RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy50
(505 letters)
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 73.1 bits (178), Expect = 9e-16
Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
V +VGY N GK++L+ A+T + F TL + R D G I
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAHPKI-APYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Query: 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396
L ++++V+D ++ + E + + L
Sbjct: 61 EGAS-EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRR--PSL 117
Query: 397 VVGNKVDAVPPGERVTEEYDLL---------ISATRGTGLAQLKEKVQDMI 438
V NKVD + E V D L +SA G GL LKE + ++
Sbjct: 118 VALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALV 167
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 70.3 bits (171), Expect = 1e-14
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 12/172 (6%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
V +VG+ + GK+TL+ ++ + + F TL + + D G I
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKI-ADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
Query: 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPD--YLQQKQHVDETLQHLELEEKILEH 394
+ L +I+HV+D+S +
Sbjct: 61 EG-AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 395 VLVVGNKVDAVPPGERVTEEYDLL--------ISATRGTGLAQLKEKVQDMI 438
++V NK+D E + + L ISA GL +L +V + +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 62.3 bits (150), Expect = 4e-12
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ +VG N GK+TL+ L ++D + + T DV + E ++ VDT G S
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI-LFRIVDTAGVRSE 61
Query: 339 IPTTLLEP-FKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
+ + TL++ ADI++ V+D S+P + ++ ++ ++ + +
Sbjct: 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNK---RYLVVINKVD 118
Query: 398 VGNKVDAVPPGERVTEEYDLL-ISATRGTGLAQLKEKV 434
V K++ ++ + ++ ISA +G GL +L+E +
Sbjct: 119 VVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 58.9 bits (141), Expect = 8e-11
Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 21/181 (11%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR--LRILYVDTIGF 335
T+ G +N GK+TLI LT + T + E +
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60
Query: 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSN-PDYLQQKQHVDETLQHLELEEKILEH 394
E ++A D+ + VVD P+ +++ + E +E + + E
Sbjct: 61 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120
Query: 395 ---VLVVGNKVDAVPPGERVTEEYDL--------------LISATRGTGLAQLKEKVQDM 437
+V NK+D + + V ISA G + +LK ++ ++
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
Query: 438 I 438
I
Sbjct: 181 I 181
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 57.1 bits (136), Expect = 3e-10
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 1/162 (0%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
TV +VG N GK+TL L + ++ T D + L F +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61
Query: 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV-L 396
+ +VTL AD+++ VVD + + D + +
Sbjct: 62 PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121
Query: 397 VVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMI 438
+ + + P + + +SA L + E + +
Sbjct: 122 LREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 56.3 bits (134), Expect = 6e-10
Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 5/171 (2%)
Query: 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVD 331
+ +A+VG N GK+TL+ L + ++ T + +YVD
Sbjct: 1 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVD 59
Query: 332 TIGFISNIPTTLLEPFKVTLEDAM-LADIIIHVVDVSNPDYLQQ---KQHVDETLQHLEL 387
T G + ++ +++I VV+ + + + + +
Sbjct: 60 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILA 119
Query: 388 EEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMI 438
K+ ++ + ISA G + + V+ +
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 53.6 bits (127), Expect = 3e-09
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
V + G N GK++L+ AL ++ + + T D E + + + + +DT G
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-VLREHIHIDGMPLHIIDTAGLRE 61
Query: 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
+ ++ AD ++ +VD + D + + E + L + I
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR-- 119
Query: 398 VGNKVDAVPPGERVTEEYD---LLISATRGTGLAQLKEKVQDMI 438
NK D ++E + +SA G G+ L+ ++ +
Sbjct: 120 --NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 54.8 bits (131), Expect = 6e-09
Identities = 23/202 (11%), Positives = 58/202 (28%), Gaps = 19/202 (9%)
Query: 246 LMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPR 305
+ + L +L G K++ T+ V+G GK++ + ++ + +
Sbjct: 7 INTFAPATQTKLLELLGNL-----KQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS 61
Query: 306 NQLFATLDVTTHEGMLPNRLRILYVDTIGFI-SNIPTTLLEPFKVTLEDAMLADIIIHVV 364
+ +DT G I + + D++++V
Sbjct: 62 PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVD 120
Query: 365 DVSNPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRG 424
+ + V + + + I +V PP +E+
Sbjct: 121 RLDAYRVDNLDKLVAKAITDS-FGKGIWNKAIVALTHAQFSPPDGLPYDEFF-------- 171
Query: 425 TGLAQLKEKVQDMILKATGRKN 446
++ E + ++ K
Sbjct: 172 ---SKRSEALLQVVRSGASLKK 190
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 52.8 bits (125), Expect = 1e-08
Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 13/177 (7%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
VA+VG N GK+TL A+ + + + T D E + R + +VDT G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV-FVDTAGLRR 68
Query: 338 NIPTTL----LEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE 393
++ AD+++ V+D + Q ++ + +
Sbjct: 69 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128
Query: 394 HVLVVGNKVDAVPPGERVTEEYD--------LLISATRGTGLAQLKEKVQDMILKAT 442
+V ++ ++ E + SA +G + ++ + + T
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 185
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 52.1 bits (123), Expect = 2e-08
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
VA G +N GK++ + LT+ SL R + + + R++ + G+
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLA-RTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75
Query: 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396
+ + E + +V + + + + Q +E VL
Sbjct: 76 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ----QMIEWAVDSNIAVL 131
Query: 397 VVGNKVDAVPPGERVTEEYDL--------------LISATRGTGLAQLKEKVQDMI 438
V+ K D + G R + + S+ + G+ +L++K+
Sbjct: 132 VLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 48.6 bits (114), Expect = 2e-07
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 14/175 (8%)
Query: 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVD 331
++ VA+VG N GK+TL+ L + P + T + R +I++VD
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVD 59
Query: 332 TIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391
T G + + E + ++ VVD+ +P + + + +
Sbjct: 60 TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL 119
