy50 345 EPFKVTLEDAMLADIIIHVVDVSNPDYLQQ---KQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV--------TE 413 (505)
Q Consensus 345 e~f~~tle~i~~ADliL~VvD~s~~~~~~~---~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~--------~~ 413 (505)
..+ ....+..+|++++|+|++++..... ...+..++..+.. .....|+++|+||+|+....... ..
T Consensus 88 ~~~--~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 88 NAS--RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG 164 (198)
T ss_dssp SHH--HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC
T ss_pred HHH--HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccccCHHHHHHHHHhcC
Confidence 111 2234677999999999996543332 2344455555521 12346999999999997653211 13
Q ss_pred C-CeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 414 E-YDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 414 ~-~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
. +++++||++|.|+++++++|.+.+.+.
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 4 899999999999999999999988654
No 108
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=2.7e-17 Score=152.92 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=100.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhh-hHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKV-TLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle 352 (505)
+...+|+++|.+|||||||+|+|++.... . . ...|...+.... ...+..+.+|||||... +.. ...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~-~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~---------~~~~~~~ 86 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-E-D-MIPTVGFNMRKI-TKGNVTIKLWDIGGQPR---------FRSMWER 86 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-C-S-CCCCCSEEEEEE-EETTEEEEEEEECCSHH---------HHTTHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-C-c-cCCCCceeEEEE-EeCCEEEEEEECCCCHh---------HHHHHHH
Confidence 34568999999999999999999976532 1 1 112222222221 12467899999999432 222 234
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHH-HHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVD-ETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~-~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~ 418 (505)
.+..+|++++|+|++++........+. .++..... ...|+++|+||+|+....... ...++++
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL---QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG---TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc---CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence 467899999999999886654433333 23332211 235999999999997643210 1236899
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+||++|.|+++|+++|.+.+.
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988763
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=5e-17 Score=148.42 Aligned_cols=151 Identities=23% Similarity=0.234 Sum_probs=101.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
.+..++|+++|.+|||||||+|+|++... ........|.+........ ++..+.+|||||...-. .+.. .
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~--~~~~------~ 74 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFT--TMRA------R 74 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSS--CSCC------S
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHH--HHHH------H
Confidence 35678999999999999999999998753 2333333343333222222 45678999999953211 1111 1
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CC-----C---CCe
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VT-----E---EYD 416 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~-----~---~~~ 416 (505)
.+..+|++++|+|++++......+ .+..+... ..|+++|+||+|+...... .. . .++
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~----~l~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVE----AINHAKAA---NVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHH----HHHHHGGG---SCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred HHhhCCEEEEEEECCCCCcHHHHH----HHHHHHhC---CCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccE
Confidence 234689999999998865443322 22222211 3599999999999764210 00 1 378
Q ss_pred EEEeccCcccHHHHHHHHHHHHhh
Q psy50 417 LLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+++||++|.|+++|+++|.+.+..
T Consensus 148 ~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 148 CKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999999988754
No 110
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=3.7e-17 Score=152.78 Aligned_cols=148 Identities=21% Similarity=0.257 Sum_probs=97.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
+..+|+++|.+|||||||+|+|++..... ...|...+...... ++..+.++||||.... ..+.. ..+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~--~~~~~------~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQA--RRLWK------DYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGG--TTSGG------GGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc----cccCCCCCeEEEEE-CCEEEEEEECCCCHHH--HHHHH------HHH
Confidence 34689999999999999999999865321 12233333322222 3588999999996431 11221 123
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------C--------------CCC
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------V--------------TEE 414 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~--------------~~~ 414 (505)
..+|++++|+|++++.+......+...+... ......|+++|+||+|+...... . ...
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNI--AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV 166 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTC--GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcc--hhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceE
Confidence 4699999999999987655444433333221 11123699999999999753211 0 123
Q ss_pred CeEEEeccCcccHHHHHHHHHHH
Q psy50 415 YDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
+++++||++|.|+++++++|.+.
T Consensus 167 ~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 167 EVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEeECCcCCCHHHHHHHHHhh
Confidence 58999999999999999998753
No 111
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.72 E-value=2.4e-17 Score=152.81 Aligned_cols=150 Identities=20% Similarity=0.179 Sum_probs=101.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+++|.+|||||||+|+|++.... .. ..|.......... ++..+.+|||||.... ..+... .+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~--~~~~~~------~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--TT--VPTVGVNLETLQY-KNISFEVWDLGGQTGV--RPYWRC------YF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--EE--CSSTTCCEEEEEE-TTEEEEEEEECCSSSS--CCCCSS------SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--Cc--CCCCceEEEEEEE-CCEEEEEEECCCCHhH--HHHHHH------Hh
Confidence 5678999999999999999999876522 11 1222222222222 4678999999996321 112221 13
Q ss_pred HhhceeEEEeeCCCCChHHHHHH-HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~-v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
..+|++++|+|++++.+...... +..++..... ...|+++|+||+|+....... ...+++++|
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL---RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTT---TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhc---CCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 46999999999998876543333 2333332222 235999999999997653210 023689999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|+++++++|.+.+.+
T Consensus 165 a~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 112
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=8.2e-18 Score=166.76 Aligned_cols=155 Identities=25% Similarity=0.217 Sum_probs=105.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
..+|+++|++|||||||+|+|++... ..++.+..|.+........ .+..+.++||||+..-.+....+.+....-...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 36899999999999999999999863 5666666676654433332 456799999999764322221111211111125
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~g 426 (505)
.+|++++|+|+++.. . ...+...+...+ ..|+++|+||+|+....... -..+++++||++|.|
T Consensus 81 ~~d~vi~v~D~~~~~--~-~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 81 NADVIVDIVDSTCLM--R-NLFLTLELFEME-----VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp CCSEEEEEEEGGGHH--H-HHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT
T ss_pred CCcEEEEEecCCcch--h-hHHHHHHHHhcC-----CCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC
Confidence 699999999998752 1 222333333333 14999999999975432211 056899999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy50 427 LAQLKEKVQDMILK 440 (505)
Q Consensus 427 i~eL~~~I~~~l~~ 440 (505)
+++|++.|.+.+..
T Consensus 153 i~~l~~~i~~~~~~ 166 (271)
T 3k53_A 153 VEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 113
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=152.56 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=99.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+++|.+|||||||+|+|++.. ...++..++.+......... ....+.+|||||... ...+.. .
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~ 87 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE--FDKLRP------L 87 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT--CSSSGG------G
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH--HHHHhH------h
Confidence 456789999999999999999999875 23333333333222222222 235678999999632 111221 1
Q ss_pred HHHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCC------------CCCCC-------
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPP------------GERVT------- 412 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~------------~~~~~------- 412 (505)
.+..+|++++|+|++++....... .+...+.... + ..|+++|+||+|+... .....
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-P---KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-S---SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH
Confidence 245699999999999887655443 4555555432 1 3599999999999753 11100
Q ss_pred ---C-CCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 413 ---E-EYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 413 ---~-~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
. .+++++||++|.|+++++++|.+.+.+.
T Consensus 164 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 164 EEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 2 3799999999999999999999988654
No 114
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=4.8e-17 Score=150.72 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=99.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM 355 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~ 355 (505)
.+|+++|.+|||||||+|+|++.... .....++.+........ .....+.+|||||.... ..+ ....+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------~~~~~~ 91 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--SAM------RDQYMR 91 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------CT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHH--HHH------HHHhhC
Confidence 58999999999999999999976522 22222222211111112 22456899999995321 111 122345
Q ss_pred hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------CCCCeEEEeccCccc
Q psy50 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------TEEYDLLISATRGTG 426 (505)
Q Consensus 356 ~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~~~~~v~iSA~~g~g 426 (505)
.+|++++|+|++++........+...+..... ....|+++|+||+|+....... ...+++++||++|.|
T Consensus 92 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 92 TGEGFLCVFAINNSKSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQG 169 (190)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 69999999999988765555555555544321 1135999999999987632211 045899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy50 427 LAQLKEKVQDMILKA 441 (505)
Q Consensus 427 i~eL~~~I~~~l~~~ 441 (505)
+++++++|.+.+.+.
T Consensus 170 i~~l~~~l~~~~~~~ 184 (190)
T 3con_A 170 VEDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 115
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=3.7e-17 Score=155.95 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=103.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+++|.+|||||||+|+|++.... ..+..++.+........ .....+.+|||+|...- ..+.. .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~ 94 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY--DNVRP------L 94 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG--TTTGG------G
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH--HHHHH------H
Confidence 34578999999999999999999987522 22222211111111111 23568899999994321 11111 1
Q ss_pred HHHhhceeEEEeeCCCCChHHH-HHHHHHHHHhcCcccccCccEEEEEeCCCCCCC------------CCCCC-------
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLVVGNKVDAVPP------------GERVT------- 412 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~-~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~------------~~~~~------- 412 (505)
.+..+|++++|+|++++.+... ...|...+.... + ..|+++|+||+|+... .....
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P---STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T---TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence 2456999999999999877665 456666666542 1 3599999999999753 11110
Q ss_pred ---CC-CeEEEeccCccc-HHHHHHHHHHHHhh
Q psy50 413 ---EE-YDLLISATRGTG-LAQLKEKVQDMILK 440 (505)
Q Consensus 413 ---~~-~~v~iSA~~g~g-i~eL~~~I~~~l~~ 440 (505)
.. +++++||++|.| ++++++.|.+.+..
T Consensus 171 ~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 171 KQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 34 799999999998 99999999998854
No 116
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=8.5e-17 Score=152.29 Aligned_cols=149 Identities=19% Similarity=0.121 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC--cceEEEEeeeeeeecCCCCCcchhhh--h
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN--RLRILYVDTIGFISNIPTTLLEPFKV--T 350 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~--~~~v~l~DT~Gfi~~lp~~lie~f~~--t 350 (505)
...+|+++|.+|||||||+|+|++... ...+..++.+... ....+ +..+.+|||||.. .+.. .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHE---------SLRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCH---------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEE--EEecCCCccEEEEEECCCCh---------hHHHHHH
Confidence 457999999999999999999998752 2333333322221 22222 5789999999943 2222 1
Q ss_pred HHHHHhhceeEEEeeCCCCCh--HHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-------------------
Q psy50 351 LEDAMLADIIIHVVDVSNPDY--LQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------------- 409 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~--~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------------- 409 (505)
...+..+|++++|+|+++... ......+...+..... .....|+++|+||+|+.....
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 151 (214)
T 2fh5_B 73 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151 (214)
T ss_dssp HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh-cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccc
Confidence 233678999999999987321 1112233333332111 112359999999999976531
Q ss_pred ---------------CCC-------------CCCeEEEeccCc------ccHHHHHHHHHHH
Q psy50 410 ---------------RVT-------------EEYDLLISATRG------TGLAQLKEKVQDM 437 (505)
Q Consensus 410 ---------------~~~-------------~~~~v~iSA~~g------~gi~eL~~~I~~~ 437 (505)
... ..+++++||++| .|+++++++|.+.
T Consensus 152 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 152 SAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp C------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 235899999999 9999999999875
No 117
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.71 E-value=6.2e-18 Score=158.39 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee-eeeeeeccccCC---cceEEEEeeeeeeecCCCCCcchhhh-h
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT-LDVTTHEGMLPN---RLRILYVDTIGFISNIPTTLLEPFKV-T 350 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT-ld~t~~~~~~~~---~~~v~l~DT~Gfi~~lp~~lie~f~~-t 350 (505)
..+|+++|.+|||||||+|+|++.......++..++ .+.........+ ...+.+|||||... +.. .
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~ 90 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL---------YKEQI 90 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH---------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH---------HHHHH
Confidence 468999999999999999999987322233333222 233333333333 56899999999532 111 1
Q ss_pred HHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC-CCCCC----------CCCCeEEE
Q psy50 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP-PGERV----------TEEYDLLI 419 (505)
Q Consensus 351 le~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~-~~~~~----------~~~~~v~i 419 (505)
...+..+|++++|+|++++........+...+...........|+++|+||+|+.. ..... ...+++++
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 170 (208)
T 2yc2_C 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDV 170 (208)
T ss_dssp STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEe
Confidence 12245699999999999887655555555555543220012359999999999976 33221 14579999
Q ss_pred eccC-cccHHHHHHHHHHHHhh
Q psy50 420 SATR-GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~-g~gi~eL~~~I~~~l~~ 440 (505)
||++ |.|+++++++|.+.+.+
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CC-------CHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999 99999999999998764
No 118
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.70 E-value=3.2e-17 Score=150.52 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=100.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++... ...+..++.+........ .....+.+|||||.... ..+.. ..+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~ 74 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--DRLRP------LSY 74 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG--TTTGG------GGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH--HHHHH------Hhc
Confidence 35899999999999999999997642 222222222211111111 23457789999996321 11111 124
Q ss_pred HhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCC------------CCC----------
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPG------------ERV---------- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~------------~~~---------- 411 (505)
..+|++++|+|++++.+..... .+...+.... + ..|+++|+||+|+.... ...
T Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 75 PQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-P---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-C---CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 5699999999999876655443 4555555432 1 35999999999997542 110
Q ss_pred CC-CCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 412 TE-EYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 ~~-~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.. .+++++||++|.|++++++.|.+.+.+
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 151 IGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 02 379999999999999999999998854
No 119
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=149.08 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=100.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++... ..++..++.+......... ....+.+|||||... ...+.. ..+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~------~~~ 87 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED--YDRLRP------LSY 87 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS--STTTGG------GGC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc--hhHHHH------Hhc
Confidence 35899999999999999999998742 2233222222211112222 246789999999532 111221 224
Q ss_pred HhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCC------------CCCC---------
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPG------------ERVT--------- 412 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~------------~~~~--------- 412 (505)
..+|++++|+|++++.+..... .+...+.... + ..|+++|+||+|+.... ....
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-P---NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 163 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T---TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH
Confidence 5699999999999887655443 4555555431 1 35999999999997642 1100
Q ss_pred -C-CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 -E-EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 -~-~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
. .+++++||++|.|+++++++|.+.+.
T Consensus 164 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 164 IGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2 37999999999999999999988764
No 120
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=7.1e-17 Score=151.84 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=99.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... ..+..++........... ....+.+|||||...- ..+.. ..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~~~ 94 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY--DRLRP------LSY 94 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG--TTTGG------GGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC--cccCCcccceEEEEEEECCEEEEEEEEECCCchhH--HHHHH------Hhc
Confidence 358999999999999999999987532 222111111111111122 2457899999994321 11111 124
Q ss_pred HhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCC------------CCC----------
Q psy50 355 MLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPG------------ERV---------- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~------------~~~---------- 411 (505)
..+|++++|+|++++...... ..+...+.... + ..|+++|+||+|+.... ...
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P---NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T---TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 569999999999987665544 45566665532 1 35999999999997641 110
Q ss_pred -CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 412 -TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 412 -~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
...+++++||++|.|+++|+++|.+.+.
T Consensus 171 ~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 171 ISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 1227899999999999999999998764
No 121
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.70 E-value=2.1e-17 Score=156.19 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....+|+++|.+|||||||+|+|++... ..++..++.+........ .....+.++||||.-.- ..+. ..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~------~~ 97 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY--DRLR------PL 97 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG--TTTG------GG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh--HHHH------HH
Confidence 3457899999999999999999997642 223333332222211111 23456679999995321 1111 12
Q ss_pred HHHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------CC--------
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------RV-------- 411 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~~-------- 411 (505)
.+..+|++++|+|++++.+..... .+...+.... ...|+++|+||+|+..... ..
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 345799999999999887665543 5666666543 1359999999999876431 00
Q ss_pred ---CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 ---TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 ---~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
...+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 174 KEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 124599999999999999999998754
No 122
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.69 E-value=1.5e-16 Score=148.97 Aligned_cols=153 Identities=15% Similarity=0.043 Sum_probs=99.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc----cCCcceEEEEeeeeeeecCCCCCcchhhh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM----LPNRLRILYVDTIGFISNIPTTLLEPFKV 349 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~----~~~~~~v~l~DT~Gfi~~lp~~lie~f~~ 349 (505)
....+|+++|.+|||||||+|++++..... . ..+.+.+..... ......+.+|||+|.-.- .... ..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~---~~ 88 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--E--TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF--FDPT---FD 88 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--G--GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT--TCTT---CC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--c--eeeeccccceeeeeccCCCeeEEEEEECCCCHHH--Hhhh---hh
Confidence 456799999999999999999999864221 1 111222221111 134578999999994210 0111 00
Q ss_pred hHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------------
Q psy50 350 TLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------------- 410 (505)
Q Consensus 350 tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------------- 410 (505)
....+..+|++++|+|++++ ..+....+..++..+.. .....|+++|+||+|+...+..
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 03456779999999999987 33445556666665410 1123599999999998653210
Q ss_pred --CCCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 411 --VTEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 411 --~~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
....+++++||++ .|++++++.|.+.+
T Consensus 167 ~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 0134689999999 99999999998764
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=9.5e-17 Score=151.67 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=98.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+++|.+|||||||+|+|++.... ..+..++.+......... ....+.+|||||.... ..+.. ..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~ 94 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY--DRLRP------LSY 94 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTC--TTTGG------GGC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHH--HHHHH------hhc
Confidence 358999999999999999999987532 222222211111111122 2467899999995321 11111 224
Q ss_pred HhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCC------------CCC----------
Q psy50 355 MLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPG------------ERV---------- 411 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~------------~~~---------- 411 (505)
..+|++++|+|++++...... ..+...+.... + ..|+++|+||+|+.... ...
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-P---NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR 170 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T---TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHh
Confidence 569999999999987655444 45555565532 1 35999999999997541 110
Q ss_pred -CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 412 -TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 -~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
...+++++||++|.|+++|+++|.+.+.+
T Consensus 171 ~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 171 IQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 01278999999999999999999998754
No 124
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.68 E-value=9.6e-17 Score=153.03 Aligned_cols=154 Identities=17% Similarity=0.056 Sum_probs=102.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh-CCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALT-DDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~-g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+++ +............+....... .......+.+|||||... ...+ ....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~--~~~~------~~~~ 84 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQEK--FGGL------RDGY 84 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE-ETTEEEEEEEEEECSGGG--TSCC------CHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE-ECCEEEEEEEEeCCChHH--HhHH------HHHH
Confidence 44689999999999999999944 432111122222222211111 112456889999999422 1111 2334
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC--------CCCeEEEeccCcc
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT--------EEYDLLISATRGT 425 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~--------~~~~v~iSA~~g~ 425 (505)
+..+|++++|+|++++.+......+...+.... . ..|+++|+||+|+........ ..+++++||++|.
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-E---NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-T---TCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTB
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-C---CCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCC
Confidence 567999999999998876655555555555432 1 359999999999975433211 4579999999999
Q ss_pred cHHHHHHHHHHHHhhh
Q psy50 426 GLAQLKEKVQDMILKA 441 (505)
Q Consensus 426 gi~eL~~~I~~~l~~~ 441 (505)
|+++++++|.+.+...
T Consensus 161 gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGD 176 (221)
T ss_dssp TTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999988653
No 125
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=4.7e-17 Score=149.10 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=95.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ..++..++.+........ .....+.+|||||... ...+. ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~------~~~ 76 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED--YNRLR------PLS 76 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CT--TTTTG------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh--hhhhH------Hhh
Confidence 457899999999999999999997652 223333322221111111 2345677999999532 11111 122
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC----------C----------C
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER----------V----------T 412 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~----------~----------~ 412 (505)
+..+|++++|+|++++.+..... .+...+.... . ..|+++|+||+|+...... . .
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 152 (182)
T 3bwd_D 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYA-P---GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI 152 (182)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T---TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc
Confidence 45699999999999887655443 4555555442 1 3599999999998654321 0 0
Q ss_pred C-CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 E-EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 ~-~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
. .+++++||++|.|++++++.|.+.+.
T Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 153 GAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3 37999999999999999999988763
No 126
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=152.21 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC-CcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~-~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ..++..++.+......... ....+.+|||||... ...+ ....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~--~~~~ 102 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD------YDRL--RPLF 102 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh------hhHH--HHHH
Confidence 346899999999999999999998652 2222222222211112222 345789999999432 1111 1123
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCC------------CCC---------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPG------------ERV--------- 411 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~------------~~~--------- 411 (505)
+..+|++++|+|++++....... .+...+.... ...|+++|+||+|+.... ...
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (214)
T 2j1l_A 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC----KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR 178 (214)
T ss_dssp --CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH
Confidence 56799999999999876655443 4555555432 135999999999997642 110
Q ss_pred -CC-CCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 412 -TE-EYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 412 -~~-~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
.. .+++++||++|.|++++++.|.+.+.+.
T Consensus 179 ~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 179 SVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 02 3799999999999999999999988653
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.68 E-value=1.4e-17 Score=175.55 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=109.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCC-cchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTL-LEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~l-ie~f~~tle 352 (505)
....+|+|+|.+|+|||||+|+|++.......+..++|.++............+.+|||||+.... .+ ...+..+..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~--~l~~~~~~~~~~ 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG--ELGRLRVEKARR 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCC--TTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc--chhHHHHHHHHH
Confidence 345689999999999999999999987555677888888776655555444589999999986421 11 123455677
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CCCCCeEEEeccCc
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VTEEYDLLISATRG 424 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~~v~iSA~~g 424 (505)
.+..+|++++|+|++. ..+...+...+.+.+ .|+++|+||+|+...... ....+++++||++|
T Consensus 110 ~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~~------~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 110 VFYRADCGILVTDSAP---TPYEDDVVNLFKEME------IPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHTSCSEEEEECSSSC---CHHHHHHHHHHHHTT------CCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHhcCCEEEEEEeCCC---hHHHHHHHHHHHhcC------CCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCC
Confidence 7888999999999832 234556777777664 499999999999876542 11457899999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|+++|++.|.+.+.+
T Consensus 181 ~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 181 KGFDDIGKTISEILPG 196 (423)
T ss_dssp TSTTTHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999999999854
No 128
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=3.1e-17 Score=161.01 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=101.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee-eeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-----h
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF-ATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-----K 348 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f-tTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-----~ 348 (505)
...+|+|+|.+|||||||+|+|++.........+. +|.+....... ..+..+.++||||+.... ...+.+ .
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~--~~~~~~~~~i~~ 97 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWK--DHCEALYKEVQR 97 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSS--CCCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCC--CCHHHHHHHHHH
Confidence 45789999999999999999999876333322222 34433222222 246789999999987522 222221 2
Q ss_pred hhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEe-CCCCCCCCCCC---------------
Q psy50 349 VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGN-KVDAVPPGERV--------------- 411 (505)
Q Consensus 349 ~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~N-KiDl~~~~~~~--------------- 411 (505)
.....+..+|++++|+|+++.. .....+...+.++ +. ....|.++|+| |+|+.......
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~--~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCC--HHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCC--HHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence 2233456799999999998622 2234444555543 21 11247777777 99997431000
Q ss_pred --CC----CCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 412 --TE----EYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 --~~----~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.. ...+++||++|.|+++|++.|.+.+..
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 00 111789999999999999999998854
No 129
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=1.4e-16 Score=147.29 Aligned_cols=151 Identities=19% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++.... ..+..+........... .....+.+|||||...- ..+.. ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~ 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--DNVRP------LS 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG--TTTGG------GG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh--hhhHH------hh
Confidence 3468999999999999999999987522 12111111111111111 23567899999995321 11111 12
Q ss_pred HHhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCC------------CCCC---------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPP------------GERV--------- 411 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~------------~~~~--------- 411 (505)
+..+|++++|+|++++.+.... ..+...+.... + ..|+++|+||+|+... ....
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 151 (184)
T 1m7b_A 76 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P---NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 151 (184)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T---TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C---CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH
Confidence 4569999999999987765544 45555555432 1 3599999999999742 1110
Q ss_pred --CCCCeEEEecc-CcccHHHHHHHHHHHHh
Q psy50 412 --TEEYDLLISAT-RGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 412 --~~~~~v~iSA~-~g~gi~eL~~~I~~~l~ 439 (505)
...+++++||+ +|.|++++++.|.+.+.
T Consensus 152 ~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 152 QIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 02579999999 69999999999988764
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=1.9e-16 Score=165.95 Aligned_cols=155 Identities=25% Similarity=0.233 Sum_probs=109.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee--------------cccc----CCcceEEEEeee
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH--------------EGML----PNRLRILYVDTI 333 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~--------------~~~~----~~~~~v~l~DT~ 333 (505)
..+...+|+++|++|+|||||+|+|++........+..++...+.. .... .....+.++|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3456789999999999999999999996533222333333211100 0000 012678999999
Q ss_pred eeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--
Q psy50 334 GFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-- 410 (505)
Q Consensus 334 Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-- 410 (505)
|. +.| ..+...+..+|++++|+|++++....+...+...+..++. +|+++|+||+|+......
T Consensus 84 Gh---------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-----~~iivviNK~Dl~~~~~~~~ 149 (403)
T 3sjy_A 84 GH---------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQNKVDVVSKEEALS 149 (403)
T ss_dssp CC---------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHHHHHH
T ss_pred Cc---------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-----CCEEEEEECccccchHHHHH
Confidence 93 222 3356667889999999999988655566666777777664 389999999999765321
Q ss_pred -------------CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 -------------VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 -------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
....+++++||++|.|+++|++.|.+.+..
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 014579999999999999999999997754
No 131
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.68 E-value=7.2e-18 Score=188.27 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=125.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee----------------------------------------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD---------------------------------------- 313 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld---------------------------------------- 313 (505)
-..|.|+++|++|||||||+|+|+|......+. ..+|..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~-g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS-SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCC-ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 467999999999999999999999976421111 111110
Q ss_pred -----------eeeeccccCCcceEEEEeeeeeeecC----CCCCcchhhhhHHH-H-HhhceeEEEeeCCCCChHHHHH
Q psy50 314 -----------VTTHEGMLPNRLRILYVDTIGFISNI----PTTLLEPFKVTLED-A-MLADIIIHVVDVSNPDYLQQKQ 376 (505)
Q Consensus 314 -----------~t~~~~~~~~~~~v~l~DT~Gfi~~l----p~~lie~f~~tle~-i-~~ADliL~VvD~s~~~~~~~~~ 376 (505)
+....+..++..++.|+||||+.... |.+..+.+...... + ..+|++++|+|++++.......
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00001112345578999999997632 22222333322222 2 4689999999998765433222
Q ss_pred HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEeccCcccHHHHHHHHHHH---Hhh
Q psy50 377 HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLISATRGTGLAQLKEKVQDM---ILK 440 (505)
Q Consensus 377 ~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iSA~~g~gi~eL~~~I~~~---l~~ 440 (505)
.+...+...+ .|+++|+||+|++...... .+.+++++||++|.|+++|++.|.+. +++
T Consensus 208 ~ll~~L~~~g------~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe 281 (772)
T 3zvr_A 208 KIAKEVDPQG------QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 281 (772)
T ss_dssp HHHHHHCTTC------SSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC------CCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence 3444444332 4999999999998654310 12367899999999999999999873 422
Q ss_pred hcCcceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 441 ATGRKNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 441 ~~~~~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
++ |+ ..+++. ...+.+.++|++.++..+++++||.
T Consensus 282 --------------~P---~y---d~ltDr------~g~~~LaEiLrEkL~~hi~~ELP~l 316 (772)
T 3zvr_A 282 --------------HP---SY---RHLADR------MGTPYLQKVLNQQLTNHIRDTLPGL 316 (772)
T ss_dssp --------------CT---TT---GGGGGG------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------Cc---ch---hhhhhc------ccHHHHHHHHHHHHHHHHHhhCccH
Confidence 12 21 222332 2233568999999999999999993
No 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.67 E-value=9.1e-17 Score=151.85 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ..++..++.+........ .....+.+|||||... ...+... .
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~------~ 77 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED--YSRLRPL------S 77 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC--CCC--CG------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH--HHHHHHh------h
Confidence 346899999999999999999997652 223222222221111112 2346899999999632 1112211 2
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------C----------CC-
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------V----------TE- 413 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~----------~~- 413 (505)
+..+|++++|+|++++....... .|...+.... + ..|+++|+||+|+...... . ..
T Consensus 78 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (212)
T 2j0v_A 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFA-P---NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA 153 (212)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T---TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C---CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC
Confidence 45699999999999887655443 4555555442 1 3599999999998654210 0 02
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
.+++++||++|.|+++++++|.+.+.+.
T Consensus 154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 154 AAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 4799999999999999999999988653
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=1.5e-16 Score=170.79 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+|+|.+|||||||+|+|++..... .+.|.+++...... .+..+.++||+|... ...+ +...+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~------~~~~--~~~~~ 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT----TIPTVGFNVETVTY-KNVKFNVWDVGGQDK------IRPL--WRHYY 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC----CCCCSSEEEEEEES-SSCEEEEEEECCCGG------GSGG--GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC----cCCccceeEEEEEe-CCEEEEEEECCCcHH------HHHH--HHHHh
Confidence 34689999999999999999999876322 23455554443332 568899999999422 1111 23345
Q ss_pred HhhceeEEEeeCCCCChHHHHHHH-HHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHV-DETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v-~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
..+|++|+|+|++++........+ ..+++.... ...|+++|+||+|+....... ...+++++|
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 464 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDREM---RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 464 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGG---TTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECB
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhc---CCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEE
Confidence 679999999999998765544333 333332222 235999999999997543210 023589999
Q ss_pred ccCcccHHHHHHHHHHHHhh
Q psy50 421 ATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~~ 440 (505)
|++|.|+++|+++|.+.+.+
T Consensus 465 A~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 465 ATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTTTBTHHHHHHHHHHHCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.67 E-value=1.7e-16 Score=160.44 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh--hhhHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF--KVTLED 353 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f--~~tle~ 353 (505)
..+|+++|.+|||||||+|+|++.......+.+.+|.+.........++..+.+|||||... ..+.+ ......
