RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy50
(505 letters)
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 220 bits (562), Expect = 2e-67
Identities = 87/357 (24%), Positives = 153/357 (42%), Gaps = 42/357 (11%)
Query: 111 LAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFVSVDV 170
E+ ALV V S S + K + L+ +K T + +
Sbjct: 13 EEEAIALVEGANY--KVTSIYKLPKSPNVKFYIQYDKLQQIKNDEEIS---TLIIF--EQ 65
Query: 171 LKLHQQKMLQDLFQ-VPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDA 229
LK ++ + V D+ +++++IF HA ++EA++QI +A L Y + +
Sbjct: 66 LKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIK---ET 122
Query: 230 TNMNITKG----------FLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTV 279
+ ++S R KL K L +K +E +R P++
Sbjct: 123 YTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI 182
Query: 280 AVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNI 339
+VGYTN GKT+L +LT V +LF T+ + + NR +I+ VDT+GFI I
Sbjct: 183 GIVGYTNSGKTSLFNSLTGLTQKV-DTKLFTTMSPKRYAIPINNR-KIMLVDTVGFIRGI 240
Query: 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPD--YLQQKQHVDETLQHLELEEKILEHVLV 397
P +++ F VTL +A +D +I V+D + + ++ Q E L+ + + K +LV
Sbjct: 241 PPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGK---PILV 297
Query: 398 VGNKVDAVPPGERVTEEYD--------------LLISATRGTGLAQLKEKVQDMILK 440
NK+D + + + ISA + T L L++K+ + +
Sbjct: 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 4e-12
Identities = 56/360 (15%), Positives = 111/360 (30%), Gaps = 92/360 (25%)
Query: 107 RDFMLAESKALVSSIQGWRVVDSTIISLLSFDKKSFFGKGNLELLKRQVRGDARVTAVFV 166
+D + A V + V D KS K ++ + + V+
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMP---------KSILSKEEIDHI---IMSKDAVSGTLR 66
Query: 167 SVDVLKLHQQKMLQDLFQVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTI 226
L Q++M+Q + + Y ++ K + ++ I + L+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----- 121
Query: 227 EDATNMNITKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTN 286
N K + + L KL++AL +L + V + G
Sbjct: 122 ---DNQVFAKYNVSRLQPYL-----KLRQALLEL-------------RPAKNVLIDGVLG 160
Query: 287 CGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEP 346
GKT + + + + + +I ++ + N P T+LE
Sbjct: 161 SGKTWVALDVCLSYKV---------------QCKMDF--KIFWL-NLKN-CNSPETVLE- 200
Query: 347 FKVTLEDAMLADIIIHVV--DVSNPDYLQQ-KQHVDETLQHLE--LEEKILEHVLVVGNK 401
ML ++ + S D+ K + L L+ K E+ L+V
Sbjct: 201 --------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--- 249
Query: 402 VDAV--PPGERVTEEYDL----LISATRGTGLAQLKEKVQDMILKATGRKNITMRVRSGG 455
+ V + ++L L++ TR + L A +I++ S
Sbjct: 250 LLNVQNA---KAWNAFNLSCKILLT-TRFKQVTD--------FLSAATTTHISLDHHSMT 297
Score = 65.3 bits (158), Expect = 3e-11
Identities = 91/597 (15%), Positives = 162/597 (27%), Gaps = 208/597 (34%)
Query: 5 EFKTIRDEAQTGALGT---DHQVFVIQP-------FIKWGKKMKR-NTTRDFM------- 46
+ K ++D + L DH ++ + W K+ + F+
Sbjct: 34 DCKDVQDMPK-SILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 47 ---LAESKALVKFSDNSQDDLEESDEFKTIRDEAQTGALGTDHQVFVVQPFIKWGKKMKR 103
L + + + RD L D+QVF K
Sbjct: 91 YKFLMS-----PIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFA-----------KY 129
Query: 104 NTTRDFMLAESKALVSSIQ--GWRVVD-------STIIS--LLSFDKKSFFGKG------ 146
N +R + + + ++ ++D + + LS+ +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 147 -----------NLELLKRQVRGDARVTAVFVSVDVLKLHQ-QKMLQDLFQVPVFDRYMIV 194
L+ L Q+ + + S L++H Q L+ L + ++ ++V
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 195 ---------IQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGF-LDSKRM 244
F K L L TR++ + D + T LD M
Sbjct: 250 LLNVQNAKAWNAFNLSCKI-----------L--LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 245 VLMEREQK--LKKALN----KLKGQR------------EMMRNKKQRQKFPTVAVVGYTN 286
L E K L K L+ L + E +R+ + N
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-----WKHVN 351
Query: 287 CGK-TTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI--SNIPTTL 343
C K TT+I++ SL L+ P R ++ F ++IPT L
Sbjct: 352 CDKLTTIIES-----SL-------NVLE--------PAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 344 LEPF--KVTLEDAMLADIIIHVVDVS----NPD---------YLQQKQHVDETLQHLELE 388
L V D M ++ + S P YL+ K ++ L
Sbjct: 392 LSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA---LH 446
Query: 389 EKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMILKATGRKNIT 448
I++H N + + D
Sbjct: 447 RSIVDHY----NIPKTFDSDDLIPPYLDQYF----------------------------- 473
Query: 449 MRVRSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISSRKRG 505
Y + H E T + LD + K +H+ + G
Sbjct: 474 ---------YSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASG 518
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 6e-11
Identities = 95/555 (17%), Positives = 170/555 (30%), Gaps = 196/555 (35%)
Query: 42 TRDFMLAE------SKALVKFSDNSQDDLEESDE---------FKTIRDEAQTGALGTDH 86
T F +A +K L + ++ D E + + + + +G
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY--VSSLVEPSKVGQFD 81
Query: 87 QV--FVVQPFIKWGKKMKRNTTRDFM-------LAESKALVSSIQGWRVVDSTII----S 133
QV + F ++ LA L+ V +I +
Sbjct: 82 QVLNLCLTEF-----------ENCYLEGNDIHALAAK--LLQENDTTLVKTKELIKNYIT 128
Query: 134 LLSFDKKSFFGKGNLELLKRQVRGDARVTAVF----VSVDVLKLHQQKMLQDLFQVPVFD 189
K+ F K N L + G+A++ A+F + D + L+DL+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDLY-----Q 178
Query: 190 RYM-IVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGFLDSKRMVLME 248
Y +V + K A+T L RT DA + T+G + L
Sbjct: 179 TYHVLVGDLIKFSAET--------------LSELIRTTLDAEKV-FTQGL-NILE-WLEN 221
Query: 249 REQK-----LKKA-----LN------------KLKGQR-EMMRNKKQRQKFPTVAVVGYT 285
L L KL G +R+ + G T
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK----------GAT 271
Query: 286 NCGK---TTLIKALTDD-DSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN--I 339
+ T + A TD +S F + +L+ IG
Sbjct: 272 GHSQGLVTAVAIAETDSWES-------FFVSVRKA--------ITVLFF--IGVRCYEAY 314
Query: 340 PTTLLEPFKVTLEDA----------MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEE 389
P T L P LED+ ML+ +SN Q + +V++T HL +
Sbjct: 315 PNTSLPP--SILEDSLENNEGVPSPMLS--------ISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 390 KI---L----EHVLVVGN------------KVDA--------VPPGER---VTEEYDLLI 419
++ L ++++V G K A +P ER + + L +
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPV 423
Query: 420 SA---TRGTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAV-SNIREDDT 475
++ + L D+I K + N++ + Q + T S++R
Sbjct: 424 ASPFHS------HLLVPASDLINKDLVKNNVSFN----AKDIQIPVYDTFDGSDLRVLSG 473
Query: 476 SAEHLLLDVVMTDVI 490
S ++D ++ +
Sbjct: 474 SISERIVDCIIRLPV 488
Score = 51.2 bits (122), Expect = 8e-07
Identities = 83/519 (15%), Positives = 149/519 (28%), Gaps = 176/519 (33%)
Query: 7 KTIRDEAQTGAL-GTD-HQVFVIQPFIKWGKKMKRNTT-RDFMLAESKALVKFSDNSQDD 63
E + L G D H + +K ++++ A A F S
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 64 LEESDEFKTIRDEAQTGALGTDHQVFVV---QPFIKWGKKMKRNTTRDFM--LAE----S 114
L + G + Q+ + Q G T D+ L +
Sbjct: 145 LFRA---------VGEG----NAQLVAIFGGQ-----G------NTDDYFEELRDLYQTY 180
Query: 115 KALVSSIQGWRVVDSTIISLLS--FDKKSFFGKG-NLE--LLKRQVRGDARVTA-VFVSV 168
LV + + T+ L+ D + F +G N+ L D + +S
Sbjct: 181 HVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 169 DVLKLHQQKMLQDLFQVPVFDRYM--------------------IVIQIFKAHAKTREAR 208
++ + Q L V + + +V + A + E+
Sbjct: 239 PLIGVIQ------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 209 LQIAIAELPYL-WTRYRTIEDATNMNITKGFL-DSKR--------MVL---MEREQKLKK 255