Query: 392 LEHVLVVGNKVDAVPPGERVTEEYD--------LLISATRGTGLAQLKEKVQDMI 438
L NK+DA E + Y ++SA +A+LK + ++
Sbjct: 120 LVG-----NKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 47.4 bits (111), Expect = 8e-07
Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 18/179 (10%)
Query: 273 RQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDT 332
P +A+ G +N GK++ I +L + +L R T + ++ + L + V
Sbjct: 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLA-RTSSKPGKTQTLNFYIINDELHFVDVPG 78
Query: 333 IGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKIL 392
GF + ++ + + VV + + + V +
Sbjct: 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFL----KYYG 134
Query: 393 EHVLVVGNKVDAVPPGERVTEEYDL-------------LISATRGTGLAQLKEKVQDMI 438
V+V+ K D +P G+ + L S+ G + ++ MI
Sbjct: 135 IPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 47.1 bits (111), Expect = 3e-06
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 23/194 (11%)
Query: 250 EQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLF 309
++ + + + + + VAV G T GK++ I L +
Sbjct: 35 AGNIQLTNSAISDALKEIDSSVLN-----VAVTGETGSGKSSFINTLRGIGNEEEGAAKT 89
Query: 310 ATLDVTT--HEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVS 367
++VT H PN +++ D G + P LE + ++ +
Sbjct: 90 GVVEVTMERHPYKHPNIPNVVFWDLPGIG-----STNFPPDTYLEKMKFYEYDFFIIISA 144
Query: 368 NPDYLQQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGL 427
+ + + + V KVD+ E E + L
Sbjct: 145 TR-------FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTF----DKEKVL 193
Query: 428 AQLKEKVQDMILKA 441
++ + +
Sbjct: 194 QDIRLNCVNTFREN 207
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 42.2 bits (98), Expect = 4e-05
Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 23/173 (13%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ ++G ++ GKT+ + DD R+++ DT G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG---- 63
Query: 339 IPTTLLEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
E ++ A I + D++N + Q ++ + VL+
Sbjct: 64 -----QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA---QVLL 115
Query: 398 VGNKVDAVPPGERVTEEYD----------LLISATRGTGLAQLKEKVQDMILK 440
VGNK D +E SA + Q E++ D+I +
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 41.4 bits (96), Expect = 7e-05
Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 23/180 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V ++G + GK+ L+ T ++ + + + G+ I
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNL---------ESKSTIGVEFATRSIQVDGKTIKAQI 57
Query: 339 IPTTLLEPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
T E ++ +T A + V D++ + + + L+ + +++
Sbjct: 58 WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV---IML 114
Query: 398 VGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILKATGRKNI 447
VGNK D T+E SA T + + + + I + +K I
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 41.5 bits (96), Expect = 7e-05
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 14/128 (10%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V VG + GKT L L ++ ++ + N
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQ----YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 58
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE---HV 395
F++ A ++ VVD + ++ + V E L + ++ L+ +
Sbjct: 59 SL-----RFQLLDRFKSSARAVVFVVDS--AAFQREVKDVAEFLYQVLIDSMALKNSPSL 111
Query: 396 LVVGNKVD 403
L+ NK D
Sbjct: 112 LIACNKQD 119
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 41.5 bits (96), Expect = 8e-05
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 8/127 (6%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
P++ + G N GKT+L+ LT D + T+ + +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDS-------VRPTVVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396
+ L + K + ++ + + + L E + +L
Sbjct: 57 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLT-TTAEFLVDILSITESSCENGIDIL 115
Query: 397 VVGNKVD 403
+ NK +
Sbjct: 116 IACNKSE 122
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 40.3 bits (93), Expect = 1e-04
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 21/172 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V +VG GK+ L D+ F D + + +L + +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDE--------FVE-DYEPTKADSYRKKVVLDGEEVQIDIL 57
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ + + + V ++ + E + ++ +E + L+V
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 115
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILK 440
GNK D + EE SA + ++ + I
Sbjct: 116 GNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 39.9 bits (92), Expect = 2e-04
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 21/172 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
++G T GK+ L+ TD F + T R+ + I
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKR--------FQPVHDLTIGVEFGARMVNIDGKQIKLQIW 57
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+T A + V D++ + E + + ++++
Sbjct: 58 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV---IMLI 114
Query: 399 GNKVDAVPPGERVTEEYD----------LLISATRGTGLAQLKEKVQDMILK 440
GNK D + EE + + SA + + I +
Sbjct: 115 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 40.2 bits (93), Expect = 4e-04
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD 313
+VG N GK+T +A+T P N +AT+D
Sbjct: 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID 47
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 38.6 bits (89), Expect = 6e-04
Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 25/174 (14%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR-LRILYVDTIGFIS 337
+ ++G + GKT ++ + +D+ +D L + +++ DT G
Sbjct: 9 LLLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG--- 64
Query: 338 NIPTTLLEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396
E F+ A I+ V D++N ++ ++++E +
Sbjct: 65 ------QERFRTITTAYYRGAMGIMLVYDITNEKSF---DNIRNWIRNIEEHASADVEKM 115
Query: 397 VVGNKVDAVPPGERVTEEYD----------LLISATRGTGLAQLKEKVQDMILK 440
++GNK D + E + + SA + + I
Sbjct: 116 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 38.5 bits (88), Expect = 6e-04
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 19/181 (10%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V ++G + GKT+L+ + F+ T + ++ +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKK--------FSNQYKATIGADFLTKEVMVDDRLVTMQIW 56
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDET-LQHLELEEKILEHVLV 397
+ + AD + V DV+ P+ + + L + +V
Sbjct: 57 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 116
Query: 398 VGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILKATGRKNI 447
+GNK+D SA + Q + + LK +
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176
Query: 448 T 448
Sbjct: 177 Y 177
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.8 bits (87), Expect = 8e-04
Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 16/169 (9%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ ++G + GK+ L+ +D + ++++ DT G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG---- 60