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-----FMENYFTKQKDHI 77 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-----HHHHHHTTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHH-----HhhhhhhhHHHHH
Confidence 35899999999999999999998755556677888887766554444678999999999432 11111 123445
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------------CC--CC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------------VT--EE 414 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------------~~--~~ 414 (505)
+..+|++++|+|++++.+......+..++..+... ....|+++|+||+|+...+.. .. ..
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 67899999999999998776666665555554210 113599999999999762111 01 16
Q ss_pred CeEEEeccCcccHHHHHHHHHHH
Q psy50 415 YDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 415 ~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
+++++||++ .|+.+++..+...
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHHT
T ss_pred EEEEeeecC-ChHHHHHHHHHHH
Confidence 899999999 7888887776654
No 135
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.66 E-value=3.4e-16 Score=148.46 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=100.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++.... .++..+........... .....+.+|||+|...- ..+... .
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~------~ 96 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--DNVRPL------S 96 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG--TTTGGG------G
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh--hHHHHh------h
Confidence 3468999999999999999999987532 22111111111111112 23568999999995321 112111 2
Q ss_pred HHhhceeEEEeeCCCCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCC------------CCCC---------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPP------------GERV--------- 411 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~------------~~~~--------- 411 (505)
+..+|++++|+|++++.+.... ..|...+.... + ..|+++|+||+|+... ....
T Consensus 97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 172 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P---NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 172 (205)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T---TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C---CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH
Confidence 4569999999999987665544 45555555432 1 3599999999999742 1110
Q ss_pred --CCCCeEEEecc-CcccHHHHHHHHHHHHh
Q psy50 412 --TEEYDLLISAT-RGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 412 --~~~~~v~iSA~-~g~gi~eL~~~I~~~l~ 439 (505)
...+++++||+ +|.|++++++.|.+.+.
T Consensus 173 ~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 173 QIGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 02578999999 68999999999988764
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=2.1e-16 Score=166.27 Aligned_cols=162 Identities=23% Similarity=0.257 Sum_probs=117.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCC--CCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPT--TLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~--~lie~f~~tl 351 (505)
+.+..|+|+|+||||||||||+|++.. +...+++|+|+.++...+.......+.++||||++..... .+.. ..+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~---~fl 230 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL---EFL 230 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH---HHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH---HHH
Confidence 456789999999999999999999986 4567888999887765555544578899999998753211 1211 234
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------CCCCCeEEEeccC
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------VTEEYDLLISATR 423 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------~~~~~~v~iSA~~ 423 (505)
+++..+|.+++|+|++ .....+...+.+.+..+.. ....+|.++|+||+|+...... ....+++++||++
T Consensus 231 ~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~ 308 (416)
T 1udx_A 231 RHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALT 308 (416)
T ss_dssp HHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred HHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 5667799999999998 4444445555555555431 1123599999999998754110 0134799999999
Q ss_pred cccHHHHHHHHHHHHhhh
Q psy50 424 GTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 424 g~gi~eL~~~I~~~l~~~ 441 (505)
++|+++|++.|.+.+.+.
T Consensus 309 g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 309 GAGLPALKEALHALVRST 326 (416)
T ss_dssp CTTHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=159.76 Aligned_cols=149 Identities=20% Similarity=0.163 Sum_probs=101.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+|+|.+|||||||+|+|++... .... .|.+....... ..+..+.++||||... ...+ ....+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~--pT~~~~~~~~~-~~~~~l~i~Dt~G~~~------~~~~--~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTI--PTIGFNVETVE-YKNISFTVWDVGGQDK------IRPL--WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEE--EETTEEEEEEE-ETTEEEEEEECC-----------CCS--HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCcc--cccceEEEEEe-cCcEEEEEEECCCCHh------HHHH--HHHHh
Confidence 445899999999999999999998762 2222 24433332222 2467899999999321 1111 23446
Q ss_pred HhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC-------------CCCCeEEEe
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------------TEEYDLLIS 420 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------------~~~~~v~iS 420 (505)
..+|++++|+|++++....... .+..++..... ...|+++|+||+|+....... ...+++++|
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL---RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc---CCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 7799999999999887664433 33344443322 235999999999997654310 023589999
Q ss_pred ccCcccHHHHHHHHHHHHh
Q psy50 421 ATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 421 A~~g~gi~eL~~~I~~~l~ 439 (505)
|++|.|+++|++.|.+.+.
T Consensus 308 Ak~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTTTBTHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.64 E-value=6.1e-16 Score=142.64 Aligned_cols=156 Identities=22% Similarity=0.185 Sum_probs=91.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCC--CCCcchhhhh-HHH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP--TTLLEPFKVT-LED 353 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp--~~lie~f~~t-le~ 353 (505)
.+|+++|.+|||||||+|+|++.. ......+..|.+..... . ..+.++||||+..-.. ....+.+... ...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~--~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIE--W---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEE--E---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEe--c---CCEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 579999999999999999999876 33444444444332211 1 1688999999643111 0112333222 222
Q ss_pred HHh-hceeEEEeeCCCCChHHHH-HHHHH---------HHHhcCcccccCccEEEEEeCCCCCCCCCC-CC------CC-
Q psy50 354 AML-ADIIIHVVDVSNPDYLQQK-QHVDE---------TLQHLELEEKILEHVLVVGNKVDAVPPGER-VT------EE- 414 (505)
Q Consensus 354 i~~-ADliL~VvD~s~~~~~~~~-~~v~~---------~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-~~------~~- 414 (505)
+.. ++.+++|+|+.+....... ..+.. .+..+.. ...|+++|+||+|+...... .. ..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcHHHHHHHHHHHhhhh
Confidence 333 5544444444444333221 12211 1121111 13599999999999765310 00 11
Q ss_pred ------CeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 415 ------YDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 415 ------~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+++++||++|.|+++++++|.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 479999999999999999999988654
No 139
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.7e-17 Score=156.06 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=97.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
...+|+++|.+|||||||+|+|++... ......++.+........ .....+.+|||||...- ... ....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~--~~~~ 98 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY------DRL--RPLS 98 (204)
Confidence 457899999999999999999987642 223323332222111111 23456779999995321 111 1223
Q ss_pred HHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCCC------------CCC--------
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPGE------------RVT-------- 412 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~------------~~~-------- 412 (505)
+..+|++++|+|++++....... .+...+.... . ..|+++|+||+|+..... ...
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~---~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 3th5_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
Confidence 56799999999999887655433 4444444321 1 359999999999975421 000
Q ss_pred --C-CCeEEEeccCcccHHHHHHHHHHHH
Q psy50 413 --E-EYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 413 --~-~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
. .+++++||++|.|+++|++.|.+.+
T Consensus 175 ~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1 2789999999999999999997754
No 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.63 E-value=7.3e-16 Score=142.88 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=93.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCcccee-eeeeeeeeecccc----CCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL-FATLDVTTHEGML----PNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~-ftTld~t~~~~~~----~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
.+|+|+|.+|||||||+|+|++......+.+. ..+.+........ .....+.+|||+|...- ..+ ..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~------~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF--YST------HP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHH--HTT------SH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH--HHh------hH
Confidence 58999999999999999999986322222221 1122222111111 13568899999995321 011 12
Q ss_pred HHHHhhceeEEEeeCCCCC-hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C--CCCC--
Q psy50 352 EDAMLADIIIHVVDVSNPD-YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V--TEEY-- 415 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~-~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~--~~~~-- 415 (505)
..+..+|++++|+|++++. .......+...+.... ...|+++|+||+|+...... . ...+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 3356799999999998863 3333333443333221 13599999999998653211 0 1233
Q ss_pred --eEEEeccCcc-cHHHHHHHHHHHHhh
Q psy50 416 --DLLISATRGT-GLAQLKEKVQDMILK 440 (505)
Q Consensus 416 --~v~iSA~~g~-gi~eL~~~I~~~l~~ 440 (505)
++++||++|. |+++|++.|.+.+.+
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999996 999999999988754
No 141
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=2.5e-17 Score=169.67 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=118.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----Cccceee----------------------eeeeeee--------e-
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL-----VPRNQLF----------------------ATLDVTT--------H- 317 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~-----~~~d~~f----------------------tTld~t~--------~- 317 (505)
-..++|+++|.+|||||||+|+|+|.... .+...+. +|.+... +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999997642 1111111 2221000 0
Q ss_pred ----cc----------ccCCcceEEEEeeeeeeecC----CCCCcchhhh-hHHHHH-hhceeEEEeeCCCCChHHHHHH
Q psy50 318 ----EG----------MLPNRLRILYVDTIGFISNI----PTTLLEPFKV-TLEDAM-LADIIIHVVDVSNPDYLQQKQH 377 (505)
Q Consensus 318 ----~~----------~~~~~~~v~l~DT~Gfi~~l----p~~lie~f~~-tle~i~-~ADliL~VvD~s~~~~~~~~~~ 377 (505)
.+ ..++...+.|+||||+.... |.+..+.+.. +...+. .++++++|+|++.......
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 00 01224679999999987522 3332233432 223333 3467777888765433221
Q ss_pred HHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC---------C----CCCeEEEeccCcccHHHHHHHHHHHHhhhcCc
Q psy50 378 VDETLQHLELEEKILEHVLVVGNKVDAVPPGERV---------T----EEYDLLISATRGTGLAQLKEKVQDMILKATGR 444 (505)
Q Consensus 378 v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~---------~----~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~ 444 (505)
+..+++.+.-. ..|+++|+||+|+....... . +.+++++||++|.|+++|++.+.+.-
T Consensus 186 ~~~i~~~~~~~---~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~------ 256 (353)
T 2x2e_A 186 ALKVAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER------ 256 (353)
T ss_dssp HHHHHHHHCTT---CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHH------
T ss_pred HHHHHHHhCcC---CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHHH------
Confidence 22334443221 25999999999998653310 0 13578899999999999999997632
Q ss_pred ceEEEEecCCCcccccccCCCeEEEeeecCCCCeEEEEEEEecHHHHHHHHHHhccc
Q psy50 445 KNITMRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISS 501 (505)
Q Consensus 445 ~~~~l~~p~~~~~~~~l~~~~~v~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~p~~ 501 (505)
.|+|++....+. ...-|.. .+..++++.++..+.+++||.
T Consensus 257 --------------~~f~~~~~~~~~--~~r~~~~-~l~~~l~e~l~~~i~~~lP~l 296 (353)
T 2x2e_A 257 --------------KFFLSHPSYRHL--ADRMGTP-YLQKVLNQQLTNHIRDTLPGL 296 (353)
T ss_dssp --------------HHHHHCTTTGGG--GGGCSHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHhccCCccccc--HHhhCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 123333322221 0011222 247789999999999999994
No 142
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=1.7e-15 Score=164.35 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CccceeeeeeeeeeeccccC---CcceEEEEeeeeeeecCCCCCcc
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL-----VPRNQLFATLDVTTHEGMLP---NRLRILYVDTIGFISNIPTTLLE 345 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~-----~~~d~~ftTld~t~~~~~~~---~~~~v~l~DT~Gfi~~lp~~lie 345 (505)
....+|+++|.+|||||||+|+|++.... +.+...+++..++.+..... .+..+.++||||.-. ...+.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~--~~~~~- 115 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI--MHASH- 115 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT--TTTTC-
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH--HHHHH-
Confidence 45578999999999999999999987521 22222222221111122222 257899999999311 11111
Q ss_pred hhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCC
Q psy50 346 PFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEY 415 (505)
Q Consensus 346 ~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~ 415 (505)
...+..+|++++|+|+++.. ....+...+...+- ..|+++|+||+|+....... ...+
T Consensus 116 -----~~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 183 (535)
T 3dpu_A 116 -----QFFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG----KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR 183 (535)
T ss_dssp -----HHHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS----SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC
T ss_pred -----HHHccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC----CCCEEEEEECCCcccccccCHHHHHHHHHhcCCc
Confidence 22356799999999998653 34556666666542 25999999999997654421 1356
Q ss_pred eEEEeccCcccHHHHHHHHHHHHhh
Q psy50 416 DLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
++++||++|.|+++|++.|.+.+.+
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTC
T ss_pred eEEEecCcccCHHHHHHHHHHHHhc
Confidence 9999999999999999999998854
No 143
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.63 E-value=1.2e-15 Score=153.57 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc-CCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML-PNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~-~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
+...+|+++|.+|||||||+|++++... ...+..++.+........ .....+.+|||||...- ..+.. .
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~ 222 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY--DRLRP------L 222 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG--TTTGG------G
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh--hHHHH------H
Confidence 4567899999999999999999997642 233333333322221111 12345669999995321 11111 2
Q ss_pred HHHhhceeEEEeeCCCCChHHHHH-HHHHHHHhcCcccccCccEEEEEeCCCCCCCC------------CCC--------
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQ-HVDETLQHLELEEKILEHVLVVGNKVDAVPPG------------ERV-------- 411 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~-~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~------------~~~-------- 411 (505)
.+..+|++++|+|++++.+..... .+...+..... ..|+++|+||+|+.... ...
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 298 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 298 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence 245699999999999887655443 45555554321 35999999999986531 110
Q ss_pred --CC-CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 412 --TE-EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 412 --~~-~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.. .+++++||++|.|++++++.|.+.+.
T Consensus 299 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 299 KEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 02 37999999999999999999998874
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=3.3e-16 Score=155.50 Aligned_cols=180 Identities=18% Similarity=0.125 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccce------eeeeeeeeeeccccC-Cc--ceEEEEeeeeeeecCCCCCcch
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ------LFATLDVTTHEGMLP-NR--LRILYVDTIGFISNIPTTLLEP 346 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~------~ftTld~t~~~~~~~-~~--~~v~l~DT~Gfi~~lp~~lie~ 346 (505)
..+|+++|++|+|||||+|+|++.+.. ..++ ...|..+........ ++ ..+.++|||||-.... ..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~--~~~~ 84 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLY-SPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD--NSNC 84 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSC--CTTT
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccccc--chhh
Confidence 367999999999999999999988633 3333 234443333322222 22 4899999999854221 1111
Q ss_pred hhhh--------HHHHHh-------------hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 347 FKVT--------LEDAML-------------ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 347 f~~t--------le~i~~-------------ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
+... ...+.. +|++++++|.+..........+.+.+.. ..|+++|+||+|+.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTL 157 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCC
Confidence 2111 111222 5688888876653333333444444443 25999999999987
Q ss_pred CCCCCC------------CCCCeEEEeccCcccHHHHHHHHHHHHhhhcCcceEEEEecC-CCcccccccCCCeE
Q psy50 406 PPGERV------------TEEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITMRVRS-GGSEYQWLMKHTAV 467 (505)
Q Consensus 406 ~~~~~~------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~l~~p~-~~~~~~~l~~~~~v 467 (505)
...+.. ...+++++||++++|++++++.|.+.++-...... ..++. ........|+-+.+
T Consensus 158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~--~~~~~~~~~~~~r~y~wg~~ 230 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSN--TIIEVNGKRVRGRQYPWGVA 230 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCC--CC--------CEEECSSCEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEee--eEEeeCCeEEEeeecccceE
Confidence 543321 14578899999999999999999987753221111 11222 23344566766744
No 145
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=4.1e-17 Score=170.90 Aligned_cols=88 Identities=28% Similarity=0.366 Sum_probs=48.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecccc---------------------C--CcceEEEEeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGML---------------------P--NRLRILYVDTIG 334 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~---------------------~--~~~~v~l~DT~G 334 (505)
+|+|+|.||||||||+|+|++.. ..+.+++|+|.+++...... . ...++.|+||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 68999999999999999999987 66789999998876543210 1 136799999999
Q ss_pred eeecC--CCCCcchhhhhHHHHHhhceeEEEeeCCCC
Q psy50 335 FISNI--PTTLLEPFKVTLEDAMLADIIIHVVDVSNP 369 (505)
Q Consensus 335 fi~~l--p~~lie~f~~tle~i~~ADliL~VvD~s~~ 369 (505)
+.... ...+... .+..++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~---~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNK---FLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -----------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHH---HHHHHhcCCEEEEEEecccc
Confidence 86421 1122222 23445679999999999875
No 146
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.62 E-value=3.5e-15 Score=139.97 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+|+|++|||||||+|+|++.... ....+..+.+.......+.+ ...+.+|||+|... ...+ ....+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~--~~~~------~~~~~ 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER--YRRI------TSAYY 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG--TTCC------CHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchh--hhhh------hHHHH
Confidence 357999999999999999999997532 11112222222222222222 35678899999432 1111 12234
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|.+++|+|++++........+...+..... ...|+++|+||+|+....... ....++.+||+++
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 568999999999887655444444444433221 135899999999986533221 1346889999999
Q ss_pred ccHHHHHHHHHHHHhhh
Q psy50 425 TGLAQLKEKVQDMILKA 441 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~~ 441 (505)
.|++++++.|.+.+.+.
T Consensus 153 ~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 153 TNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988653
No 147
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.62 E-value=2.7e-15 Score=167.60 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeee--------------eeeeeeec----------------------
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA--------------TLDVTTHE---------------------- 318 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft--------------Tld~t~~~---------------------- 318 (505)
...+|+|+|.+|||||||+|+|+|.....+++.+.+ |.+.....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 567899999999999999999999864433333333 22110000
Q ss_pred -----------------cccCC---cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHH
Q psy50 319 -----------------GMLPN---RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHV 378 (505)
Q Consensus 319 -----------------~~~~~---~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v 378 (505)
+..+. ...+.++||||+.... . ....+...+..||++++|+|++++........+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~---~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A---RNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T---CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h---HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 00000 0468999999986521 1 123356677889999999999987665544444
Q ss_pred HHHHHhcCcccccCccEEEEEeCCCCCCCC----C-----------C--------C----------CCCCeEEEecc---
Q psy50 379 DETLQHLELEEKILEHVLVVGNKVDAVPPG----E-----------R--------V----------TEEYDLLISAT--- 422 (505)
Q Consensus 379 ~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~----~-----------~--------~----------~~~~~v~iSA~--- 422 (505)
.+.+... ..|+++|+||+|+.... + . . ...++++|||+
T Consensus 223 ~~~l~~~------~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al 296 (695)
T 2j69_A 223 ENYIKGR------GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL 296 (695)
T ss_dssp HHHTTTS------CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred HHHHHhh------CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence 4444332 24899999999986432 0 0 0 11368999999
Q ss_pred -----------CcccHHHHHHHHHHHHhh
Q psy50 423 -----------RGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 423 -----------~g~gi~eL~~~I~~~l~~ 440 (505)
+|.|+++|++.|.+.+..
T Consensus 297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 297 RRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=1.5e-15 Score=148.82 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=99.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee--eeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhhH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF--ATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVTL 351 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f--tTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~tl 351 (505)
...+|+|+|.||||||||+|+|++..... ....+ +|......... .++..+.++||||+..... ...+.+ ....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~-~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~-~~~~~~~~~i~ 96 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFF-SRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQV-SKTDPGCEERG 96 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC----------CCSCEEEEEE-ETTEEEEEEECCSCSSTTH-HHHSTTSHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCcc-ccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCC-CcHHHHHHHHH
Confidence 45689999999999999999999987432 22222 44443332222 3467899999999864211 110222 1122
Q ss_pred ----HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCC----------C-----
Q psy50 352 ----EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGER----------V----- 411 (505)
Q Consensus 352 ----e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~----------~----- 411 (505)
.....+|++|+|+|+++. ... ...+.+.+.++ +. .....|+++|.||+|+...... .
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~-~~~-~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRF-TAQ-DQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBC-CHH-HHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCC-CHH-HHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 223789999999999853 232 33444444443 32 2223599999999999653210 0
Q ss_pred -CCCCeEEEeccC-----cccHHHHHHHHHHHHhh
Q psy50 412 -TEEYDLLISATR-----GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 -~~~~~v~iSA~~-----g~gi~eL~~~I~~~l~~ 440 (505)
....++++++.. +.|+++|++.|.+++.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 033466666554 68999999999999865
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.60 E-value=2.2e-16 Score=170.85 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=105.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..|+|+++|++|+|||||+|+|++... ........|.++.......+++..+.||||||.-.- . .+.. ..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f-~-~~~~------~~~ 73 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF-S-AMRA------RGT 73 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT-T-TSBB------SSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH-H-HHHH------HHH
Confidence 568999999999999999999998652 233445566665554444556678999999994321 1 1111 123
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--CC--------------CCCeEE
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--VT--------------EEYDLL 418 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--~~--------------~~~~v~ 418 (505)
..+|++++|+|++++.... .......+...+ .|+++|+||+|+...... .. ..++++
T Consensus 74 ~~aD~vILVVDa~dg~~~q-t~e~l~~~~~~~------vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 74 QVTDIVILVVAADDGVMKQ-TVESIQHAKDAH------VPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp BSBSSCEEECBSSSCCCHH-HHHHHHHHHTTT------CCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECC
T ss_pred ccCCEEEEEEECCCCccHH-HHHHHHHHHHcC------CcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEE
Confidence 4599999999999876543 333444454443 389999999999753321 00 136899
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+||++|.|+++|++.|...+.
T Consensus 147 vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHT
T ss_pred EECCCCCCchhHHHHHHHhhh
Confidence 999999999999999998864
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.59 E-value=5.4e-15 Score=155.16 Aligned_cols=153 Identities=25% Similarity=0.247 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc--cceeeeeeeeeeeccc---------------cC-------CcceEEE
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVP--RNQLFATLDVTTHEGM---------------LP-------NRLRILY 329 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~--~d~~ftTld~t~~~~~---------------~~-------~~~~v~l 329 (505)
+...+|+++|++|+|||||+|+|++...... ......|.+....... .+ ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3457899999999999999999997531111 1111112222110000 01 1267999
Q ss_pred EeeeeeeecCCCCCcchhh-hhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 330 VDTIGFISNIPTTLLEPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 330 ~DT~Gfi~~lp~~lie~f~-~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
+||||.. .|. .....+..+|++++|+|++++....+.......+..++. +|+++|+||+|+....
T Consensus 86 iDtPGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~-----~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 86 VDSPGHE---------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGI-----DKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EECSSHH---------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTC-----CCEEEEEECTTSSCTT
T ss_pred EECCCHH---------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCC-----CeEEEEEEccCCCCHH
Confidence 9999942 231 223334567999999999976523333344445565554 3799999999998754
Q ss_pred CCC---------------CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 409 ERV---------------TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 409 ~~~---------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
... ...+++++||++|.|+++|+++|.+.+..
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 310 13579999999999999999999987753
No 151
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=141.14 Aligned_cols=162 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCcccee--eeeeeeeeeccccCCcceEEEEeeeeeeecCCC--CCcchhhh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL--FATLDVTTHEGMLPNRLRILYVDTIGFISNIPT--TLLEPFKV 349 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~--ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~--~lie~f~~ 349 (505)
...++|+|+|.+|||||||+|+|++.... ..... ++|.++....... .+..+.+|||||+...... ...+.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34578999999999999999999998743 33333 4555443333222 4678999999998752110 11222322
Q ss_pred hH-HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCC----------------
Q psy50 350 TL-EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVT---------------- 412 (505)
Q Consensus 350 tl-e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~---------------- 412 (505)
.+ .....+|++|+|+|+++... .....+..++..++.. ...|+++|+||+|+........
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 21 22345699999999986544 2233344444433321 1248999999999976543210
Q ss_pred CCCeEEEeccC-----cccHHHHHHHHHHHHhh
Q psy50 413 EEYDLLISATR-----GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 413 ~~~~v~iSA~~-----g~gi~eL~~~I~~~l~~ 440 (505)
...++++++.. +.|+.+|++.|.+++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 34567777664 37999999999988855
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.58 E-value=6.3e-15 Score=156.26 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce------------------------------eeeeeeeeeeccccCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ------------------------------LFATLDVTTHEGMLPN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~------------------------------~ftTld~t~~~~~~~~ 323 (505)
+....|+++|++|+|||||+|+|++.......+. ...|.+........ .
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence 4557899999999999999999965432211111 22345443333322 4
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChH------HHHHHHHHHHHhcCcccccCccEEE
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL------QQKQHVDETLQHLELEEKILEHVLV 397 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~------~~~~~v~~~L~~lg~~~~~~~p~Il 397 (505)
+..+.++||||+.. . ...+...+..||++++|+|++++..+ .+.......+..+++ .++++
T Consensus 94 ~~~~~iiDTPGh~~-----f---~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v-----~~iIv 160 (439)
T 3j2k_7 94 KKHFTILDAPGHKS-----F---VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-----KHLIV 160 (439)
T ss_pred CeEEEEEECCChHH-----H---HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC-----CeEEE
Confidence 56899999999432 1 13345567789999999999986531 244445556666654 13899
Q ss_pred EEeCCCCCCCCCC-------------------C---CCCCeEEEeccCcccHHHHHH
Q psy50 398 VGNKVDAVPPGER-------------------V---TEEYDLLISATRGTGLAQLKE 432 (505)
Q Consensus 398 V~NKiDl~~~~~~-------------------~---~~~~~v~iSA~~g~gi~eL~~ 432 (505)
|+||+|+...+.. . ...+++++||++|.|++++.+
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999999642110 0 024699999999999999654
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.57 E-value=1.4e-14 Score=135.43 Aligned_cols=151 Identities=16% Similarity=0.084 Sum_probs=97.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC-cceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN-RLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~-~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
..+|+|+|++|||||||+|+|++.... ....+..+.+.....+...+ ...+.++||+|..... .+ ....+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~--~~------~~~~~ 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR--AI------TSAYY 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS--CC------CHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh--hh------hHHHh
Confidence 368999999999999999999987633 12222223333222222222 3456679999964311 11 12334
Q ss_pred HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCc
Q psy50 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRG 424 (505)
Q Consensus 355 ~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g 424 (505)
..+|.+++|+|+++....+....+...+..... ...|+++|+||+|+....... ....++.+||+++
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 568999999999877554433334443433211 135899999999986533211 1346888999999
Q ss_pred ccHHHHHHHHHHHH
Q psy50 425 TGLAQLKEKVQDMI 438 (505)
Q Consensus 425 ~gi~eL~~~I~~~l 438 (505)
.|++++++.|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 154
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.57 E-value=1.7e-15 Score=155.31 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=109.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee
Q psy50 238 FLDSKRMVLMEREQKLKKALNKLK--GQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315 (505)
Q Consensus 238 ~~e~~rr~l~~ri~~l~~eL~~l~--~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t 315 (505)
.++.||+.+.+++..++.+..... ..............+..|+|+|+||||||||+|+|++...+..+.+.+.+.++.
T Consensus 15 ~~~~~r~~l~r~i~~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 15 LLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp HHTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred HHcCCHHHHHHHHHHHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 346788999888876544322221 122223334445678899999999999999999998643222333333333321
Q ss_pred eecc--------------------------------------------ccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 316 THEG--------------------------------------------MLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 316 ~~~~--------------------------------------------~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
.... ....+.+++|+||||+.. +. . ++
T Consensus 95 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~--~~-----~--~v 165 (337)
T 2qm8_A 95 STRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ--SE-----T--AV 165 (337)
T ss_dssp GGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS--CH-----H--HH
T ss_pred ccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCc--ch-----h--hH
Confidence 1000 001467899999999764 21 1 11
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------------CC-----
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER--------------VT----- 412 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~--------------~~----- 412 (505)
...+|++++|+|.+.+.. .+.+.. ++.. .+.++|+||+|+...... ..
T Consensus 166 --~~~~d~vl~v~d~~~~~~---~~~i~~-----~i~~---~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~ 232 (337)
T 2qm8_A 166 --ADLTDFFLVLMLPGAGDE---LQGIKK-----GIFE---LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSAT 232 (337)
T ss_dssp --HTTSSEEEEEECSCC---------CCT-----THHH---HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTT
T ss_pred --HhhCCEEEEEEcCCCccc---HHHHHH-----HHhc---cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccC
Confidence 246999999999864421 111100 0101 256788899997542210 01
Q ss_pred -CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 -EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 -~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.++++++||++|.|+++|++.|.+...
T Consensus 233 ~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 233 WTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp BCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998764
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.57 E-value=3e-15 Score=157.11 Aligned_cols=153 Identities=24% Similarity=0.268 Sum_probs=100.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ccceeeeeeeeeeecccc---------------C-------CcceEEE
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV--PRNQLFATLDVTTHEGML---------------P-------NRLRILY 329 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~--~~d~~ftTld~t~~~~~~---------------~-------~~~~v~l 329 (505)
+...+|+++|++|+|||||+|+|++..... .......|.+.......+ + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 445689999999999999999999753111 111111222221110000 1 1267999
Q ss_pred EeeeeeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 330 VDTIGFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 330 ~DT~Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
+||||+. .| ......+..+|++++|+|++++....+.......+..++. +|+++|+||+|+....
T Consensus 88 iDtPGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~-----~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 88 IDAPGHE---------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ-----KNIIIAQNKIELVDKE 153 (410)
T ss_dssp EECSSHH---------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHH
T ss_pred EECCChH---------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEECccCCCHH
Confidence 9999942 23 2234445678999999999976423334444455665554 3799999999997643
Q ss_pred CC---------------CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 409 ER---------------VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 409 ~~---------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.. ....+++++||++|.|+++|+++|.+.++.