+ L + R E N ++ L DS M+ + +EQ ++
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-VQD 351
Query: 256 ALNKLKGQREMMRNKKQRQKFPT-----VAVV-GYTN---CG--------KTTL--IKAL 296
+NK P +++V G N G TL KA
Sbjct: 352 YVNKT------------NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 297 TDDD-SLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF--ISNIP--TTLLEP-FKVT 350
+ D S +P ++ R L F ++ P + LL P +
Sbjct: 400 SGLDQSRIPFSE------------------RKLKFSN-RFLPVA-SPFHSHLLVPASDLI 439
Query: 351 LEDAMLADIIIHVVDVSNPDYLQQKQHVD--ETLQHL--ELEEKILE------------- 393
+D + ++ + D+ P Y L+ L + E+I++
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVY-----DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 394 -----HVLVVGNKVDAVPPGERVTEEYDLLISATRGTGL 427
H+L G PG + L GTG+
Sbjct: 495 QFKATHILDFG-------PG-GASGLGVLTHRNKDGTGV 525
Score = 29.6 bits (66), Expect = 3.1
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 64/172 (37%)
Query: 339 IPTTLL-------EPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391
+PT E F L + + DE EL K
Sbjct: 22 VPTASFFIASQLQEQFNKILPEP--------------TEGFAAD---DEPTTPAELVGKF 64
Query: 392 LEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITMRV 451
L +V V P + ++D +++ L E ++ L+ +I
Sbjct: 65 LGYV------SSLVEPSK--VGQFDQVLNLC-------LTE-FENCYLEG---NDI---- 101
Query: 452 RSGGSEYQWLMKHTAVSNIREDDTSAEHLLLDVVMTDVIMNKFKHEFISSRK 503
H + + +++ + V ++I N ++ R
Sbjct: 102 ------------HALAAKLLQENDTTL-----VKTKELIKNYITARIMAKRP 136
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 58.9 bits (143), Expect = 2e-10
Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 51/204 (25%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD---VTTHEGMLPNRLRILY---- 329
T+ G +N GK+TLI LT + VT R I
Sbjct: 2 ATIIFAGRSNVGKSTLIYRLT--------GKKVRRGKRPGVT--------RKIIEIEWKN 45
Query: 330 ---VDT--IGFISNIPTTLLEPFKVTLEDAML-----ADIIIHVVDV-SNPDYLQQKQHV 378
+D GF+ +P + E K + + D+ + VVD + P+ +++ +
Sbjct: 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKR 105
Query: 379 DETLQHLELEEKILEH---VLVVGNKVDAVPPGERVTEEYDL--------------LISA 421
E +E + + E +V NK+D + + V ISA
Sbjct: 106 GEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISA 165
Query: 422 TRGTGLAQLKEKVQDMILKATGRK 445
G + +LK ++ ++I + GR+
Sbjct: 166 KFGDNIERLKNRIFEVIRERQGRR 189
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 58.6 bits (142), Expect = 6e-10
Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 28/197 (14%)
Query: 264 REMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP- 322
T+ + G N GK++ + ++ + V ++ F T ++ + G
Sbjct: 17 LYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDV-QSYSFTTKNL--YVGHFDH 73
Query: 323 NRLRILYVDTIGFISNIPTTLLEPFKVTLEDAM--LADIIIHVVDVSNPDYLQQKQHVDE 380
+ +DT G + ++T A+ + +I+ ++D+S L K+ ++
Sbjct: 74 KLNKYQIIDTPGLLDR-AFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINL 132
Query: 381 TLQHL--ELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL---------------ISATR 423
+ K +++ NK+D + L+ S
Sbjct: 133 -FYSIKSVFSNKS---IVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188
Query: 424 GTGLAQLKEKVQDMILK 440
G G+ Q K +++
Sbjct: 189 GVGVEQAKITACELLKN 205
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 55.8 bits (135), Expect = 2e-08
Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 36/206 (17%)
Query: 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDD----SLVP- 304
+ + + L+ R + V G N GK++ + AL + S
Sbjct: 8 SGLVPRGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAG 67
Query: 305 --RNQLFATLDVTTHEGMLPNRLRILYVDTIGF--ISNIPTTLLEPFKVTLEDAMLADII 360
+ ++ ++++ + P + VDT G + + +E + AD
Sbjct: 68 TTTDPVYKSMEL---HPIGP----VTLVDTPGLDDVGELGRLRVEKARRVFYR---ADCG 117
Query: 361 IHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYD---- 416
I V D + Y ++ + +L E +I +VV NK+D + +
Sbjct: 118 ILVTDSAPTPY-------EDDVVNLFKEMEI--PFVVVVNKIDVLGEKAEELKGLYESRY 168
Query: 417 ----LLISATRGTGLAQLKEKVQDMI 438
LL+SA + G + + + +++
Sbjct: 169 EAKVLLVSALQKKGFDDIGKTISEIL 194
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 54.9 bits (132), Expect = 2e-08
Identities = 58/277 (20%), Positives = 110/277 (39%), Gaps = 31/277 (11%)
Query: 184 QVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRY-RTIEDATNMNITKGFLDS- 241
+P F + ++ + + + A + AI + L RY I + + N
Sbjct: 73 TLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQF 132
Query: 242 -KRMVLMEREQKLKKALNKLKGQREMMRNKKQ-RQKFPTVAVVGYTNCGKTTLIKALTDD 299
R+ + R + L L RE++++ + PTV + G+ N GK+TL+KALT
Sbjct: 133 YGRVASVLR--DIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTA 190
Query: 300 DSLVPRNQLFATLDVTTHEGMLP-NRLRILYVDTIGFI----SNIPTTLLEPFKVTLEDA 354
+ + F T + + G R +DT G + S +
Sbjct: 191 KPEI-ASYPFTTRGI--NVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRY-- 245
Query: 355 MLADIIIHVVDVSNPDYLQQKQHVDETLQHL--ELEEKILEHVLVVGNKVDAVPPG--ER 410
L ++II++ D S ++ + + + E ++ LVV NK+D +R
Sbjct: 246 -LGNLIIYIFDPSEHCGFPLEEQIHL-FEEVHGEFKDL---PFLVVINKIDVADEENIKR 300
Query: 411 VTEEYD------LLISATRGTGLAQLKEKVQDMILKA 441
+ + + ISA +GTG+ +KE++ +
Sbjct: 301 LEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 51.4 bits (124), Expect = 6e-08
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYD 416
AD ++ +VD + D + + E + L + + VV NK D ++E
Sbjct: 84 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP----ITVVRNKADITGETLGMSEVNG 139
Query: 417 ---LLISATRGTGLAQLKEKVQDMI 438
+ +SA G G+ L+ ++ +
Sbjct: 140 HALIRLSARTGEGVDVLRNHLKQSM 164
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 51.5 bits (124), Expect = 2e-07
Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 49/193 (25%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA-----TLDVTTHEGMLPNRLRILYVDT 332
+A++G N GKT+L +T NQ T V G++ + D
Sbjct: 5 EIALIGNPNSGKTSLFNLITG------HNQRVGNWPGVT--VERKSGLVKKNKDLEIQDL 56
Query: 333 IGFISNIPTTLLEPFKVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVDETLQHLE 386
G S P + KV D +L AD I++VVD +N + YL T Q +E
Sbjct: 57 PGIYSMSPYSPEA--KVAR-DYLLSQRADSILNVVDATNLERNLYL--------TTQLIE 105
Query: 387 LEEKILEHVLVVGNKVDAVPPGERVTEEYDL------------LISATRGTGLAQLKEKV 434
V + N +D + + ++ ++ SA + TG+ Q+ +K
Sbjct: 106 TGIP----VTIALNMIDVL---DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
Query: 435 QDMILKATGRKNI 447
G
Sbjct: 159 AHTTTSTVGDLAF 171
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 49.0 bits (118), Expect = 3e-07
Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 39/176 (22%)
Query: 277 PTVAVVGYTNCGKTTLI-------KALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY 329
V +VG N GK++L A+ D V R+ ++ +L
Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLL-------- 53
Query: 330 VDTIGFISNIPTTLLEPFKVTLEDAM-LADIIIHVVDVSNPDYLQQKQHV---DETL-QH 384
VDT G S + + ++ A+ A++++ VD + + D + ++
Sbjct: 54 VDTGGLWSG--DKWEKKIQEKVDRALEDAEVVLFAVDG--------RAELTQADYEVAEY 103
Query: 385 LELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQLKEKV 434
L + K V++V KVD + Y L S+ GL +L E +
Sbjct: 104 LRRKGK---PVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 50.1 bits (121), Expect = 6e-07
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 44/182 (24%)
Query: 279 VAVVGYTNCGKTTLIKAL-------TDDDSLVP---RNQLFATLDVTTHEGMLPNRLRIL 328
VA+VG N GK+TL+ L S P R +L + T +I+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPI---SPRPQTTRKRLRG---ILTEGRR-----QIV 58
Query: 329 YVDTIGFISNIPTTLLEPF-----KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQ 383