Query: 339 IPTTLLEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
E F+ A II V D+++ + +T+ +E L V
Sbjct: 61 -----QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115
Query: 398 VGNKVDAVPP---GERVTEEYDLL---ISATRGTGLAQLKEKVQDMILK 440
+ V GE + +E + SA + ++ + +I +
Sbjct: 116 KSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 38.0 bits (87), Expect = 0.001
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 23/173 (13%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V+G GK+ L+ + N + + +++ DT G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG---- 63
Query: 339 IPTTLLEPFKVTLEDAM-LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
E F+ A + V D+++ + + + L + +++
Sbjct: 64 -----QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIIL 115
Query: 398 VGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILK 440
GNK D E E SA G + + + IL
Sbjct: 116 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 37.8 bits (86), Expect = 0.001
Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 22/172 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ ++G GKTT++ L + VTT + N + Y + + +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEV------------VTTIPTIGFNVETVTYKNLKFQVWD 55
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ + +I V K + L+ EL + IL
Sbjct: 56 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 115
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILK 440
+ A+ E SAT+GTGL + E + + +
Sbjct: 116 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 38.4 bits (88), Expect = 0.001
Identities = 28/153 (18%), Positives = 45/153 (29%), Gaps = 31/153 (20%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLD-----------------------VT 315
+ VVG N GK+T A T D + N F T++
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 316 THEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQ-- 373
+ + VD G + L+D +A +IHVVD + +
Sbjct: 62 YEYRNGLALIPVKMVDVAGLVPG-AHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 374 ----QKQHVDETLQHLELEEKILEHVLVVGNKV 402
D E++ I + +K
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKF 153
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 37.2 bits (85), Expect = 0.002
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 21/173 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V V+G GK+ L + + + + + + +DT G
Sbjct: 6 VVVLGSGGVGKSALTVQFV-TGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
L I V + N Q + + + + ++ EK+ V++V
Sbjct: 65 ASMRDLY--------IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV--PVILV 114
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILKA 441
GNKVD E + E L SA T + +L ++ + A
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYA 167
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 36.4 bits (83), Expect = 0.003
Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 21/172 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ ++G + GK++L+ TDD + N+ ++ DT G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG---- 65
Query: 339 IPTTLLEPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
E F+ +T A +I V DV+ D + + + + ++
Sbjct: 66 -----QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN--ELETYCTRNDIVNML 118
Query: 398 VGNKVDAVPPGERVTEEYDLL---------ISATRGTGLAQLKEKVQDMILK 440
VGNK+D E SA G+ E++ + I++
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 36.5 bits (83), Expect = 0.004
Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 31/191 (16%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEG-------MLPNRLRILYVD 331
+ VVG+ + GKTTL++A+T + +L + + + +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 332 TIGFISNIPTTLLEPFKVTLEDAMLAD---------IIIHVVDVSNPDYLQQKQHVDETL 382
+++ DA + + + +
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 383 QHLELEEKILEHVLVVGNKVDAVPPG---ERVTEEYDLL------------ISATRGTGL 427
+ L ++++++V NKVD V + + +SA +
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 428 AQLKEKVQDMI 438
L E +++ I
Sbjct: 191 DSLIEGIEEYI 201
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 36.1 bits (83), Expect = 0.004
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 39/155 (25%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA----------------TLDVTTHEGMLP 322
V +G+ + GKTTL ALT + N T++ E
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 323 NRLRILYVDTIG---FISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVD 379
R +VD G +I N+ T A D I VV ++ Q
Sbjct: 66 KR-HYSHVDCPGHADYIKNMITG-----------AAQMDGAILVVSAADGPMPQ------ 107
Query: 380 ETLQHLELEEKI-LEHVLVVGNKVDAVPPGERVTE 413
T +H+ L ++ + +++V NKVD V E +
Sbjct: 108 -TREHILLARQVGVPYIVVFMNKVDMVDDPELLDL 141
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 35.7 bits (81), Expect = 0.004
Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 20/174 (11%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
VAV G GK++L+ F + T E + I++
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGT--------FRESYIPTVEDTYRQVISCDKSICTLQITD 56
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ P L + I+ S + K ++ + E I +++V
Sbjct: 57 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESI--PIMLV 114
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILKAT 442
GNK D P E + E + L SA + +L +++ ++ + T
Sbjct: 115 GNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 35.7 bits (81), Expect = 0.005
Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 28/186 (15%)
Query: 266 MMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRL 325
+ + K + + ++G N GKTTL+K L + D++ +
Sbjct: 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE-------------DISHITPTQGFNI 52
Query: 326 RILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHL 385
+ + + DI+I+V+D ++ ++ L
Sbjct: 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 386 ELEEKILEHVLVVGNKVDAVPPGERVTEEYDL-------------LISATRGTGLAQLKE 432
E + VL+ NK D + L SA G G+
Sbjct: 113 EKLSCV--PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170
Query: 433 KVQDMI 438
V +
Sbjct: 171 WVCKNV 176
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.4 bits (80), Expect = 0.006
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 31/174 (17%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ +G N GKTTL+ L +D ATL T H + I F +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDR--------LATLQPTWHPTSEEL-----AIGNIKFTTF 49
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
++ ++ + + I+ +VD ++P+ + + + L ++ + + +L
Sbjct: 50 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 109
Query: 399 GNKVDAVPPGERVTEEYDLL------------------ISATRGTGLAQLKEKV 434
+ LL S G + + +
Sbjct: 110 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 35.0 bits (79), Expect = 0.008
Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ +VG GKTT++ L ++ T + + + I F
Sbjct: 3 ILMVGLDAAGKTTILYKLKLG-------------EIVTTIPTIGFNVETVEYKNISFTVW 49
