BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5002
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
++ N ICVDW + S Y A ++ +G +A ++ ++ + Y H++GHS
Sbjct: 95 FKVESVNCICVDWKS-GSRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHS 153
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL-- 267
LG+H G AG +G +GRITGLDPA P F RLD +DA FVD+IHT
Sbjct: 154 LGSHAAGEAGRR-TNGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIP 212
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCG-------------W----DIGTCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC W D C+H RSY ++
Sbjct: 213 NLGFGMSQTAGHLDFFPNGGKEM-PGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKYY 271
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHC-KGSVEDMILMGEHVN-----TSARGK-YYLMTA 359
T+SI GF C S+SD+ C S E MG + + T G+ +YL T
Sbjct: 272 TDSILNPDGFAGFSCASYSDFTANKCFPCSSEGCPQMGHYADRFPGRTKGVGQLFYLNTG 331
Query: 360 SSKPYALGRY 369
+ +A RY
Sbjct: 332 DASNFARWRY 341
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 16 LDPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT G Q GH+DF+PNGG +
Sbjct: 176 LDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEM 235
Query: 69 QPGCGWDIVHAYTTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHIYQTKIGFYARQCN 128
PGC +++ + G + D + Y T +L+ GF C
Sbjct: 236 -PGCQKNVL-SQIVDIDGIWQGTRDFAACNHLRSYKYYTDSILNPD------GFAGFSCA 287
Query: 129 SWSDYKKGHC 138
S+SD+ C
Sbjct: 288 SYSDFTANKC 297
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 118/250 (47%), Gaps = 34/250 (13%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
++ N ICVDW S Y A + + +G +A ++ + GY HL+GHS
Sbjct: 96 FQVEKVNCICVDWRR-GSRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHS 154
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSS-NITGRLDSTDATFVDIIHTCGG---- 265
LGAHV G AG + G +GRITGLDPA P F RLD +DA FVD+IHT
Sbjct: 155 LGAHVVGEAGRRL-EGHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIP 213
Query: 266 YLGY--YQPCGHVDFYPNGGTFIQPGCGWDI------------GT-----CSHTRSYMFF 306
YLG+ Q GH+DF+PNGG + PGC +I GT C+H RSY ++
Sbjct: 214 YLGFGMSQKVGHLDFFPNGGKEM-PGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYY 272
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSARGK-------YYLMTA 359
SI GF C+S+ +++ C E+ H GK YL T
Sbjct: 273 ASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHYADQFEGKTATVEQTVYLNTG 332
Query: 360 SSKPYALGRY 369
S + RY
Sbjct: 333 DSGNFTRWRY 342
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 16 LDPALPLFSS-NITGRLDSTDATFVDIIHTCGG----YLGY--YQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT YLG+ Q GH+DF+PNGG +
Sbjct: 177 LDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEM 236
Query: 69 QPGCGWDIV 77
PGC +I+
Sbjct: 237 -PGCQKNIL 244
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 118/250 (47%), Gaps = 34/250 (13%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
++ N ICVDW S Y A I+ +G +A + ++ GY H++GHS
Sbjct: 95 FKVESVNCICVDWKG-GSRTGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVHVIGHS 153
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL-- 267
LGAH G AG +G IGRITGLDPA P F RLD +DA FVD+IHT G +
Sbjct: 154 LGAHAAGEAGRR-TNGTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVP 212
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCG-------------W----DIGTCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC W D C+H RSY ++
Sbjct: 213 NLGFGMSQVVGHLDFFPNGGVEM-PGCKKNILSQIVDIDGIWEGTRDFAACNHLRSYKYY 271
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHC----KGSVEDMILMGEHV--NTSARG-KYYLMTA 359
T+SI GF C S++ + C G M + T+ G K+YL T
Sbjct: 272 TDSIVNPDGFAGFPCASYNVFTANKCFPCPSGGCPQMGHYADRYPGKTNDVGQKFYLDTG 331
Query: 360 SSKPYALGRY 369
+ +A RY
Sbjct: 332 DASNFARWRY 341
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 16 LDPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT G + G Q GH+DF+PNGG +
Sbjct: 176 LDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEM 235
Query: 69 QPGCGWDIV 77