+VDT G P L F L D + ++ VVD+ +P + + V L+
Sbjct: 59 FVDTPGLHK--PMDALGEFMDQEVYEALADV---NAVVWVVDLRHP-PTPEDELVARALK 112
Query: 384 HLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL--------ISATRGTGLAQLKEKVQ 435
L + +L+VGNK+DA E + Y L +SA +A+LK +
Sbjct: 113 PLVGKVP----ILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 168
Query: 436 DM 437
+
Sbjct: 169 AL 170
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 48.6 bits (116), Expect = 8e-07
Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 24/196 (12%)
Query: 269 NKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL--FATLDVTTHEGMLPNRLR 326
N R+ + G GKTT +K + + ++ AT D T L
Sbjct: 7 NFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTL-FFDFLPLD 65
Query: 327 ILYVDTIGFISNIPTT----LLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDET 381
I V ++ T K+ L D I+ V D + + +
Sbjct: 66 IGEVKGFKTRFHLYTVPGQVFYNASRKLILRG---VDGIVFVADSAPNRLRANAESMRNM 122
Query: 382 LQHLELEEKILEHV--LVVGNKVD---AVPPGERVTEEYDL-------LISATRGTGLAQ 429
++L L+ V ++ NK D A+P V D AT G G+ +
Sbjct: 123 RENLAEYGLTLDDVPIVIQVNKRDLPDALPVEM-VRAVVDPEGKFPVLEAVATEGKGVFE 181
Query: 430 LKEKVQDMILKATGRK 445
++V ++L
Sbjct: 182 TLKEVSRLVLARVAGG 197
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 47.9 bits (115), Expect = 8e-07
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 42/181 (23%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQL---FATLDVTTHEGML-PNRLRILYVDTI 333
+A++G N GK+T+ ALT N + + V EG N + VD
Sbjct: 5 EIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLP 58
Query: 334 GFISNIPTTLLEPFKVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVDETLQHLEL 387
G S ++ E + D ++ D+++++VD + + YL TLQ +E+
Sbjct: 59 GVYSLTANSIDE--IIA-RDYIINEKPDLVVNIVDATALERNLYL--------TLQLMEM 107
Query: 388 EEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDM 437
+L+ NK+D + + D L +SA + G+ +LK+ +
Sbjct: 108 GAN----LLLALNKMDLAK-SLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162
Query: 438 I 438
+
Sbjct: 163 V 163
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 49.6 bits (118), Expect = 1e-06
Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
+ ++G + GK+++ + + S +L AT+DV + + D G
Sbjct: 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGG-- 61
Query: 337 SNIPTTLLEPFKVTLEDAML--ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394
+E + +D + ++IHV DV + + L+ + + L+ L
Sbjct: 62 ---QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-K 117
Query: 395 VLVVGNKVDAVPPGER 410
+ V+ +K+D V +R
Sbjct: 118 IFVLLHKMDLVQLDKR 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 49.1 bits (117), Expect = 1e-06
Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 13/229 (5%)
Query: 246 LMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPR 305
+ ++ L + + K++ TV V+G GK++ + +L + +
Sbjct: 11 FQQFPAATQEKLIEF-----FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS 65
Query: 306 NQLFATLDVTTHEGMLPNRLRILYVDTIGF--ISNIPTTLLEPFKVTLEDAMLADIIIHV 363
L + I +DT G + LE K L D++++V
Sbjct: 66 PFQAEGLRPVMVSRTMGGF-TINIIDTPGLVEAGYVNHQALELIKGFLV-NRTIDVLLYV 123
Query: 364 VDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATR 423
+ + + V + ++I L+V PP E E + S
Sbjct: 124 DRLDVYAVDELDKQVVIAITQT-FGKEIWCKTLLVLTHAQFSPPDELSYETF---SSKRS 179
Query: 424 GTGLAQLKEKVQDMILKATGRKNITMRVRSGGSEYQWLMKHTAVSNIRE 472
+ L ++ + + + + G + A+ N
Sbjct: 180 DSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEA 228
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 47.9 bits (115), Expect = 1e-06
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 42/188 (22%)
Query: 271 KQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL---FATLDVTTHEGMLP-NRLR 326
K +A++G N GK+T+ ALT N + + V EG N +
Sbjct: 2 GSHMKSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEK 55
Query: 327 ILYVDTIGFISNIPTTLLEPFKVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVDE 380
VD G S ++ E + D ++ D+++++VD + + YL
Sbjct: 56 FKVVDLPGVYSLTANSIDE--IIAR-DYIINEKPDLVVNIVDATALERNLYL-------- 104
Query: 381 TLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQL 430
TLQ +E+ +L+ NK+D + + D L +SA + G+ +L
Sbjct: 105 TLQLMEMGAN----LLLALNKMDLAK-SLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 159
Query: 431 KEKVQDMI 438
K+ + +
Sbjct: 160 KKAISIAV 167
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 48.5 bits (116), Expect = 2e-06
Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 49/197 (24%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA-----TLDVTTHEGMLPNR-LRILYVD 331
TVA+VG N GKTT+ ALT Q T V EG++ R L VD
Sbjct: 5 TVALVGNPNVGKTTIFNALTG------LRQHVGNWPGVT--VEKKEGIMEYREKEFLVVD 56
Query: 332 TIGFISNIPTTLLEPFKVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVDETLQHL 385
G S ++ E + + +L AD+I+ +VD + +L TL+
Sbjct: 57 LPGIYSLTAHSIDE--LIAR-NFILDGNADVIVDIVDSTCLMRNLFL--------TLELF 105
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------------LISATRGTGLAQLKEK 433
E+E K ++++V NK D + ++ + D+ +A +G G+ +LK
Sbjct: 106 EMEVK---NIILVLNKFDLL---KKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRM 159
Query: 434 VQDMILKATGRKNITMR 450
+ M I R
Sbjct: 160 IALMAEGKVTTNPIIPR 176
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 49.1 bits (118), Expect = 2e-06
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYD 416
AD+I++++D+ + + E L V NK+D + +
Sbjct: 313 ADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADALIRAIA 367
Query: 417 -------LLISATRGTGLAQLKEKVQDMILK 440
+ ISA G G+ LK+ + D++
Sbjct: 368 DGTGTEVIGISALNGDGIDTLKQHMGDLVKN 398
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 47.7 bits (114), Expect = 3e-06
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 42/193 (21%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQL---FATLDVTTHEGMLPNR-LRILYVDTI 333
VA+ G N GKT+L ALT Q + + V EG+ + I +D
Sbjct: 7 KVALAGCPNVGKTSLFNALTG------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLP 60
Query: 334 GFISNIPTTLLEPFKVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVDETLQHLEL 387
G S +++ E K+ D +L AD++I V D NP+ YL L+ LE+
Sbjct: 61 GTYSLGYSSIDE--KIA-RDYLLKGDADLVILVADSVNPEQSLYL--------LLEILEM 109
Query: 388 EEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDM 437
E+K V++ +D + + L S+ G GL +LKEK+ +
Sbjct: 110 EKK----VILAMTAIDEAK-KTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164
Query: 438 ILKATGRKNITMR 450
K T + +
Sbjct: 165 AQKNTILHRMILD 177
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 47.9 bits (115), Expect = 5e-06
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 39/178 (21%)
Query: 277 PTVAVVGYTNCGKTTLI-------KALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY 329
TV +VG N GK+TL KA+ +D+ V R+ + T++ L
Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKL-------- 53
Query: 330 VDTIGFISNIPTTLLEPFKVTLEDAM-LADIIIHVVDVS---NPDYLQQKQHVDETL-QH 384
VDT G N + + K + + AD+++ VVD + DE+L
Sbjct: 54 VDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKE--------DESLADF 105
Query: 385 LELEEKILEHVLVVGNKVDAVPPGER--VTEEYDL------LISATRGTGLAQLKEKV 434
L ++V NK + + ER E Y L +SA L + E +
Sbjct: 106 LRKSTV---DTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 46.7 bits (112), Expect = 9e-06
Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 59/202 (29%)
Query: 267 MRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDD----SLVP---RNQLFATLDVTTHEG 319
M K F +A+VG N GK+TL+ L S R+++ + T