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQ-KQHVDETLQHLELEEKILEHVLV 397
+ + +I VVD ++ + + + ++ + L EL + +L
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 398 VGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMI 438
+ +A+ E + AT G GL + + + + +
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 35.0 bits (79), Expect = 0.009
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 24/177 (13%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V ++G + GKT+L+ +D G +
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQ---------QYKATIGADFLTKEVTVDGDKVATMQ 55
Query: 339 IPTTLLEPFKVTLEDA---MLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395
+ T + +L A ++ + + K DE L H +
Sbjct: 56 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 115
Query: 396 LVVGNKVDAVPPGERVTEEYD------------LLISATRGTGLAQLKEKVQDMILK 440
+++GNK+DA + V+E+ L SA + E++ L+
Sbjct: 116 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 34.3 bits (77), Expect = 0.013
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 14/168 (8%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLR-----ILYVDTI 333
+ ++G N GKTT++K +D T+ T + R I V
Sbjct: 5 LLMLGLDNAGKTTILKKFNGED--------VDTISPTLGFNIKTLEHRGFKLNIWDVGGQ 56
Query: 334 GFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE 393
+ + E + AD L ++ + + ++ L
Sbjct: 57 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116
Query: 394 HVLVVGNKVDAVPPGERVTEEYDLL-ISATRGTGLAQLKEKVQDMILK 440
L +A+ + + + SA G L + + D I
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 35.0 bits (80), Expect = 0.014
Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 46/170 (27%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFA---------------------------- 310
V V+G+ + GK+T L + + +
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 311 --TLDVTTHEGMLPNRLRILYVDTIG---FISNIPTTLLEPFKVTLEDAMLADIIIHVVD 365
T+D+ + P ++ +D G FI N+ T AD I ++
Sbjct: 69 GITIDIALWKFETPKY-QVTVIDAPGHRDFIKNMITG-----------TSQADCAILIIA 116
Query: 366 VSNPDYLQQKQHVDETLQHLELEEKI-LEHVLVVGNKVDAVPPGERVTEE 414
++ +T +H L + + ++V NK+D+V E +E
Sbjct: 117 GGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQE 166
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 34.5 bits (78), Expect = 0.016
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 23/181 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ ++G + GK+ L+ +DD + +++ DT G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG---- 64
Query: 339 IPTTLLEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
E F+ + II V DV++ + + + + + L+
Sbjct: 65 -----QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL---KLL 116
Query: 398 VGNKVDAVPPGERVTEEY----------DLLISATRGTGLAQLKEKVQDMILKATGRKNI 447
VGNK D + L SA T + + I ++ ++N+
Sbjct: 117 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 176
Query: 448 T 448
Sbjct: 177 N 177
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 33.7 bits (76), Expect = 0.020
Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 23/171 (13%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
++G GK+ L+ T+ F D G+ I +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKK--------FMA-DCPHTIGVEFGTRIIEVSGQKIKLQI 57
Query: 339 IPTTLLEPFK-VTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
T E F+ VT A + V D++ ++L + +++
Sbjct: 58 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV---IIL 114
Query: 398 VGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMI 438
+GNK D + EE SA G + + I
Sbjct: 115 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 33.4 bits (75), Expect = 0.028
Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 20/171 (11%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ VVG GK+ L L + + + ++ +T
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHF---------VDEYDPTIEDSYRKQVVIDGETCLLDIL 56
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
E + + + + V ++N + E ++ ++ + + +++V
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP--MVLV 114
Query: 399 GNKVDAVPPGERVTEEYD---------LLISATRGTGLAQLKEKVQDMILK 440
GNK D + D + SA G+ + I +
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 33.8 bits (77), Expect = 0.035
Identities = 37/149 (24%), Positives = 52/149 (34%), Gaps = 43/149 (28%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP---NRLRILYVDTIG 334
+VG N GK+TL ALT N F T++ + G++P RL D +
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEA-ANYPFCTIE--PNTGVVPMPDPRL-----DALA 55
Query: 335 FISN----IPTT------------------LLEPFKVTLEDAMLADIIIHVVDVS-NPDY 371
I +PTT L F L + D I HVV N D
Sbjct: 56 EIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKF---LANIRETDAIGHVVRCFENDDI 112
Query: 372 LQQKQHVD-----ETLQHLELEEKILEHV 395
+ +D +T+ EL L+
Sbjct: 113 VHVAGKIDPLDDIDTINT-ELALADLDSC 140
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.5 bits (73), Expect = 0.054
Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 18/171 (10%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYV-DTIGFIS 337
V +VG + GKT L+ D L +D + L + DT G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG--- 65
Query: 338 NIPTTLLEPFKVTLEDAML-ADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396
E F+ A ++ + DV+N Q + + L +
Sbjct: 66 ------QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 119
Query: 397 VVGNKVDAVPP----GERVTEEYDLL---ISATRGTGLAQLKEKVQDMILK 440
+ GE++ +EY L SA G + + + +
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 31.9 bits (71), Expect = 0.11
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 33/192 (17%)
Query: 257 LNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316
+ +L +E V +VG N GKTT++ + ++ V T
Sbjct: 7 IWRLFNHQEH-----------KVIIVGLDNAGKTTILYQFSMNE------------VVHT 43
Query: 317 HEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQ 376
+ N I+ +T + +I +I+ V ++
Sbjct: 44 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 103
Query: 377 HVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISATRGTG 426
+ + L H +L + L + + + E A G G
Sbjct: 104 ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 163
Query: 427 LAQLKEKVQDMI 438
L Q E + +
Sbjct: 164 LCQGLEWMMSRL 175
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.11
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 21/140 (15%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFI 336
P +A ++ GKTTL+K L L R +
Sbjct: 3 PLLAFAAWSGTGKTTLLKKL---------------------IPALCARGIRPGLIKHTHH 41
Query: 337 SNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVL 396
+ + I+ + ++ +D ++ L+ +L
Sbjct: 42 DMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLIL 101
Query: 397 VVGNKVDAVPPGERVTEEYD 416
V G K + + +
Sbjct: 102 VEGFKHEEIAKIVLFRDGAG 121
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 31.9 bits (71), Expect = 0.11
Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 32/198 (16%)
Query: 253 LKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATL 312