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 10 013579999999999999999999987753
No 156
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.56 E-value=2e-15 Score=154.96 Aligned_cols=179 Identities=17% Similarity=0.137 Sum_probs=107.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee-
Q psy50 239 LDSKRMVLMEREQKLKKALNKLKGQREMM--RNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT- 315 (505)
Q Consensus 239 ~e~~rr~l~~ri~~l~~eL~~l~~~r~~~--r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t- 315 (505)
.+.+|+.+.+.|..++.+.......+... +..+...++..|+++|+||||||||+|+|++......+.....+.|+.
T Consensus 17 ~~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 17 RQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HcCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 46688999999988776554433222222 223445678899999999999999999997431000000000000000
Q ss_pred -------------------------------------ee----cccc--CCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 316 -------------------------------------TH----EGML--PNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 316 -------------------------------------~~----~~~~--~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
.+ .... ..+.+++++||||+.. +. ..
T Consensus 97 ~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~--~~---------~~ 165 (341)
T 2p67_A 97 PVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQ--SE---------TE 165 (341)
T ss_dssp --------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTT--HH---------HH
T ss_pred CCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccc--hH---------HH
Confidence 00 0000 2367899999999753 10 01
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CC------C
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VT------E 413 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~------~ 413 (505)
....+|++++|+|++.+... .. +.. +. ...|.++|+||+|+...... .. .
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~---~~----l~~-~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 234 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDL---QG----IKK-GL---MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQ 234 (341)
T ss_dssp HHTTCSEEEEEECC---------CC----CCH-HH---HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBC
T ss_pred HHHhCCEEEEEEeCCccHHH---HH----HHH-hh---hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCC
Confidence 24679999999998754321 00 000 00 12388999999999753110 01 3
Q ss_pred CCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 414 EYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 414 ~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.+++++||++|.|+++|++.|.+.+.
T Consensus 235 ~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 235 PRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999774
No 157
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=149.20 Aligned_cols=80 Identities=16% Similarity=0.070 Sum_probs=57.0
Q ss_pred hhceeEEEeeCCCC--ChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCCCC---------CCCCCeEEEeccC
Q psy50 356 LADIIIHVVDVSNP--DYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPGER---------VTEEYDLLISATR 423 (505)
Q Consensus 356 ~ADliL~VvD~s~~--~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~~~---------~~~~~~v~iSA~~ 423 (505)
.||++++|+|++++ .+.+....+...+... ... ..|+++|+||+|+...... ....+++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT---KKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT---TCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC---CCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 58999999999987 6655555554444332 111 2599999999998643211 0145799999999
Q ss_pred cccHHHHHHHHHHHH
Q psy50 424 GTGLAQLKEKVQDMI 438 (505)
Q Consensus 424 g~gi~eL~~~I~~~l 438 (505)
|.|+++++++|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 158
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.56 E-value=7.1e-15 Score=138.41 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=96.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeec-CCCCCcchhhhh
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN-IPTTLLEPFKVT 350 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~-lp~~lie~f~~t 350 (505)
...+.+|+|+|++|||||||+|+|++.. ...+.+...+|..... .... + .+.++||||+... .+....+.+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~-~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVA-D-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEE-T-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEec-C-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 4566789999999999999999999875 1222233333332111 1111 2 6789999997531 122222333332
Q ss_pred HHH----HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------CC-
Q psy50 351 LED----AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------VT- 412 (505)
Q Consensus 351 le~----i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~~- 412 (505)
+.. ...+|.+++++|++++.... ...+..++...+ .|+++|.||+|+...... ..
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~------~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDSN------IAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHTT------CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHHHHHcC------CCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 222 24689999999998875543 234455555444 388999999998764210 00
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
...++|+||+++.|++++++.|.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 235789999999999999999998864
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.56 E-value=8.7e-15 Score=156.95 Aligned_cols=147 Identities=27% Similarity=0.290 Sum_probs=99.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC------CCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-h
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDS------LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-K 348 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~------~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~ 348 (505)
...|+++|++|+|||||+|+|++... .........|.+........ ++..+.++||||+. .| .
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~---------~~~~ 88 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA---------DLIR 88 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH---------HHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH---------HHHH
Confidence 46899999999999999999998751 11122233444443322222 45789999999952 23 3
Q ss_pred hhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC----------------CC
Q psy50 349 VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER----------------VT 412 (505)
Q Consensus 349 ~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~----------------~~ 412 (505)
.+...+..+|++++|+|++++... +......++..+++ |.++|+||+|+...... ..
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~~~i------p~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKT-QTGEHMLILDHFNI------PIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCH-HHHHHHHHHHHTTC------CBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHHHhhCCEEEEEEecCCCccH-HHHHHHHHHHHcCC------CEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 345567789999999999886433 33444556666553 77999999999763210 11
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
..+++++||++|.|+++|+++|.+.+.
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 357999999999999999999999875
No 160
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.54 E-value=7.8e-15 Score=151.25 Aligned_cols=176 Identities=20% Similarity=0.194 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee-----
Q psy50 243 RMVLMEREQKLKKALNKLKGQREMMR--NKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT----- 315 (505)
Q Consensus 243 rr~l~~ri~~l~~eL~~l~~~r~~~r--~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t----- 315 (505)
|+.+.+.|..++.............. ......+.++|+|+|+||||||||+|+|+...............|+.
T Consensus 44 ~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~ 123 (355)
T 3p32_A 44 RAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTG 123 (355)
T ss_dssp TTHHHHHHHHHHCCSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCccc
Confidence 45555555555544333222211111 11223466789999999999999999997431000000000001100
Q ss_pred --------------------eec----c---------------ccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHh
Q psy50 316 --------------------THE----G---------------MLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML 356 (505)
Q Consensus 316 --------------------~~~----~---------------~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ 356 (505)
.+. . ....+..++|+||||+.. .....+..
T Consensus 124 g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~-----------~~~~~~~~ 192 (355)
T 3p32_A 124 GSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ-----------SEVAVANM 192 (355)
T ss_dssp ---------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS-----------HHHHHHTT
T ss_pred chhccchhhHHhhccCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc-----------HHHHHHHh
Confidence 000 0 011357899999999542 11122467
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------------C-----C-CCCeE
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------------V-----T-EEYDL 417 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------------~-----~-~~~~v 417 (505)
+|++++|+|.+...... . +. .++ ...|.++|+||+|+...... . . ..+++
T Consensus 193 aD~vl~V~d~~~~~~~~---~----l~-~~~---~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 261 (355)
T 3p32_A 193 VDTFVLLTLARTGDQLQ---G----IK-KGV---LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVL 261 (355)
T ss_dssp CSEEEEEEESSTTCTTT---T----CC-TTS---GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEE
T ss_pred CCEEEEEECCCCCccHH---H----HH-HhH---hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceE
Confidence 99999999986543221 1 11 111 22489999999998643110 0 1 25799
Q ss_pred EEeccCcccHHHHHHHHHHHHhh
Q psy50 418 LISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
++||++|.|+++|+++|.+.+..
T Consensus 262 ~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 262 TMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998854
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.51 E-value=1.6e-14 Score=154.90 Aligned_cols=141 Identities=22% Similarity=0.233 Sum_probs=92.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc------------------------------ceeeeeeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPR------------------------------NQLFATLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~------------------------------d~~ftTld~t~~~~~~~~~ 324 (505)
...+|+++|.+|+|||||+|+|++....... .....|.+....... ..+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence 4578999999999999999999765211111 111223333222221 246
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChH------HHHHHHHHHHHhcCcccccCccEEEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL------QQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~------~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..+.|+||||+.. + ...+...+..||++++|+|++++... .+.......+..++. +|+|+|
T Consensus 111 ~~~~iiDTPG~~~-----f---~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-----~~iIvv 177 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----F---VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----HNLIIA 177 (483)
T ss_dssp CEEEEECCCCCGG-----G---HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-----CCEEEE
T ss_pred ceEEEEECCCcHH-----H---HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-----CcEEEE
Confidence 7899999999521 1 13356667889999999999986321 344555566666654 379999
Q ss_pred EeCCCCCCCCCCC-------------------CCCCeEEEeccCcccHHH
Q psy50 399 GNKVDAVPPGERV-------------------TEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 399 ~NKiDl~~~~~~~-------------------~~~~~v~iSA~~g~gi~e 429 (505)
+||+|+....... ...+++++||++|.|+++
T Consensus 178 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 178 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 9999997632110 024689999999999974
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.4e-15 Score=161.71 Aligned_cols=144 Identities=22% Similarity=0.243 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce------------------------------eeeeeeeeeeccccC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ------------------------------LFATLDVTTHEGMLP 322 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~------------------------------~ftTld~t~~~~~~~ 322 (505)
.+...+|+++|++|+|||||+|+|++.......+. ...|.+....... .
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-T 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-C
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-c
Confidence 35578999999999999999999997643222211 2234443332222 2
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCCh------HHHHHHHHHHHHhcCcccccCccEE
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDY------LQQKQHVDETLQHLELEEKILEHVL 396 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~------~~~~~~v~~~L~~lg~~~~~~~p~I 396 (505)
.+..+.|+||||+.. +. ..+...+..||++|+|+|++++.. ..+.......+..+++ +|+|
T Consensus 243 ~~~~~~iiDTPG~e~-----f~---~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi-----~~iI 309 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----FV---PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----HNLI 309 (611)
T ss_dssp SSCEEEEEECCSSSC-----HH---HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC-----CEEE
T ss_pred CCceEEEEECCCCcc-----cH---HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC-----CeEE
Confidence 467899999999532 11 223344567999999999987421 1234445555665554 3699
Q ss_pred EEEeCCCCCCCCCC--------C-----------CCCCeEEEeccCcccHHHH
Q psy50 397 VVGNKVDAVPPGER--------V-----------TEEYDLLISATRGTGLAQL 430 (505)
Q Consensus 397 lV~NKiDl~~~~~~--------~-----------~~~~~v~iSA~~g~gi~eL 430 (505)
+|+||+|+...... . ...+++++||++|.|++++
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999863210 0 0247899999999999876
No 163
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.50 E-value=2.5e-13 Score=133.83 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA 354 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i 354 (505)
...+|+++|.+|||||||+|+|++.....+.++..+|.+....... .++..+.++||||+... ....+.+...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~--~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT-MGGFTINIIDTPGLVEA--GYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEE-ETTEEEEEEECCCSEET--TEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEE-ECCeeEEEEECCCCCCc--ccchHHHHHHHHHH
Confidence 4578999999999999999999998755566776666655443332 24678999999998652 12222222112111
Q ss_pred ---HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 355 ---MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 355 ---~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
..+|++++|+|++..........+.+.+..... .....|+++|+||+|+...+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFG-KEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECTTCCCST
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhc-hhhhcCEEEEEeCcccCCCC
Confidence 168999999888764433333445555554311 11124899999999986443
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.49 E-value=2.1e-14 Score=155.51 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC---------------Cccc------eeeeeeeeeeeccccCCcceEEEEeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSL---------------VPRN------QLFATLDVTTHEGMLPNRLRILYVDTIG 334 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~---------------~~~d------~~ftTld~t~~~~~~~~~~~v~l~DT~G 334 (505)
...|+|+|++|||||||+|+|+..... ...+ ....|......... ..+..+.+|||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECCC
Confidence 458999999999999999999732111 0111 11222222211111 2467899999999
Q ss_pred eeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 335 FISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 335 fi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
+.. .. ..+...+..+|++++|+|++++.... ...+...+...+ .|+++|+||+|+...
T Consensus 92 ~~d-----f~---~~~~~~l~~aD~allVvDa~~g~~~~-t~~~~~~~~~~~------iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HAD-----FT---EDTYRTLTAVDSALMVIDAAKGVEPR-TIKLMEVCRLRH------TPIMTFINKMDRDTR 149 (528)
T ss_dssp STT-----CC---HHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHHTTT------CCEEEEEECTTSCCS
T ss_pred chh-----HH---HHHHHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcC------CCEEEEEeCCCCccc
Confidence 532 22 22455567899999999999876544 344455555443 499999999999654
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.49 E-value=1.3e-14 Score=155.79 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
++.++|+++|++|+|||||+++|++.. ...+.....|.+........ ++..+.|+||||+..- . .+. ...
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f-~-~~~------~~~ 71 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAF-T-SMR------ARG 71 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCC-T-TSB------CSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHH-H-HHH------HHH
Confidence 356899999999999999999998753 22333333444433322222 3568899999995321 1 111 112
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC--CC----------C----CCCeE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE--RV----------T----EEYDL 417 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~--~~----------~----~~~~v 417 (505)
+..+|++++|+|++++.... .......+...+ .|+++++||+|+...+. .. . ..+++
T Consensus 72 ~~~aD~aILVVda~~g~~~q-T~e~l~~~~~~~------vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 72 AQATDIVVLVVAADDGVMPQ-TIEAIQHAKAAQ------VPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFV 144 (501)
T ss_dssp SBSCSSEEEEEETTTBSCTT-THHHHHHHHHTT------CCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEE
T ss_pred HhhCCEEEEEeecccCccHH-HHHHHHHHHhcC------ceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEE
Confidence 44699999999998854332 222334444443 38999999999975321 10 0 14799
Q ss_pred EEeccCcccHHHHHHHHHHH
Q psy50 418 LISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~ 437 (505)
++||++|.|+++|+++|...
T Consensus 145 ~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTTT
T ss_pred EEeeeeccCcchhhhhhhhh
Confidence 99999999999999998653
No 166
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=9.7e-14 Score=128.64 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcc
Q psy50 246 LMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRL 325 (505)
Q Consensus 246 l~~ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~ 325 (505)
++.++..++++++.+..... .......++|+++|.+|||||||+|+|++...... ..+..++... .....
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~~~~~~~~~~--~~~~~ 91 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGGS----GGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAA--DYDGS 91 (193)
T ss_dssp TTTBCHHHHHHHHHHC------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCT
T ss_pred HHHHHHHHHHHHHHHHHhhc----CCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcc----cccCCCceee--eecCC
Confidence 33445555666655543321 11224568999999999999999999998752211 1111111111 11456
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCC-CCChHHHHHH-HHHHHHhcCcccccCccEEEEEeCCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVS-NPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s-~~~~~~~~~~-v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
.+.+|||||+..-. .....+ ....+..+|++++|+|++ ++........ +..++...........|+++|+||+|
T Consensus 92 ~~~l~Dt~G~~~~~--~~~~~~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 167 (193)
T 2ged_A 92 GVTLVDFPGHVKLR--YKLSDY--LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 167 (193)
T ss_dssp TCSEEEETTCCBSS--CCHHHH--HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred eEEEEECCCCchHH--HHHHHH--HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence 78899999964311 111111 112234489999999998 5544332222 22333322110012359999999999
Q ss_pred CCCCC
Q psy50 404 AVPPG 408 (505)
Q Consensus 404 l~~~~ 408 (505)
+....
T Consensus 168 l~~~~ 172 (193)
T 2ged_A 168 LFTAR 172 (193)
T ss_dssp STTCC
T ss_pred hcCCC
Confidence 86543
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.49 E-value=5.6e-14 Score=145.78 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=97.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLA 357 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~A 357 (505)
.|+++|++|+|||||+|+|+ ....|.+........ .+..+.++||||+. +.. ......+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~-----~f~---~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDK-EGRNMVFVDAHSYP-----KTL---KSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECS-SSSEEEEEECTTTT-----TCH---HHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEec-CCeEEEEEECCChH-----HHH---HHHHHHHHHC
Confidence 89999999999999999998 222333332222222 35679999999942 222 2345567889
Q ss_pred ceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE-EEEEe-CCCCCCCCCC----------C-----CCCCeEE--
Q psy50 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV-LVVGN-KVDAVPPGER----------V-----TEEYDLL-- 418 (505)
Q Consensus 358 DliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~-IlV~N-KiDl~~~~~~----------~-----~~~~~v~-- 418 (505)
|++++|+| +... ..+...+...+..+++ |. ++|+| |+|+ ..... . ...++++
T Consensus 85 D~ailVvd-~~g~-~~qt~e~~~~~~~~~i------~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~ 155 (370)
T 2elf_A 85 DIAVLCIP-PQGL-DAHTGECIIALDLLGF------KHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLN 155 (370)
T ss_dssp SEEEEEEC-TTCC-CHHHHHHHHHHHHTTC------CEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECC
T ss_pred CEEEEEEc-CCCC-cHHHHHHHHHHHHcCC------CeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 99999999 6543 4456666667776664 55 89999 9999 43210 0 1257999
Q ss_pred EeccC---cccHHHHHHHHHHHHhh
Q psy50 419 ISATR---GTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~---g~gi~eL~~~I~~~l~~ 440 (505)
+||++ |.|+++|++.|.+.+..
T Consensus 156 ~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 156 TNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccccCcCCCCHHHHHHHHHhhccc
Confidence 99999 99999999999988753
No 168
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.48 E-value=3.7e-14 Score=148.63 Aligned_cols=149 Identities=23% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC-------CCCc---cc------eeeeeeeeeeeccccCCcceEEEEeeeeeeec
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD-------SLVP---RN------QLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~-------~~~~---~d------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~ 338 (505)
...+|+++|++|+|||||+|+|++.. .... -| ....|.+...... ...+..+.++||||+..
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~~~iiDtpG~~~- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY-ETAKRHYSHVDCPGHAD- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE-ECSSCEEEEEECCCSGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEe-ccCCeEEEEEECCChHH-
Confidence 45689999999999999999998731 0000 00 1112222211111 12457899999999532
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCC-------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~------- 410 (505)
. ...+...+..+|++++|+|++++... +...+...+..+++ | +++|+||+|+....+.
T Consensus 88 ----f---~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~~i------p~iivviNK~Dl~~~~~~~~~~~~~ 153 (405)
T 2c78_A 88 ----Y---IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQVGV------PYIVVFMNKVDMVDDPELLDLVEME 153 (405)
T ss_dssp ----G---HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHTTC------CCEEEEEECGGGCCCHHHHHHHHHH
T ss_pred ----H---HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHcCC------CEEEEEEECccccCcHHHHHHHHHH
Confidence 1 13345667789999999999987643 45555666666553 6 8899999999852210
Q ss_pred -------CC----CCCeEEEeccCccc------------------HHHHHHHHHHHHh
Q psy50 411 -------VT----EEYDLLISATRGTG------------------LAQLKEKVQDMIL 439 (505)
Q Consensus 411 -------~~----~~~~v~iSA~~g~g------------------i~eL~~~I~~~l~ 439 (505)
.. ..+++++||++|.| +++|++.|.++++
T Consensus 154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 154 VRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 00 25799999999998 8899999988775
No 169
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.48 E-value=1.4e-13 Score=141.75 Aligned_cols=157 Identities=14% Similarity=0.182 Sum_probs=99.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee---------------------------------------
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT--------------------------------------- 315 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t--------------------------------------- 315 (505)
..|.|+|||.+|||||||+|+|+|......+.-. .|..++
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 6789999999999999999999997532111100 000000
Q ss_pred ---------------eeccccCCcceEEEEeeeeeeecC----CCCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHH
Q psy50 316 ---------------THEGMLPNRLRILYVDTIGFISNI----PTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQK 375 (505)
Q Consensus 316 ---------------~~~~~~~~~~~v~l~DT~Gfi~~l----p~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~ 375 (505)
.-....+....+.+|||||+.... +....+.+ ..+...+..+|++++|+|.++.....
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 000011234578999999987532 22222222 23566788899999999876544322
Q ss_pred HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC----------CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 376 QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV----------TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 376 ~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~----------~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
..+..+++.+.-. ..|+++|+||+|+....... ...+++++|+.++.|+++.+..+...
T Consensus 190 ~~~~~l~~~~~~~---~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 190 SDAIKISREVDPS---GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp CHHHHHHHHSCTT---CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhccc---CCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 2345556655432 24899999999998654321 14578999999999998776655443
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.48 E-value=6e-14 Score=153.85 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc------cceeeeeeeeee---eccccC-------CcceEEEEeeeeeeec
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP------RNQLFATLDVTT---HEGMLP-------NRLRILYVDTIGFISN 338 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~------~d~~ftTld~t~---~~~~~~-------~~~~v~l~DT~Gfi~~ 338 (505)
+.++|+|+|++|+|||||+|+|++...... .+.-....+... ...... ....+.|+||||+..-
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 468999999999999999999987531110 000000000000 000000 1125899999995321
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------- 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------- 410 (505)
..+.. ..+..+|++++|+|++++.... .......+...+ .|+++|+||+|+......
T Consensus 84 --~~~~~------r~~~~aD~aILVvDa~~Gv~~q-T~e~l~~l~~~~------vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 84 --TTLRK------RGGALADLAILIVDINEGFKPQ-TQEALNILRMYR------TPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp --TTSBC------SSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHHTT------CCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred --HHHHH------HHHhhCCEEEEEEECCCCccHh-HHHHHHHHHHcC------CeEEEEecccccccccccccCCchHH
Confidence 11111 1234599999999999864333 333444555443 499999999999753210
Q ss_pred ----------------------------------------CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 ----------------------------------------VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 ----------------------------------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
....+++++||++|.|+++|+++|...++.
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 001278999999999999999999988764
No 171
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=2e-13 Score=141.40 Aligned_cols=89 Identities=28% Similarity=0.324 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccC--------------------CcceEEEEeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--------------------NRLRILYVDTIGFI 336 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~--------------------~~~~v~l~DT~Gfi 336 (505)
.+|+|||.||||||||+|+|++.. +...+++|+|++++......+ .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999875 567888999888766543322 13579999999987
Q ss_pred ecCCCCCcchh-hhhHHHHHhhceeEEEeeCCC
Q psy50 337 SNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSN 368 (505)
Q Consensus 337 ~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~ 368 (505)
...+. .+.+ ...+..++.+|++++|+|+++
T Consensus 81 ~~a~~--~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK--GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS--SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc--cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 63321 2222 345677889999999999985
No 172
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=3e-13 Score=139.57 Aligned_cols=89 Identities=28% Similarity=0.357 Sum_probs=63.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCc----------------ceEEEEeeeeeeecCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR----------------LRILYVDTIGFISNIP 340 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~----------------~~v~l~DT~Gfi~~lp 340 (505)
.+|+|||.||||||||+|+|++.. +.+.+++|+|++++......++. ..+.++||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 579999999999999999999987 66789999999887655444432 5799999999874211
Q ss_pred CCCcchh-hhhHHHHHhhceeEEEeeCCC
Q psy50 341 TTLLEPF-KVTLEDAMLADIIIHVVDVSN 368 (505)
Q Consensus 341 ~~lie~f-~~tle~i~~ADliL~VvD~s~ 368 (505)
..+.+ ...+..++.+|+++||+|+++
T Consensus 82 --~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 --KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp --HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred --ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 01112 234667889999999999986
No 173
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.46 E-value=4.9e-13 Score=132.18 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH-
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED- 353 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~- 353 (505)
...+|+++|.+|+|||||+|+|++.....+.+...+|.+...... ...+..+.++||||+.... ...+.+...+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~l~iiDTpG~~~~~--~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGG--YINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE-EETTEEEEEEECCCSEETT--EECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE-eeCCeEEEEEECCCCCCCc--cchHHHHHHHHHH
Confidence 457899999999999999999999875445565555554332222 2346789999999986521 122222112221
Q ss_pred --HHhhceeEEEeeCCCCChHHHHHHHHHHHHhc-CcccccCccEEEEEeCCCCCCCC
Q psy50 354 --AMLADIIIHVVDVSNPDYLQQKQHVDETLQHL-ELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 354 --i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~l-g~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
...+|++++|+|++..........+...+... +.. ...|+++|+||+|+...+
T Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCcC
Confidence 12589999998876533222233455555433 311 124899999999986543
No 174
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=8.1e-14 Score=132.05 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=77.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....++|+++|++|||||||+|+|++...... ..+..++... ......+.++||||+.. .... ...
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~~~~~~~~~~--~~~~~~~~l~Dt~G~~~-----~~~~---~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAA--DYDGSGVTLVDFPGHVK-----LRYK---LSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEET--TGGGSSCEEEECCCCGG-----GTHH---HHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----eeecCceEEE--EeeCceEEEEECCCcHH-----HHHH---HHH
Confidence 34678999999999999999999998752211 1111111111 11456789999999632 1111 122
Q ss_pred HHHh----hceeEEEeeCC-CCChHHHH-HHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC------C--------
Q psy50 353 DAML----ADIIIHVVDVS-NPDYLQQK-QHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV------T-------- 412 (505)
Q Consensus 353 ~i~~----ADliL~VvD~s-~~~~~~~~-~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~------~-------- 412 (505)
.+.. +|++++|+|++ ++...... ..+.+++...........|+++|+||+|+....... .
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 154 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 154 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence 2333 89999999998 55443322 333334433211001235999999999997765321 0
Q ss_pred --CCCeEEEeccCccc
Q psy50 413 --EEYDLLISATRGTG 426 (505)
Q Consensus 413 --~~~~v~iSA~~g~g 426 (505)
..+++++||++|.+
T Consensus 155 ~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 RRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHC--------
T ss_pred HHhccccccccccccc
Confidence 23567888888764
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.44 E-value=2.3e-13 Score=143.90 Aligned_cols=139 Identities=22% Similarity=0.226 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc----------eee----------------------eeeeeeeeccccC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN----------QLF----------------------ATLDVTTHEGMLP 322 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d----------~~f----------------------tTld~t~~~~~~~ 322 (505)
...+|+++|++|+|||||+|+|++.......+ ... .|.+...... ..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~-~~ 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF-ST 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-EC
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-ec
Confidence 34689999999999999999998653111111 111 1111111111 12
Q ss_pred CcceEEEEeeeeeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
.+..+.++||||+. .| ......+..+|++++|+|++++... +...+...+..++. +|+++|+||
T Consensus 102 ~~~~~~iiDtpGh~---------~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~~-----~~iIvviNK 166 (434)
T 1zun_B 102 AKRKFIIADTPGHE---------QYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLGI-----KHIVVAINK 166 (434)
T ss_dssp SSEEEEEEECCCSG---------GGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTTC-----CEEEEEEEC
T ss_pred CCceEEEEECCChH---------HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcCC-----CeEEEEEEc
Confidence 45679999999942 22 2234567889999999999987643 34445556666553 369999999
Q ss_pred CCCCCCCCC--------------CCC-----CCeEEEeccCcccHHH
Q psy50 402 VDAVPPGER--------------VTE-----EYDLLISATRGTGLAQ 429 (505)
Q Consensus 402 iDl~~~~~~--------------~~~-----~~~v~iSA~~g~gi~e 429 (505)
+|+...+.. ... .+++++||++|.|+++
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 999863210 002 4689999999999997
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.44 E-value=1.4e-14 Score=158.93 Aligned_cols=152 Identities=21% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc------------------------------eeeeeeeeeeeccccCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN------------------------------QLFATLDVTTHEGMLPN 323 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d------------------------------~~ftTld~t~~~~~~~~ 323 (505)
+....|+++|++|+|||||+|+|++.......+ ....|.+........ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 345679999999999999999996431111100 223344443322222 3
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCC----h--HHHHHHHHHHHHhcCcccccCccEEE
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD----Y--LQQKQHVDETLQHLELEEKILEHVLV 397 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~----~--~~~~~~v~~~L~~lg~~~~~~~p~Il 397 (505)
+..+.|+||||+.. +... +...+..||++|+|+|++++. . ..+.......+..++++ ++|+
T Consensus 254 ~~~i~iiDTPGh~~-----f~~~---~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip-----~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRD-----FISG---MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGIS-----EIVV 320 (592)
T ss_dssp -----CCEEESSSE-----EEEE---CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCC-----CEEE
T ss_pred CeEEEEEECCChHH-----HHHH---HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCC-----eEEE
Confidence 57899999999542 1111 223345699999999998642 0 22344455666666641 4899
Q ss_pred EEeCCCCCCCCCC------------C----C----CCCeEEEeccCcccHH--------------HHHHHHHHHHh
Q psy50 398 VGNKVDAVPPGER------------V----T----EEYDLLISATRGTGLA--------------QLKEKVQDMIL 439 (505)
Q Consensus 398 V~NKiDl~~~~~~------------~----~----~~~~v~iSA~~g~gi~--------------eL~~~I~~~l~ 439 (505)
|+||+|+...... . . ..+++++||++|.|++ .|++.|...++
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 9999999762210 0 1 1268999999999998 78888876553
No 177
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=1e-13 Score=131.81 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-----ccceeeeeee-----------
Q psy50 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLV-----PRNQLFATLD----------- 313 (505)
Q Consensus 250 i~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-----~~d~~ftTld----------- 313 (505)
|..+++.|+.........+......+.+.|+++|++|||||||+|+|++..... ...-...+.+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~ 83 (221)
T 2wsm_A 4 YELNQDLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKA 83 (221)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEE
T ss_pred ehHhHHHHhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcE
Confidence 334445555554444444433333467899999999999999999998652110 0000011100
Q ss_pred --eeeec-cc-----------cCCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHH
Q psy50 314 --VTTHE-GM-----------LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVD 379 (505)
Q Consensus 314 --~t~~~-~~-----------~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~ 379 (505)
..... .. ...+..++++||+|.... |.. .. ..++.+++|+|+++..... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~iiidt~G~~~~-~~~-~~---------~~~~~~i~vvd~~~~~~~~-----~ 147 (221)
T 2wsm_A 84 EAISTGKECHLDAHMIYHRLKKFSDCDLLLIENVGNLIC-PVD-FD---------LGENYRVVMVSVTEGDDVV-----E 147 (221)
T ss_dssp EECCCTTCSSCCHHHHHTTGGGGTTCSEEEEEEEEBSSG-GGG-CC---------CSCSEEEEEEEGGGCTTHH-----H
T ss_pred EEecCCceeecccHHHHHHHHhcCCCCEEEEeCCCCCCC-Cch-hc---------cccCcEEEEEeCCCcchhh-----h
Confidence 00000 00 113457899999995221 211 10 1357889999988764211 1
Q ss_pred HHHHhcCcccccCccEEEEEeCCCCCCCC--CC----------CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 380 ETLQHLELEEKILEHVLVVGNKVDAVPPG--ER----------VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 380 ~~L~~lg~~~~~~~p~IlV~NKiDl~~~~--~~----------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
...... ..|.++|+||+|+.... .. ....+++++||++|.|+++|+++|.+.+.