Sbjct: 1 MSIDKSYCGF--IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVG---IHTEGA 55
Query: 320 MLPNRLRILYVDTIGFISNIPTTLLEPFKV-----TLEDAMLADIIIHVVDVSNPDYLQQ 374
+ +YVDT G + ++ D +++I VV+ +
Sbjct: 56 Y-----QAIYVDTPGLHME-EKRAINRLMNKAASSSIGDV---ELVIFVVEGTRWT---- 102
Query: 375 KQHVDETLQHLELEEKILEH-------VLVVGNKVDAVPPGERVTEEYDLL--------- 418
+E +L V++ NKVD V + L
Sbjct: 103 -----------PDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDI 151
Query: 419 --ISATRGTGLAQLKEKVQDMI 438
ISA G + + V+ +
Sbjct: 152 VPISAETGLNVDTIAAIVRKHL 173
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 46.3 bits (111), Expect = 1e-05
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 54/184 (29%)
Query: 277 PTVAVVGYTNCGKTTLI-------KALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILY 329
P VA+VG N GK+T+ ++ +D V R++++++ + ++ L
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNL-------- 55
Query: 330 VDTIGFISNIPTTLLEPFKVTLEDAM---------LADIIIHVVDVS---NPDYLQQKQH 377
+DT G + + AD+II +V+
Sbjct: 56 IDTGGI---------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA------- 99
Query: 378 VDETL-QHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDL------LISATRGTGLAQL 430
DE + + L +K V++ NK+D + + Y L IS T G GL L
Sbjct: 100 -DEEVAKILYRTKK---PVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDL 155
Query: 431 KEKV 434
+ V
Sbjct: 156 LDAV 159
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 46.2 bits (109), Expect = 1e-05
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 27/197 (13%)
Query: 249 REQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL 308
R ++ + + + + + VAV G T GK++ I L +
Sbjct: 47 RAGNIQLTNSAISDALKEIDSSV-----LNVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101
Query: 309 FATLDVTTHEGM--LPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAML--ADIIIHVV 364
++VT PN +++ D G + P LE D I +
Sbjct: 102 TGVVEVTMERHPYKHPNIPNVVFWDLPGI-----GSTNFPPDTYLEKMKFYEYDFFIIIS 156
Query: 365 DVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRG 424
+ + D + K V KVD+ E E
Sbjct: 157 A-------TRFKKNDIDIAKAISMMKK--EFYFVRTKVDSDITNEADGEPQTFDKEKV-- 205
Query: 425 TGLAQLKEKVQDMILKA 441
L ++ + +
Sbjct: 206 --LQDIRLNCVNTFREN 220
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 46.4 bits (111), Expect = 2e-05
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 28/110 (25%)
Query: 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE-----HVLVVGNKVDAVP----- 406
ADI++ V+D S+P E + KILE LVV NKVD V
Sbjct: 324 ADIVLFVLDASSPL--------------DEEDRKILERIKNKRYLVVINKVDVVEKINEE 369
Query: 407 --PGERVTEEYDLLISATRGTGLAQLKEKVQDMILKATGRKNITM--RVR 452
+ T+ + + ISA +G GL +L+E + + R + ++ +R
Sbjct: 370 EIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLR 419
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 44.6 bits (105), Expect = 2e-05
Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 7/143 (4%)
Query: 269 NKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRIL 328
N + P + ++G GK+++ K + S L +T + + + +
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72
Query: 329 YVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELE 388
D G +P +I+V+D + DY++ + T+
Sbjct: 73 IWDFPG-----QMDFFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKV 126
Query: 389 EKILEHVLVVGNKVDAVPPGERV 411
+ + V +KVD + ++
Sbjct: 127 NPDM-NFEVFIHKVDGLSDDHKI 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 46.0 bits (110), Expect = 2e-05
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 25/95 (26%)
Query: 357 ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE-----HVLVVGNKVDAVPPGERV 411
AD+++ +D + +++I E +++V NK+D V
Sbjct: 304 ADLVLLTIDAATGW--------------TTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT 349
Query: 412 TEEYD------LLISATRGTGLAQLKEKVQDMILK 440
+ EY + +A + G+ L+ + +++
Sbjct: 350 SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 43.6 bits (103), Expect = 5e-05
Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 51/162 (31%)
Query: 271 KQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYV 330
KQ+ P++ + G N GKT+L+ LT D
Sbjct: 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDS----------------------------VR 38
Query: 331 DTIGFISNIPTTLLEPFKVTLED------------------AMLADIIIHVVDVSN-PDY 371
T+ + + VTL D A +I +VD + P
Sbjct: 39 PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK 98
Query: 372 LQQ-KQHVDETLQHLELEEKILEHVLVVGNKVD---AVPPGE 409
L + + + L E + +L+ NK + A PP +
Sbjct: 99 LTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK 140
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 44.0 bits (105), Expect = 6e-05
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 46/185 (24%)
Query: 279 VAVVGYTNCGKTTLIKAL-------TDDDSLVP---RNQLFATLDVTTHEGMLPNRLRIL 328
VA+VG N GK+TL+ L S R ++ PN +I+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSII---SPKAGTTRMRVLGV--KNI-----PNEAQII 62
Query: 329 YVDTIGFISNIPTTLLEPF-----KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQ 383
++DT G + +L K +LE+A D+I+ ++D + + ++ ++
Sbjct: 63 FLDTPGIYEPKKSDVLGHSMVEIAKQSLEEA---DVILFMIDATEGWRPRDEEIYQNFIK 119
Query: 384 HLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL------------ISATRGTGLAQLK 431
L V+VV NK+D + P + V D + ISA +G L +L
Sbjct: 120 PLNK------PVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173
Query: 432 EKVQD 436
+ +
Sbjct: 174 KTILK 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 42.8 bits (101), Expect = 6e-05
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 27/153 (17%)
Query: 268 RNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR--- 324
+ P++ + G N GKT+L+ LT D T P
Sbjct: 40 GSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV------------RPTVVSQEPLSAAD 87
Query: 325 ---LRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSN-PDYLQQ-KQHVD 379
+ VD G + + L + K + +I +VD + P L + +
Sbjct: 88 YDGSGVTLVDFPGHVK-LRYKLSDYLKTRAKF---VKGLIFMVDSTVDPKKLTTTAEFLV 143
Query: 380 ETLQHLELEEKILEHVLVVGNKVD---AVPPGE 409
+ L E + +L+ NK + A PP +
Sbjct: 144 DILSITESSCENGIDILIACNKSELFTARPPSK 176
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 43.6 bits (102), Expect = 1e-04
Identities = 35/178 (19%), Positives = 54/178 (30%), Gaps = 49/178 (27%)
Query: 277 PTVAVVGYTNCGKTTLIKAL--------------TDD----------DSLVPRNQLFATL 312
P V V G + GKT+ I+ L T D + VP N L
Sbjct: 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDP 125
Query: 313 D-----VTTHEGMLPNRLRILY-----------VDTIGFISNIPTTLLEPF---KVTLED 353
+ + NR +DT G +S + + V
Sbjct: 126 EKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWF 185
Query: 354 AMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERV 411
A D+II + D + DE + + + + VV NK D V + +
Sbjct: 186 AERVDLIILLFDAHKLEI------SDEFSEAIGALRGHEDKIRVVLNKADMVETQQLM 237
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 42.7 bits (101), Expect = 1e-04
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 50/186 (26%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA-----TLDVTTHEGMLP-NRLRILYVD 331
++G NCGKTTL ALT+ NQ T V G I D
Sbjct: 3 HALLIGNPNCGKTTLFNALTN------ANQRVGNWPGVT--VEKKTGEFLLGEHLIEITD 54
Query: 332 TIG----FISNIPTTLLEPFKVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVDET 381
G + + E ++ +++ D II+V+D + + YL T
Sbjct: 55 LPGVYSLVANAEGISQDE--QIAA-QSVIDLEYDCIINVIDACHLERHLYL--------T 103
Query: 382 LQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLK 431
Q EL + V+V N +D ++ + + L I A + G+ L+