+KL G + +R + ++G GKTT++ L +
Sbjct: 4 FSSMFDKLWGSNKELR----------ILILGLDGAGKTTILYRLQIGEV----------- 42
Query: 313 DVTTHEGMLPNRLRILYVDTIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYL 372
VTT + N + Y + + ++ A A +I V
Sbjct: 43 -VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 101
Query: 373 QQKQHVDETLQHLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLL----------ISAT 422
+ + LQ EL++ L ++ A+ E E + SA
Sbjct: 102 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 161
Query: 423 RGTGLAQLKEKVQDMILK 440
+G G+ + + + D+I +
Sbjct: 162 KGEGITEGLDWLIDVIKE 179
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 32.5 bits (73), Expect = 0.11
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 252 KLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFAT 311
+L +NKL Q P + VVG + GK+++++ + D L PR T
Sbjct: 2 QLIPVINKL--QDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFL-PRGSGIVT 58
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 32.0 bits (72), Expect = 0.15
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 264 REMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE 318
R +M + ++V+ + + GK+TL +L ++ + T +
Sbjct: 8 RSLMDKVTNVR---NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRK 59
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.2 bits (69), Expect = 0.15
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+ +VG GKTT + +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ 26
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 31.8 bits (72), Expect = 0.16
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
+A G + GK+T+ L
Sbjct: 30 IIAFAGPSGGGKSTIFSLL 48
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 31.2 bits (69), Expect = 0.16
Identities = 23/175 (13%), Positives = 44/175 (25%), Gaps = 10/175 (5%)
Query: 274 QKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTI 333
+K + +G N GKTTL+ L DD L T + T GM +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70
Query: 334 GFIS----------NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQ 383
+ + ++ L ++ + P + +
Sbjct: 71 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130
Query: 384 HLELEEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLKEKVQDMI 438
E ++ K + S + G + + I
Sbjct: 131 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.2 bits (69), Expect = 0.19
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 279 VAVVGYTNCGKTTLIKALT 297
+ + G+ + GKTTL K LT
Sbjct: 8 LGIFGHIDHGKTTLSKVLT 26
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 31.4 bits (71), Expect = 0.21
Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 13/123 (10%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEG------MLPNRLRILYVD 331
++++G + GK+T ++ + + + ++ + L
Sbjct: 30 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 332 TIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391
+ + L V LE+ M A I + + ++ + L + ++E+
Sbjct: 90 RLTMVFQHF-NLWSHMTV-LENVMEAPIQVLGLSKH-----DARERALKYLAKVGIDERA 142
Query: 392 LEH 394
Sbjct: 143 QGK 145
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 31.0 bits (69), Expect = 0.21
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 9/135 (6%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHE-------GMLPNRLRILYVD 331
VVGY + GKTTL++ V T+ H G+ R
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAA--AVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAV 61
Query: 332 TIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391
+ L + D +LA +D+ + +Q++H L E +
Sbjct: 62 ATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWAS 121
Query: 392 LEHVLVVGNKVDAVP 406
L+H+ + + P
Sbjct: 122 LQHLANIRAVIAWEP 136
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 31.4 bits (70), Expect = 0.22
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 269 NKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM 320
+ +R++ G + GK+TLI L D ++ + L A + G
Sbjct: 2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGT 53
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 30.8 bits (69), Expect = 0.23
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 279 VAVVGYTNCGKTTLIKALT-----DDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTI 333
V +G+ + GKTTL A+T + + + G+ N + Y
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 334 GFISNIPTTLLEPF-KVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKIL 392
++ + K + D I VV ++ Q ++H+ L + +
Sbjct: 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL------LLARQIGV 119
Query: 393 EHVLVVGNKVDAVPPGERVTE 413
EHV+V NK DAV E V
Sbjct: 120 EHVVVYVNKADAVQDSEMVEL 140
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 30.7 bits (68), Expect = 0.26
Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 26/192 (13%)
Query: 273 RQKFPTVAVVGYTNCGKTTLIKALT--DDDSLVPRNQLFATLDVTTHEGMLPNRLRILYV 330
RQ + +VG+ + GKTTL KALT D+ + T+ + + +
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRY 61
Query: 331 DTIGFISNIPTTLLEPFKVTLEDAMLADIII---------HVVDVSNPDYLQQKQHVDET 381
T +V+ DA + ++ + +
Sbjct: 62 STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR 121
Query: 382 LQHLELEEKILEHVLVVGNKVDAVPPGE---RVTEEYDLL------------ISATRGTG 426
+ L+ +++++ NK++ V + + + + ISA G
Sbjct: 122 EHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN 181
Query: 427 LAQLKEKVQDMI 438
+ L + ++D I
Sbjct: 182 IDVLVKAIEDFI 193
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.7 bits (68), Expect = 0.28
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 12/137 (8%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
VVG GKT L+ + T + P + D + M+ + L + +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ T D+ + + +P + + +++V
Sbjct: 66 YDRLRPLSYPQT-------DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP---IILV 115
Query: 399 GNKVDAVPPGERVTEEY 415
G K+D + + +
Sbjct: 116 GTKLDLRDDKDTIEKLK 132
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.7 bits (68), Expect = 0.28
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
VVG GKT L+ + T + F + V T ++ +
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNK--------FPSEYVPTVFDNYAV--TVMIGGEPYTLGL 55
Query: 339 IPTTLLEPFKVTLEDAM-LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
T E + + D+ + V +P + + + L+
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP---FLL 112
Query: 398 VGNKVD 403
VG ++D
Sbjct: 113 VGTQID 118
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.0 bits (70), Expect = 0.29
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
+A+ G T GKT+L+ +
Sbjct: 64 MLAITGSTGSGKTSLLMLI 82
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.3 bits (67), Expect = 0.30
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 17/172 (9%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V ++G GK++L+ N+ L T L L + I +
Sbjct: 9 VILLGDGGVGKSSLMNRYVT-------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 61
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