T Consensus 148 ~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 148 KHPEIF------RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HCHHHH------HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhhhhh------hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 111111 14889999999986431 11 01357899999999999999999998874
No 178
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.43 E-value=9.8e-14 Score=145.11 Aligned_cols=148 Identities=22% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC-----CCc----cc------eeeeeeeeeeeccccCCcceEEEEeeeeeeecCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDS-----LVP----RN------QLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~-----~~~----~d------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp 340 (505)
..+|+++|++|+|||||+|+|++... ... -+ ....|.+...... ...+..+.++||||+..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY-STAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE-ECSSCEEEEEECSSHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEe-ccCCeEEEEEECCChHH---
Confidence 35799999999999999999987410 000 00 1122333221111 12457899999999532
Q ss_pred CCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCC--------
Q psy50 341 TTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGER-------- 410 (505)
Q Consensus 341 ~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~-------- 410 (505)
| ..+...+..+|++++|+|++++.... .......+..+++ | +++|+||+|+....+.
T Consensus 79 ------f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~~v------p~iivviNK~Dl~~~~~~~~~~~~~~ 145 (397)
T 1d2e_A 79 ------YVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIGV------EHVVVYVNKADAVQDSEMVELVELEI 145 (397)
T ss_dssp ------HHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTTC------CCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred ------HHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHcCC------CeEEEEEECcccCCCHHHHHHHHHHH
Confidence 2 22344466799999999999875443 3344456665553 6 6899999999752210
Q ss_pred ------CC----CCCeEEEeccCccc----------HHHHHHHHHHHHhh
Q psy50 411 ------VT----EEYDLLISATRGTG----------LAQLKEKVQDMILK 440 (505)
Q Consensus 411 ------~~----~~~~v~iSA~~g~g----------i~eL~~~I~~~l~~ 440 (505)
.. ..+++++||++|.| +++|++.|.+.++.
T Consensus 146 ~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 01 24899999999874 89999999987753
No 179
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.43 E-value=3.7e-13 Score=147.54 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=92.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCc----cceeee----------eeeeeeecccc----CCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVP----RNQLFA----------TLDVTTHEGML----PNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~----~d~~ft----------Tld~t~~~~~~----~~~~~v~l~DT~Gfi~ 337 (505)
...|+|+|++|+|||||+++|+....... .+.... |.........+ .....+.+|||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 45799999999999999999986321111 111111 11111111111 1236789999999532
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------- 410 (505)
.. ......+..+|.+++|+|++++........+... ...+ .|+++|+||+|+...+..
T Consensus 84 -----F~---~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~-~~~~------ipiIvViNKiDl~~a~~~~v~~ei~ 148 (599)
T 3cb4_D 84 -----FS---YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA-MEMD------LEVVPVLNKIDLPAADPERVAEEIE 148 (599)
T ss_dssp -----GH---HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH-HHTT------CEEEEEEECTTSTTCCHHHHHHHHH
T ss_pred -----HH---HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HHCC------CCEEEeeeccCcccccHHHHHHHHH
Confidence 11 1234456779999999999987655434433333 3333 489999999999764321
Q ss_pred --C--CCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 --V--TEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 --~--~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
. ...+++++||++|.|+++|+++|.+.++.
T Consensus 149 ~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 149 DIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 0 12358999999999999999999998864
No 180
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.43 E-value=3.8e-13 Score=147.33 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=93.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCC----ccceeeeeee------eeee----cccc----CCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLV----PRNQLFATLD------VTTH----EGML----PNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~----~~d~~ftTld------~t~~----~~~~----~~~~~v~l~DT~Gfi~ 337 (505)
...|+|+|++|+|||||+++|+...... .++....+.+ +|.. ...+ .....+.+|||||+..
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4589999999999999999997531110 0111111111 1110 1111 1136788999999642
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-------
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------- 410 (505)
.. ......+..+|.+++|+|++++........+.. +...+ .|+++|+||+|+...+..
T Consensus 86 -----F~---~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~-a~~~~------ipiIvviNKiDl~~a~~~~v~~el~ 150 (600)
T 2ywe_A 86 -----FS---YEVSRALAACEGALLLIDASQGIEAQTVANFWK-AVEQD------LVIIPVINKIDLPSADVDRVKKQIE 150 (600)
T ss_dssp -----GH---HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH-HHHTT------CEEEEEEECTTSTTCCHHHHHHHHH
T ss_pred -----HH---HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH-HHHCC------CCEEEEEeccCccccCHHHHHHHHH
Confidence 11 123345677999999999998865543333333 33333 489999999999764321
Q ss_pred --CC--CCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 411 --VT--EEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 411 --~~--~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
.. ..+++++||++|.|+++|+++|.+.++.
T Consensus 151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 151 EVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 01 1258999999999999999999998864
No 181
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.41 E-value=3.6e-13 Score=137.00 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=96.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcc-hhhhhHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLE-PFKVTLEDAML 356 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie-~f~~tle~i~~ 356 (505)
+|.++|.+|||||||++++.+...+........|..+.... ......+.+|||+|.-+ ... .+ .+...++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v~~~v~LqIWDTAGQEr-----f~~~~l-~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--FSTLIDLAVMELPGQLN-----YFEPSY-DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--ECSSSCEEEEECCSCSS-----SCCCSH-HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--EccEEEEEEEECCCchh-----ccchhh-hhhhhccC
Confidence 47899999999999999988764221111223333332221 12357899999999321 111 01 12345788
Q ss_pred hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC---------------CCC------CCC
Q psy50 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE---------------RVT------EEY 415 (505)
Q Consensus 357 ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~---------------~~~------~~~ 415 (505)
|+++++|+|++++ .......+.+++..+.- ...+.|+++|+||+|+...+. ... ..+
T Consensus 73 a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 73 VGALVYVIDSQDE-YINAITNLAMIIEYAYK-VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp CSEEEEECCCSSC-TTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred CCEEEEEEECCch-HHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999999987 44444555555544311 012359999999999976421 011 246
Q ss_pred eEEEeccCcccHHHHHHHHHHHH
Q psy50 416 DLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 416 ~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
++++||++ .++.+.+..|.+.+
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTS
T ss_pred EEEeccCC-CcHHHHHHHHHHHH
Confidence 89999998 58999998886554
No 182
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=1.7e-12 Score=141.31 Aligned_cols=127 Identities=27% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC--Cccceeeeeeeeeeeccc-------------------------------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQLFATLDVTTHEGM------------------------------- 320 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~ftTld~t~~~~~------------------------------- 320 (505)
...+.|+|+|.+|||||||+|+|++.... .+++.+.++....+....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998643 244444443211111000
Q ss_pred -----cCCc--ceEEEEeeeeeeecCCCCCcch--h-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccc
Q psy50 321 -----LPNR--LRILYVDTIGFISNIPTTLLEP--F-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK 390 (505)
Q Consensus 321 -----~~~~--~~v~l~DT~Gfi~~lp~~lie~--f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~ 390 (505)
.+.. .++.|+||||+....+..+... | ..+...+..+|++++|+|+++.........+.+.+...+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~---- 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE---- 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG----
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC----
Confidence 0000 3689999999875222222222 2 234456778999999999987543333444444444322
Q ss_pred cCccEEEEEeCCCCCC
Q psy50 391 ILEHVLVVGNKVDAVP 406 (505)
Q Consensus 391 ~~~p~IlV~NKiDl~~ 406 (505)
.|+++|+||+|+..
T Consensus 219 --~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 219 --DKIRVVLNKADMVE 232 (550)
T ss_dssp --GGEEEEEECGGGSC
T ss_pred --CCEEEEEECCCccC
Confidence 48999999999864
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=5.2e-13 Score=138.00 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcccee------eeeeeeeeeccccC-C--cceEEEEeeeeeeecCC-----
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL------FATLDVTTHEGMLP-N--RLRILYVDTIGFISNIP----- 340 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~------ftTld~t~~~~~~~-~--~~~v~l~DT~Gfi~~lp----- 340 (505)
....|+|+|++|+|||||+|+|++......+... ..|........... . ...+.+|||||+.....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3467999999999999999999887533222111 12222221111111 2 24689999999843211
Q ss_pred CCCcc----hhhhhHHHHHh----------hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 341 TTLLE----PFKVTLEDAML----------ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 341 ~~lie----~f~~tle~i~~----------ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
..+.. .|...+..... +|+++++++.+......... .+++.+. ...|+|+|+||+|+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~---~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH---HHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH---HHHHHhc----cCCCEEEEEECCCCCC
Confidence 01111 11122222111 13566776653222222222 3344443 1259999999999976
Q ss_pred CCCC------------CCCCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 407 PGER------------VTEEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 407 ~~~~------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
..+. ....+++++||++|.| ++.+..+.+.+.+.
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 4321 0145789999999998 77777766666543
No 184
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.34 E-value=7.7e-13 Score=139.96 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc------------------------------eeeeeeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN------------------------------QLFATLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d------------------------------~~ftTld~t~~~~~~~~~ 324 (505)
...+|+++|++|+|||||+|+|++........ ....|.+....... ..+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCC
Confidence 34689999999999999999998641011100 12234433322221 245
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCC------hHHHHHHHHHHHHhcCcccccCccEEEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD------YLQQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~------~~~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
..+.++||||+.. .. ..+...+..+|++++|+|+++.. ...+.......+..+++ .|+++|
T Consensus 84 ~~~~iiDtpG~~~-----f~---~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~-----~~iivv 150 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----FV---KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGL-----DQLIVA 150 (435)
T ss_dssp CEEEECCCSSSTT-----HH---HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTC-----TTCEEE
T ss_pred eEEEEEECCCcHH-----HH---HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----CeEEEE
Confidence 7899999999431 11 22344567799999999999842 11234445555555554 268999
Q ss_pred EeCCCCCCCCC---C--------------CC----CCCeEEEeccCcccHHHH
Q psy50 399 GNKVDAVPPGE---R--------------VT----EEYDLLISATRGTGLAQL 430 (505)
Q Consensus 399 ~NKiDl~~~~~---~--------------~~----~~~~v~iSA~~g~gi~eL 430 (505)
+||+|+...+. . .. ..+++++||++|.|+.++
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 99999986321 0 00 156999999999999743
No 185
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.33 E-value=2.3e-13 Score=144.97 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-CCCc-----------------------cce------eeeeeeeeeeccccCCcc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDD-SLVP-----------------------RNQ------LFATLDVTTHEGMLPNRL 325 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~-~~~~-----------------------~d~------~ftTld~t~~~~~~~~~~ 325 (505)
..+|+++|++|+|||||+|+|++.. .... .|. ...|.+....... ..+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCCc
Confidence 4689999999999999999998641 1100 010 1123332222111 2456
Q ss_pred eEEEEeeeeeeecCCCCCcchh-hhhHHHHHhhceeEEEeeCCCCChH------HHHHHHHHHHHhcCcccccCccEEEE
Q psy50 326 RILYVDTIGFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYL------QQKQHVDETLQHLELEEKILEHVLVV 398 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~------~~~~~v~~~L~~lg~~~~~~~p~IlV 398 (505)
.+.++||||+. .| ..+...+..+|++++|+|++++... .+.......+..+++ .++++|
T Consensus 86 ~~~iiDtPGh~---------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v-----~~iivv 151 (458)
T 1f60_A 86 QVTVIDAPGHR---------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV-----RQLIVA 151 (458)
T ss_dssp EEEEEECCCCT---------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred eEEEEECCCcH---------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC-----CeEEEE
Confidence 89999999942 22 2234456789999999999875322 033334445555553 248999
Q ss_pred EeCCCCCCCCCC---------------CC----CCCeEEEeccCcccHHHH
Q psy50 399 GNKVDAVPPGER---------------VT----EEYDLLISATRGTGLAQL 430 (505)
Q Consensus 399 ~NKiDl~~~~~~---------------~~----~~~~v~iSA~~g~gi~eL 430 (505)
+||+|+...+.. .. ..+++++||++|.|++++
T Consensus 152 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 152 VNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999999742210 00 157999999999998743
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.32 E-value=1.5e-12 Score=139.04 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCc------------------------cc------eeeeeeeeeeeccccCCc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVP------------------------RN------QLFATLDVTTHEGMLPNR 324 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~------------------------~d------~~ftTld~t~~~~~~~~~ 324 (505)
...+|+++|++|+|||||+|+|+....... -| ....|++....... .++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~~ 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TEH 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CSS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cCC
Confidence 446899999999999999999974221110 01 11223333222122 246
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChH------HHHHHHHHHHHhcCcccccCcc-EEE
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL------QQKQHVDETLQHLELEEKILEH-VLV 397 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~------~~~~~v~~~L~~lg~~~~~~~p-~Il 397 (505)
..+.++||||+.. +. ......+..+|++++|+|++++... .+.......+..+++ | +++
T Consensus 121 ~~~~iiDtPGh~~-----f~---~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~v------p~iiv 186 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-----YV---TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI------NHLVV 186 (467)
T ss_dssp EEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTC------SSEEE
T ss_pred eEEEEEECCCcHH-----HH---HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCC------CEEEE
Confidence 7899999999532 11 1123445679999999999986321 123333444555553 5 899
Q ss_pred EEeCCCCCCCCC-----------C------C-C-----CCCeEEEeccCcccHHHHH
Q psy50 398 VGNKVDAVPPGE-----------R------V-T-----EEYDLLISATRGTGLAQLK 431 (505)
Q Consensus 398 V~NKiDl~~~~~-----------~------~-~-----~~~~v~iSA~~g~gi~eL~ 431 (505)
|+||+|+...+. . . . ..+++++||++|.|+++++
T Consensus 187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 187 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 999999964220 0 0 1 1358999999999998744
No 187
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=2.3e-11 Score=126.84 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC----------------cceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN----------------RLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~----------------~~~v~l~DT~Gfi~ 337 (505)
..+.+|+|+|+||||||||+|+|++.....+.+++|+|++++...+..++ +..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 45789999999999999999999998754788999999988766554443 13589999999886
Q ss_pred cCCCCCcchh-hhhHHHHHhhceeEEEeeCCC
Q psy50 338 NIPTTLLEPF-KVTLEDAMLADIIIHVVDVSN 368 (505)
Q Consensus 338 ~lp~~lie~f-~~tle~i~~ADliL~VvD~s~ 368 (505)
... ..+.+ ...+..++.+|.+++|+|+++
T Consensus 98 ~~s--~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GAS--TGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCC--SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCc--HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 432 12222 234667888999999999874
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.31 E-value=7.5e-12 Score=135.56 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCC--c---c---ceeeeeee---------eeeec--c-ccCCcceEEEEeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLV--P---R---NQLFATLD---------VTTHE--G-MLPNRLRILYVDTIGF 335 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~--~---~---d~~ftTld---------~t~~~--~-~~~~~~~v~l~DT~Gf 335 (505)
..+|+|+|++|||||||+|+|++..... . . +...++.| ++... . ....+..+.++||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4689999999999999999998642111 0 0 00011111 11100 0 0124678999999995
Q ss_pred eecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 336 i~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
. +... .+...+..+|.+++|+|++++.. .+...+...+...+ .|+++|+||+|+...
T Consensus 93 ~-----df~~---~~~~~l~~aD~~IlVvDa~~g~~-~~t~~~~~~~~~~~------ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 E-----DFSE---DTYRTLTAVDCCLMVIDAAKGVE-DRTRKLMEVTRLRD------TPILTFMNKLDRDIR 149 (529)
T ss_dssp T-----TCCH---HHHHGGGGCSEEEEEEETTTCSC-HHHHHHHHHHTTTT------CCEEEEEECTTSCCS
T ss_pred h-----hHHH---HHHHHHHHCCEEEEEEeCCccch-HHHHHHHHHHHHcC------CCEEEEEcCcCCccc
Confidence 3 2221 23445678999999999998754 33444555554433 489999999998653
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.30 E-value=2e-12 Score=148.80 Aligned_cols=148 Identities=21% Similarity=0.126 Sum_probs=96.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CC-----ccc------eeeeeeeeeeeccccCCcceEEEEeeeeeeecC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDS----LV-----PRN------QLFATLDVTTHEGMLPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~----~~-----~~d------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~l 339 (505)
...+|+++|++|+|||||+++|++... .. .-| ....|.+...... ...+..+.++||||+..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f-~~~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-DTPTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE-ECSSCEEEEEECCCHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE-cCCCEEEEEEECCChHH--
Confidence 456899999999999999999987410 00 000 1112222211111 12457899999999532
Q ss_pred CCCCcchh-hhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCCCCCCCCCC-------
Q psy50 340 PTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKVDAVPPGER------- 410 (505)
Q Consensus 340 p~~lie~f-~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKiDl~~~~~~------- 410 (505)
| ..+...+..+|++|+|+|++++... +...+...+..+++ | +|+|+||+|+....+.
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~lgI------P~IIVVINKiDLv~d~e~le~i~eE 437 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQVGV------PYIIVFLNKCDMVDDEELLELVEME 437 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHHTC------SCEEEEEECCTTCCCHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHcCC------CeEEEEEeecccccchhhHHHHHHH
Confidence 2 2234456679999999999987543 34444555665554 6 7899999999853211
Q ss_pred -------C----CCCCeEEEeccCc--------ccHHHHHHHHHHHHh
Q psy50 411 -------V----TEEYDLLISATRG--------TGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 -------~----~~~~~v~iSA~~g--------~gi~eL~~~I~~~l~ 439 (505)
. ...+++++||++| .|+++|++.|.+.++
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 0 0257999999999 689999999988765
No 190
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.30 E-value=1.6e-11 Score=137.14 Aligned_cols=117 Identities=17% Similarity=0.122 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC-------Cc----cc------eeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL-------VP----RN------QLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~-------~~----~d------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
...+|+|+|++|+|||||+|+|+..... .. .| ....|+........ ..+..+.++||||+..
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCccc
Confidence 3568999999999999999999832100 00 01 11122222111111 2467899999999532
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
+. ..+...+..+|++++|+|++++...... .+...+...+ .|+++|+||+|+...
T Consensus 90 -----f~---~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~~~~~~------~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 -----FT---IEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQAEKYK------VPRIAFANKMDKTGA 144 (691)
T ss_dssp -----CH---HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHTT------CCEEEEEECTTSTTC
T ss_pred -----hH---HHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHHHHHcC------CCEEEEEECCCcccC
Confidence 11 2245567789999999999987655433 3344444443 489999999999754
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=1.3e-12 Score=127.45 Aligned_cols=110 Identities=16% Similarity=0.100 Sum_probs=66.4
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHH-HHHhcCcccccCccEEEEEeCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDE-TLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~-~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
..++++||||+....+ .........+.+.. +++++|+|++............. .+.... ....|+++|+||+|
T Consensus 109 ~d~iiiDtpG~~~~~~--~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFL--FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVD 182 (262)
T ss_dssp CSEEEEECCSSHHHHH--HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGG
T ss_pred CCEEEEeCCCccchhh--hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccc
Confidence 4899999999764211 00001111123345 89999999865433322221111 111111 11248999999999
Q ss_pred CCCCCCC--------------------------------------CCCCCeEEEeccCcccHHHHHHHHHHHHhh
Q psy50 404 AVPPGER--------------------------------------VTEEYDLLISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 404 l~~~~~~--------------------------------------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+...... ....+++++||++|.|+++|+++|.+.+..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 183 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 8753210 012378999999999999999999988753
No 192
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=1.6e-11 Score=137.15 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC-----------ccc------eeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLV-----------PRN------QLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-----------~~d------~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
...+|+|+|++|||||||+|+|++..... ..| ....|+........ ..+..+.++||||+..
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCcc
Confidence 45689999999999999999998421000 111 11122222111111 2467899999999642
Q ss_pred cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 338 ~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
+.. .+...+..+|++++|+|++++.... ...++..+...+ .|+++|+||+|+...
T Consensus 88 -----f~~---~~~~~l~~aD~~llVvDa~~g~~~~-~~~~~~~~~~~~------~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 -----FTV---EVERSLRVLDGAVTVLDAQSGVEPQ-TETVWRQATTYG------VPRIVFVNKMDKLGA 142 (693)
T ss_dssp -----CCH---HHHHHHHHCSEEEEEEETTTBSCHH-HHHHHHHHHHTT------CCEEEEEECTTSTTC
T ss_pred -----hHH---HHHHHHHHCCEEEEEECCCCCCcHH-HHHHHHHHHHcC------CCEEEEEECCCcccc
Confidence 221 2345567799999999999876554 334444455443 499999999999754
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.27 E-value=2.6e-12 Score=122.46 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee-------------
Q psy50 249 REQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT------------- 315 (505)
Q Consensus 249 ri~~l~~eL~~l~~~r~~~r~~r~~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t------------- 315 (505)
+|+.+++.++......+..|........++|+|+|.+|||||||+++|+...... ........++.
T Consensus 11 ~i~~~~~~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~~~~ 89 (226)
T 2hf9_A 11 VLDIAKDILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEKHGA 89 (226)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHTTTC
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHhcCC
Confidence 3444455555554444444444334467899999999999999999998652110 00000000100
Q ss_pred ----ee-c--ccc-------------CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHH
Q psy50 316 ----TH-E--GML-------------PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQK 375 (505)
Q Consensus 316 ----~~-~--~~~-------------~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~ 375 (505)
.. . ..+ ..+..++++||+|++.. + ..|. ...+.++.|+|+....... .
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~d~~~id~~g~i~~-~----~s~~------~~~~~~~~v~~~~~~~~~~-~ 157 (226)
T 2hf9_A 90 KVVPLNTGKECHLDAHLVGHALEDLNLDEIDLLFIENVGNLIC-P----ADFD------LGTHKRIVVISTTEGDDTI-E 157 (226)
T ss_dssp EEEEEECTTCSSCCHHHHHHHHTTSCGGGCSEEEEECCSCSSG-G----GGCC------CSCSEEEEEEEGGGCTTTT-T
T ss_pred cEEEecCCceEeccHHHHHHHHHHHhcCCCCEEEEeCCCCccC-c----chhh------hccCcEEEEEecCcchhhH-h
Confidence 00 0 000 01236788888885421 1 1111 1234566777754322111 0
Q ss_pred HHHHHHHHhcCcccccCccEEEEEeCCCCCCCC--CC----------CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 376 QHVDETLQHLELEEKILEHVLVVGNKVDAVPPG--ER----------VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 376 ~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~--~~----------~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
. .... + ..|.++|+||+|+.... .. ....+++++||++|.|+++|++.|.+.+.
T Consensus 158 ~-~~~~---~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 158 K-HPGI---M------KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp T-CHHH---H------TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred h-hhhH---h------hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 0 0111 1 14889999999986531 11 01357999999999999999999988774
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.23 E-value=2.6e-11 Score=134.75 Aligned_cols=116 Identities=22% Similarity=0.151 Sum_probs=74.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC--Cccce---------------eeeeeeeeeeccccCCcceEEEEeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQ---------------LFATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~---------------~ftTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
..+.+|+|+|++|+|||||+++|++.... ..+.+ ...|........ ......+.++||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCcc
Confidence 35678999999999999999999954311 11110 001111111111 1246788999999943
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
. .. ..+...+..+|.+++|+|+++.... +...+...+...+ .|+++|+||+|+.
T Consensus 86 ~-----f~---~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~~~------ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 D-----FV---GEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAERLG------LPRMVVVTKLDKG 139 (665)
T ss_dssp G-----GH---HHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHTT------CCEEEEEECGGGC
T ss_pred c-----hH---HHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHHcc------CCEEEEecCCchh
Confidence 2 11 2345567789999999999877543 3445555565544 3899999999986
No 195
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.23 E-value=8.2e-11 Score=131.53 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-------cc----c------eeeeeeeeeeeccccC------CcceEEEE
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV-------PR----N------QLFATLDVTTHEGMLP------NRLRILYV 330 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-------~~----d------~~ftTld~t~~~~~~~------~~~~v~l~ 330 (505)
.....|+|+|++|+|||||+++|+...... .+ | ....|.........+. ....+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 346789999999999999999996431110 00 0 0111222111111111 12789999
Q ss_pred eeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 331 DTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 331 DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
||||... .. ..+...+..+|.+|+|+|+++..... ...+...+...+ .|+++|+||+|+...
T Consensus 88 DTPG~~d-----f~---~~~~~~l~~aD~aIlVvDa~~gv~~q-t~~~~~~~~~~~------ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVD-----FT---IEVERSMRVLDGAVMVYCAVGGVQPQ-SETVWRQANKYK------VPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccc-----hH---HHHHHHHHHCCEEEEEEeCCCCCcHH-HHHHHHHHHHcC------CCEEEEEeCCCcccc
Confidence 9999542 11 12345567799999999999875433 334444444433 489999999998653
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.14 E-value=4.5e-11 Score=124.55 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCC----------------cceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN----------------RLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~----------------~~~v~l~DT~Gfi~ 337 (505)
..+.+|+|||.||||||||+|+|++.. ..+.+++|+|.++....+..++ ...+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 456789999999999999999999987 4678999999987765544432 23589999999876
Q ss_pred cCCCCCcchh-hhhHHHHHhhceeEEEeeCCC
Q psy50 338 NIPTTLLEPF-KVTLEDAMLADIIIHVVDVSN 368 (505)
Q Consensus 338 ~lp~~lie~f-~~tle~i~~ADliL~VvD~s~ 368 (505)
... ..+.+ ...+..++.+|+++||+|+++
T Consensus 99 ~as--~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAH--NGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccc--hhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 322 12222 235677889999999999975
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.10 E-value=3.2e-10 Score=123.30 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC---------------Ccccee------eeeeeeeeeccccCCcceEEEEeeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSL---------------VPRNQL------FATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~---------------~~~d~~------ftTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
.|||+|+.++|||||..+|+-.... ...|.. ..|+....-... .++..+.++||||+.
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCCCGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCCCcH
Confidence 7999999999999999998622111 011110 001111111111 257889999999965
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
+ .... +...++-+|..|+|+|+..+.. .|.+.+++.+.+.++ |.++++||+|....
T Consensus 112 D-----F~~E---v~raL~~~DgAvlVvda~~GV~-~qT~~v~~~a~~~~l------p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 112 D-----FSED---TYRVLTAVDSALVVIDAAKGVE-AQTRKLMDVCRMRAT------PVMTFVNKMDREAL 167 (548)
T ss_dssp G-----CSHH---HHHHHHSCSEEEEEEETTTBSC-HHHHHHHHHHHHTTC------CEEEEEECTTSCCC
T ss_pred H-----HHHH---HHHHHHhcCceEEEeecCCCcc-cccHHHHHHHHHhCC------ceEEEEecccchhc
Confidence 3 3323 3444566999999999998764 467777888887765 89999999998654
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=119.63 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=66.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCcc--cee---eeeeeeeeecccc-CC--cceEEEEeeeeeeecCCC-CCcchh
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPR--NQL---FATLDVTTHEGML-PN--RLRILYVDTIGFISNIPT-TLLEPF 347 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~--d~~---ftTld~t~~~~~~-~~--~~~v~l~DT~Gfi~~lp~-~lie~f 347 (505)
..|+|+|++|||||||+|+|+|...+..+ ... ..|.......... .. ...+.++||+|+...... .....+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 46899999999999999999998643222 000 0111110001111 11 236889999998542110 001111
Q ss_pred h----hhHHH------------HHh--hceeEEEeeCC-CCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 348 K----VTLED------------AML--ADIIIHVVDVS-NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 348 ~----~tle~------------i~~--ADliL~VvD~s-~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
. ..+.. +.. +++++++++.+ +..... ...+...|.. ..|+|+|+||+|+....
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~-d~~~lk~L~~-------~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL-DIEFMKRLHE-------KVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH-HHHHHHHHTT-------TSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH-HHHHHHHHhc-------cCcEEEEEEcccCccHH
Confidence 0 00111 112 34566666554 333222 2233333321 24899999999997643
Q ss_pred CCC------------CCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 409 ERV------------TEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 409 ~~~------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+.. ...+++.+||+++.++++++..|.+.++
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 321 1467889999999999998887777654
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=1.2e-11 Score=128.27 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=75.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC-----CCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchh-hhh
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD-----DSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPF-KVT 350 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~-----~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f-~~t 350 (505)
..|+++|.||+|||||+|+|++. ....+++.+++|.+..... + +..+.++|||||... +.+.+.+ ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~--~~~~~~l~~~~ 236 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L--ESGATLYDTPGIINH--HQMAHFVDARD 236 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C--STTCEEEECCSCCCC--SSGGGGSCTTT
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e--CCCeEEEeCCCcCcH--HHHHHHHhHHH
Confidence 47999999999999999999986 4456677778887654322 2 234789999999753 2222222 223
Q ss_pred HHHH---HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 351 LEDA---MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 351 le~i---~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
+..+ ...|.+++++|............ +..+. ....|+++++||+|.+...