Sbjct: 104 SQLFELGKP----VVVALNMMDIAE-HRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQ 158
Query: 432 EKVQDM 437
+ +
Sbjct: 159 QSLLHC 164
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 42.6 bits (100), Expect = 2e-04
Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 17/184 (9%)
Query: 265 EMMRNKKQRQKFP-TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPN 323
E++ N KQ T+ V+G GK++ + ++ + +
Sbjct: 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG 86
Query: 324 RLRILYVDTIGFI--SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDET 381
+ +DT G I I L K L D D++++V + + V +
Sbjct: 87 F-TLNIIDTPGLIEGGYINDMALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKA 144
Query: 382 LQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMILKA 441
+ + I +V PP +E+ ++ E + ++
Sbjct: 145 ITDS-FGKGIWNKAIVALTHAQFSPPDGLPYDEF-----------FSKRSEALLQVVRSG 192
Query: 442 TGRK 445
K
Sbjct: 193 ASLK 196
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 40.3 bits (95), Expect = 4e-04
Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 71/218 (32%)
Query: 252 KLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT 311
LK+ L L R++ V ++G N GKT+++ L D
Sbjct: 9 SLKQTLGLLPADRKI-----------RVLMLGLDNAGKTSILYRLHLGDV---------- 47
Query: 312 LDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDA--------------MLA 357
VTT V T+G N+ T + + D
Sbjct: 48 --VTT-------------VPTVGV--NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDT 90
Query: 358 DIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLVVGNKVD---AVPPGERVTE 413
D +I+VVD ++ D + K + L EL + +L L+ NK D A E + E
Sbjct: 91 DAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLL---LIFANKQDLPDAASEAE-IAE 146
Query: 414 EYDL-----------LISATRGTGLAQLKEKVQDMILK 440
+ + S+ G GL + + + + + +
Sbjct: 147 QLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 40.4 bits (94), Expect = 0.001
Identities = 19/137 (13%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISNIP 340
++G CGK+++ K + + + L +T + + L ++ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63
Query: 341 TTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGN 400
FK +++V+D + Y+ ++ +++ + ++ V+ +
Sbjct: 64 YDSERLFK-------SVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSI-NIEVLIH 114
Query: 401 KVDAVPPGERVTEEYDL 417
KVD + +V + D+
Sbjct: 115 KVDGLSEDFKVDAQRDI 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 40.2 bits (95), Expect = 0.001
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 24/95 (25%)
Query: 359 IIIHVVDVS-NP--DYLQQKQHVDETLQHLELE---EKILE-HVLVVGNKVDAVPP--GE 409
++++V+D + P ETL+ E+ +L LV NKVD + +
Sbjct: 238 VLLYVLDAADEPLKTL--------ETLRK-EVGAYDPALLRRPSLVALNKVDLLEEEAVK 288
Query: 410 RVTEEYD------LLISATRGTGLAQLKEKVQDMI 438
+ + L +SA G GL LKE + ++
Sbjct: 289 ALADALAREGLAVLPVSALTGAGLPALKEALHALV 323
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 39.0 bits (91), Expect = 0.002
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 36/170 (21%)
Query: 271 KQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYV 330
++ V VG + GKT L L T + +
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQY------------RDTQTSITDSSAIYKVN 49
Query: 331 DTIGFI---------SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDET 381
+ G ++ LL+ FK + A ++ VVD + + ++ + V E
Sbjct: 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSS------ARAVVFVVDSA--AFQREVKDVAEF 101
Query: 382 LQHLELEEKILEH---VLVVGNKVD---AVPPGERVTEEYDLLISATRGT 425
L + ++ L++ +L+ NK D A + ++ + ++ R T
Sbjct: 102 LYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRVT 150
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 39.1 bits (92), Expect = 0.002
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 359 IIIHVVDVSNP---DYLQQKQHVDETLQH--LELEEKILEHVLVVGNKVDAVPPGER--- 410
+I+HV+D+S D +++ L L L E+ ++V NK+D E
Sbjct: 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTER---PQIIVANKMDMPEAAENLEA 295
Query: 411 VTEEYD-----LLISATRGTGLAQLKEKVQDMI 438
E+ ISA GL +L +V + +
Sbjct: 296 FKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 37.3 bits (86), Expect = 0.007
Identities = 26/201 (12%), Positives = 61/201 (30%), Gaps = 26/201 (12%)
Query: 253 LKKALNKLKGQREMMRNKKQRQKFP-----TVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
+ + G+ + ++ P + +VG T GK+ ++
Sbjct: 1 MHHHHHHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60
Query: 308 LF-ATLDVTTHEGMLPNRLRILYVDTIGFISNIPT---TLLEPFKVTLEDAMLADIIIHV 363
T ++ VDT G T E + L + ++ V
Sbjct: 61 AKSITKKCEKRSSSWKET-ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLV 119
Query: 364 VDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATR 423
V + +++ E + + E+ ++++ + D + +Y
Sbjct: 120 VPLGRYT--EEEHKATEKILKM-FGERARSFMILIFTRKDDLGDTNL--HDY-------- 166
Query: 424 GTGLAQLKEKVQDMILKATGR 444
L + E +QD++ R
Sbjct: 167 ---LREAPEDIQDLMDIFGDR 184
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 37.3 bits (87), Expect = 0.007
Identities = 48/188 (25%), Positives = 71/188 (37%), Gaps = 54/188 (28%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQL---------FATLDVTTHEGML-PNRLRI 327
T+ ++G N GKTTL NQL +A + V EG ++
Sbjct: 5 TIGLIGNPNSGKTTLF------------NQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
Query: 328 LYVDTIGFISNIPTTLLEPF--KVTLEDAML---ADIIIHVVDVSNPD---YLQQKQHVD 379
VD G S + ++ +L AD++I+VVD SN + YL
Sbjct: 53 TLVDLPGTYSLTTISSQTSLDEQIAC-HYILSGDADLLINVVDASNLERNLYL------- 104
Query: 380 ETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQ 429
TLQ LEL +V N +D + + E D L + +TRG G+
Sbjct: 105 -TLQLLELGIP----CIVALNMLDIAE-KQNIRIEIDALSARLGCPVIPLVSTRGRGIEA 158
Query: 430 LKEKVQDM 437
LK +
Sbjct: 159 LKLAIDRY 166
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 36.9 bits (85), Expect = 0.011
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 322 PNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL---QQKQHV 378
+L D +G + + K+ + D + +DVS Q + V
Sbjct: 134 AEKLMYFCTDQLGLEQDFEQKQMPDGKLLV------DGFLLGIDVSRGMNRNFDDQLKFV 187
Query: 379 DETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRG 424
L +K ++VV K D ER + + +
Sbjct: 188 SNLYNQLAKTKKP---IVVVLTKCDE--GVERYIRDAHTFALSKKN 228
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 36.7 bits (84), Expect = 0.014
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 267 MRNKKQRQKFP-TVAVVGYTNCGKTTLIKAL------TDDDSLVPRNQLFATLDVTTH-- 317
+ K ++ F T+ VVG + GK+TLI +L + ++ T+ +
Sbjct: 8 VHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTV 67
Query: 318 ---EGMLPNRLRILYVDTIGFISNI 339
E + RL + VDT G+ I
Sbjct: 68 EIEERGVKLRLTV--VDTPGYGDAI 90
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 35.9 bits (82), Expect = 0.019
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 24/112 (21%)
Query: 278 TVAVVGYTNCGKTTLIKAL-----TDDDSLVPRNQLFATLDVTTH-----EGMLPNRLRI 327
T+ VVG + GK+TLI +L + P +++ T+ V EG + L I
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 69
Query: 328 LYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVD 379
VDT GF + +++ +I +D DYL + V+
Sbjct: 70 --VDTPGFGDAV------------DNSNCWQPVIDYIDSKFEDYLNAESRVN 107
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 36.7 bits (85), Expect = 0.021
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 279 VAVVGYTNCGKTT----LIKALTDDDSL-----------VPRNQLFATLDVTTHE---GM 320
+ +VG CGKT +I A+ D + + L+ ++ T E G+
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGL 985
Query: 321 LPNRLRILYVDTIGFISNIP 340
+ LR + D G N