T ++ + + E + + +++E +++
Sbjct: 62 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 121
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILK 440
GNK+D E SA T +A E+ +L
Sbjct: 122 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 30.7 bits (69), Expect = 0.32
Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 39/181 (21%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
V G GKTTL+K ++ + + + + + + +I ++
Sbjct: 29 VVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKV---KGKIFFL------- 75
Query: 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLV 397
P ++ P K+++ED + A ++ V V+ K + + L+ +E+ +
Sbjct: 76 --PEEIIVPRKISVEDYLKAVASLYGVKVN-------KNEIMDALESVEVLDL------- 119
Query: 398 VGNKVDAVPPGE--------RVTEEYDLLISATRGTGL-AQLKEKVQDMILKATGRKNIT 448
K+ + G + ++ + + K KV IL+ K I
Sbjct: 120 -KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 449 M 449
+
Sbjct: 179 I 179
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.8 bits (68), Expect = 0.33
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 277 PTVAVVGYTNCGKTTLIKALT 297
P V+V+G+ + GKTTL+ +
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIR 26
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 30.7 bits (69), Expect = 0.34
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
+ +VG + GK+TL K +
Sbjct: 31 VIGIVGRSGSGKSTLTKLI 49
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 30.6 bits (68), Expect = 0.35
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 277 PTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTT 316
P +AVVG + GK+++++ D L PR T
Sbjct: 27 PQIAVVGGQSAGKSSVLENFVGRDFL-PRGSGIVTRRPLV 65
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 30.5 bits (69), Expect = 0.36
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
TVA VG + GK+TLI +
Sbjct: 46 TVAFVGMSGGGKSTLINLI 64
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 30.7 bits (69), Expect = 0.36
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 17/113 (15%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
V VG + CGK+TL++ + L + P +
Sbjct: 28 FVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGM-------- 76
Query: 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK 390
+ L P E + + ++ Q V++ + L+L
Sbjct: 77 VFQSYALYPHLSVAE------NMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 123
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.37
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 9/136 (6%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ V+G +N GKT L + R++I DT G
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ + + ++ V D++N E + L I ++V
Sbjct: 65 RKSMVQHYY-------RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI--PRILV 115
Query: 399 GNKVDAVPPGERVTEE 414
GNK D + T+
Sbjct: 116 GNKCDLRSAIQVPTDL 131
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 30.6 bits (69), Expect = 0.38
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
A+VG GK+T+ L
Sbjct: 42 VTALVGPNGSGKSTVAALL 60
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.1 bits (66), Expect = 0.44
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
+ VVG GK+++I+
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKG 25
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.9 bits (66), Expect = 0.44
Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 27/169 (15%)
Query: 279 VAVVGYTNCGKTTLIKALTDD---DSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGF 335
+ +G + GKT+LI D ++ + E F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 336 ISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHV 395
S IP+ + + ++ + + Q + +D+ + +
Sbjct: 63 RSLIPSYIRDSA----------AAVVVYDITNVNSFQQTTKWIDDVRTERGSD----VII 108
Query: 396 LVVGNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKV 434
++VGNK D + EE + SA G + QL +V
Sbjct: 109 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 157
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.8 bits (66), Expect = 0.44
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNR-LRILYVDTIG 334
+ ++G GKT L++ T P +D + +++ DT G
Sbjct: 8 IVLIGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.0 bits (66), Expect = 0.46
Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 21/172 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ VVG GK+ L + D T + L +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE- 65
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
E + + + V +++ + + Q L ++++ V++V
Sbjct: 66 ------EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFT--QILRVKDRDDFPVVLV 117
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILK 440
GNK D + E SA + + E++ + K
Sbjct: 118 GNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 30.2 bits (68), Expect = 0.49
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
TVA+VG + GK+T+ +
Sbjct: 43 TVALVGRSGSGKSTIASLI 61
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 29.5 bits (65), Expect = 0.51
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 21/172 (12%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V ++G GKT+L+ ++ +T + R+ + DT G
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE-- 63
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ ++ I V D+++ D Q+ ++ ++ L + +V
Sbjct: 64 ------RFHALGPIYYRDSNGAILVYDITDEDSFQKVKN---WVKELRKMLGNEICLCIV 114
Query: 399 GNKVDAVPPGERVTEEYDLL----------ISATRGTGLAQLKEKVQDMILK 440
GNK+D +E + SA + G+ +L + +++
Sbjct: 115 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.9 bits (67), Expect = 0.52
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
+ ++G + CGKTT ++ + L ++ + I +
Sbjct: 31 FMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVF 87
Query: 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEK 390
L P + D I + + + Q V E + L L E
Sbjct: 88 QSYA--LYPHM------TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL 132
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.9 bits (66), Expect = 0.54
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 30/182 (16%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ +G + GKTT + TD+ F +TT + + S
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNK--------FNPKFITTVGIDFREKRVVYNAQGPNGSSG 59
Query: 339 IPTTLLEPFKVTLEDAML----------ADIIIHVVDVSNPDYLQQKQHVDETLQHLELE 388
+ T A + + D+++ ++ LQ
Sbjct: 60 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 119
Query: 389 EKILEHVLVVGNKVDAVPP-------GERVTEEYDLL---ISATRGTGLAQLKEKVQDMI 438
E ++++GNK D + ++Y + SA G + + E + D+I
Sbjct: 120 ENP--DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177
Query: 439 LK 440
+K
Sbjct: 178 MK 179
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 29.5 bits (65), Expect = 0.54
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 255 KALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDS 301
K L+K+ G +EM + ++G GKTT++ L S
Sbjct: 2 KVLSKIFGNKEM-----------RILMLGLDAAGKTTILYKLKLGQS 37