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~---~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIK---GGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE---SSSEEEEEEECTTSCEEEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEcc---CCCceEEEEecCCcccccc
Confidence 4444 56899999998743211110000 11111 1235899999999976543
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.99 E-value=4.5e-10 Score=113.07 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC-CCCCccceee------eeeeeeeecccc---CCcceEEEEeeeeeeecCCCCCcc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD-DSLVPRNQLF------ATLDVTTHEGML---PNRLRILYVDTIGFISNIPTTLLE 345 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~-~~~~~~d~~f------tTld~t~~~~~~---~~~~~v~l~DT~Gfi~~lp~~lie 345 (505)
...|+|+|++|||||||+|+|++. ..+..+ +.+ .|.......... .....+.++||+|+..... ..+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~--~~e 94 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN--CRD 94 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC------------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC--cHH
Confidence 467899999999999999999986 322222 211 111110000111 1135789999999843211 001
Q ss_pred hhhhhH--------HHHHhh-------------ceeEEEeeCCCC-ChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 346 PFKVTL--------EDAMLA-------------DIIIHVVDVSNP-DYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 346 ~f~~tl--------e~i~~A-------------DliL~VvD~s~~-~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
.+.... ..+..+ ++++++.+.+.. ..... .++++.+.- ..|+++|+||+|
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~----~~~l~~l~~----~~~iilV~~K~D 166 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD----VAFMKAIHN----KVNIVPVIAKAD 166 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH----HHHHHHHTT----TSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH----HHHHHHHHh----cCCEEEEEEeCC
Confidence 111111 122222 235565554322 22221 244554431 248999999999
Q ss_pred CCCCCCCC------------CCCCeEEEeccCcccHHHHHHHHHHHHhhh
Q psy50 404 AVPPGERV------------TEEYDLLISATRGTGLAQLKEKVQDMILKA 441 (505)
Q Consensus 404 l~~~~~~~------------~~~~~v~iSA~~g~gi~eL~~~I~~~l~~~ 441 (505)
+....+.. ...+++++||+++ |+++++..+.+.+.+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 97643210 1457899999999 9999999999888643
No 201
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=1.1e-09 Score=115.02 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc--cCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM--LPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~--~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
....|+|+|++|||||||+|+|+|...+..+.+.....+++..... .+....+.++|++|+.. +.... ...++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~--~~~~~---~~~L~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS--TNFPP---DTYLE 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG--SSCCH---HHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc--hHHHH---HHHHH
Confidence 4568999999999999999999997655555444433332211111 11123678999999753 21112 22233
Q ss_pred HH--HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC-------C-----------C-
Q psy50 353 DA--MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE-------R-----------V- 411 (505)
Q Consensus 353 ~i--~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~-------~-----------~- 411 (505)
.+ ...|..++ ++...+ ..+...+...|...+ +|+++|+||+|++..++ . .
T Consensus 143 ~~~L~~~~~~~~-lS~G~~--~kqrv~la~aL~~~~------~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 143 KMKFYEYDFFII-ISATRF--KKNDIDIAKAISMMK------KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HTTGGGCSEEEE-EESSCC--CHHHHHHHHHHHHTT------CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HcCCCccCCeEE-eCCCCc--cHHHHHHHHHHHhcC------CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 22 23344444 565432 233445556665544 49999999999862111 0 0
Q ss_pred ---------CCCCeEEEec--cCcccHHHHHHHHHHHHhh
Q psy50 412 ---------TEEYDLLISA--TRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 412 ---------~~~~~v~iSA--~~g~gi~eL~~~I~~~l~~ 440 (505)
....++++|+ .++.|+++|.+.|.+.+++
T Consensus 214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 0235799999 6777899999999998854
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.94 E-value=3.4e-10 Score=125.21 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=101.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHh---CCCC----CCccceee----------eeeeeeeeccccCCcceEEEEeeeeeeecC
Q psy50 277 PTVAVVGYTNCGKTTLIKALT---DDDS----LVPRNQLF----------ATLDVTTHEGMLPNRLRILYVDTIGFISNI 339 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~---g~~~----~~~~d~~f----------tTld~t~~~~~~~~~~~v~l~DT~Gfi~~l 339 (505)
..|+|+|+.++|||||..+|+ |.-. +..++... .|+........ .++..+.++||||+.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~--- 78 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHM--- 78 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSS---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcH---
Confidence 358999999999999999985 3210 11111111 11111111111 256789999999954
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCC--------
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV-------- 411 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~-------- 411 (505)
+.... +...++-+|..++|+|+..+-. .|.+.+++.+...++ |.++++||+|....+-..
T Consensus 79 --DF~~E---v~raL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~~~l------p~i~~INKmDr~~a~~~~~~~~i~~~ 146 (638)
T 3j25_A 79 --DFLAE---VYRSLSVLDGAILLISAKDGVQ-AQTRILFHALRKMGI------PTIFFINKIDQNGIDLSTVYQDIKEK 146 (638)
T ss_dssp --STHHH---HHHHHTTCSEEECCEESSCTTC-SHHHHHHHHHHHHTC------SCEECCEECCSSSCCSHHHHHHHHHT
T ss_pred --HHHHH---HHHHHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHHcCC------CeEEEEeccccccCCHHHHHHHHHHH
Confidence 22222 3455667999999999998753 457778888888775 789999999986543100
Q ss_pred ----------------------------------------------------------------CCCCeEEEeccCcccH
Q psy50 412 ----------------------------------------------------------------TEEYDLLISATRGTGL 427 (505)
Q Consensus 412 ----------------------------------------------------------------~~~~~v~iSA~~g~gi 427 (505)
...|+++.||+++.|+
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv 226 (638)
T 3j25_A 147 LSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGI 226 (638)
T ss_dssp TCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSH
T ss_pred hCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCc
Confidence 0246888999999999
Q ss_pred HHHHHHHHHHHhh
Q psy50 428 AQLKEKVQDMILK 440 (505)
Q Consensus 428 ~eL~~~I~~~l~~ 440 (505)
+.|++.|.+.++.
T Consensus 227 ~~LLd~i~~~~p~ 239 (638)
T 3j25_A 227 DNLIEVITNKFYS 239 (638)
T ss_dssp HHHHHHHHHSCCC
T ss_pred hhHhhhhhccccC
Confidence 9999999988764
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.86 E-value=9.1e-10 Score=118.28 Aligned_cols=151 Identities=22% Similarity=0.219 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh------CCCCCCcc-c------------------eeeeeeeeeee-------ccc-c
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALT------DDDSLVPR-N------------------QLFATLDVTTH-------EGM-L 321 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~------g~~~~~~~-d------------------~~ftTld~t~~-------~~~-~ 321 (505)
....|+++|.+||||||+++.|+ |.....+. | ..+........ ... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999 54321110 0 00000000000 000 0
Q ss_pred -CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEE
Q psy50 322 -PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVG 399 (505)
Q Consensus 322 -~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~ 399 (505)
..+..++++||||..... ..+.+.+..... +..+|.+++|+|++..... .. ....+.+. .| .++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~~-~~l~~el~~~~~-~i~pd~vllVvDa~~g~~~--~~-~a~~~~~~-------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQE-DSLFEEMLQVAN-AIQPDNIVYVMDASIGQAC--EA-QAKAFKDK-------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTTC-HHHHHHHHHHHH-HHCCSEEEEEEETTCCTTH--HH-HHHHHHHH-------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCcccc-hhHHHHHHHHHh-hhcCceEEEEEeccccccH--HH-HHHHHHhh-------cCceEEEE
Confidence 146789999999975311 122222222222 3468999999999876431 11 22223221 25 38999
Q ss_pred eCCCCCCCCCC------------------------CCCCCeEEEeccCccc-HHHHHHHHHHH
Q psy50 400 NKVDAVPPGER------------------------VTEEYDLLISATRGTG-LAQLKEKVQDM 437 (505)
Q Consensus 400 NKiDl~~~~~~------------------------~~~~~~v~iSA~~g~g-i~eL~~~I~~~ 437 (505)
||+|....... ..+.+.+++||+.|.| +++|++++.+.
T Consensus 248 NK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99998643220 0133456789999999 99999999765
No 204
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=5.4e-10 Score=115.68 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=68.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC------CCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhh-h
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD------SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFK-V 349 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~------~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~-~ 349 (505)
..|+++|.||+|||||+|+|++.. ...+++.+++|.+..... +. ..+.++|||||.. ++.+.+.+. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~--~~~~liDtPG~~~--~~~~~~~l~~~ 234 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD--EESSLYDTPGIIN--HHQMAHYVGKQ 234 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS--SSCEEEECCCBCC--TTSGGGGSCHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec--CCeEEEeCCCcCc--HHHHHHHhhHH
Confidence 579999999999999999999852 234567777777654322 22 2378999999976 222222221 1
Q ss_pred hHHH---HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 350 TLED---AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 350 tle~---i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
.+.. ....+.+++++|........... .+..+. ....|+++++||+|.+..
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~---~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVS---GGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEE---SSSEEEEEEECTTSCEEE
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceE----EEEEec---CCCceEEEEecCcccccc
Confidence 1222 24467888888863221111000 011111 123589999999997643
No 205
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.81 E-value=4.2e-09 Score=119.92 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccc---------------eeeeeeeeeeecccc---------------CCcc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRN---------------QLFATLDVTTHEGML---------------PNRL 325 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d---------------~~ftTld~t~~~~~~---------------~~~~ 325 (505)
..+|+|+|++|+|||||+|+|+......... ....|+........+ ..+.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4589999999999999999998642111110 000111111101111 1257
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAV 405 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~ 405 (505)
.+.+|||||+.. .. ..+...++.+|.+++|+|++++........+ ..+...+ .|+++|+||+|+.
T Consensus 99 ~i~liDTPG~~d-----f~---~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~~------~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVD-----FS---SEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALGER------IKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCS-----SC---HHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHHTT------CEEEEEEECHHHH
T ss_pred eEEEEECcCchh-----hH---HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHcC------CCeEEEEECCCcc
Confidence 899999999642 11 1234556789999999999988665433333 3333322 4899999999986
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.80 E-value=3e-08 Score=111.01 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-------CCCccceeeeeee------eeee----ccccC------CcceEEEEee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDD-------SLVPRNQLFATLD------VTTH----EGMLP------NRLRILYVDT 332 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~-------~~~~~d~~ftTld------~t~~----~~~~~------~~~~v~l~DT 332 (505)
...|+|+|+.++|||||..+|+-.. .+..++....+.+ +|+. ...+. ++..+.++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 3479999999999999999986221 1111111111111 1111 11111 2568999999
Q ss_pred eeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCC
Q psy50 333 IGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPP 407 (505)
Q Consensus 333 ~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~ 407 (505)
||++ +.... +...++-+|.+|+|+|+..+-. .|.+.+++.+.+.++ |.++++||+|....
T Consensus 93 PGHv-----DF~~E---v~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~~~l------p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 93 PGHV-----DFTIE---VERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANKYGV------PRIVYVNKMDRQGA 152 (709)
T ss_dssp CSCT-----TCHHH---HHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHHHTC------CEEEEEECSSSTTC
T ss_pred CCCc-----ccHHH---HHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHHcCC------CeEEEEccccccCc
Confidence 9954 33333 3344566999999999998764 456777777777665 89999999998543
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=1e-08 Score=102.33 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
....+|+++|+||||||||+|+|++.....+++.+++|.+.... .-+..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~----~~~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV----KVGKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCE----EETTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEE----EeCCCEEEEECcCcCC
Confidence 45678999999999999999999998877788888888765421 1244789999999975
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.56 E-value=7.6e-08 Score=95.34 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=65.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee-----eccccCC----cceEEEEeeeeeeecCCCC-Ccch
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT-----HEGMLPN----RLRILYVDTIGFISNIPTT-LLEP 346 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~-----~~~~~~~----~~~v~l~DT~Gfi~~lp~~-lie~ 346 (505)
..++|+|++|||||||+|.|+|...+..+.+.+.+.++.. ....... ...+.++|++||....... ..+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 4799999999999999999999765555544443322110 0011111 1367899999986532211 1111
Q ss_pred hhhh----H-HHH--------------HhhceeEEEeeCC-CCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCC
Q psy50 347 FKVT----L-EDA--------------MLADIIIHVVDVS-NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVP 406 (505)
Q Consensus 347 f~~t----l-e~i--------------~~ADliL~VvD~s-~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~ 406 (505)
+... . ... ..+++.++++|-. ++.... ...+.+.|... .++|+|+||+|.+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~~~-------~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLSKV-------VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHHTT-------SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHHhc-------CcEEEEEeccccCC
Confidence 1111 1 111 1247788888854 444433 33344444432 38999999999876
Q ss_pred CCC
Q psy50 407 PGE 409 (505)
Q Consensus 407 ~~~ 409 (505)
..+
T Consensus 155 ~~e 157 (270)
T 3sop_A 155 LEE 157 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=99.73 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=64.7
Q ss_pred CCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCccce----eeeeeeeeeeccccCCc--ceEEEEeeeeeeecCCCC---
Q psy50 274 QKFPT--VAVVGYTNCGKTTLIKALTDDDSLVPRNQ----LFATLDVTTHEGMLPNR--LRILYVDTIGFISNIPTT--- 342 (505)
Q Consensus 274 ~~~~~--VaLVG~~NaGKSTLlN~L~g~~~~~~~d~----~ftTld~t~~~~~~~~~--~~v~l~DT~Gfi~~lp~~--- 342 (505)
+.+.. ++|+|++|||||||+|.|+|.... ..+. +..+... ........+ ..+.++||+||.......
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~ 115 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFE-GEPATHTQPGVQLQS-NTYDLQESNVRLKLTIVSTVGFGDQINKEDSY 115 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEE-EEEEEEC--CEEEEEEEEEECCCC-CCHHHHS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcccc-CCcCCCCCccceEee-EEEEeecCccccccchhhhhhhhhccccchhh
Confidence 45566 999999999999999999997421 1111 1111110 000001111 267899999986432100
Q ss_pred ------CcchhhhhHHHH----------Hhhc---eeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 343 ------LLEPFKVTLEDA----------MLAD---IIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 343 ------lie~f~~tle~i----------~~AD---liL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
+...+...+.+. ..++ ++++++|..++....+ ..+++.+. . ..|+|+|+||+|
T Consensus 116 ~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~---~~~vI~Vi~KtD 187 (427)
T 2qag_B 116 KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-S---KVNIIPIIAKAD 187 (427)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-S---CSEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-h---CCCEEEEEcchh
Confidence 001111222222 1122 4677888776654432 24445443 1 249999999999
Q ss_pred CCCCCC
Q psy50 404 AVPPGE 409 (505)
Q Consensus 404 l~~~~~ 409 (505)
.+...+
T Consensus 188 ~Lt~~E 193 (427)
T 2qag_B 188 AISKSE 193 (427)
T ss_dssp GSCHHH
T ss_pred ccchHH
Confidence 876543
No 210
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.54 E-value=4e-07 Score=100.13 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC-Cccceeeeeeeeeeec-----------c-----------------------
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSL-VPRNQLFATLDVTTHE-----------G----------------------- 319 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~-~~~d~~ftTld~t~~~-----------~----------------------- 319 (505)
..|.|+|+|++|||||||+++|+|...+ ..+.+.+.+.+++... +
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998644 3444433333211000 0
Q ss_pred ------------------ccCCcceEEEEeeeeeeecCCCCC----cchhhhhHHHH-Hh-hceeEEEeeCCCCChHHHH
Q psy50 320 ------------------MLPNRLRILYVDTIGFISNIPTTL----LEPFKVTLEDA-ML-ADIIIHVVDVSNPDYLQQK 375 (505)
Q Consensus 320 ------------------~~~~~~~v~l~DT~Gfi~~lp~~l----ie~f~~tle~i-~~-ADliL~VvD~s~~~~~~~~ 375 (505)
..+....++++|.||+......++ ...+...+..+ .. ..+++.+++.......
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~--- 200 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT--- 200 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT---
T ss_pred HhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc---
Confidence 001124589999999865322122 22233333332 22 2556666654322211
Q ss_pred HHHHHHHHhcCcccccCccEEEEEeCCCCCCCC
Q psy50 376 QHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408 (505)
Q Consensus 376 ~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~ 408 (505)
.....+++.+.... .++|+|+||+|++...
T Consensus 201 ~~~l~la~~v~~~g---~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 201 TEALSMAQEVDPEG---DRTIGILTKPDLVDKG 230 (608)
T ss_dssp CHHHHHHHHHCSSC---CSEEEEEECGGGSSSS
T ss_pred HHHHHHHHHHhhcC---CceEEEecchhhcCcc
Confidence 12344555543222 3899999999998654
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.51 E-value=1.1e-07 Score=103.81 Aligned_cols=62 Identities=23% Similarity=0.171 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccc------cCCcceEEEEeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM------LPNRLRILYVDTIGFIS 337 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~------~~~~~~v~l~DT~Gfi~ 337 (505)
....+|+|+|+||+|||||+|+|+|..... +...+|.+.|..... ...+..+.++||||+..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 355789999999999999999999986322 444445444332221 13467899999999975
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=4.5e-07 Score=95.69 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee------------------eecc---c------------c-
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT------------------THEG---M------------L- 321 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t------------------~~~~---~------------~- 321 (505)
...|+++|.+||||||+++.|..............+.|+. .... . .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999997421000001111111110 0000 0 0
Q ss_pred CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 322 PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 322 ~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
..+..++++||+|..... ..+...+. .+..+..+|.+++|+|++..... .. ....+.+. + .+..+|+||
T Consensus 180 ~~~~DvVIIDTaGrl~~d-~~lm~el~-~i~~~~~pd~vlLVvDA~~gq~a--~~-~a~~f~~~-~-----~i~gVIlTK 248 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKED-KALIEEMK-QISNVIHPHEVILVIDGTIGQQA--YN-QALAFKEA-T-----PIGSIIVTK 248 (443)
T ss_dssp HTTCSEEEEECCCCSSCC-HHHHHHHH-HHHHHHCCSEEEEEEEGGGGGGH--HH-HHHHHHHS-C-----TTEEEEEEC
T ss_pred hCCCCEEEEECCCcccch-HHHHHHHH-HHHHhhcCceEEEEEeCCCchhH--HH-HHHHHHhh-C-----CCeEEEEEC
Confidence 124789999999965321 12222222 23445568999999998764321 22 22333321 1 257799999
Q ss_pred CCCCC
Q psy50 402 VDAVP 406 (505)
Q Consensus 402 iDl~~ 406 (505)
+|...
T Consensus 249 lD~~~ 253 (443)
T 3dm5_A 249 LDGSA 253 (443)
T ss_dssp CSSCS
T ss_pred CCCcc
Confidence 99754
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=2.1e-07 Score=91.74 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=37.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
.+|+++|.||+|||||+|+|++.....+++.+.+|..... ..-+..+.++||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~----~~~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW----FSLENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE----EECTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE----EEeCCCEEEEECCCccc
Confidence 6899999999999999999999876667777777665422 11234688999999975
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=1.2e-07 Score=100.09 Aligned_cols=152 Identities=23% Similarity=0.182 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee------------------------------eeeeee-e--eccccC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF------------------------------ATLDVT-T--HEGMLP 322 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f------------------------------tTld~t-~--~~~~~~ 322 (505)
...|+++|.+|+||||+++.|.+..........+ ++.++. . ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998632000000010 111110 0 001111
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
.+..++++||||..... ..+...+. .+..+..+|.+++|+|++.... .. ..++.++-.- .....+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~~-~~l~~~l~-~i~~~~~~d~vllVvda~~g~~--~~----~~~~~~~~~~--~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE-KGLLEEMK-QIKEITNPDEIILVIDGTIGQQ--AG----IQAKAFKEAV--GEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSH-HHHHHHHH-HTTSSSCCSEEEEEEEGGGGGG--HH----HHHHHHHTTS--CSCEEEEEECS
T ss_pred hCCCEEEEcCCCCcccc-HHHHHHHH-HHHHHhcCcceeEEeeccccHH--HH----HHHHHHhhcc--cCCeEEEEeCC
Confidence 56789999999965310 01111111 1112235899999999875431 11 1222221100 01388999999
Q ss_pred CCCCCCCC------------------------CCCCCeEEEeccCccc-HHHHHHHHHHH
Q psy50 403 DAVPPGER------------------------VTEEYDLLISATRGTG-LAQLKEKVQDM 437 (505)
Q Consensus 403 Dl~~~~~~------------------------~~~~~~v~iSA~~g~g-i~eL~~~I~~~ 437 (505)
|....... ..+.+..++|++.|.| +..|++.+.+.
T Consensus 249 D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 249 DGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp SSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred CCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 97543210 0122334567777777 66666555443
No 215
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.32 E-value=2.7e-07 Score=92.79 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=69.2
Q ss_pred cceEEEEe-eeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCC-hHHHHHHHHHHHHhcCcccccCccEEEEEeC
Q psy50 324 RLRILYVD-TIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD-YLQQKQHVDETLQHLELEEKILEHVLVVGNK 401 (505)
Q Consensus 324 ~~~v~l~D-T~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~-~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NK 401 (505)
...+...| +.|++....+....-.+ ..+.++|.+++|+|+++|. +......++..+...+ .|+++|+||
T Consensus 49 ~V~~~~~~~~~g~I~~i~er~~~l~r---~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~------~~~ilV~NK 119 (302)
T 2yv5_A 49 YVWGEVVDPNTFAIEEVEERKNLLIR---PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFK------VEPVIVFNK 119 (302)
T ss_dssp EEEEEEEETTEEEEEEECCCSCEEET---TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTT------CEEEEEECC
T ss_pred EEEEEEccCCeEEEEeeCChHHHHhH---HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCC------CCEEEEEEc
Confidence 33444445 78888765432222112 2467799999999999885 4444445554444322 489999999
Q ss_pred CCCCCCCC---CC--------CCCCeEEEeccCcccHHHHHHHHH
Q psy50 402 VDAVPPGE---RV--------TEEYDLLISATRGTGLAQLKEKVQ 435 (505)
Q Consensus 402 iDl~~~~~---~~--------~~~~~v~iSA~~g~gi~eL~~~I~ 435 (505)
+|+.+... .. ...+++++||++|.|+++|++.+.
T Consensus 120 ~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 120 IDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred ccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 99976431 10 135799999999999999998874
No 216
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=8.3e-07 Score=89.04 Aligned_cols=95 Identities=19% Similarity=0.127 Sum_probs=64.9
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCC-hHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD-YLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~-~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
.+.+||| .+. ...+.. ..++.+|++++|+|++++. .......|...++.. ..|+++|+||+|+
T Consensus 64 ~~~iwD~---qer-~~~l~~------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~------~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV---LHR-KNLLTK------PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN------ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE---CCC-SCEETT------TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT------TCEEEEEECCGGG
T ss_pred eEEEEEE---ccc-cceeec------cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEeHHHc
Confidence 7889998 111 111222 2356799999999999886 444444555444432 2599999999999
Q ss_pred CCCCCC---C-----CC--CCeEEEeccCcccHHHHHHHHHH
Q psy50 405 VPPGER---V-----TE--EYDLLISATRGTGLAQLKEKVQD 436 (505)
Q Consensus 405 ~~~~~~---~-----~~--~~~v~iSA~~g~gi~eL~~~I~~ 436 (505)
...... . .. .+++++||++|.|+++++..+..
T Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 128 YDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 754220 0 02 67999999999999999988753
No 217
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=8.6e-07 Score=90.22 Aligned_cols=144 Identities=20% Similarity=0.255 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec------------c--cc------------------
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE------------G--ML------------------ 321 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~------------~--~~------------------ 321 (505)
..+..|+|+|++|||||||++.|++...+..+.+.+.+.|+.... . ..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 456789999999999999999999865444555555555432100 0 00
Q ss_pred --CCcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEE
Q psy50 322 --PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVG 399 (505)
Q Consensus 322 --~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~ 399 (505)
..+..++++||+|..... ..+.+.+.. +..+...|-.++++|+.... .....+...-+.++ ...+++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~-~~l~~eL~~-i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~-------it~iil 275 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETN-RNLMDEMKK-IARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVK-------IDGIIL 275 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTT-TCHHHHHHH-HHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-------CCEEEE
T ss_pred HHhccchhhHHhhccchhHH-HHHHHHHHH-HHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcC-------CCEEEE
Confidence 013457889999965322 233333322 23344578899999976542 11222222222333 457899
Q ss_pred eCCCCCCCCCC------CCCCCeEEEeccCcccHHHH
Q psy50 400 NKVDAVPPGER------VTEEYDLLISATRGTGLAQL 430 (505)
Q Consensus 400 NKiDl~~~~~~------~~~~~~v~iSA~~g~gi~eL 430 (505)
||.|-...... ....|+.+++ +|+++++|
T Consensus 276 TKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 276 TKLDADARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp ECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred eCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 99995322110 0145666666 66665543
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.19 E-value=6.3e-07 Score=89.24 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=68.0
Q ss_pred CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC--------
Q psy50 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-------- 410 (505)
Q Consensus 339 lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-------- 410 (505)
.|.++...++.+++.+..+|++++|+|+.+|..... ..+.+++ + .+|.++|+||+|+.+....
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l---~-----~kp~ilVlNK~DL~~~~~~~~~~~~~~ 76 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL---K-----NKPRIMLLNKADKADAAVTQQWKEHFE 76 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC---S-----SSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH---C-----CCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 344667778888999999999999999998876432 1233333 1 2599999999999864211
Q ss_pred CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 ~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
....+++++||+++.|+++|++.+.+.+.
T Consensus 77 ~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 11357899999999999999999988775
No 219
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.14 E-value=1.8e-06 Score=88.67 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=70.3
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHhhceeEEEeeCCCCCh-------HHHHHHHHHHHHhcC-cccccCc
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAMLADIIIHVVDVSNPDY-------LQQKQHVDETLQHLE-LEEKILE 393 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ADliL~VvD~s~~~~-------~~~~~~v~~~L~~lg-~~~~~~~ 393 (505)
++..+.+|||+|... ++. ....+..++++|+|+|+++.+. ......+..++..+- .....+.
T Consensus 191 ~~~~l~iwDt~GQe~---------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~ 261 (353)
T 1cip_A 191 KDLHFKMFDVGGQRS---------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 261 (353)
T ss_dssp TTEEEEEEEECCSGG---------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred CCeeEEEEeCCCchh---------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence 467899999999422 211 1223457999999999998431 112333344444331 1112246
Q ss_pred cEEEEEeCCCCCCCC-----------------CC-------------------CCCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 394 HVLVVGNKVDAVPPG-----------------ER-------------------VTEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 394 p~IlV~NKiDl~~~~-----------------~~-------------------~~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
|+++|+||+|+.... .. .....++++||+++.|++++++++.+.
T Consensus 262 piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 262 SIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp EEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 999999999984210 00 012357899999999999999999998
Q ss_pred Hhh
Q psy50 438 ILK 440 (505)
Q Consensus 438 l~~ 440 (505)
+..
T Consensus 342 i~~ 344 (353)
T 1cip_A 342 IIK 344 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 220
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.12 E-value=1.3e-07 Score=97.45 Aligned_cols=147 Identities=19% Similarity=0.135 Sum_probs=85.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||+++|+|...+..+.+.+.+.+++..... .. ..+.-..|++.|.+ .+...+ +..+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~---~~-~~~r~~Ig~v~Q~~-~l~~~~-TV~e 124 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES---EL-TKARRQIGMIFQHF-NLLSSR-TVFG 124 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH---HH-HHHHTTEEEECSSC-CCCTTS-CHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH---HH-HHHhCcEEEEeCCC-ccCCCC-CHHH
Confidence 357789999999999999999999999878888888877765321100 00 00012367777765 344333 2333
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...-. .......+..+.+.++|+.+|+.+..+.+ ...++++.+++-.++ |
T Consensus 125 nv~~~~~------~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE--------P 190 (366)
T 3tui_C 125 NVALPLE------LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ--------A 190 (366)
T ss_dssp HHHHHHH------HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES--------T
T ss_pred HHHHHHH------hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC--------C
Confidence 3322200 01112233345677888888875432111 001112222222222 6
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++......+++.|.+...