Sbjct: 986 FTSILRRVNDDITGTFKNSR 1005
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 35.0 bits (80), Expect = 0.024
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM 320
+++VG ++ GKTTLI + L R A + H
Sbjct: 3 LILSIVGTSDSGKTTLITRMM--PILRERGLRVAVVKRHAHGDF 44
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 36.3 bits (83), Expect = 0.024
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 267 MRNKKQRQKFP-TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA-TLDVTTHEGMLPN- 323
+ NK Q F + VG T GK+TL+ L + + + ++ L
Sbjct: 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQES 91
Query: 324 --RLRILYVDTIGFISNI 339
RL++ V T+GF I
Sbjct: 92 NVRLKLTIVSTVGFGDQI 109
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 35.7 bits (82), Expect = 0.028
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 259 KLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQL--FATLDVTT 316
K +G E+ + + V VVG TN GK+T I + + S N + T
Sbjct: 143 KGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202
Query: 317 HEGMLPNRLRILYVDTIGFI-SNIPTTLLEPFKV 349
+P DT G I + + +
Sbjct: 203 DLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSL 236
Score = 34.2 bits (78), Expect = 0.10
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 27/119 (22%)
Query: 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE-H 394
I ++ T + ++ +++ +VD+ + L +
Sbjct: 49 IQDVSLTDDDFLRILNGIGKSDALVVKIVDIFDF----------NGSWLPGLHRFVGNNK 98
Query: 395 VLVVGNKVDAVPPG----------ERVTEEYDL------LISATRGTGLAQLKEKVQDM 437
VL+VGNK D +P ++ L LISA +G G+A+L + ++
Sbjct: 99 VLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 35.4 bits (81), Expect = 0.029
Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF-ATLDVTTHEGMLPNRLRILYVDTIGFI 336
+ +VG T GK+ ++ + + T + +G NR I+ +DT
Sbjct: 24 RIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR-EIVIIDTPDMF 82
Query: 337 SNIPT---TLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE 393
S E + L A +++ V + Q Q + ++ + E +
Sbjct: 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEI-FGEDAMG 139
Query: 394 HVLVVGNKVDAVPPG 408
H +V+ + + G
Sbjct: 140 HTIVLFTHKEDLNGG 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 35.1 bits (81), Expect = 0.050
Identities = 40/197 (20%), Positives = 62/197 (31%), Gaps = 68/197 (34%)
Query: 288 GKTTLIKALTDDDSLVPRNQLFATLDV------------TTH-EGMLPNRLRILYVDTIG 334
GKTTL K LT+ S + D L N RI VD G
Sbjct: 31 GKTTLSKVLTEIAS-------TSAHDKLPESQKRGITIDIGFSAFKLENY-RITLVDAPG 82
Query: 335 ---FISNIPTTLLEPFKVTLEDAMLA-----DIIIHVVDVSNPDYLQQKQHVDETLQHLE 386
I +++ D+ + VVD + Q T +H+
Sbjct: 83 HADLIRA----------------VVSAADIIDLALIVVDAKEG---PKTQ----TGEHML 119
Query: 387 LEEKILEHVLVVGNKVDAVPPG--ERVTEE--------YDL------LISATRGTGLAQL 430
+ + ++VV K D +R ++L ISA G G+ +L
Sbjct: 120 ILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179
Query: 431 KEKVQDMILKATGRKNI 447
K + + A +N
Sbjct: 180 KNLIITTLNNAEIIRNT 196
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 34.5 bits (80), Expect = 0.055
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 256 ALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALT 297
+K + R+++ K + V +VG N GK+T+I L
Sbjct: 80 TTHKGEP-RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLK 120
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 33.5 bits (76), Expect = 0.089
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 277 PTVAVVGYTNCGKTTLIKAL 296
VVGY + GKTTL++
Sbjct: 5 NVWQVVGYKHSGKTTLMEKW 24
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 34.2 bits (78), Expect = 0.092
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 259 KLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDS 301
K G ++M + ++ V VVG TN GK+T I + ++ +
Sbjct: 145 KGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT 187
Score = 33.0 bits (75), Expect = 0.22
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 29/120 (24%)
Query: 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH- 394
+ ++P + + +++++VD+ D + +
Sbjct: 51 VQDVPLDDDDFLSMLHRIGESKALVVNIVDI-----------FDFNGSFIPGLPRFAADN 99
Query: 395 -VLVVGNKVDAVPPG----------ERVTEEYDL------LISATRGTGLAQLKEKVQDM 437
+L+VGNK D +P R+ EE L L+SA +G G+A++ E +
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 34.5 bits (79), Expect = 0.10
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 24/109 (22%)
Query: 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAV------VGYTNCGKT----TLIKALTDD 299
+K+++ + + +K Q + + VG + GKT ++A+
Sbjct: 874 RKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQV 933
Query: 300 DSL-----------VPRNQLFATLDVTTHE---GMLPNRLRILYVDTIG 334
D++ + ++QLF +LD+TT E G+ LR + + G
Sbjct: 934 DNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRG 982
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 34.0 bits (77), Expect = 0.10
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 267 MRNKKQRQKFP-TVAVVGYTNCGKTTLIKAL-----TDDDSLVPRNQLFATLDVTTHEGM 320
+ K ++ F T+ VVG + GK+TLI +L + P +++ T+ V + +
Sbjct: 21 VYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL 80
Query: 321 LPN---RLRILYVDTIGFISNI 339
+ +L + VDT GF +
Sbjct: 81 IKEGGVQLLLTIVDTPGFGDAV 102
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 33.7 bits (76), Expect = 0.12
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 265 EMMRNKKQRQKFP-TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA------TLDVTTH 317
+ K ++ F T+ VVG + GK+TLI +L D R A T+ +
Sbjct: 25 NQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAS 84
Query: 318 -----EGMLPNRLRILYVDTIGFISNI 339
E + RL + VDT G+ I
Sbjct: 85 TVEIEERGVKLRLTV--VDTPGYGDAI 109
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 33.8 bits (78), Expect = 0.15
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 278 TVAVVGYTN-CGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
+ +VG TN GK+T +K L N E + R L +
Sbjct: 105 VLGLVG-TNGIGKSTALKILAG---KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELE 388
+ +++P V + + V ++ + + V ++ L+LE
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE 212
Score = 28.1 bits (63), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
+ ++G GKTTLIK L
Sbjct: 380 ILVMMGENGTGKTTLIKLLA 399
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 33.0 bits (76), Expect = 0.16
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 251 QKLKKALNKL-KGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
++ A ++ + + + MR K + + ++G N GK+TLI L
Sbjct: 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRL 140
Score = 31.5 bits (72), Expect = 0.57
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 35/116 (30%)
Query: 356 LADIIIHVVDV------SNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG- 408
L DI+ +VD NP +++ L++ K +++ NK D
Sbjct: 23 LIDIVYELVDARIPMSSRNPM-------IEDILKN-----K---PRIMLLNKADKADAAV 67
Query: 409 -ERVTEEYD------LLISATRGTGLAQLKEKVQDMI------LKATGRKNITMRV 451
++ E ++ L I++ G GL Q+ ++++ ++A G K +R
Sbjct: 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRA 123
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 33.4 bits (75), Expect = 0.19
Identities = 19/168 (11%), Positives = 52/168 (30%), Gaps = 16/168 (9%)
Query: 248 EREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
+ L++ + + + ++ + V+G GK+T + AL ++ L+P +
Sbjct: 46 SGKLSLERDIEDITIASKNLQQGV-----FRLLVLGDMKRGKSTFLNALIGEN-LLPSDV 99
Query: 308 LFATLDVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVS 367
T +T ++ I + D + + +A ++