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 29.2 bits (64), Expect = 0.73
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+ ++G GK++++ +D
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSND 27
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.8 bits (63), Expect = 0.92
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
V ++G T GK++++ +D
Sbjct: 7 VCLLGDTGVGKSSIMWRFVED 27
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (63), Expect = 0.94
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 18/172 (10%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
V ++G GK+TL + + E L + + +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGV------HDSMDSDCEVLGEDTYERTLMVDGESATIILLD 59
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ E + + D + V +++ ++ + L+ E I +++V
Sbjct: 60 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI--PIILV 117
Query: 399 GNKVDAVPPGERVTEEYD----------LLISATRGTGLAQLKEKVQDMILK 440
GNK D V E E + SA + +L E + +
Sbjct: 118 GNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.9 bits (63), Expect = 0.96
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
+A++GY + GK++L +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEG 27
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.4 bits (65), Expect = 0.96
Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 43/222 (19%)
Query: 266 MMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLP--- 322
+ + V G GK+T ++A +D ++
Sbjct: 44 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG 103
Query: 323 --NRLRILYVDTIGFISNIPT-------------------------TLLEPFKVTLEDAM 355
R+ L FI +P+ ++E V +
Sbjct: 104 DKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE 163
Query: 356 LADIIIHVVDVSNPDYLQQKQHVDETL-----------QHLELEEKILEHVLVVGNKVDA 404
+A ++ + + Q + + L + + + + +
Sbjct: 164 VARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHI 223
Query: 405 VPPGERVTEEYDLLISATRGTGLAQLKEKVQDMI--LKATGR 444
+ + L SA G+ ++ + D L A+GR
Sbjct: 224 LRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGR 265
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.97
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 22/179 (12%)
Query: 272 QRQKFPTVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVD 331
++K+ + VVG GK+ L F T D + ++
Sbjct: 2 MQEKY-RLVVVGGGGVGKSALTIQFIQSY--------FVT-DYDPTIEDSYTKQCVIDDR 51
Query: 332 TIGFISNIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKI 391
E + + + + V V++ ++ Q L ++++
Sbjct: 52 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQR--QILRVKDRD 109
Query: 392 LEHVLVVGNKVDAVPPGERVTEEYD----------LLISATRGTGLAQLKEKVQDMILK 440
++++GNK D + EE + SA + Q ++ +I K
Sbjct: 110 EFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.9 bits (63), Expect = 1.00
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 12/125 (9%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFISN 338
+ VVG + CGKT L+ D T+ + RI S
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 61
Query: 339 IPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEHVLVV 398
+ +D ++ D+S P+ L + +L+V
Sbjct: 62 YYDNVRPLSY------PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLV 112
Query: 399 GNKVD 403
G K D
Sbjct: 113 GCKSD 117
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 356 LADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILE-HVLVVGNKVDAVPP 407
L DI+ +VD P + ++ +E+ + +++ NK D
Sbjct: 15 LIDIVYELVDARIP----------MSSRNPMIEDILKNKPRIMLLNKADKADA 57
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 29.0 bits (64), Expect = 1.1
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM 320
+ V+G+ + GK+TL+ L D + + + G
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGK 47
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 1.2
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+A+ G GK+ L+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKR 26
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 1.2
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
+ ++G + GK++L+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKG 29
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 29.0 bits (65), Expect = 1.3
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
+ ++G + CGKTT ++ +
Sbjct: 34 FLVLLGPSGCGKTTTLRMIA 53
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 1.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+ +VG GKTT +K +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGE 27
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.5 bits (63), Expect = 1.5
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 278 TVAVVGYTNCGKTTLIKAL 296
++G + GKTT ++ +
Sbjct: 33 RFGILGPSGAGKTTFMRII 51
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 1.5
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
V ++G GK+ L + +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVE 25
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.4 bits (63), Expect = 1.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
+ +VG GK+TL+ +
Sbjct: 27 ILHLVGPNGAGKSTLLARMA 46
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.5 bits (63), Expect = 1.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
++G T GKT ++ +
Sbjct: 28 YFVILGPTGAGKTLFLELIA 47
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 1.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 279 VAVVGYTNCGKTTLIKALT 297
+ + G GKTTL+K +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.4 bits (62), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
VVG GKT L+ + +D
Sbjct: 12 CVVVGDGAVGKTCLLMSYAND 32
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.1 bits (61), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
+ +VG CGKT L+ + D
Sbjct: 5 LVIVGDGACGKTCLLIVNSKD 25
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.3 bits (62), Expect = 1.8
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVP 304
+ ++G GK+T +K + P
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHGQDP 30
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.1 bits (61), Expect = 1.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 261 KGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
+ +R + + + TV + G + GKTT+ AL
Sbjct: 4 RNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMAL 39
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 28.2 bits (62), Expect = 1.9
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 265 EMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSL 302
+ + + + T G + GK++L+ A++ + L
Sbjct: 86 DSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGL 123
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 173
Score = 27.7 bits (61), Expect = 2.2
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 6 FKTIRDEAQTGALGTDHQVFVIQPFIKWGKKMKRNTTRDFMLAESKALVKFSDNSQDDLE 65
+K E AL + + QP + + D ++ ++ SD +
Sbjct: 65 WKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIG 124
Query: 66 ESDEFKTIRDEAQTGALGTDHQVFVVQPFIKWGKKM 101