T Consensus 191 Ts~LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 191 TSALDPATTRSILELLKDINR 211 (366)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHH
Confidence 899999999999998887653
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.12 E-value=9.5e-07 Score=93.08 Aligned_cols=140 Identities=23% Similarity=0.186 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee------------------ee--------------cc-cc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT------------------TH--------------EG-ML 321 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t------------------~~--------------~~-~~ 321 (505)
.+..|+++|++||||||++..|............+.+.|+. .. .. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678999999999999999997321100111111111100 00 00 00
Q ss_pred -CCcceEEEEeeeeeee--cCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHH-hcCcccccCccEEE
Q psy50 322 -PNRLRILYVDTIGFIS--NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQ-HLELEEKILEHVLV 397 (505)
Q Consensus 322 -~~~~~v~l~DT~Gfi~--~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~-~lg~~~~~~~p~Il 397 (505)
..+..++++||||... ..+ .+...+.. +..+..+|.+++|+|++..... . .+.+.+. .++ +..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~-~lm~el~~-i~~~~~pd~vlLVlDa~~gq~a--~-~~a~~f~~~~~-------~~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEET-KLLEEMKE-MYDVLKPDDVILVIDASIGQKA--Y-DLASRFHQASP-------IGSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTT-HHHHHHHH-HHHHHCCSEEEEEEEGGGGGGG--H-HHHHHHHHHCS-------SEEE
T ss_pred HhcCCCEEEEECCCCccccCCH-HHHHHHHH-HHHhhCCcceEEEEeCccchHH--H-HHHHHHhcccC-------CcEE
Confidence 1356899999999643 222 23333322 2233356899999998754221 1 2223333 222 5789
Q ss_pred EEeCCCCCCCCCC------CCCCCeEEEeccCcccHH
Q psy50 398 VGNKVDAVPPGER------VTEEYDLLISATRGTGLA 428 (505)
Q Consensus 398 V~NKiDl~~~~~~------~~~~~~v~iSA~~g~gi~ 428 (505)
|+||+|....... ....|+.+++. |++++
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 9999997532110 01457777775 66654
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.09 E-value=8.6e-07 Score=91.21 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||+++|+|...+..+.+.+.+.++.......+... -..|++.|.+ .+...+ +..++
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~-----r~ig~vfQ~~-~l~p~l-tV~en 100 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE-----RRLGYLVQEG-VLFPHL-TVYRN 100 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG-----SCCEEECTTC-CCCTTS-CHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh-----CCEEEEeCCC-cCCCCC-CHHHH
Confidence 5678999999999999999999999987888888887776532111111000 1367777654 344333 23344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+... .........+..+.+.++|+.+++....+++ ...++++.+++-.++ |+
T Consensus 101 i~~~------l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE--------Pt 166 (359)
T 3fvq_A 101 IAYG------LGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE--------PF 166 (359)
T ss_dssp HHTT------STTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------TT
T ss_pred HHHH------HHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------Cc
Confidence 3322 0111112233345667778877775432111 001111222222222 57
Q ss_pred eccCcccHHHHHHHHHHHHhh
Q psy50 420 SATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~~ 440 (505)
|+++...-.++++.|.+...+
T Consensus 167 s~LD~~~r~~l~~~l~~~~~~ 187 (359)
T 3fvq_A 167 SALDEQLRRQIREDMIAALRA 187 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 999999888888888776643
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.07 E-value=2.8e-07 Score=91.57 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++....... . .+....|++.|.|...... .+..++
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~---~--~~~~~ig~v~Q~~~~~~~~-~tv~e~ 105 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI---M--KLRESIGIVFQDPDNQLFS-ASVYQD 105 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHH---H--HHHHSEEEECSSGGGTCCS-SBHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccH---H--HHhCcEEEEEcCccccccc-CcHHHH
Confidence 467899999999999999999999987777788877776652110000 0 0113467777665321111 123333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...-.. ......+..+.+.++|+.+++....+.+ ...++++.+++-.++ |+
T Consensus 106 l~~~~~~------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE--------Pt 171 (275)
T 3gfo_A 106 VSFGAVN------MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE--------PT 171 (275)
T ss_dssp HHHHHHT------SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC--------TT
T ss_pred HHHHHHH------cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC--------cc
Confidence 3221100 1112233345677788888775432221 011122222222233 68
Q ss_pred eccCcccHHHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l 438 (505)
|+++..+...+++.|.+..
T Consensus 172 s~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 172 AGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 9999999999999988865
No 224
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.02 E-value=1.1e-06 Score=91.03 Aligned_cols=141 Identities=13% Similarity=0.186 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... +.. -..|++.|.+ .+...+ +..++
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~---~~~------r~ig~VfQ~~-~l~p~l-tV~en 95 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP---PAE------RGVGMVFQSY-ALYPHL-SVAEN 95 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGG------SCEEEECTTC-CCCTTS-CHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC---HHH------CCEEEEecCC-cCCCCC-CHHHH
Confidence 567899999999999999999999998788888888776653211 111 1367777765 344333 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- ........+..+.+.++++.+++....+++ ...++++.+++-.++ |+
T Consensus 96 i~~~~------~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE--------Pt 161 (381)
T 3rlf_A 96 MSFGL------KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE--------PL 161 (381)
T ss_dssp HTHHH------HHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES--------TT
T ss_pred HHHHH------HHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC--------CC
Confidence 32210 001112233345677788888775422111 001112222222222 68
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++...-.++++.|.+...
T Consensus 162 s~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999988888888887654
No 225
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.97 E-value=3.3e-06 Score=85.82 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=70.3
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHhhceeEEEeeCC-------CCChHHHHHHHHHHHHhc-CcccccCc
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAMLADIIIHVVDVS-------NPDYLQQKQHVDETLQHL-ELEEKILE 393 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ADliL~VvD~s-------~~~~~~~~~~v~~~L~~l-g~~~~~~~ 393 (505)
++..+.+|||+|.. .+++ ....++.++.+++|+|++ +.........+..++..+ ..+...+.
T Consensus 165 ~~v~l~iwDtgGQe---------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 165 QSVIFRMVDVGGQR---------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp TTEEEEEEEECCSH---------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred eceeeEEEEcCCch---------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 46789999999942 2322 223356799999999776 222222233344444433 11122346
Q ss_pred cEEEEEeCCCCCCCC----------------CCC--------------------CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 394 HVLVVGNKVDAVPPG----------------ERV--------------------TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 394 p~IlV~NKiDl~~~~----------------~~~--------------------~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
|+++++||+|+.... ... ....++++||+++.|++.+++.+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999985311 000 01246889999999999999999998
Q ss_pred Hhhh
Q psy50 438 ILKA 441 (505)
Q Consensus 438 l~~~ 441 (505)
+.+.
T Consensus 316 Il~~ 319 (327)
T 3ohm_A 316 ILQL 319 (327)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8653
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.97 E-value=5.7e-06 Score=85.41 Aligned_cols=86 Identities=21% Similarity=0.267 Sum_probs=61.8
Q ss_pred cchhhhhHHHH-HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------------
Q psy50 344 LEPFKVTLEDA-MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------------ 410 (505)
Q Consensus 344 ie~f~~tle~i-~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------------ 410 (505)
.+.|+++++++ ..++++++|+|++++...- ...+.+. ++ .+|+++|+||+|+.+....
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-~~~l~~~---l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSF-IPGLPRF---AA-----DNPILLVGNKADLLPRSVKYPKLLRWMRRMA 128 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-CSSHHHH---CT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCCch-hhHHHHH---hC-----CCCEEEEEEChhcCCCccCHHHHHHHHHHHH
Confidence 46788888887 6778999999999876321 1111222 21 3599999999999865321
Q ss_pred -CCC---CCeEEEeccCcccHHHHHHHHHHHH
Q psy50 411 -VTE---EYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 411 -~~~---~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
... .+++++||++|.|+++|++.|.++.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 001 3689999999999999999998765
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.96 E-value=5.7e-06 Score=85.39 Aligned_cols=86 Identities=26% Similarity=0.368 Sum_probs=61.7
Q ss_pred cchhhhhHHHHHh-hceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC-----------C
Q psy50 344 LEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER-----------V 411 (505)
Q Consensus 344 ie~f~~tle~i~~-ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~-----------~ 411 (505)
.+.|+++++++.. +|++++|+|++++. ..+...+.++- . ++|+++|+||+|+.+.... .
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~---~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-G---NNKVLLVGNKADLIPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-S---SSCEEEEEECGGGSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-C---CCcEEEEEEChhcCCcccCHHHHHHHHHHHH
Confidence 4678888877765 45999999998753 23333344331 1 3599999999999765421 0
Q ss_pred --CC---CCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 --TE---EYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 --~~---~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
.. .+++++||++|.|+++|++.|.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 02 2689999999999999999998765
No 228
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.95 E-value=7.6e-06 Score=84.32 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=66.3
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCC----------CChHHHHHHHHHHHHhc-Cccccc
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSN----------PDYLQQKQHVDETLQHL-ELEEKI 391 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~----------~~~~~~~~~v~~~L~~l-g~~~~~ 391 (505)
++..+.+|||+|..... .+. ...+..++++|+|+|+++ ..... .+..++..+ ......
T Consensus 199 ~~~~l~i~Dt~Gq~~~r--~~w------~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~---es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSER--KRW------FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLT---ESLNIFETIVNNRVFS 267 (362)
T ss_dssp TTEEEEEEEECC---------C------TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHH---HHHHHHHHHHTCGGGT
T ss_pred CCeEEEEEeccchhhhh--hhH------HHHhCCCCEEEEEEECccccccccccccccHHH---HHHHHHHHHhcchhhC
Confidence 46789999999953211 111 112346999999999998 33332 223333322 111122
Q ss_pred CccEEEEEeCCCCCCC------------------CCC-------------------CCCCCeEEEeccCcccHHHHHHHH
Q psy50 392 LEHVLVVGNKVDAVPP------------------GER-------------------VTEEYDLLISATRGTGLAQLKEKV 434 (505)
Q Consensus 392 ~~p~IlV~NKiDl~~~------------------~~~-------------------~~~~~~v~iSA~~g~gi~eL~~~I 434 (505)
+.|+|+++||+|+... ... .....++++||+++.|++++++.+
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 4699999999998521 000 002346889999999999999999
Q ss_pred HHHHhh
Q psy50 435 QDMILK 440 (505)
Q Consensus 435 ~~~l~~ 440 (505)
.+.+..
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 229
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.94 E-value=5e-06 Score=85.41 Aligned_cols=107 Identities=9% Similarity=-0.082 Sum_probs=65.7
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCC----------CCChHHHHHHHHHHHHhcC-ccccc
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVS----------NPDYLQQKQHVDETLQHLE-LEEKI 391 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s----------~~~~~~~~~~v~~~L~~lg-~~~~~ 391 (505)
....+.+|||+|... .... ....++.++++++|+|++ +..... .+..++..+- .....
T Consensus 181 ~~v~l~iwDtaGQe~------~r~~--~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~---~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRN------ERRK--WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMM---ETKELFDWVLKQPCFE 249 (354)
T ss_dssp ---EEEEEEECCSTT------GGGG--TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH---HHHHHHHHHHTCGGGS
T ss_pred cceeeEEEECCCchh------hhHH--HHHHhCCCCEEEEEEECcccccccccccchhHHH---HHHHHHHHHHhccccC
Confidence 357899999999321 1111 122356799999999998 444433 3333333321 11122
Q ss_pred CccEEEEEeCCCCCCCCC-----------------------C--------C---------------C-CCCeEEEeccCc
Q psy50 392 LEHVLVVGNKVDAVPPGE-----------------------R--------V---------------T-EEYDLLISATRG 424 (505)
Q Consensus 392 ~~p~IlV~NKiDl~~~~~-----------------------~--------~---------------~-~~~~v~iSA~~g 424 (505)
..|+++|+||+|+..... . . . ...++++||+++
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 469999999999732100 0 0 0 012579999999
Q ss_pred ccHHHHHHHHHHHHhh
Q psy50 425 TGLAQLKEKVQDMILK 440 (505)
Q Consensus 425 ~gi~eL~~~I~~~l~~ 440 (505)
.|++++++.+.+.+.+
T Consensus 330 ~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 330 KLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999887754
No 230
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.89 E-value=1.1e-06 Score=86.37 Aligned_cols=142 Identities=11% Similarity=0.040 Sum_probs=78.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++.... .. +....|++.+.+ .+...+ +..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~------~~--~~~~i~~v~q~~-~l~~~l-tv~e 107 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP------HE--VRKLISYLPEEA-GAYRNM-QGIE 107 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH------HH--HHTTEEEECTTC-CCCTTS-BHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH------HH--HhhcEEEEcCCC-CCCCCC-cHHH
Confidence 3577899999999999999999999997777777776665432100 00 112356666554 233222 2223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...... .. .......+.+.++++.+++.+..+++ ...++.+.+++-.++ |
T Consensus 108 nl~~~~~~---~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE--------P 173 (256)
T 1vpl_A 108 YLRFVAGF---YA---SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE--------P 173 (256)
T ss_dssp HHHHHHHH---HC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES--------T
T ss_pred HHHHHHHH---cC---CChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------C
Confidence 32221000 01 11112234456677777764422211 001112222222223 6
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 174 ts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHH
Confidence 89999999999999998764
No 231
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.87 E-value=9e-06 Score=84.82 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=68.8
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhh-hHHHHHhhceeEEEeeCCC----------CChHHHHHHHHHHHHhcCccccc
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKV-TLEDAMLADIIIHVVDVSN----------PDYLQQKQHVDETLQHLELEEKI 391 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~-tle~i~~ADliL~VvD~s~----------~~~~~~~~~v~~~L~~lg~~~~~ 391 (505)
++..+.+|||+|.. .+++ ....++.++.+++|+|+++ ..+......+.+.+.... ...
T Consensus 215 ~~v~l~iwDtaGQe---------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~--~~~ 283 (402)
T 1azs_C 215 DKVNFHMFDVGGQR---------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR--WLR 283 (402)
T ss_dssp TTEEEEEEEECCSG---------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT--TCS
T ss_pred CCccceecccchhh---------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc--cCC
Confidence 35789999999942 2221 1233567999999999998 554433333333222211 122
Q ss_pred CccEEEEEeCCCCCCCC-----------------------------C---CC---------------------CCCCeEE
Q psy50 392 LEHVLVVGNKVDAVPPG-----------------------------E---RV---------------------TEEYDLL 418 (505)
Q Consensus 392 ~~p~IlV~NKiDl~~~~-----------------------------~---~~---------------------~~~~~v~ 418 (505)
..|+++|+||+|+.... . .. ....+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 45999999999973210 0 00 0113568
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+||+++.||++++..+.+.+..
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 232
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.86 E-value=1.2e-05 Score=77.99 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
.. ..++|+|++|||||||++.|+|...+..+.+.+.+.++.. .... ....|++.+.+ .+...+ +..+.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~-----~~~i~~v~q~~-~l~~~l-tv~en 90 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP----LPPE-----RRGIGFVPQDY-ALFPHL-SVYRN 90 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT----SCTT-----TSCCBCCCSSC-CCCTTS-CHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc----Cchh-----hCcEEEEcCCC-ccCCCC-cHHHH
Confidence 45 7899999999999999999999977777777776655421 0100 12367776654 333322 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- ... . .....+.+.++++.+++.+..+++ ...++++.+++-.++ |+
T Consensus 91 l~~~~------~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE--------Pt 154 (240)
T 2onk_A 91 IAYGL------RNV-E-RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE--------PL 154 (240)
T ss_dssp HHTTC------TTS-C-HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES--------TT
T ss_pred HHHHH------HHc-C-CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------Cc
Confidence 32210 000 1 111234566778887764422211 112223333333333 68
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++..+...+.+.|.+...
T Consensus 155 s~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.85 E-value=3.1e-06 Score=85.28 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeeccccCCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHEGMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~~~~~~~~~v~l~DT~Gfi~ 337 (505)
+..++|+|+||||||||+|+|++...+.++++.+ .+.+++......... ...++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 5699999999999999999999987666676665 333333221111111 246889999864
No 234
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.84 E-value=3.3e-06 Score=86.71 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=82.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeec-cccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE-GMLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~-~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... ...+... -..|++.|.+ .+...+ +..
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~-----r~ig~v~Q~~-~l~~~l-tv~ 100 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED-----RKIGMVFQTW-ALYPNL-TAF 100 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG-----SCEEEEETTS-CCCTTS-CHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh-----CCEEEEeCCC-ccCCCC-CHH
Confidence 3567899999999999999999999998777788877776653210 0011000 1356666654 333332 233
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v 417 (505)
+.+...- ........+..+.+.++++.+++.+..+++ ...++.+.+++-.++
T Consensus 101 eni~~~~------~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE-------- 166 (353)
T 1oxx_K 101 ENIAFPL------TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE-------- 166 (353)
T ss_dssp HHHHGGG------TTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------
T ss_pred HHHHHHH------HHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC--------
Confidence 4433210 111111222345667788888775432111 001112222222222
Q ss_pred EEeccCcccHHHHHHHHHHHHh
Q psy50 418 LISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++...-.++.+.|.+...
T Consensus 167 P~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 167 PFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp TTTTSCGGGHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999987654
No 235
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.83 E-value=3.6e-06 Score=83.06 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 46789999999999999999999999877788887777654
No 236
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.81 E-value=3.1e-06 Score=87.11 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... +.. ...|++.|.+ .+...+ +..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~------r~ig~v~Q~~-~l~~~l-tv~en 95 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP---PKY------REVGMVFQNY-ALYPHM-TVFEN 95 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGG------TTEEEECSSC-CCCTTS-CHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC---hhh------CcEEEEecCc-ccCCCC-CHHHH
Confidence 567899999999999999999999998777788877766543211 111 2356766654 333332 23344
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- ........+..+.+.++++.+++.+..+++ ...++.+.+++-.++ |+
T Consensus 96 i~~~~------~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE--------P~ 161 (359)
T 2yyz_A 96 IAFPL------RARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE--------PL 161 (359)
T ss_dssp HHGGG------SSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------TT
T ss_pred HHHHH------HhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC--------Cc
Confidence 33220 111111111134566777777764422111 001112222222222 68
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++...-.++.+.|.+...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999988888888877653
No 237
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.81 E-value=4e-06 Score=86.67 Aligned_cols=142 Identities=14% Similarity=0.173 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... +.. ...|++.|.+ .+...+ +..+
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~------r~ig~v~Q~~-~l~~~l-tv~e 102 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP---PKD------RNISMVFQSY-AVWPHM-TVYE 102 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGG------GTEEEEEC-------CC-CHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC---hhh------CcEEEEecCc-ccCCCC-CHHH
Confidence 3567899999999999999999999998777788877766543211 111 1356665543 233222 2334
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE--------------EEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV--------------LVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~--------------IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+... +.. ......+..+.+.++++.+++....+++. ..++.+.+++-.++ |
T Consensus 103 ni~~~---~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE--------P 168 (372)
T 1v43_A 103 NIAFP---LKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE--------P 168 (372)
T ss_dssp HHHTT---CC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES--------T
T ss_pred HHHHH---HHh---cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--------C
Confidence 43322 101 11112223456777888888754321110 00011111111112 5
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++...-.++++.|.++..
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHH
Confidence 899999988888888877653
No 238
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.81 E-value=3.5e-06 Score=86.84 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... +.. ...|++.|.+ .+...+ +..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~------r~ig~v~Q~~-~l~~~l-tv~en 95 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP---PKD------RNVGLVFQNW-ALYPHM-TVYKN 95 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGG------TTEEEECTTC-CCCTTS-CHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC---HhH------CcEEEEecCc-ccCCCC-CHHHH
Confidence 567899999999999999999999998777788877766543211 111 1356666654 333322 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- ........+..+.+.++++.+++.+..+++ ...++.+.+++-.++ |+
T Consensus 96 i~~~~------~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE--------P~ 161 (362)
T 2it1_A 96 IAFPL------ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE--------PL 161 (362)
T ss_dssp HHHHH------HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------GG
T ss_pred HHHHH------HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC--------cc
Confidence 32210 000111222244567778887764422111 001111222222222 68
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++...-.++.+.|.+...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999998898888877653
No 239
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.81 E-value=3.2e-06 Score=86.82 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+++... +.. -..|++.|.+ .+...+ +..+.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~------r~ig~v~Q~~-~l~~~l-tv~en 107 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP---PQK------RNVGLVFQNY-ALFQHM-TVYDN 107 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGG------SSEEEECGGG-CCCTTS-CHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---hhh------CcEEEEecCc-ccCCCC-CHHHH
Confidence 467899999999999999999999998777788877766543110 111 1246665543 233322 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+...- ........+..+.+.++++.+++....+++ ...++++.+++-.++ |+
T Consensus 108 i~~~l------~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE--------P~ 173 (355)
T 1z47_A 108 VSFGL------REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE--------PF 173 (355)
T ss_dssp HHHHH------HHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------TT
T ss_pred HHHHH------HHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--------Cc
Confidence 22210 001111222345567778888775422111 001112222222233 68
Q ss_pred eccCcccHHHHHHHHHHHHh
Q psy50 420 SATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l~ 439 (505)
|+++...-.++.+.|.+...
T Consensus 174 s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 174 AAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp CCSSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999998888888877653
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.80 E-value=1.5e-05 Score=80.03 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeeccccCCcceEEEEeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
+..++++|++|||||||+|+|+ ...+.++.+.+ .+.+++..........--.++||||+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 4689999999999999999999 76677777776 444443322111111123678999975
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.79 E-value=5.6e-05 Score=75.97 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee-------------c-ccc-------------------
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH-------------E-GML------------------- 321 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~-------------~-~~~------------------- 321 (505)
.+..|+|+|++|||||||++.|.+...+..+.+.+.+.|+... . ...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876434344444444333110 0 000
Q ss_pred -CCcceEEEEeeeeeeecCCCCCcchhhhhHHHH-----HhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccE
Q psy50 322 -PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA-----MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395 (505)
Q Consensus 322 -~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i-----~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~ 395 (505)
..+..+.++||+|..... ..+...+..-...+ ...+.+++++|+..... ....+....+..+ ..
T Consensus 181 ~~~~~d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~-------~t 250 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG-------LT 250 (304)
T ss_dssp HHHTCSEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC-------CS
T ss_pred HhCCCCEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC-------Cc
Confidence 013456789999964311 11222221111111 23577888999765432 1222222222333 35
Q ss_pred EEEEeCCCCC
Q psy50 396 LVVGNKVDAV 405 (505)
Q Consensus 396 IlV~NKiDl~ 405 (505)
++++||.|-.
T Consensus 251 ~iivTh~d~~ 260 (304)
T 1rj9_A 251 GVIVTKLDGT 260 (304)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCccc
Confidence 7899999853
No 242
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.76 E-value=4.9e-06 Score=86.03 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeecc--ccCCcceEEEEeeeeeeecCCCCCcchhhhhH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEG--MLPNRLRILYVDTIGFISNIPTTLLEPFKVTL 351 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~--~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tl 351 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.+++.... ..+... -..|++.|.+ .+...+ +..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~-----r~ig~v~Q~~-~l~~~l-tv~ 99 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD-----RDIAMVFQSY-ALYPHM-TVY 99 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG-----SSEEEECSCC-CCCTTS-CHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH-----CCEEEEeCCC-ccCCCC-CHH
Confidence 4678999999999999999999999987778888777766532000 011000 1356666654 333322 223
Q ss_pred HHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeE
Q psy50 352 EDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 352 e~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v 417 (505)
+.+...- ........+..+.+.++++.+++.+..+++ ...++.+.+++-.++
T Consensus 100 eni~~~~------~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-------- 165 (372)
T 1g29_1 100 DNIAFPL------KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE-------- 165 (372)
T ss_dssp HHHHHHH------HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC--------
T ss_pred HHHHHHH------HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC--------
Confidence 3332210 001111222234566777777764422111 001112222222222
Q ss_pred EEeccCcccHHHHHHHHHHHHh
Q psy50 418 LISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++...-.++.+.|.++..
T Consensus 166 P~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 166 PLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHH
Confidence 5799999988888888877653
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.76 E-value=1.5e-05 Score=79.83 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=35.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee---eeeeeeeeccccCCcceEEEEeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF---ATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f---tTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
+..++++|++|||||||+|+|.+...+..+.+.+ .+.+++.......-.....+.||||+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 4689999999999999999999988777777776 444443221111001123577888864
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.75 E-value=0.00013 Score=72.98 Aligned_cols=120 Identities=21% Similarity=0.166 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeee--------------------e------------cc-ccC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT--------------------H------------EG-MLP 322 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~--------------------~------------~~-~~~ 322 (505)
+..++++|.+|+||||+++.|.+......+.......|+.. . .. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 55789999999999999999984321111111111111100 0 00 001
Q ss_pred -CcceEEEEeeeeeeec-CCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEe
Q psy50 323 -NRLRILYVDTIGFISN-IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGN 400 (505)
Q Consensus 323 -~~~~v~l~DT~Gfi~~-lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~N 400 (505)
.+..++++||||.... ....+...+. .+..+..+|.+++|+|+... ......+ +.+.. .+ ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~-~i~~~~~~d~vllVvda~~g--~~~~~~~-~~~~~-~~-----~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMK-NIYEAIKPDEVTLVIDASIG--QKAYDLA-SKFNQ-AS-----KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHH-HHHHHHCCSEEEEEEEGGGG--GGHHHHH-HHHHH-TC-----TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHH-HHHHHhcCCEEEEEeeCCch--HHHHHHH-HHHHh-hC-----CCCEEEEe
Confidence 4567999999996430 0001111111 12345578999999998643 1222222 22221 11 12778999
Q ss_pred CCCCC
Q psy50 401 KVDAV 405 (505)
Q Consensus 401 KiDl~ 405 (505)
|+|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99964
No 245
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.75 E-value=1.9e-05 Score=77.23 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+. +....|++.+.+ .+...+ +..+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------------------~~~~i~~v~q~~-~~~~~~-tv~en 86 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------------VYQSIGFVPQFF-SSPFAY-SVLDI 86 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------------------ECSCEEEECSCC-CCSSCC-BHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------------------EeccEEEEcCCC-ccCCCC-CHHHH
Confidence 46779999999999999999999998755444442 112356665544 222222 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~i 419 (505)
+....... ............+.+.++++.+++.+..+++ ...++++.+++-.++ |+
T Consensus 87 l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE--------Pt 156 (253)
T 2nq2_C 87 VLMGRSTH--INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE--------PT 156 (253)
T ss_dssp HHGGGGGG--SCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS--------SS
T ss_pred HHHhhhhh--cccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------Cc
Confidence 32221000 0000000112234566777777765432221 111222333333333 68
Q ss_pred eccCcccHHHHHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 420 SA~~g~gi~eL~~~I~~~l 438 (505)
|+++..+...+.+.|.+..
T Consensus 157 s~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 246
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.74 E-value=2e-05 Score=84.00 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f 309 (505)
..+..++|+|++|||||||++.|++......+.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 456689999999999999999998754333344444
No 247
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.74 E-value=4e-06 Score=82.52 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=61.3
Q ss_pred CCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCC------C--
Q psy50 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGER------V-- 411 (505)
Q Consensus 340 p~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~------~-- 411 (505)
|.++..+++.+++.+..+|++++|+|+.+|...... .+. ++ .+|.++|+||+|+.+.... .
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll---------~k~~iivlNK~DL~~~~~~~~~~~~~~~ 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS---------RKETIILLNKVDIADEKTTKKWVEFFKK 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT---------TSEEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc---------CCCcEEEEECccCCCHHHHHHHHHHHHH
Confidence 556677788889999999999999999988654311 111 11 3599999999999864321 0
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDM 437 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~ 437 (505)
...++ ++||+++.|+++|++.|.+.
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 13467 99999999999999887654
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.67 E-value=6.4e-05 Score=75.60 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+++|++||||||++..|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4457899999999999999999865
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.65 E-value=8.2e-05 Score=74.40 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc-ceeeeeeeeeeec----------------------------cccCCcc
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPR-NQLFATLDVTTHE----------------------------GMLPNRL 325 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~-d~~ftTld~t~~~----------------------------~~~~~~~ 325 (505)
.+..|+++|++||||||++..|.+......+ ...+.+.|+.... .....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4678999999999999999999764311111 2333333321000 0001356
Q ss_pred eEEEEeeeeeeecCCCCCcchhhhhHHHHH---hhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAM---LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 326 ~v~l~DT~Gfi~~lp~~lie~f~~tle~i~---~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
.++++||+|.... . ...+. .+..+. ..|.+++|+|++... . .+.++.+.+..- ...-+|+||.
T Consensus 184 dlvIiDT~G~~~~---~-~~~~~-el~~~l~~~~~~~~~lVl~at~~~--~---~~~~~~~~~~~l----~~~giVltk~ 249 (296)
T 2px0_A 184 DHVFVDTAGRNFK---D-PQYID-ELKETIPFESSIQSFLVLSATAKY--E---DMKHIVKRFSSV----PVNQYIFTKI 249 (296)
T ss_dssp SEEEEECCCCCTT---S-HHHHH-HHHHHSCCCTTEEEEEEEETTBCH--H---HHHHHTTTTSSS----CCCEEEEECT
T ss_pred CEEEEeCCCCChh---h-HHHHH-HHHHHHhhcCCCeEEEEEECCCCH--H---HHHHHHHHHhcC----CCCEEEEeCC
Confidence 8999999996421 1 11111 112222 256778999987542 1 223333333211 1345677999
Q ss_pred CCC
Q psy50 403 DAV 405 (505)
Q Consensus 403 Dl~ 405 (505)
|..
T Consensus 250 D~~ 252 (296)
T 2px0_A 250 DET 252 (296)
T ss_dssp TTC
T ss_pred Ccc
Confidence 953
No 250
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.62 E-value=2.9e-05 Score=79.24 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=68.9
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhh-HHHHHhhceeEEEeeCC----------CCChHHHHHHHHHHHHhcC-cccc
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVT-LEDAMLADIIIHVVDVS----------NPDYLQQKQHVDETLQHLE-LEEK 390 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~t-le~i~~ADliL~VvD~s----------~~~~~~~~~~v~~~L~~lg-~~~~ 390 (505)
++..+.+|||+|. +.+++. ...++.++.+|+|+|++ +.... ..+..++..+- -...