PGC +I+
Sbjct: 236 -PGCKKNIL 243
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 115/250 (46%), Gaps = 35/250 (14%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
E+ + N ICVDW S Y A ++ +G +A ML + Y HL+GHS
Sbjct: 121 FEVEEVNCICVDWKK-GSQATYTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHS 179
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL-- 267
LGAHV G AG + RITGLDP F S RLD +DA FVD+IHT L
Sbjct: 180 LGAHVAGEAGSKTP--GLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIP 237
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCG-------------W----DIGTCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC W D C+H RSY ++
Sbjct: 238 FLGFGTNQQMGHLDFFPNGGESM-PGCKKNALSQIVDLDGIWAGTRDFVACNHLRSYKYY 296
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHCKGSVED-MILMGEHVN------TSARGKYYLMTA 359
ESI GF A C S+ ++ C + MG + + + + K++L T
Sbjct: 297 LESILNPDGFAAYPCTSYKSFESDKCFPCPDQGCPQMGHYADKFAGRTSEEQQKFFLNTG 356
Query: 360 SSKPYALGRY 369
+ +A RY
Sbjct: 357 EASNFARWRY 366
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 6 RKPTLIQGGRLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL------GYYQPCGHV 58
+ P L + LDP F S RLD +DA FVD+IHT L G Q GH+
Sbjct: 191 KTPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHL 250
Query: 59 DFYPNGGTFIQPGC 72
DF+PNGG + PGC
Sbjct: 251 DFFPNGGESM-PGC 263
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 115/250 (46%), Gaps = 35/250 (14%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
++ + N ICVDW S Y A ++ +G +A ML+ + Y L+GHS
Sbjct: 96 FKVEEVNCICVDWKK-GSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHS 154
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL-- 267
LGAHV G AG +GRITGLDP F RLD TDA FVD+IHT L
Sbjct: 155 LGAHVAGEAGSRTP--GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIP 212
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCG-------------W----DIGTCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC W D C+H RSY ++
Sbjct: 213 FLGFGTSQQMGHLDFFPNGGEEM-PGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYY 271
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHCKGSVED-MILMGEHVNTSA------RGKYYLMTA 359
+ESI GF + C S+ ++ C + MG + + A KY+L T
Sbjct: 272 SESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAVKTSDETQKYFLNTG 331
Query: 360 SSKPYALGRY 369
S +A RY
Sbjct: 332 DSSNFARWRY 341
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 6 RKPTLIQGGRLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL------GYYQPCGHV 58
R P L + LDP F RLD TDA FVD+IHT L G Q GH+
Sbjct: 166 RTPGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHL 225
Query: 59 DFYPNGGTFIQPGC 72
DF+PNGG + PGC
Sbjct: 226 DFFPNGGEEM-PGC 238
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 102/189 (53%), Gaps = 11/189 (5%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
++ N ICVDW S Y A I+ +G +A ++ + + Y H++GHS
Sbjct: 96 FQVEKVNCICVDWKG-GSKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHS 154
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL-- 267
LGAH G AG+ + +G +GRITGLDPA P F RLD +DA FVD+IHT +
Sbjct: 155 LGAHTAGEAGKRL-NGLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILP 213
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCGWDIGTCSHTRSYMFFTESIRTKIGFYARQCNS 323
G Q GH+DF+PNGG + PGC I +C+H RS ++ SI GF C S
Sbjct: 214 SLGFGMSQKVGHMDFFPNGGKDM-PGCKTGI-SCNHHRSIEYYHSSILNPEGFLGYPCAS 271
Query: 324 WSDYKKGHC 332
+ ++++ C
Sbjct: 272 YDEFQESGC 280
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 16 LDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT + G Q GH+DF+PNGG +
Sbjct: 177 LDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDM 236
Query: 69 QPGC 72
PGC
Sbjct: 237 -PGC 239
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 27/206 (13%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
L++ N I VDWS+ A Y A I+ +G A ++ + Y+ H++GHS
Sbjct: 96 LQVETTNCISVDWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHS 154