Sbjct: 100 NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA-------KKLEQE 152
Query: 368 NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEY 415
+ L++ I +V ++ ++ Y
Sbjct: 153 KKQAFPDVDYAVVEYPLTLLQKGI---EIVDSPGLNDTEARNELSLGY 197
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 32.5 bits (73), Expect = 0.19
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 273 RQKFPTVAVVGYTNCGKTTLIKAL 296
+ P +A ++ GKTTL+K L
Sbjct: 3 KTMIPLLAFAAWSGTGKTTLLKKL 26
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 32.9 bits (76), Expect = 0.28
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
VA+VG T GKTT++ L
Sbjct: 383 KVALVGPTGSGKTTIVNLLM 402
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 32.2 bits (74), Expect = 0.48
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR 305
TVA VG + GK+TLI +L+PR
Sbjct: 369 TVAFVGMSGGGKSTLI-------NLIPR 389
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 31.3 bits (72), Expect = 0.53
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 7/28 (25%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR 305
+A G + GK+T+ SL+ R
Sbjct: 30 IIAFAGPSGGGKSTIF-------SLLER 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 30.9 bits (70), Expect = 0.69
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 281 VVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR-LRILYVDTIGFISNI 339
VVG GKT L+ + T + P + D + M+ + + + DT G
Sbjct: 10 VVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD 67
Query: 340 PTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQ--QKQHVDETLQHLELEEKILEHVLV 397
L + D+ + + +P + + + E H IL
Sbjct: 68 RLRPLSYPQ--------TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL----- 114
Query: 398 VGNKVD 403
VG K+D
Sbjct: 115 VGTKLD 120
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 31.5 bits (72), Expect = 0.69
Identities = 32/161 (19%), Positives = 49/161 (30%), Gaps = 59/161 (36%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLV---PRNQLFATLDVTTHEGMLPNRLRILYV---- 330
+ VVG N GK+T A T D + P F T++ N +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYP----FTTIE--------ANVGVTYAITDHP 49
Query: 331 -DTIGFISN------IPTTLLEPFKVT-------------------LEDAMLADIIIHVV 364
+G N L P K+ L+D +A +IHVV
Sbjct: 50 CKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV 109
Query: 365 DVS-NPDYLQQKQHVD---------ETLQHLELEEKILEHV 395
D + D + E L+ E++ I +
Sbjct: 110 DATGKTD---PEGQPTDYHDPVEDIEFLE-REIDYWIYGIL 146
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 31.4 bits (72), Expect = 0.76
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 12/38 (31%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVT 315
VAV+G T GK+TL+ +L+PR L D
Sbjct: 371 LVAVLGETGSGKSTLM-------NLIPR--LI---DPE 396
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 30.9 bits (71), Expect = 0.87
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR 305
+ +VG + GK+TL K L+ R
Sbjct: 37 VIGIVGRSGSGKSTLTK-------LIQR 57
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 31.0 bits (71), Expect = 1.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR 305
TVA+VG + GK+T+ SL+ R
Sbjct: 371 TVALVGRSGSGKSTIA-------SLITR 391
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 31.0 bits (71), Expect = 1.1
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPR 305
TVA+VG + GK+T+ +L R
Sbjct: 371 TVALVGRSGSGKSTIA-------NLFTR 391
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.9 bits (69), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 265 EMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALT 297
E +R + P V +VG + GKT+L + L
Sbjct: 129 EKIR--MSNFEGPRVVIVGGSQTGKTSLSRTLC 159
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 30.7 bits (70), Expect = 1.3
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 235 TKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRNKKQRQKFP----------------T 278
+G+L + + E K K +++ +RE + + K
Sbjct: 255 LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEV 314
Query: 279 VAVVGYTNCGKTTLIKALT 297
+ +VG GKTT +K L
Sbjct: 315 IGIVGPNGIGKTTFVKMLA 333
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 30.3 bits (68), Expect = 1.5
Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 57/222 (25%)
Query: 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAV--VGYTNCGKTTLIKALTDDDSLVPRNQ 307
+Q + + E + + V +G GKT+L+K L + + P+
Sbjct: 13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGE-TFDPKES 71
Query: 308 LFATLDVTTHEGMLPNRLRILYV---------DTIG----------FISNIPTTLLEPFK 348
L+V T + L D G F++
Sbjct: 72 QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTR---------- 121
Query: 349 VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPG 408
+ + + ++D + ++ V+VV NK+D P
Sbjct: 122 --------SSVYMLLLDSRTDSNK--HYWLRHIEKYGGKSP-----VIVVMNKIDENPSY 166
Query: 409 ERVTEEYD----------LLISATRGTGLAQLKEKVQDMILK 440
++ + IS G G+ + + ++ +L
Sbjct: 167 NIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
+ V G T GKTTL+KAL +P +Q
Sbjct: 177 VIVVAGETGSGKTTLMKALMQ---EIPFDQ 203
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 30.3 bits (69), Expect = 1.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
T+A+VG + GK+T+++ L
Sbjct: 82 TLALVGPSGAGKSTILRLL 100
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 30.0 bits (67), Expect = 1.6
Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 7/136 (5%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
+ +VG T GK+ ++ R + T ++ + VDT S
Sbjct: 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82
Query: 338 NIPTTLLEPFKVTLEDAMLA----DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE 393
+ + + +L+ ++ V + Q+ ++ + E +L+
Sbjct: 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAV--RQVRDM-FGEDVLK 139
Query: 394 HVLVVGNKVDAVPPGE 409
+++V + + + G
Sbjct: 140 WMVIVFTRKEDLAGGS 155
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 30.4 bits (69), Expect = 1.7
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 278 TVAVVGYTNCGKTTLIK 294
T+A+VG + CGK+T+++
Sbjct: 1061 TLALVGSSGCGKSTVVQ 1077
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
T A+VG+T GK+T+ K L
Sbjct: 48 TCALVGHTGSGKSTIAKLL 66
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 29.7 bits (67), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
V V G T GKTT IK++ + +P+ +
Sbjct: 173 NVIVCGGTGSGKTTYIKSIME---FIPKEE 199
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 29.1 bits (66), Expect = 2.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 357 ADIIIHVVDVSNPDYLQQKQH-VDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEE 414
AD + V DV+N + + DE L H + +++GNK+DA + V+E+
Sbjct: 82 ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.6 bits (67), Expect = 2.5
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 184 QVPVFDRYMIVIQIFKAHAKTREARLQIAIAELPYLWTRYRTIEDATNMNITKGFLDSKR 243
+ V V IF TR + L R+R E + +D +R
Sbjct: 297 VIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSER--VDVER 354
Query: 244 MVLMEREQKLKK----ALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALT 297
L+E + +K L G E+ + + + +VG GKTT +K L
Sbjct: 355 ETLVEYPRLVKDYGSFKLEVEPG--EIRKGE-------VIGIVGPNGIGKTTFVKMLA 403
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.4 bits (65), Expect = 3.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 240 DSKRMVLMEREQKLKKALNKLKGQREMMRNKKQR-QKFPTVAVVGYTNCGKTTLIKALTD 298
D+ R V + E + + KL+ R ++++ + V V G CGKT I + +