T Consensus 159 ~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~---~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 159 KDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRL---TESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHH---HHHHHHHHHHHHCGGG
T ss_pred eeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchH---HHHHHHHHHHhhhhcc
Confidence 4688999999993 334332 23456799999999998 33332 22333333221 1112
Q ss_pred cCccEEEEEeCCCCCCCC----C-------------C----------C-------------------------CCCCeEE
Q psy50 391 ILEHVLVVGNKVDAVPPG----E-------------R----------V-------------------------TEEYDLL 418 (505)
Q Consensus 391 ~~~p~IlV~NKiDl~~~~----~-------------~----------~-------------------------~~~~~v~ 418 (505)
.+.|+++++||+|+.... . . . ....+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 235999999999985310 0 0 0 0124688
Q ss_pred EeccCcccHHHHHHHHHHHHhh
Q psy50 419 ISATRGTGLAQLKEKVQDMILK 440 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~~ 440 (505)
+||++..|++.+++.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 251
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.62 E-value=6.7e-05 Score=71.40 Aligned_cols=92 Identities=11% Similarity=-0.081 Sum_probs=58.9
Q ss_pred hhhhhH-HHHHhhceeEEEeeCCCCChHHHHHHH---HHHHHhcCcccccCccEEEEEeCC-CCCCCCCC----------
Q psy50 346 PFKVTL-EDAMLADIIIHVVDVSNPDYLQQKQHV---DETLQHLELEEKILEHVLVVGNKV-DAVPPGER---------- 410 (505)
Q Consensus 346 ~f~~tl-e~i~~ADliL~VvD~s~~~~~~~~~~v---~~~L~~lg~~~~~~~p~IlV~NKi-Dl~~~~~~---------- 410 (505)
.++..+ .++..+|.+|||+|+++....+..+.+ ..+|.+-. .....|+++..||. |+......
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~--~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~ 191 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF--GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 191 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTS--SCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchh--hhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCc
Confidence 344444 346789999999999987543333333 22232210 01235999999995 66443221
Q ss_pred --CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 --VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 --~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.....+.++||++|+|+.+-++||.+.+.
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 01345899999999999999999988763
No 252
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.61 E-value=2.9e-05 Score=79.72 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=36.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC-CCccceeee-eee--eeeec--cccCCcceEEEEeeeeeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDS-LVPRNQLFA-TLD--VTTHE--GMLPNRLRILYVDTIGFIS 337 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~-~~~~d~~ft-Tld--~t~~~--~~~~~~~~v~l~DT~Gfi~ 337 (505)
+..++|+|++|||||||+|+|++... +.++.+... +.. ++.+. ..++.+ ..++||+|+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~--~~l~dtpgv~e 280 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHG--GDVIDSPGVRE 280 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTS--CEEEECHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCC--CEecCcccHHH
Confidence 46899999999999999999999876 666665443 111 11111 222222 24688988754
No 253
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.59 E-value=5.6e-05 Score=79.82 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|+|.+|+|||||||.|.|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 5678999999999999999999863
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.53 E-value=5.4e-05 Score=76.63 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..|+++|++|+||||++..|.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998764
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.42 E-value=9.7e-05 Score=71.29 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=81.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
-..+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... ....-......|++.|.| .+...+ +..+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~~~~i~~v~Q~~-~l~~~~-tv~e 102 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD---DELTKIRRDKIGFVFQQF-NLIPLL-TALE 102 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH---HHHHHHHHHHEEEECTTC-CCCTTS-CHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCH---HHHHHHhhccEEEEecCC-ccCCCC-cHHH
Confidence 35778999999999999999999999987777777776655421100 000000011366776655 333332 2233
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCccccc-Ccc--------------EEEEEeCCCCCCCCCCCCCCCeE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI-LEH--------------VLVVGNKVDAVPPGERVTEEYDL 417 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~-~~p--------------~IlV~NKiDl~~~~~~~~~~~~v 417 (505)
.+..+-.. . -.......+..+.+.+.+..+++.+.. +.+ ...++++.+++-.++
T Consensus 103 nl~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE-------- 171 (235)
T 3tif_A 103 NVELPLIF-K--YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ-------- 171 (235)
T ss_dssp HHHHHHHT-C--SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------
T ss_pred HHHHHHHh-h--hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------
Confidence 33221000 0 000111223345566777777764321 111 011112222222233
Q ss_pred EEeccCcccHHHHHHHHHHHHh
Q psy50 418 LISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 418 ~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
|+|+++..+...+++.|.+...
T Consensus 172 Pts~LD~~~~~~i~~~l~~l~~ 193 (235)
T 3tif_A 172 PTWALDSKTGEKIMQLLKKLNE 193 (235)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999988653
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.34 E-value=0.00011 Score=70.28 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEE-eeeeeeecCCCCCcchhhhhHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYV-DTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~-DT~Gfi~~lp~~lie~f~~tle 352 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++..... .... .+. ...|++.+.+ .+...+ +..+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~-~~~~~~i~~v~q~~-~l~~~~-tv~e 101 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE---KELS-LLRNRKLGFVFQFH-YLIPEL-TALE 101 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCH---HHHH-HHHHHHEEEECSSC-CCCTTS-CHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCH---HHHH-HHHhCcEEEEecCc-ccCCCC-CHHH
Confidence 4678999999999999999999999877777777776655421100 0000 000 1256665544 233222 2223
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...-. ..........+.+.++++.+++.+..+.+ ...++++.+++-.+| |
T Consensus 102 ~l~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE--------P 167 (224)
T 2pcj_A 102 NVIVPML------KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE--------P 167 (224)
T ss_dssp HHHHHHH------HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEES--------T
T ss_pred HHHhHHH------HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC--------C
Confidence 3221100 00111122234566778877764321111 001111222222222 6
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 168 t~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 168 TGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999988764
No 257
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.31 E-value=0.00015 Score=71.10 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=80.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee---cc---ccCCcceEEEEeeeeeeecCCCCCcch
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH---EG---MLPNRLRILYVDTIGFISNIPTTLLEP 346 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~---~~---~~~~~~~v~l~DT~Gfi~~lp~~lie~ 346 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++... .. .........+....|++.+.+ .+...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~-~l~~~ 107 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF-NLWSH 107 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSC-CCCTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCc-ccCCC
Confidence 357789999999999999999999999777777777766554210 00 000000000012356666554 33332
Q ss_pred hhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccc-cCcc--------------EEEEEeCCCCCCCCCCC
Q psy50 347 FKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK-ILEH--------------VLVVGNKVDAVPPGERV 411 (505)
Q Consensus 347 f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~-~~~p--------------~IlV~NKiDl~~~~~~~ 411 (505)
+ +..+.+...-. ...........+.+.++++.+++.+. .+++ ...++++.+++-.++
T Consensus 108 l-tv~e~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE-- 179 (262)
T 1b0u_A 108 M-TVLENVMEAPI-----QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE-- 179 (262)
T ss_dssp S-CHHHHHHHHHH-----HTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES--
T ss_pred C-cHHHHHHhhHH-----HhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC--
Confidence 2 22333322100 00011112223456677887776432 1111 011122222222233
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
|+|+++..+...+.+.|.+..
T Consensus 180 ------Pts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 180 ------PTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp ------TTTTSCHHHHHHHHHHHHHHH
T ss_pred ------CCccCCHHHHHHHHHHHHHHH
Confidence 689999999999999988764
No 258
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.28 E-value=0.0005 Score=72.36 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHh
Q psy50 276 FPTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~ 297 (505)
...|+++|.+|+||||+...|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999987
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.27 E-value=0.00017 Score=69.81 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 56779999999999999999999999877788887776654
No 260
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.26 E-value=0.00016 Score=70.72 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++.... ... .+....|++.+.+ .+...+ +..+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----~~~--~~~~~i~~v~q~~-~l~~~~-tv~en 102 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAE--LYHYGIVRTFQTP-QPLKEM-TVLEN 102 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC----HHH--HHHHTEEECCCCC-GGGGGS-BHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC----HHH--HHhCCEEEEccCC-ccCCCC-cHHHH
Confidence 467899999999999999999999997777777777665432100 000 0012356666554 233222 23344
Q ss_pred HHhhceeEEEeeC------C--CCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCC
Q psy50 354 AMLADIIIHVVDV------S--NPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERV 411 (505)
Q Consensus 354 i~~ADliL~VvD~------s--~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~ 411 (505)
+...-.... ... . ........+.+.++++.+++....+.+ ...++++.+++-.+|
T Consensus 103 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE-- 179 (257)
T 1g6h_A 103 LLIGEICPG-ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE-- 179 (257)
T ss_dssp HHGGGTSTT-SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES--
T ss_pred HHHHHhhhc-cCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence 332210000 000 0 001122234567778888775422211 011123333333333
Q ss_pred CCCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 412 TEEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 412 ~~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
|+|+++..+...+.+.|.+..
T Consensus 180 ------Pts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 180 ------PIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp ------TTTTCCHHHHHHHHHHHHHHH
T ss_pred ------CccCCCHHHHHHHHHHHHHHH
Confidence 689999999999999998864
No 261
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.26 E-value=0.00019 Score=70.61 Aligned_cols=146 Identities=14% Similarity=0.171 Sum_probs=80.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++. ... ..... +....|++.+.+ .+...+ +..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~--~~~~~--~~~~i~~v~Q~~-~l~~~~-tv~e 119 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKD--TNLNK--VREEVGMVFQRF-NLFPHM-TVLN 119 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STT--CCHHH--HHHHEEEECSSC-CCCTTS-CHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccc--ccHHH--HhCcEEEEeCCC-cCCCCC-CHHH
Confidence 3577899999999999999999999997777777777665542 000 00000 012356666554 233322 2233
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
.+...-. ...........+.+.++++.+++.+..+.+ ...++.+.+++-.+| |
T Consensus 120 ~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE--------P 186 (263)
T 2olj_A 120 NITLAPM-----KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE--------P 186 (263)
T ss_dssp HHHHHHH-----HTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES--------T
T ss_pred HHHHHHH-----HHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC--------C
Confidence 3322100 000111122234566778888775422111 011122222222233 6
Q ss_pred EeccCcccHHHHHHHHHHHH
Q psy50 419 ISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l 438 (505)
+|+++..+...+.+.|.+..
T Consensus 187 ts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 187 TSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 89999999999999998764
No 262
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.26 E-value=0.00046 Score=72.43 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..++++|.+|+||||++..|.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998754
No 263
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.25 E-value=0.00017 Score=69.78 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 46789999999999999999999999777777777766554
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.24 E-value=0.00017 Score=70.20 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 46789999999999999999999999877777777766554
No 265
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.23 E-value=0.00029 Score=70.89 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+.++|+|++|||||||+|.|.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35789999999999999999999764
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.23 E-value=0.00012 Score=68.91 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCccceeeeeeeeeeeccccCCcceEEEEeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDS-LVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~-~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi 336 (505)
..+..|+|+|++|||||||+++|.+... ........+|..+.. +. .++..+.++|+..|.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~--gE-~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRK--SE-EDGKEYHFISTEEMT 77 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCT--TC-CTTSSCEECCHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcC--Ce-eccccceeccHHHhh
Confidence 4567899999999999999999998652 123344455554432 11 245666777777663
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.23 E-value=0.00016 Score=68.89 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI 73 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh
Confidence 46678999999999999999999998777777776665543
No 268
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.00032 Score=69.75 Aligned_cols=92 Identities=11% Similarity=-0.083 Sum_probs=60.0
Q ss_pred hhhhhH-HHHHhhceeEEEeeCCCCChHHHHHHH---HHHHHhcCcccccCccEEEEEeC-CCCCCCCCC----------
Q psy50 346 PFKVTL-EDAMLADIIIHVVDVSNPDYLQQKQHV---DETLQHLELEEKILEHVLVVGNK-VDAVPPGER---------- 410 (505)
Q Consensus 346 ~f~~tl-e~i~~ADliL~VvD~s~~~~~~~~~~v---~~~L~~lg~~~~~~~p~IlV~NK-iDl~~~~~~---------- 410 (505)
.++..+ .++..+|.+|||+|+++....+..+.+ ..+|.+-. .....|+++..|| -|+......
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~--~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~ 276 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF--GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 276 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHH--HCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchh--hcCCCeEEEEeCCcccccCCCCHHHHHHHcCCc
Confidence 334444 346779999999999987643322222 23443210 0123599999997 577543221
Q ss_pred --CCCCCeEEEeccCcccHHHHHHHHHHHHh
Q psy50 411 --VTEEYDLLISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 411 --~~~~~~v~iSA~~g~gi~eL~~~I~~~l~ 439 (505)
.....+.++||++|+|+.+-++||.+.+.
T Consensus 277 ~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 277 LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 01345899999999999999999998873
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.20 E-value=0.00022 Score=70.28 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=35.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 83 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL 83 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 457789999999999999999999999777777777766554
No 270
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.17 E-value=0.00027 Score=69.47 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHH
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLE 352 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle 352 (505)
...+..++|+|++|||||||++.|+|...+..+.+.+.+.++... .+....|++.+.|......+ +..+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----------~~~~~i~~v~q~~~~~~~~~-tv~e 98 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY----------EIRRNIGIAFQYPEDQFFAE-RVFD 98 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH----------HHGGGEEEECSSGGGGCCCS-SHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH----------HhhhhEEEEeccchhhcCCC-cHHH
Confidence 357789999999999999999999998767777776665543210 01123566665432122221 2333
Q ss_pred HHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcc--cccCcc--------------EEEEEeCCCCCCCCCCCCCCCe
Q psy50 353 DAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELE--EKILEH--------------VLVVGNKVDAVPPGERVTEEYD 416 (505)
Q Consensus 353 ~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~--~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~ 416 (505)
.+...-.. + .+.... .+.+.++++.+++. +..+.+ ...++++.+++-.++
T Consensus 99 nl~~~~~~-~---~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE------- 164 (266)
T 2yz2_A 99 EVAFAVKN-F---YPDRDP---VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE------- 164 (266)
T ss_dssp HHHHTTTT-T---CTTSCS---HHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-------
T ss_pred HHHHHHHh-c---CCHHHH---HHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-------
Confidence 33322110 1 111111 23455677777765 321111 001112222222222
Q ss_pred EEEeccCcccHHHHHHHHHHHH
Q psy50 417 LLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 417 v~iSA~~g~gi~eL~~~I~~~l 438 (505)
|+|+++..+...+.+.|.+..
T Consensus 165 -Pts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 165 -PLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp -TTTTCCHHHHHHHHHHHHHHH
T ss_pred -ccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999998764
No 271
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.16 E-value=0.00022 Score=70.67 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++.... .. ... +....|++.+.+........+..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~--~~-~~~--~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVG--YS-AET--VRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC-----CC-HHH--HHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEccccc--CC-HHH--HcCcEEEEEcCcccccCCCCCHHHH
Confidence 467899999999999999999999987777777776655432000 00 000 0112456554331111100123333
Q ss_pred HHhhcee-EEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCCCCCCCCCCCCCCeEE
Q psy50 354 AMLADII-IHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVDAVPPGERVTEEYDLL 418 (505)
Q Consensus 354 i~~ADli-L~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiDl~~~~~~~~~~~~v~ 418 (505)
+..+-.. ..+.. .+ .....+.+.++++.+++....+++ ...++++.+++-.++ |
T Consensus 120 l~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE--------P 188 (279)
T 2ihy_A 120 VISGAFKSIGVYQ--DI-DDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE--------P 188 (279)
T ss_dssp HHTTC-----------C-CHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES--------T
T ss_pred HHhhhhhcccccc--CC-cHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC--------C
Confidence 3322100 00011 01 122234566778888774422211 111122233322233 6
Q ss_pred EeccCcccHHHHHHHHHHHHh
Q psy50 419 ISATRGTGLAQLKEKVQDMIL 439 (505)
Q Consensus 419 iSA~~g~gi~eL~~~I~~~l~ 439 (505)
+|+++..+...+.+.|.+...
T Consensus 189 ts~LD~~~~~~l~~~l~~l~~ 209 (279)
T 2ihy_A 189 AAGLDFIARESLLSILDSLSD 209 (279)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHH
Confidence 899999999999999987653
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.12 E-value=0.00049 Score=62.32 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|++.. +..+.+.+.+.++
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 3567799999999999999999999987 6666666655543
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.10 E-value=0.00027 Score=68.87 Aligned_cols=136 Identities=14% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeeeccccCCcceEEEEeeeeeeecCCCCCcchhhhhHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLED 353 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~~~~~~~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~ 353 (505)
..+..++|+|++|||||||++.|+|...+. +.+.+.+.++... . ... +....|++.+.+. +...+ +..+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~----~-~~~--~~~~i~~v~q~~~-~~~~~-tv~e~ 93 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW----S-ATK--LALHRAYLSQQQT-PPFAT-PVWHY 93 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS----C-HHH--HHHHEEEECSCCC-CCTTC-BHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC----C-HHH--HhceEEEECCCCc-cCCCC-cHHHH
Confidence 467799999999999999999999997676 7776665543210 0 000 1123566665542 22221 22333
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc--------------EEEEEeCCC-------CCCCCCCCC
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH--------------VLVVGNKVD-------AVPPGERVT 412 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p--------------~IlV~NKiD-------l~~~~~~~~ 412 (505)
+.... .... . .+.+.++++.+++.+..+++ ...++.+.+ ++-.++
T Consensus 94 l~~~~-------~~~~-~---~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE--- 159 (249)
T 2qi9_C 94 LTLHQ-------HDKT-R---TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE--- 159 (249)
T ss_dssp HHTTC-------SSTT-C---HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS---
T ss_pred HHHhh-------ccCC-c---HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC---
Confidence 32210 0000 1 23455667766664322111 011122223 222233
Q ss_pred CCCeEEEeccCcccHHHHHHHHHHHH
Q psy50 413 EEYDLLISATRGTGLAQLKEKVQDMI 438 (505)
Q Consensus 413 ~~~~v~iSA~~g~gi~eL~~~I~~~l 438 (505)
|+|+++..+...+.+.|.+..
T Consensus 160 -----Pts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 160 -----PMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp -----TTTTCCHHHHHHHHHHHHHHH
T ss_pred -----CcccCCHHHHHHHHHHHHHHH
Confidence 689999999999999998764
No 274
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.10 E-value=0.00021 Score=71.83 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=36.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
.+.+..|+|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 457889999999999999999999998877778887777664
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.10 E-value=0.0003 Score=67.57 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
..+..++|+|++|||||||++.|+|...+..+.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 65 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE
Confidence 4678999999999999999999999875555544
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.09 E-value=0.00078 Score=67.17 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..++++|.+|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4558899999999999999998764
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.05 E-value=0.00028 Score=68.14 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN 306 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d 306 (505)
..+..++|+|++|||||||++.|+|...+..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 567899999999999999999999986443333
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.01 E-value=0.00031 Score=67.07 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=30.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCC--Cccceeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSL--VPRNQLFATLD 313 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~--~~~d~~ftTld 313 (505)
.+.+..++|+|++|||||||+++|++...+ ..+.+..+|..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 356789999999999999999999997642 33445455543
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.98 E-value=0.00032 Score=68.20 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD--DSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~--~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|. ..+..+.+.+.+.++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEEC
Confidence 46789999999999999999999996 334566666655543
No 280
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.95 E-value=0.0004 Score=68.24 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=32.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD--SLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~--~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|.. .+..+.+.+.+.++
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 3577899999999999999999999973 24456666655543
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.95 E-value=0.00052 Score=67.18 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=32.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|...+ .+.+.+.+.++
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV 83 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh
Confidence 356789999999999999999999998643 56666655543
No 282
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00055 Score=67.21 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
.. +..++|+|++|||||||++.|+|.. +..+.+.+.+.++
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~ 67 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV 67 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC
Confidence 35 7899999999999999999999998 8777777766543
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00047 Score=63.16 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..++|+|++|||||||++.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999864
No 284
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.90 E-value=0.00045 Score=64.71 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
...+..++|+|++|||||||+++|+|..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999999875
No 285
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.90 E-value=0.00044 Score=70.73 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i 64 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV 64 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 56789999999999999999999999877778877766654
No 286
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.83 E-value=0.00058 Score=68.03 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=28.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
...+..++|+|++|||||||++.|+|...+..+.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 95 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 35778999999999999999999999865444443
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.80 E-value=0.00064 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..++|+|++|||||||++.|++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999999999999999999864
No 288
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.79 E-value=0.0005 Score=64.17 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..++|+|++|||||||++.|++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999853
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.67 E-value=0.00072 Score=64.09 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f 309 (505)
..+..++|+|++|||||||++.|++.. + +.+.+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 467789999999999999999999975 3 55555
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.66 E-value=0.0012 Score=61.88 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
+.+..|+|+|++|||||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457789999999999999999999875
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.62 E-value=0.00086 Score=61.76 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.++|+|++|||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
No 292
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.62 E-value=0.0052 Score=56.51 Aligned_cols=68 Identities=18% Similarity=0.072 Sum_probs=46.2
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
....++++|||+... . .+...+..+|.+++++..+... .....+.+.++.++.. ....++.+|+|++
T Consensus 74 ~~yD~viiD~~~~~~-------~---~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS-------V---ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAY-SRKVEARFLITRK 140 (206)
T ss_dssp TTSSEEEEECCSSSS-------H---HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCG-GGCCEEEEEECSB
T ss_pred CCCCEEEEECCCCCC-------H---HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHh-CCCCcEEEEEecc
Confidence 357899999998431 1 1334455699999999887655 4456677777776532 1123678999999
Q ss_pred C
Q psy50 403 D 403 (505)
Q Consensus 403 D 403 (505)
|
T Consensus 141 ~ 141 (206)
T 4dzz_A 141 I 141 (206)
T ss_dssp C
T ss_pred C
Confidence 8
No 293
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.61 E-value=0.00081 Score=62.98 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=24.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+.+..|+|+|++|||||||++.|.+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999999999864
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.58 E-value=0.0011 Score=60.49 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..|+|+|+||||||||++.|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 35668999999999999999999986
No 295
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.57 E-value=0.0011 Score=68.83 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
...+..++|+|++|||||||++.|+|... ..+.+.+.+.++
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i 84 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSW 84 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEEC
Confidence 35778999999999999999999999864 566776666554
No 296
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.54 E-value=0.0017 Score=70.82 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh
Confidence 45679999999999999999999999877788887777654
No 297
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.50 E-value=0.0016 Score=70.99 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc
Confidence 35578999999999999999999999877777777766654
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.49 E-value=0.0011 Score=60.96 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..++|+|++|||||||++.|++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999865
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.49 E-value=0.001 Score=60.39 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
..+..++|+|++|||||||++++.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3567899999999999999999653
No 300
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.45 E-value=0.0015 Score=71.35 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i 419 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh
Confidence 45679999999999999999999999877778887777664
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.44 E-value=0.0012 Score=62.55 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
.+..++|+|++|||||||++.|+|. .+..+.+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4678999999999999999999998 6655555
No 302
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.44 E-value=0.0015 Score=71.36 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..++|+|++|||||||++.|+|...+..+.+.+.+.++
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i 408 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI 408 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEh
Confidence 45678999999999999999999999877777777776654
No 303
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.38 E-value=0.0013 Score=71.57 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..++|+|++|||||||++.|.|...+..+.+.+.+.+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 405 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 46679999999999999999999999877778887777664
No 304
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.38 E-value=0.00033 Score=70.38 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=52.0
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCC----CC--------CCCCeEEEec
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGE----RV--------TEEYDLLISA 421 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~----~~--------~~~~~v~iSA 421 (505)
+.++|.+++|+|+..|..... .+...|..... ..+|.++|+||+||.+... .. ...+++++||
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa 158 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS 158 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH--HHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred HHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec
Confidence 567999999999987765432 34444432111 1248899999999987633 10 1457899999
Q ss_pred cCcccHHHHHHHH
Q psy50 422 TRGTGLAQLKEKV 434 (505)
Q Consensus 422 ~~g~gi~eL~~~I 434 (505)
+++.|+++|++.+
T Consensus 159 ~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 159 KDQDSLADIIPHF 171 (307)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CCCCCHHHHHhhc
Confidence 9999988776554
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.38 E-value=0.0013 Score=62.49 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=18.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHh-CCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALT-DDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~-g~~ 300 (505)
..+..++|+|++|||||||++.|. +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456789999999999999999999 764
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.34 E-value=0.0015 Score=60.82 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999986
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.32 E-value=0.0018 Score=65.01 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+.+..++|+|++|||||||++.|+|..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45678899999999999999999999863
No 308
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.29 E-value=0.0018 Score=70.63 Aligned_cols=41 Identities=29% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..++|+|++|||||||++.|.|...+..+.+.+.+.++
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 45679999999999999999999999877778887776664
No 309
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.27 E-value=0.0018 Score=62.08 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---CCCCCCccce
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALT---DDDSLVPRNQ 307 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~---g~~~~~~~d~ 307 (505)
+...|+|+|++|||||||++.|+ |...+..++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 45789999999999999999999 7754443343
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.27 E-value=0.0018 Score=63.45 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ccceeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLV-PRNQLFA 310 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~-~~d~~ft 310 (505)
..+..|+|+|++|||||||+++|++...+. .+.+.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 456789999999999999999999864333 3444433
No 311
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.21 E-value=0.0026 Score=58.63 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..|+|+|++|||||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999875
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.21 E-value=0.0027 Score=58.89 Aligned_cols=28 Identities=36% Similarity=0.285 Sum_probs=24.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
...+..|+|+|++|||||||.+.|.+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999998753
No 313
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0014 Score=65.65 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
..+..++++|++|||||||++.|++...+..+.+.+.+.|
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 4566899999999999999999998643334444444443
No 314
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.19 E-value=0.0032 Score=64.47 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f 309 (505)
.+..++|+|++|||||||+|+|++...+..+.+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 45689999999999999999999986554444443
No 315
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0026 Score=68.69 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
..+..++|+|++|||||||++.|+|...+..+.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 4567899999999999999999999865555543
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.17 E-value=0.0026 Score=59.00 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|++|||||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999864
No 317
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.10 E-value=0.0038 Score=67.45 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN 306 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d 306 (505)
..+..++|+|++|||||||++.|+|...+..+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 577899999999999999999999986554444
No 318
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.07 E-value=0.003 Score=63.89 Aligned_cols=35 Identities=31% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeee
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA 310 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft 310 (505)
+..++|+|++|||||||+|+|++...+..+.+.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 45899999999999999999999865544544443
No 319
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0038 Score=68.38 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
..+..++|+|++|||||||++.|+|...+..+.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3678999999999999999999999876655544
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.05 E-value=0.0031 Score=59.80 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~ 297 (505)
+.+..++|+|++|||||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 467899999999999999999998
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.04 E-value=0.0027 Score=59.09 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl 312 (505)
.+++|+|++|||||||++.|++... ..+ +.+.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~ 35 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGF 35 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCE
Confidence 4689999999999999999998753 334 444443
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.02 E-value=0.0028 Score=63.69 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
...+..|+|+|++|||||||++.|.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567799999999999999999999864
No 323
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.00 E-value=0.0052 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..++|+|++|+|||||++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998853
No 324
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.00 E-value=0.0024 Score=59.76 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
+.+..++|+|++|||||||++.|++..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999843
No 325
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.97 E-value=0.0034 Score=74.84 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t 315 (505)
+.+.+|||||++|||||||++.|.+...+..+.+...+.|+.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh
Confidence 456799999999999999999999998788888888887754
No 326
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.0046 Score=66.81 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f 309 (505)
..+..++|+|++|||||||++.|+|...+..+.+.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 467899999999999999999999987666666543
No 327
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.88 E-value=0.003 Score=67.30 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeee
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTl 312 (505)
..++|+|++|||||||+++|+|...+..+.+.+.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 789999999999999999999875555555555443
No 328
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.85 E-value=0.0038 Score=55.98 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
+..|+|+|++|||||||.+.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998753
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.83 E-value=0.0038 Score=59.91 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..|+|+|++|||||||++.|.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999875
No 330
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0053 Score=65.03 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPR 305 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~ 305 (505)
..+.+|+|+|++|||||||++.|+|...+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 47889999999999999999999997533333
No 331
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.82 E-value=0.004 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g 298 (505)
..++|+|++|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999986
No 332
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.81 E-value=0.0053 Score=66.27 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
..+.+++|+|++|||||||++.|+|...+..+.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i 343 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3678999999999999999999999875655554
No 333
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.80 E-value=0.0057 Score=66.99 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccc
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRN 306 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d 306 (505)
..+..++|+|++|||||||++.|+|...+..+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 467899999999999999999999986555444
No 334
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0027 Score=65.16 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
..+..|+|+|++|||||||++.|++...+..+.+.+.+.|
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 3566899999999999999999998643334444444443
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.75 E-value=0.015 Score=58.68 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
....|+|+|++|||||||++.|.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999997753
No 336
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.74 E-value=0.0047 Score=55.60 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|++||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999764
No 337
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.69 E-value=0.0062 Score=66.71 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccce
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~ 307 (505)
..+..++|+|++|||||||++.|+|...+..+.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 3578999999999999999999999875555554
No 338
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.67 E-value=0.0026 Score=58.27 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..|+|+|++|||||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999874
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.66 E-value=0.0049 Score=61.56 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+..|+|+|++|||||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999853
No 340
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.63 E-value=0.025 Score=52.84 Aligned_cols=110 Identities=18% Similarity=0.074 Sum_probs=61.5
Q ss_pred EEEEE-cCCCCCHHHHHHHHhCCCCCCccceeeeeeeeeee------------------c-cccCCcceEEEEeeeee-e
Q psy50 278 TVAVV-GYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTH------------------E-GMLPNRLRILYVDTIGF-I 336 (505)
Q Consensus 278 ~VaLV-G~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~t~~------------------~-~~~~~~~~v~l~DT~Gf-i 336 (505)
+|+++ +..|+||||+.-.|...-.... ..+.-..|+... . ..+.....++++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 46665 6789999999777653310011 222212221100 0 00124568999999984 2
Q ss_pred ecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 337 ~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
. . .+...+..+|.+++++..+... ......+.+.++.+. ..++.+|+|++|.