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFS-SNITGRLDSTDATFVDIIHTCGGYL-- 267
LGAH G AG + G++GR+TGLDPA P F ++ RLD +DA FVD+IHT +
Sbjct: 155 LGAHTAGEAGRRL-EGRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLP 213
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGC-----------------GWDIGTCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC D C+H +S+ ++
Sbjct: 214 SLGFGMSQKVGHMDFFPNGGKQM-PGCKRSSFSTFIDINGIWQGAQDYLACNHLKSFEYY 272
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHC 332
+ SI GF A C+S+ +++ C
Sbjct: 273 SSSILNPDGFLAYPCDSYDKFQENGC 298
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 16 LDPALPLFS-SNITGRLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F ++ RLD +DA FVD+IHT + G Q GH+DF+PNGG +
Sbjct: 177 LDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQM 236
Query: 69 QPGC 72
PGC
Sbjct: 237 -PGC 239
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 115/255 (45%), Gaps = 34/255 (13%)
Query: 146 ILMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFH 205
I ++ N ICVDW S Y A I+ +G +A + ++ + GY H
Sbjct: 90 ICKNLFKVESVNCICVDWKG-GSRTGYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNVH 148
Query: 206 LVGHSLGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNIT-GRLDSTDATFVDIIHTCG 264
++GHSLG+H G AG +G I RITGLDPA P F RLD +DA FVD+IHT
Sbjct: 149 VIGHSLGSHAAGEAGRR-TNGTIERITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDA 207
Query: 265 GYL------GYYQPCGHVDFYPNGGTFIQPGCG-------------W----DIGTCSHTR 301
+ G Q GH+DF+PNGG + PGC W D C+H R
Sbjct: 208 APIIPNLGFGMSQTVGHLDFFPNGGKQM-PGCQKNILSQIVDIDGIWEGTRDFVACNHLR 266
Query: 302 SYMFFTESIRTKIGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSARGK-------Y 354
SY ++ +SI GF C+S++ + C + H GK +
Sbjct: 267 SYKYYADSILNPDGFAGFPCDSYNVFTANKCFPCPSEGCPQMGHYADRFPGKTNGVSQVF 326
Query: 355 YLMTASSKPYALGRY 369
YL T + +A RY
Sbjct: 327 YLNTGDASNFARWRY 341
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 16 LDPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT + G Q GH+DF+PNGG +
Sbjct: 176 LDPAEPCFQGTPELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQM 235
Query: 69 QPGCGWDIV 77
PGC +I+
Sbjct: 236 -PGCQKNIL 243
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 128/271 (47%), Gaps = 38/271 (14%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
E+ N ICVDW + S +Y A I+ +G A ++ + GY H++GHS
Sbjct: 96 FEVEKVNCICVDWRH-GSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHS 154
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL-- 267
LGAH A G++GRITGLDPA P F RLD +DA FVD+IHT +
Sbjct: 155 LGAHTAAEA-GRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVP 213
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCG-------------WD-IG---TCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC W+ IG +C+H RS+ ++
Sbjct: 214 SLGFGMSQKVGHLDFFPNGGKEM-PGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEYY 272
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHC-KGSVEDMILMGEHVN------TSARGKYYLMTA 359
+ S+ GF C S+ ++++ C E MG + + ++ ++L T
Sbjct: 273 SSSVLNPDGFLGYPCASYDEFQESKCFPCPAEGCPKMGHYADQFKGKTSAVEQTFFLNTG 332
Query: 360 SSKPYALGRYFPQPKHDTFPSSRGQLRGHLR 390
S + RY K S + ++ G++R
Sbjct: 333 ESGQFTSWRY----KVSVTLSGKEKVNGYIR 359
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 33/139 (23%)
Query: 16 LDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT + G Q GH+DF+PNGG +
Sbjct: 177 LDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEM 236
Query: 69 QPGCGWDIVHAYTTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHI-----YQTKI--- 120
PGC +++ T DG I+ + GFV H+ Y + +
Sbjct: 237 -PGCKKNVLSTITDI---------DG-------IWEGIGGFVSCNHLRSFEYYSSSVLNP 279
Query: 121 -GFYARQCNSWSDYKKGHC 138
GF C S+ ++++ C
Sbjct: 280 DGFLGYPCASYDEFQESKC 298
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 128/271 (47%), Gaps = 38/271 (14%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
E+ N ICVDW + S +Y A I+ +G A ++ + GY H++GHS
Sbjct: 98 FEVEKVNCICVDWRH-GSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHS 156