+ + + + + +Q F G
Sbjct: 125 DI--LIAYKK--RINQIAQHDSINYIQVFKNQGASA 156
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 28.1 bits (62), Expect = 2.3
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
++G T GK+ ++ +
Sbjct: 26 YCVLLGPTGAGKSVFLELIA 45
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.7 bits (60), Expect = 2.5
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 279 VAVVGYTNCGKTTLIKALTDD 299
+ VVG GK+ L
Sbjct: 7 LVVVGDGGVGKSALTIQFFQK 27
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 2.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 248 EREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
+ E +L L E+++ KK + + G GKT+L A+
Sbjct: 10 QFENRLNDNL------EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAI 52
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.9 bits (62), Expect = 2.8
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 278 TVAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGMLPNRLRILYVDTIGFIS 337
V+++G + GK+T++ + L + +D + + L + D IGF+
Sbjct: 33 FVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVF 89
Query: 338 NIPTTLLEPFKVTLEDAMLADIIIHVVDVSNPDYLQQKQHVDETLQHLELEEKILEH 394
L P LE+ L I + +S + +++ E L+ ELEE+ H
Sbjct: 90 QQFN--LIPLLTALENVELPLIFKYRGAMSGEE---RRKRALECLKMAELEERFANH 141
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 27.9 bits (61), Expect = 2.9
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPRNQLFATLDVTTHEGM 320
+ +G+ + GK+TL + +V + + G
Sbjct: 27 IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGK 68
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 27.6 bits (60), Expect = 3.2
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 279 VAVVGYTNCGKTTLIKALT 297
V VG GKTTL
Sbjct: 3 VVFVGTAGSGKTTLTGEFG 21
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 27.3 bits (60), Expect = 3.9
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
++G GKTT ++ ++
Sbjct: 30 IFGLIGPNGAGKTTTLRIIS 49
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.9 bits (58), Expect = 4.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+ V+G GK+ L
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGI 27
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.9 bits (58), Expect = 4.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+ V+G GK++LI
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGS 29
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.2 bits (60), Expect = 4.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
++G GK+TLI +T
Sbjct: 32 VTLIIGPNGSGKSTLINVIT 51
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 4.5
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 251 QKLKKALNKLKGQREM---MRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
KLK L + ++ K F + G GKTT +
Sbjct: 24 MKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 4.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 279 VAVVGYTNCGKTTLIKALTDDD 300
+ ++G GK+T IK +
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIH 26
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.2 bits (60), Expect = 4.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
V ++G GKTT + A+
Sbjct: 34 IVTLIGANGAGKTTTLSAIA 53
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.9 bits (58), Expect = 4.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 277 PTV-AVVGYTNCGKTTLIKALT 297
PT+ +VG GKT + K LT
Sbjct: 2 PTLIVMVGLPARGKTYISKKLT 23
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.0 bits (58), Expect = 5.6
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 278 TVAVVGYTNCGKTTLIKALT 297
++G GK++L+ A+
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 6.1
Identities = 21/189 (11%), Positives = 54/189 (28%), Gaps = 27/189 (14%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSL--------VPRNQLFATLDVTTHEGMLPNRLRILYV 330
+ ++G GK+T++K + L + + + +
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE 64
Query: 331 DTIGFISNIPTT-----------------LLEPFKVTLEDAMLADIIIHVVDVSNPDYLQ 373
I + + ++ F + D I + + +
Sbjct: 65 GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE 124
Query: 374 QKQHVDETLQHLEL--EEKILEHVLVVGNKVDAVPPGERVTEEYDLLISATRGTGLAQLK 431
+ + T+ + E E + + + + + E Y AT + +
Sbjct: 125 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 184
Query: 432 EKVQDMILK 440
+ V D+I+K
Sbjct: 185 DAVTDVIIK 193
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.6 bits (57), Expect = 6.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 279 VAVVGYTNCGKTTLIKALTD 298
VA++G + GK+ L+ L
Sbjct: 10 VAILGGESSGKSVLVNKLAA 29
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.4 bits (58), Expect = 7.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 274 QKFPTVAVVGYTNCGKTTLIKALTD 298
+K P ++V G + G +T+
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.1 bits (56), Expect = 7.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 277 PTVAVVGYTNCGKTTLIKAL 296
P +VG GK+T+ + L
Sbjct: 2 PKAVLVGLPGSGKSTIGRRL 21
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 8.7
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 263 QREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
++E+ + K R V+G GK+++IK
Sbjct: 18 EKEIEKLKGLRAPI--TLVLGLRRTGKSSIIKIG 49
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.3 bits (56), Expect = 9.1
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 246 LMEREQKLKKALNKLKGQREMMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
L R + + ++ +G GKTTL K
Sbjct: 18 LRVRRGEAEALARIYL--NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFT 66
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.4 bits (57), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 9/31 (29%)
Query: 266 MMRNKKQRQKFPTVAVVGYTNCGKTTLIKAL 296
M+R VA+VG+ GKTTL +AL
Sbjct: 1 MIRT---------VALVGHAGSGKTTLTEAL 22
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 26.2 bits (57), Expect = 9.8
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 265 EMMRNKKQRQKFPTVAVVGYTNCGKTTLIKALTDDDSL 302
+ K+ K + G + GK++L+ A+ L
Sbjct: 84 MGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKL 121
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 26.3 bits (56), Expect = 9.9
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 277 PTVAVVGYTNCGKTTLIKALT 297
++G GK++L+ A+
Sbjct: 24 GINLIIGQNGSGKSSLLDAIL 44
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 279 VAVVGYTNCGKTTLIKALTDDDSLVPR 305
V + G + GK+TL+K L + S +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFG 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.377
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,788,415
Number of extensions: 83490
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 155
Length of query: 505
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 416
Effective length of database: 1,185,626
Effective search space: 493220416
Effective search space used: 493220416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)