T Consensus 81 ~-------~---~~~~~l~~aD~viiv~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~vv~N~~~~ 132 (209)
T 3cwq_A 81 D-------E---DLEALADGCDLLVIPSTPDALA-LDALMLTIETLQKLG-----NNRFRILLTIIPP 132 (209)
T ss_dssp S-------S---HHHHHHHTSSEEEEEECSSHHH-HHHHHHHHHHHHHTC-----SSSEEEEECSBCC
T ss_pred c-------H---HHHHHHHHCCEEEEEecCCchh-HHHHHHHHHHHHhcc-----CCCEEEEEEecCC
Confidence 1 1 1233455799999998865322 223344555565542 1368899999984
No 341
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.62 E-value=0.0048 Score=64.52 Aligned_cols=36 Identities=28% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeee
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA 310 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ft 310 (505)
.+..|+|+|+||||||||+++|++...+..+.+.+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 456899999999999999999998754444444443
No 342
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.60 E-value=0.011 Score=60.53 Aligned_cols=72 Identities=26% Similarity=0.302 Sum_probs=48.0
Q ss_pred HHhhceeEEEeeCCCCChHHHHHHHHHHH---HhcCcccccCccEEEEEeCCCCCCCCC------C-----CCCCCeEEE
Q psy50 354 AMLADIIIHVVDVSNPDYLQQKQHVDETL---QHLELEEKILEHVLVVGNKVDAVPPGE------R-----VTEEYDLLI 419 (505)
Q Consensus 354 i~~ADliL~VvD~s~~~~~~~~~~v~~~L---~~lg~~~~~~~p~IlV~NKiDl~~~~~------~-----~~~~~~v~i 419 (505)
+.++|.+++| |+..|.... ..+...| ...+ +|.++|+||+||.+... . ....+++++
T Consensus 128 ~anvD~v~iv-~a~~P~~~~--~~i~r~L~~a~~~~------~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSL--NIIDRYLVGCETLQ------VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp EECCCEEEEE-EESTTTCCH--HHHHHHHHHHHHHT------CEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred HhcCCEEEEE-EeCCCCCCH--HHHHHHHHHHHhcC------CCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEE
Confidence 3568999876 555565432 1233333 2233 37899999999987543 0 114579999
Q ss_pred eccCcccHHHHHHHH
Q psy50 420 SATRGTGLAQLKEKV 434 (505)
Q Consensus 420 SA~~g~gi~eL~~~I 434 (505)
||.++.|+++|...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999988754
No 343
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.57 E-value=0.01 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..++|+|+||+|||||++++.+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998753
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.55 E-value=0.015 Score=55.63 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy50 279 VAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
++|+|+||+|||||++++++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999864
No 345
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.15 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.+.|+||+|||+|.+++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999875
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.53 E-value=0.0054 Score=62.77 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
+..|+|+|+||||||||+++|++..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3489999999999999999998864
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.51 E-value=0.0073 Score=55.41 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+.++|+|++|||||||+++|.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999875
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.49 E-value=0.0083 Score=57.97 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHh---CCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALT---DDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~---g~~ 300 (505)
..+..|+|+|++||||||+++.|. |..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 356799999999999999999999 654
No 349
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.45 E-value=0.0075 Score=71.64 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+.+++|||++|||||||++.|.|...+..+.+...+.++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI 454 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEH
Confidence 45679999999999999999999999877777777766554
No 350
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.12 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+.+.|.|++|+|||||+++|.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344999999999999999999883
No 351
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.43 E-value=0.0077 Score=55.94 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+..|+|+|++|||||||.+.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999998754
No 352
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.41 E-value=0.0081 Score=61.24 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=27.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCcc
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPR 305 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~ 305 (505)
...+.+++|+|++|||||||++.|++...+..+
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 346789999999999999999999998654433
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.41 E-value=0.0084 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|+|+|++||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.40 E-value=0.0062 Score=62.64 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+..|+|+|+||||||||+++|++..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356689999999999999999999864
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.39 E-value=0.0088 Score=71.26 Aligned_cols=41 Identities=32% Similarity=0.427 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+..|||||++|||||||++.|.|...+..+.+...+.++
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i 482 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDV 482 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccc
Confidence 45679999999999999999999999877777777766553
No 356
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.37 E-value=0.017 Score=56.72 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy50 279 VAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
++|+|+||+|||||+++|++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999864
No 357
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.35 E-value=0.025 Score=55.89 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=39.4
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE-EEEeC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL-VVGNK 401 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I-lV~NK 401 (505)
....++++|||+.... ..+.. .+..||.+++|++.+.. .......+.+.++.++... ..+++ +|+|+
T Consensus 155 ~~yD~ViiD~p~~~~~------~~~~~---~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~--~~~~~gvV~N~ 222 (307)
T 3end_A 155 DDTDVVIFDVLGDVVC------GGFAA---PLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNY--KVRLAGCVANR 222 (307)
T ss_dssp SSCSEEEEEECCSSCC------GGGGG---GGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTC--CCEEEEEEEES
T ss_pred ccCCEEEEeCCCccch------HHHHH---HHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcC--CCceEEEEEec
Confidence 3567899999874321 11111 13459999999875432 2233445566666553211 12433 89999
Q ss_pred CC
Q psy50 402 VD 403 (505)
Q Consensus 402 iD 403 (505)
++
T Consensus 223 ~~ 224 (307)
T 3end_A 223 SR 224 (307)
T ss_dssp CS
T ss_pred CC
Confidence 98
No 358
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.31 E-value=0.044 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.....+.|.|+||+|||+|.+++.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556999999999999999999865
No 359
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.30 E-value=0.02 Score=55.70 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy50 279 VAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
|+|+|+||+|||||+++|.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999999864
No 360
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.25 E-value=0.0097 Score=55.18 Aligned_cols=27 Identities=41% Similarity=0.448 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+..|+|+|.+|||||||.+.|.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999999863
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.23 E-value=0.0063 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..|+|+|.+|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56678999999999999999999886
No 362
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.21 E-value=0.0063 Score=62.08 Aligned_cols=27 Identities=30% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSL 302 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~ 302 (505)
+.+++|+|++|||||||++.|+|...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999997644
No 363
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.013 Score=64.13 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCcc
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSLVPR 305 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~ 305 (505)
+..++|+|++|||||||++.|+|...+..+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 367999999999999999999998755544
No 364
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.19 E-value=0.0066 Score=69.77 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~f 309 (505)
..+.+++|+|++|||||||++.|+|...+..+.+.+
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 466799999999999999999999987666666544
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.18 E-value=0.017 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..|+|+|.+|||||||++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 366
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.17 E-value=0.012 Score=63.20 Aligned_cols=27 Identities=33% Similarity=0.190 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDDSL 302 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~~~ 302 (505)
+..++|+|+||||||||+|+|++...+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 446999999999999999999997533
No 367
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.16 E-value=0.057 Score=56.84 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~ 297 (505)
....|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 55688999999999999999665
No 368
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.15 E-value=0.01 Score=62.45 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeee
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT 311 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftT 311 (505)
...+.+++|+|++|||||||++.|++...+..+.+.+.+
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 446789999999999999999999998655555444443
No 369
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.14 E-value=0.011 Score=54.61 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|++||||||+.+.|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 370
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.13 E-value=0.01 Score=70.43 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDV 314 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld~ 314 (505)
+.+.+|+|+|++|||||||++.|.|...+..+.+.+.+.++
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEc
Confidence 45679999999999999999999999877778887777664
No 371
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.08 E-value=0.012 Score=52.01 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q psy50 277 PTVAVVGYTNCGKTTLIKAL 296 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L 296 (505)
..|+|+|+|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 372
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.03 E-value=0.11 Score=50.74 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=40.4
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE-EEEeCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL-VVGNKVD 403 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I-lV~NKiD 403 (505)
..++++|||+... ..+ +..-...+|.+++|+...... ........+.++..+. +++ +|+|++|
T Consensus 192 yD~VIIDtpp~~~-----~~d----~~~l~~~aD~vilVv~~~~~~-~~~~~~~~~~l~~~~~------~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNT-----VTD----AQLFSKFTGNVVYVVNSENNN-KDEVKKGKELIEATGA------KLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTT-----CSH----HHHHHHHHCEEEEEEETTSCC-HHHHHHHHHHHHTTTC------EEEEEEEEEEC
T ss_pred CCEEEEeCCCCch-----HHH----HHHHHHHCCEEEEEEeCCCCc-HHHHHHHHHHHHhCCC------CEEEEEEeCCc
Confidence 4688999988432 111 122234689999999876544 3335555666665553 444 8999998
Q ss_pred CC
Q psy50 404 AV 405 (505)
Q Consensus 404 l~ 405 (505)
..
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 373
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.02 E-value=0.0099 Score=55.18 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy50 279 VAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 279 VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
|+|+|++|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998653
No 374
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.01 E-value=0.012 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|+|++||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999873
No 375
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.00 E-value=0.0015 Score=62.67 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCccceeeeeee
Q psy50 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~~~~~~~d~~ftTld 313 (505)
.++|+|++|||||||+++|++...+..+++.+...+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 357899999999999999999765666666555443
No 376
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.99 E-value=0.011 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g 298 (505)
..|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 377
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.96 E-value=0.012 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|+|.+||||||+.+.|.+.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 378
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.96 E-value=0.14 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
-|.|+|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.94 E-value=0.013 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+|+|++|||||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999764
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.94 E-value=0.026 Score=55.95 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.....|+|+|++|||||||.+.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988753
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.94 E-value=0.012 Score=54.86 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..++|+|+||||||||++.|++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 382
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.91 E-value=0.013 Score=57.59 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
...+..++|+|+||+|||||++.|++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 383
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.89 E-value=0.015 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 384
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.86 E-value=0.17 Score=49.78 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.....|.|.|+||+|||+|.+++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345679999999999999999998753
No 385
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.2 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.+.|+||+|||+|.+++++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445899999999999999999875
No 386
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.69 E-value=0.0076 Score=63.74 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|.++|.|||||||+.+.|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 387
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.68 E-value=0.1 Score=51.39 Aligned_cols=67 Identities=7% Similarity=0.001 Sum_probs=43.1
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
..++++|||.... .. .+..-...+|.+++|+....... .......+.|+..+.. .+-+|+|++|.
T Consensus 202 yD~VIIDtpp~~~-----~~----da~~l~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~g~~-----~~GvVlN~v~~ 266 (286)
T 3la6_A 202 YDLVLIDTPPILA-----VT----DAAIVGRHVGTTLMVARYAVNTL-KEVETSLSRFEQNGIP-----VKGVILNSIFR 266 (286)
T ss_dssp CSEEEEECCCTTT-----CT----HHHHHTTTCSEEEEEEETTTSBH-HHHHHHHHHHHHTTCC-----CCEEEEEEECC
T ss_pred CCEEEEcCCCCcc-----hH----HHHHHHHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhCCCC-----EEEEEEcCccc
Confidence 4688999987432 11 11222345899999998765543 3455566777776642 46689999985
Q ss_pred CC
Q psy50 405 VP 406 (505)
Q Consensus 405 ~~ 406 (505)
..
T Consensus 267 ~~ 268 (286)
T 3la6_A 267 RA 268 (286)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 388
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.64 E-value=0.11 Score=49.02 Aligned_cols=67 Identities=16% Similarity=0.069 Sum_probs=42.6
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVD 403 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiD 403 (505)
...++++|||+.... .+...+..+|.+++|+..+.. .......+.+.++.++.+. ..+-+|+|++|
T Consensus 118 ~yD~viiD~p~~~~~----------~~~~~l~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~---~~~~~v~N~~~ 183 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH----------VGVWVLEHLDELCIVTTPSLQ-SLRRAGQLLKLCKEFEKPI---SRIEIILNRAD 183 (245)
T ss_dssp HCSEEEEEEESSCCT----------THHHHGGGCSEEEEEECSSHH-HHHHHHHHHHHHHTCSSCC---SCEEEEEESTT
T ss_pred hCCEEEEeCCCCCch----------HHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhCCCc---cceEEEEecCC
Confidence 457899999984421 123345569999999876532 2333455566666665322 36789999998
Q ss_pred C
Q psy50 404 A 404 (505)
Q Consensus 404 l 404 (505)
.
T Consensus 184 ~ 184 (245)
T 3ea0_A 184 T 184 (245)
T ss_dssp S
T ss_pred C
Confidence 4
No 389
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.61 E-value=0.017 Score=52.52 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999765
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.58 E-value=0.021 Score=53.26 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...+..|+|+|.+||||||+.+.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999764
No 391
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.44 E-value=0.021 Score=50.97 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q psy50 278 TVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g 298 (505)
.|.|+|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.44 E-value=0.019 Score=51.93 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|.+||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 393
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.42 E-value=0.022 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.009 Sum_probs=23.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
...+..++|+|+||+|||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34677899999999999999999987
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.41 E-value=0.024 Score=51.76 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+.++|+|++|||||||++.|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 395
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.40 E-value=0.025 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..|.|+|++||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998753
No 396
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.40 E-value=0.024 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
+..|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 397
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.34 E-value=0.022 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+..|.|+|.|||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 398
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.31 E-value=0.11 Score=49.77 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=42.9
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
....++++|||+... . .+...+..||.+++++..+.. .......+.+.++.++.. .++.+|+|++
T Consensus 143 ~~yD~viiD~pp~~~--------~--~~~~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l~~~~~~----~~~~vv~N~~ 207 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--------V--TLKNALLCSDYVIIPMTAEKW-AVESLDLFNFFVRKLNLF----LPIFLIITRF 207 (267)
T ss_dssp TTCSEEEEEECSSCS--------H--HHHHHHTTCSEEEEEEESCTT-HHHHHHHHHHHHHTTTCC----CCEEEEEEEE
T ss_pred cCCCEEEEECcCCcc--------H--HHHHHHHHCCeEEEEeCCChH-HHHHHHHHHHHHHHHhcc----CCEEEEEecc
Confidence 346789999987321 1 133445569999999987543 333455666777766532 3677999998
Q ss_pred C
Q psy50 403 D 403 (505)
Q Consensus 403 D 403 (505)
+
T Consensus 208 ~ 208 (267)
T 3k9g_A 208 K 208 (267)
T ss_dssp C
T ss_pred c
Confidence 4
No 399
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.31 E-value=0.66 Score=46.15 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.|.|+||+|||+|.+++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457899999999999999999875
No 400
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.29 E-value=0.025 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 401
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.27 E-value=0.02 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
+..|+|+|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 402
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.25 E-value=0.021 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..++|+|+||+|||||+..|++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999984
No 403
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.20 E-value=0.031 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..|+|.|.+||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.19 E-value=0.027 Score=50.03 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHh
Q psy50 277 PTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~ 297 (505)
...+|+|++|+|||||+.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999986
No 405
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.19 E-value=0.03 Score=51.02 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999765
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.16 E-value=0.035 Score=53.48 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+..|.|+|+|||||||+.+.|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999998653
No 407
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.13 E-value=0.024 Score=57.96 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy50 278 TVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~ 297 (505)
.++|+|++|||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999987
No 408
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.12 E-value=0.031 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 409
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.12 E-value=0.067 Score=50.27 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=42.5
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKV 402 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKi 402 (505)
....++++|||+.... .+...+..||.+++|++.+.. .......+.+.+..++. ..+.+|+|+.
T Consensus 130 ~~yD~viiD~pp~~~~----------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~~-----~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH----------LTRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLGI-----KKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTT----------CCHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHTC-----SCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccH----------HHHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcCC-----ccEEEEEeCC
Confidence 4567899999874321 123345669999999986533 23334555666666665 2578999998
Q ss_pred C
Q psy50 403 D 403 (505)
Q Consensus 403 D 403 (505)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 7
No 410
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.37 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..-|.+.|+||+|||+|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 345899999999999999999875
No 411
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.37 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.+.|+||+|||+|.+++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4456899999999999999999875
No 412
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.07 E-value=0.027 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 413
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.04 E-value=0.031 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|.|+|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 414
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.01 E-value=0.33 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|.|.|+||+|||+|..++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999765
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.93 E-value=0.026 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
+..|+|+|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.91 E-value=0.036 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|.|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 417
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.91 E-value=0.03 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 418
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.90 E-value=0.033 Score=50.19 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|.|+|.+||||||+.+.|...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999743
No 419
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.85 E-value=0.2 Score=47.51 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.|.|+||+|||+|.+++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999864
No 420
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.32 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.+.|+||+|||+|.+++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3456999999999999999999876
No 421
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.82 E-value=0.033 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4467999999999999999999875
No 422
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.77 E-value=0.036 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|.|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.75 E-value=0.049 Score=56.07 Aligned_cols=28 Identities=32% Similarity=0.197 Sum_probs=24.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 272 QRQKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 272 ~~~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+.+..++|+|++|+|||||++.|.+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456679999999999999999999874
No 424
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.66 E-value=0.042 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|+|+|.|||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 425
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.62 E-value=0.032 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
...++|+|+||+|||||++++++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3568999999999999999998863
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.57 E-value=0.041 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 427
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.55 E-value=0.017 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 428
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.53 E-value=0.033 Score=63.99 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
..+..++|+|++|||||||++.|++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 429
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.53 E-value=0.013 Score=60.40 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+ .++|+|++||||||||++|.+.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 455 9999999999999999998543
No 430
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.43 E-value=0.04 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..|+|+|.|||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.40 E-value=0.046 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|+|+|.+||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 432
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.38 E-value=0.043 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|+|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
No 433
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.33 E-value=0.27 Score=47.89 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=39.0
Q ss_pred cceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCcc-EEEEEeCC
Q psy50 324 RLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH-VLVVGNKV 402 (505)
Q Consensus 324 ~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p-~IlV~NKi 402 (505)
...++++|||+... .. +...+..||.+++++..+.... .....+.+.+..+.-.-....+ .-+|+|+.
T Consensus 154 ~yD~IiiD~pp~~~-------~~---~~~~l~~aD~viiv~~~~~~s~-~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPS-------VY---TNNAIVASDYVMIPLQAEEEST-NNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCS-------HH---HHHHHHHCSEEEEEECGGGCCH-HHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCcc-------HH---HHHHHHHCCeEEEEecCcHHHH-HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 45789999988432 11 2233446999999998765433 2334444455443100001124 45899999
Q ss_pred CC
Q psy50 403 DA 404 (505)
Q Consensus 403 Dl 404 (505)
|.
T Consensus 223 ~~ 224 (298)
T 2oze_A 223 DT 224 (298)
T ss_dssp CT
T ss_pred CC
Confidence 84
No 434
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.31 E-value=0.042 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..|+|+|+|||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 435
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.30 E-value=0.042 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.-|.|+|+||+|||||++++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 436
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.29 E-value=0.24 Score=48.93 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=40.6
Q ss_pred ceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEEEEEeCCCC
Q psy50 325 LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDA 404 (505)
Q Consensus 325 ~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl 404 (505)
..++++|||+... ..+ +..-...+|.+++|+....... .......+.++..+.+ ..-+|+|++|.
T Consensus 214 yD~VIIDtpp~~~-----~~d----~~~l~~~ad~vilV~~~~~~~~-~~~~~~~~~l~~~~~~-----~~GvVlN~~~~ 278 (299)
T 3cio_A 214 YDLVIVDTPPMLA-----VSD----AAVVGRSVGTSLLVARFGLNTA-KEVSLSMQRLEQAGVN-----IKGAILNGVIK 278 (299)
T ss_dssp CSEEEEECCCTTT-----CTH----HHHHGGGCSEEEEEEETTTSCT-THHHHHHHHHHHTTCC-----CCCEEEEECCC
T ss_pred CCEEEEcCCCCch-----hHH----HHHHHHHCCEEEEEEcCCCChH-HHHHHHHHHHHhCCCC-----eEEEEEeCCcc
Confidence 4688999988432 111 1112346899999998765443 3345566667766542 23488899985
Q ss_pred C
Q psy50 405 V 405 (505)
Q Consensus 405 ~ 405 (505)
.
T Consensus 279 ~ 279 (299)
T 3cio_A 279 R 279 (299)
T ss_dssp C
T ss_pred C
Confidence 4
No 437
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.26 E-value=0.023 Score=60.87 Aligned_cols=39 Identities=13% Similarity=-0.025 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHH--HhCCCCCCccceeeeee
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKA--LTDDDSLVPRNQLFATL 312 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~--L~g~~~~~~~d~~ftTl 312 (505)
..+..++|+|+||||||||++. +.|...+..+...+++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4678999999999999999999 55653223344444443
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.25 E-value=0.047 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 439
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.21 E-value=0.047 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+|+|.|+|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 440
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.19 E-value=0.094 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..|.|+|+|||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999754
No 441
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.17 E-value=0.12 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....+.|.|++|+|||+|++++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998765
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.17 E-value=0.04 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
..+..++|+|+||+|||||+..+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999886
No 443
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.17 E-value=0.026 Score=62.32 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~ 297 (505)
..+..++|+|++|||||||+|.++
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 467899999999999999998754
No 444
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.13 E-value=0.063 Score=49.32 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|+|+|.|||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999754
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.08 E-value=0.047 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+.|+|+|.|||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.06 E-value=0.046 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..|+|.|.+||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998764
No 447
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.03 E-value=0.053 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.01 E-value=0.05 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|.|+|.|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 449
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.92 E-value=0.055 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+|+|+|+|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 450
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.91 E-value=0.049 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|+|+||||||||.+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999754
No 451
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.90 E-value=0.057 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|.|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 452
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.87 E-value=0.43 Score=45.77 Aligned_cols=67 Identities=13% Similarity=-0.005 Sum_probs=40.0
Q ss_pred CcceEEEEeeeeeeecCCCCCcchhhhhHHHHHhhceeEEEeeCCCCChHHHHHHHHHHHHhcCcccccCccEE-EEEeC
Q psy50 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL-VVGNK 401 (505)
Q Consensus 323 ~~~~v~l~DT~Gfi~~lp~~lie~f~~tle~i~~ADliL~VvD~s~~~~~~~~~~v~~~L~~lg~~~~~~~p~I-lV~NK 401 (505)
....++++|||+... .... +...+..+|.+++|+..+.... .......+.++..++ +++ +|+|+
T Consensus 127 ~~yD~ViID~pp~~~-------~~~~-~~~~~~~aD~viiv~~~~~~s~-~~~~~~~~~l~~~~~------~~~gvV~N~ 191 (262)
T 2ph1_A 127 GELDHLLIDLPPGTG-------DAPL-TVMQDAKPTGVVVVSTPQELTA-VIVEKAINMAEETNT------SVLGLVENM 191 (262)
T ss_dssp CSCSEEEEECCSSSS-------SHHH-HHHHHHCCSEEEEEECSSSCCH-HHHHHHHHHHHTTTC------CEEEEEETT
T ss_pred cCCCEEEEECcCCCc-------hHHH-HHHhhccCCeEEEEecCccchH-HHHHHHHHHHHhCCC------CEEEEEECC
Confidence 346789999988432 1111 1112235899999988765443 334445555655443 555 89999
Q ss_pred CCC
Q psy50 402 VDA 404 (505)
Q Consensus 402 iDl 404 (505)
.|.
T Consensus 192 ~~~ 194 (262)
T 2ph1_A 192 SYF 194 (262)
T ss_dssp CCE
T ss_pred Ccc
Confidence 884
No 453
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.82 E-value=0.059 Score=48.66 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q psy50 278 TVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g 298 (505)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.81 E-value=0.059 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHh
Q psy50 277 PTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~ 297 (505)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999975
No 455
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.80 E-value=0.5 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|.|.|+||+|||+|.+++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 4456999999999999999999764
No 456
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.78 E-value=0.049 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...|.|.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999754
No 457
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.77 E-value=0.037 Score=59.84 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+..|+|+|++|||||||+++|.+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 456789999999999999999999864
No 458
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.77 E-value=0.063 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..|+|+|.+||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.74 E-value=0.064 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
...+..|+|+|.+||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999986
No 460
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.74 E-value=0.058 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 461
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.74 E-value=0.064 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 462
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.69 E-value=0.19 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.....+.|.|+||+|||+|.+++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999877654
No 463
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.64 E-value=0.17 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
....|.|.|+||+|||||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998753
No 464
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.64 E-value=0.077 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|.|+|||||||+.+.|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 465
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.55 E-value=0.073 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|.|++||||||+.+.|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999743
No 466
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.47 Score=49.97 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+...-|.|.|+||+|||+|.+++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 34456899999999999999999875
No 467
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.53 E-value=0.063 Score=55.86 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..++|+|++|+|||||++++.+.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999864
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.47 E-value=0.066 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+..|+|+|.|||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 469
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.39 E-value=0.36 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|.|.|+||+|||+|.+++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 470
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.34 E-value=0.062 Score=53.69 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q psy50 278 TVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g 298 (505)
..+|+|++|||||||+.+|..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 889999999999999999983
No 471
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.34 E-value=0.066 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHh
Q psy50 276 FPTVAVVGYTNCGKTTLIKALT 297 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~ 297 (505)
....+|+|++|+|||||+.+++
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999974
No 472
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.22 E-value=0.71 Score=40.02 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..-|.|.|+||+|||++..++....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998653
No 473
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.18 E-value=0.22 Score=50.46 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...+-.+.|.|+||+|||||+..++..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 456778999999999999998877543
No 474
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.12 E-value=0.078 Score=49.32 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q psy50 278 TVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g 298 (505)
.|+|.|.|||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 475
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.92 E-value=0.16 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....+.|.|++|+|||+|+.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998764
No 476
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.90 E-value=0.089 Score=58.07 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.4
Q ss_pred CCCCEEEEEcCCCCCHHHHH
Q psy50 274 QKFPTVAVVGYTNCGKTTLI 293 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLl 293 (505)
..+..++|+|++|||||||+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 56789999999999999996
No 477
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.89 E-value=0.11 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|+|.+||||||+.+.|...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 478
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.88 E-value=0.17 Score=46.93 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....+.|.|+||+|||||++++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 479
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.83 E-value=0.097 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
++...|.|+|+|||||+|....|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45567889999999999999999865
No 480
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.82 E-value=0.089 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
..+..++|+|+||+|||||+..++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999776653
No 481
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.82 E-value=0.091 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 482
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.81 E-value=0.085 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+.|+|.|.+||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999763
No 483
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.80 E-value=0.093 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..++|+|+||+|||||+++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5778999999999999999999875
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.76 E-value=0.064 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 273 RQKFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 273 ~~~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+.+..++|+|+||+|||||++.|++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466789999999999999999999864
No 485
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.71 E-value=0.16 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+.|.|+||+|||+|.+++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45677799999999999999865
No 486
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.58 E-value=0.18 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
+.+.|.|++|+|||||++.+.+..
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998753
No 487
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.57 E-value=0.096 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|.|.+||||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999763
No 488
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.38 E-value=0.14 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 274 QKFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 274 ~~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+..+.|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999874
No 489
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.37 E-value=0.096 Score=59.09 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
.+..++|+|++|+||||||+.+.+.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4568999999999999999999874
No 490
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.36 E-value=0.089 Score=53.77 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q psy50 278 TVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g 298 (505)
.++|+|++|+|||||++++.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 889999999999999999975
No 491
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.35 E-value=0.12 Score=45.95 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
....|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 492
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.01 E-value=0.12 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTD 298 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g 298 (505)
...|+|+|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999973
No 493
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.01 E-value=0.67 Score=52.23 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
...-|.|.|+||+|||+|.+++.+..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999864
No 494
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.00 E-value=0.75 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
...-|.|.|+||+|||+|.+++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 495
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.99 E-value=0.13 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
..+.|+|+|+||||||||...|....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34589999999999999999998764
No 496
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.92 E-value=0.27 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy50 277 PTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 277 ~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
..+.|.|+||+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999998864
No 497
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=90.87 E-value=0.11 Score=58.39 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Q psy50 276 FPTVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 276 ~~~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
+..++|+|++|+|||||++.+.+.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 568999999999999999999875
No 498
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.85 E-value=0.13 Score=48.28 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Q psy50 275 KFPTVAVVGYTNCGKTTLIKALTDDD 300 (505)
Q Consensus 275 ~~~~VaLVG~~NaGKSTLlN~L~g~~ 300 (505)
.+..|+|+|+||+|||||...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 44568999999999999999998763
No 499
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.85 E-value=2.6 Score=41.24 Aligned_cols=67 Identities=7% Similarity=0.091 Sum_probs=34.9
Q ss_pred ceeEEEeeCCCCCh-HHHHHHHHHHHHhcCcccccCccEEEEEeCCCCCCCCCCCCCCCeEEEeccCcccHHH
Q psy50 358 DIIIHVVDVSNPDY-LQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQ 429 (505)
Q Consensus 358 DliL~VvD~s~~~~-~~~~~~v~~~L~~lg~~~~~~~p~IlV~NKiDl~~~~~~~~~~~~v~iSA~~g~gi~e 429 (505)
+.-++++|=.+... ......+...++.... ..++|+..|..+.....- ......+.+...+.....+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~----~~~iI~~~n~~~~l~~~l-~sR~~~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSS----NCSIIITANNIDGIIKPL-QSRCRVITFGQPTDEDKIE 172 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGG----GCEEEEEESSGGGSCTTH-HHHSEEEECCCCCHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCC----CcEEEEEeCCccccCHHH-HhhCcEEEeCCCCHHHHHH
Confidence 45566667555544 4444556666665321 236777778776433221 1123456666666555333
No 500
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.85 E-value=0.14 Score=48.99 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy50 278 TVAVVGYTNCGKTTLIKALTDD 299 (505)
Q Consensus 278 ~VaLVG~~NaGKSTLlN~L~g~ 299 (505)
-|.|.|+||+|||+|.+++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999864
Done!