Query: 211 LGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL-- 267
LGAH A G++GRITGLDPA P F RLD +DA FVD+IHT +
Sbjct: 157 LGAHTAAEA-GRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVP 215
Query: 268 ----GYYQPCGHVDFYPNGGTFIQPGCG-------------WD-IG---TCSHTRSYMFF 306
G Q GH+DF+PNGG + PGC W+ IG +C+H RS+ ++
Sbjct: 216 SLGFGMSQKVGHLDFFPNGGKEM-PGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEYY 274
Query: 307 TESIRTKIGFYARQCNSWSDYKKGHC-KGSVEDMILMGEHVN------TSARGKYYLMTA 359
+ S+ GF C S+ ++++ C E MG + + ++ ++L T
Sbjct: 275 SSSVLNPDGFLGYPCASYDEFQESKCFPCPAEGCPKMGHYADQFKGKTSAVEQTFFLNTG 334
Query: 360 SSKPYALGRYFPQPKHDTFPSSRGQLRGHLR 390
S + RY K S + ++ G++R
Sbjct: 335 ESGNFTSWRY----KVSVTLSGKEKVNGYIR 361
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 33/139 (23%)
Query: 16 LDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFI 68
LDPA P F RLD +DA FVD+IHT + G Q GH+DF+PNGG +
Sbjct: 179 LDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEM 238
Query: 69 QPGCGWDIVHAYTTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHI-----YQTKI--- 120
PGC +++ T DG I+ + GFV H+ Y + +
Sbjct: 239 -PGCKKNVLSTITDI---------DG-------IWEGIGGFVSCNHLRSFEYYSSSVLNP 281
Query: 121 -GFYARQCNSWSDYKKGHC 138
GF C S+ ++++ C
Sbjct: 282 DGFLGYPCASYDEFQESKC 300
>pdb|2A75|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
pdb|2AGS|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2-Keto-3-
Deoxy-D-Glycero-D-Galacto-2,3-Difluoro-Nononic Acid
(2,3- Difluoro-Kdn)
pdb|2FHR|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
Length = 652
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 314 IGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALGRYFP 371
+G + + NSW+ ++ G E ++++GE ++A GK + KP +L FP
Sbjct: 125 VGSFNKTRNSWTQHRDGS---DWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFP 179
>pdb|1MZ5|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1MZ6|A Chain A, Trypanosoma Rangeli Sialidase In Complex With The
Inhibitor Dana
Length = 638
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 314 IGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALGRYFP 371
+G + + NSW+ ++ G E ++++GE ++A GK + KP +L FP
Sbjct: 111 VGSFNKTRNSWTQHRDGS---DWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFP 165
>pdb|1N1S|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1N1T|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana At 1.6
A
pdb|1N1V|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana
pdb|1N1Y|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Sialic Acid
Length = 641
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 314 IGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALGRYFP 371
+G + + NSW+ ++ G E ++++GE ++A GK + KP +L FP
Sbjct: 114 VGSFNKTRNSWTQHRDGS---DWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFP 168
>pdb|3UTN|X Chain X, Crystal Structure Of Tum1 Protein From Saccharomyces
Cerevisiae
Length = 327
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 279 YPNGGTFIQPGCGWDIGTCSHTRSYMF--FTESIRTKIGFYARQCNSWSDYKKGHCKGSV 336
Y G F P C W +G H + Y+ F + K + + ++S Y K H + S
Sbjct: 119 YDRVGNFSSPRCAWTLGVMGHPKVYLLNNFNQYREFKYPLDSSKVAAFSPYPKSHYESSE 178
Query: 337 ----EDMILMGEHVNTSARGKYYLMTASSKPYALGRY---FPQPKHD 376
++++ E G+ + +LGR+ P+P+ D
Sbjct: 179 SFQDKEIVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSD 225
>pdb|2Y9W|A Chain A, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9W|B Chain B, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9X|A Chain A, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|B Chain B, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|C Chain C, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|D Chain D, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
Length = 391
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 196 TTGYDWCMFHLVGHSLGAHVCGIAG-ENIAHGKIGRITGLDPALP 239
T Y W +F G +GAH + N H IGR LDP +P