Sbjct: 124 DNWRRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183
Query: 299 DDS---LVPRNQL 308
+ LVP Q
Sbjct: 184 FEEDLILVPGRQA 196
>4ef4_A Transmembrane protein 173; sting/MITA/ERIS/MPYS/TMEM173, innate
immune system, type I interferon, dimerization,
C-DI-GMP; HET: C2E; 2.15A {Homo sapiens} PDB: 4ef5_A
Length = 265
Score = 28.9 bits (64), Expect = 3.7
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 379 DETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISA 421
E L+HL EEK E V V K AVP +++E +LLIS
Sbjct: 213 QEVLRHLRQEEK--EEVTVGSLKTSAVPSTSTMSQEPELLISG 253
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.8 bits (65), Expect = 4.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
+ ++G GKTT + L
Sbjct: 296 IIGILGPNGIGKTTFARILV 315
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 28.7 bits (64), Expect = 5.2
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 252 KLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQ 307
K+++A L + P +AVVG + GK+++++++ D L PR
Sbjct: 10 KIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL-PRGS 64
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A
{Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Length = 300
Score = 28.2 bits (64), Expect = 5.4
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 270 KKQRQKFPTVAVVGYTNCGKTTLIKALTD 298
+ ++K+P VV Y N T KA D
Sbjct: 95 LEAKRKYPNAPVVLYVNS--TAEAKAYAD 121
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.8 bits (64), Expect = 5.7
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM-LPNRLRILYVD 331
+ G CGK+TL++A+ + +G R +YV+
Sbjct: 464 YGICGPNGCGKSTLMRAIANGQV----------------DGFPTQEECRTVYVE 501
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 28.0 bits (63), Expect = 6.0
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 20/77 (25%)
Query: 235 TKGFLDSKRMVLMEREQKLKKALNKLKGQREMMRN----KKQRQKFP------------- 277
T +D + EQ N+L Q E + ++R+ P
Sbjct: 15 TSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAIS 74
Query: 278 ---TVAVVGYTNCGKTT 291
V + G T CGKTT
Sbjct: 75 QNSVVIIRGATGCGKTT 91
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.9 bits (63), Expect = 6.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 279 VAVVGYTNCGKTTLIKAL 296
+AV G T GKT+L+ +
Sbjct: 37 LAVAGSTGAGKTSLLMMI 54
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 28.3 bits (64), Expect = 6.1
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 394 HVLVVGNKVDAVPPGERVTEE---------YD-LLISATRGTGLAQLKEKVQD 436
++V NK+D + Y + SA G G+ +LKE ++
Sbjct: 117 ETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 28.4 bits (63), Expect = 6.2
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 20/63 (31%)
Query: 244 MVLMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLV 303
MV +Q + L + +RN ++V+ + + GK+TL DSLV
Sbjct: 1 MVAFTVDQ-----MRSLMDKVTNVRN---------MSVIAHVDHGKSTLT------DSLV 40
Query: 304 PRN 306
R
Sbjct: 41 QRA 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 28.1 bits (63), Expect = 6.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 279 VAVVGYTNCGKTTLIKAL 296
V ++G T GK+TL+ A
Sbjct: 50 VGLLGRTGSGKSTLLSAF 67
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.4 bits (64), Expect = 6.5
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 394 HVLVVGNKVDAVPPGER-----VTEEYD------LLISATRGTGLAQLKEKVQD 436
L+V NK+D + + Y L++S+ GL L+E +
Sbjct: 162 EPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG 215
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 27.9 bits (63), Expect = 6.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 279 VAVVGYTNCGKTTLIKAL 296
VAVVG CGK++L+ AL
Sbjct: 34 VAVVGQVGCGKSSLLSAL 51
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.9 bits (63), Expect = 6.7
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 263 QREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDD 300
RE + + ++ T+ ++G + G++ + AL +
Sbjct: 10 GRENLYFQGRK----TLVLIGASGVGRSHIKNALLSQN 43
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 28.2 bits (62), Expect = 6.9
Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 14/84 (16%)
Query: 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV--GNKVDAVP--PGERVTE 413
D I+V + + + + + L+V V P +
Sbjct: 212 DGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271
Query: 414 EYDL----------LISATRGTGL 427
E L A TG
Sbjct: 272 ELHLNLLNHPWLVQDTEAETLTGF 295
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 28.1 bits (63), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 279 VAVVGYTNCGKTTLIKAL 296
+AV G T GKT+L+ +
Sbjct: 67 LAVAGSTGAGKTSLLMMI 84
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 28.1 bits (62), Expect = 7.0
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 274 QKFPTVAVVGYTNCGKTTLIKALTD 298
+K P ++V G + G +T+
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 27.5 bits (62), Expect = 7.3
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 402 VDAVPPGERVTEEYDLLISATRGTGLA--QLKEKVQDMILKAT---------GRKNITMR 450
+A+P G V D++ AT G+ A +L E+++ +L+ GR +
Sbjct: 116 KNAIPAGSNVIIVDDII--ATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAP 173
Query: 451 VRS 453
V +
Sbjct: 174 VFT 176
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 27.6 bits (62), Expect = 7.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 402 VDAVPPGERVTEEYDLLISATRGTGLAQLK 431
+ P + V D+L AT GT LA ++
Sbjct: 111 KRQLGPHDVVLLHDDVL--ATGGTLLAAIE 138
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 8.0
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 247 MEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTD 298
ME ++ + + R + + G + GKTTL L+
Sbjct: 1 MELRDRIDFLCKTILAIKTAGR--------LVLGIDGLSRSGKTTLANQLSQ 44
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 27.9 bits (63), Expect = 8.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 279 VAVVGYTNCGKTTLIKAL 296
+ V G T GK+TL++ +
Sbjct: 36 LLVAGNTGSGKSTLLQIV 53
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 27.9 bits (62), Expect = 8.9
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 255 KALNKLKGQRE----MMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
K+LN L E + Q + P + + G GK T AL
Sbjct: 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMAL 56
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 27.3 bits (60), Expect = 9.2
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 14/84 (16%)
Query: 358 DIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV--GNKVDAVP--PGERVTE 413
D I+V + + + + + L+V V P +
Sbjct: 127 DGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186
Query: 414 EYDLLI----------SATRGTGL 427
E L + A TG
Sbjct: 187 ELHLNLLNHPWLVQDTEAETLTGF 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.5 bits (62), Expect = 9.6
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 394 HVLVVGNKVDAVPPGER-----VTEEYD------LLISATRGTGLAQLKEKVQD 436
++V NK+D + E+ Y L +SA G G+ +L + ++
Sbjct: 112 EPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.377
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,552,562
Number of extensions: 465997
Number of successful extensions: 1530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1461
Number of HSP's successfully gapped: 166
Length of query: 505
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 407
Effective length of database: 3,965,535
Effective search space: 1613972745
Effective search space used: 1613972745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)