Sbjct: 232 TKNYTWELFSNHGAVVGAHANSLEMVHNTVHFLIGRDPTLDPLVP 276
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 140 GSVEDMILMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGY 199
GS++++ ++A ++D+NII VD N + P+ + + Q L D L ++
Sbjct: 27 GSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYP--AMAQDLVDTLDALQ----I 80
Query: 200 DWCMFHLVGHSLGAHVCGIAGENIAHGKIGRITGLDPA 237
D F +GHS+G +A +A +I ++ +D A
Sbjct: 81 DKATF--IGHSMGGKAV-MALTALAPDRIDKLVAIDIA 115
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 314 IGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALGRYFP 371
+G + + N W+ ++ G E ++++GE ++A GK + KP +L FP
Sbjct: 114 VGSFNKTRNYWTQHRDGS---DWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFP 168
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 188 DMLTTIERTTGYDWCMFHLVGHSLGAHVCGIAGE 221
D+ TTI TG + M L+G LG +V + G+
Sbjct: 105 DLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGD 138
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 188 DMLTTIERTTGYDWCMFHLVGHSLGAHVCGIAGE 221
D+ TTI TG + M L+G LG +V + G+
Sbjct: 105 DLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGD 138
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 188 DMLTTIERTTGYDWCMFHLVGHSLGAHVCGIAGE 221
D+ TTI TG + M L+G LG +V + G+
Sbjct: 105 DLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGD 138
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 188 DMLTTIERTTGYDWCMFHLVGHSLGAHVCGIAGE 221
D+ TTI TG + M L+G LG +V + G+
Sbjct: 105 DLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGD 138
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 188 DMLTTIERTTGYDWCMFHLVGHSLGAHVCGIAGE 221
D+ TTI TG + M L+G LG +V + G+
Sbjct: 105 DLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGD 138
>pdb|3AZW|A Chain A, Crystal Structure Of The Receptor Binding Domain
pdb|3AZW|B Chain B, Crystal Structure Of The Receptor Binding Domain
Length = 438
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 314 IGFYARQCNSWSDYKKGH------CKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALG 367
I F R+ N+ D+ +G+ +G+ D + GE+V Y+ T +K Y+LG
Sbjct: 272 IVFNTRKNNN--DFNEGYKIIIKRIRGNTNDTRVRGENV------LYFNTTIDNKQYSLG 323
Query: 368 RYFPQPKHDTFPSSRGQLRGHLRTYRKY 395
Y P T G L + RKY
Sbjct: 324 MYKPSRNLGTDLVPLGALDQPMDEIRKY 351
>pdb|3N7L|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype DC VPI
5993 Binding Domain
Length = 424
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 314 IGFYARQCNSWSDYKKGH------CKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALG 367
I F R+ N+ D+ +G+ +G+ D + GE+V Y+ T +K Y+LG
Sbjct: 266 IVFNTRKNNN--DFNEGYKIIIKRIRGNTNDTRVRGENV------LYFNTTIDNKQYSLG 317
Query: 368 RYFPQPKHDTFPSSRGQLRGHLRTYRKY 395
Y P T G L + RKY
Sbjct: 318 MYKPSRNLGTDLVPLGALDQPMDEIRKY 345
>pdb|3N7M|A Chain A, Crystal Structure Of W1252a Mutant Of Hcr DC VPI 5995
Length = 424
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 314 IGFYARQCNSWSDYKKGH------CKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALG 367
I F R+ N+ D+ +G+ +G+ D + GE+V Y+ T +K Y+LG
Sbjct: 266 IVFNTRKNNN--DFNEGYKIIIKRIRGNTNDTRVRGENV------LYFNTTIDNKQYSLG 317
Query: 368 RYFPQPKHDTFPSSRGQLRGHLRTYRKY 395
Y P T G L + RKY
Sbjct: 318 MYKPSRNLGTDLVPLGALDQPMDEIRKY 345
>pdb|4FVV|A Chain A, Crystal Structure Of HcrD-Sa-Gbl1C
pdb|4FVV|B Chain B, Crystal Structure Of HcrD-Sa-Gbl1C
Length = 423
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 314 IGFYARQCNSWSDYKKGH------CKGSVEDMILMGEHVNTSARGKYYLMTASSKPYALG 367
I F R+ N+ D+ +G+ +G+ D + GE+V Y+ T +K Y+LG
Sbjct: 266 IVFNTRKNNN--DFNEGYKIIIKRIRGNTNDTRVRGENV------LYFNTTIDNKQYSLG 317
Query: 368 RYFPQPKHDTFPSSRGQLRGHLRTYRKY 395
Y P T G L + RKY
Sbjct: 318 MYKPSRNLGTDLVPLGALDQPMDEIRKY 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,166,457
Number of Sequences: 62578
Number of extensions: 631795
Number of successful extensions: 1192
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 57
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)