RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5002
(417 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 282 bits (725), Expect = 8e-94
Identities = 105/228 (46%), Positives = 131/228 (57%), Gaps = 11/228 (4%)
Query: 140 GSVEDMILMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGY 199
+ D+ AYL DYN+I VDW A+ YP A + +G LA L + TG
Sbjct: 52 SWISDLRK-AYLSRGDYNVIVVDWGRGANP-NYPQAVNNTRVVGAELAKFLDFLVDNTGL 109
Query: 200 DWCMFHLVGHSLGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDATFVD 258
HL+GHSLGAHV G AG+ + +GK+GRITGLDPA PLFS RLD +DA FVD
Sbjct: 110 SLENVHLIGHSLGAHVAGFAGKRL-NGKLGRITGLDPAGPLFSGADPEDRLDPSDAQFVD 168
Query: 259 IIHTCGGYLGYYQPCGHVDFYPNGGTFIQPGCGWDI-----GTCSHTRSYMFFTESIRTK 313
+IHT GG LG+ QP GH DFYPNGG QPGC DI CSH R+ +F ESI +
Sbjct: 169 VIHTDGGLLGFSQPIGHADFYPNGGRD-QPGCPKDILSSDFVACSHQRAVHYFAESILSP 227
Query: 314 IGFYARQCNSWSDYKKGHCKGSVEDMILMGEHVNTSAR-GKYYLMTAS 360
GF A C+S+ ++ G C + MG H + R GK+YL T +
Sbjct: 228 CGFVAYPCSSYDEFLAGKCFPCGSGCVRMGYHADRFRREGKFYLKTNA 275
Score = 116 bits (294), Expect = 4e-30
Identities = 53/143 (37%), Positives = 67/143 (46%), Gaps = 35/143 (24%)
Query: 16 LDPALPLFSSNITG-RLDSTDATFVDIIHTCGGYLGYYQPCGHVDFYPNGGTFIQPGCGW 74
LDPA PLFS RLD +DA FVD+IHT GG LG+ QP GH DFYPNGG QPGC
Sbjct: 143 LDPAGPLFSGADPEDRLDPSDAQFVDVIHTDGGLLGFSQPIGHADFYPNGGRD-QPGCPK 201
Query: 75 DIVHAYTTQQPGNKEAKNDGQC---RTEEKIYLVLTGFVLSVHIY----QTKIGFYARQC 127
DI+ + + C R +VH + + GF A C
Sbjct: 202 DIL------------SSDFVACSHQR--------------AVHYFAESILSPCGFVAYPC 235
Query: 128 NSWSDYKKGHCKGSVEDMILMAY 150
+S+ ++ G C + M Y
Sbjct: 236 SSYDEFLAGKCFPCGSGCVRMGY 258
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 174 bits (444), Expect = 3e-51
Identities = 90/256 (35%), Positives = 124/256 (48%), Gaps = 27/256 (10%)
Query: 130 WSDYKKGHCKGSVEDMILMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADM 189
++D KG + + DM ++ N+I VDW + ++ Y A ++ +G +A +
Sbjct: 80 FTD--KGQEESWLSDMC-KNLFQVEGVNVIVVDWGSGSTT-FYRQATLNVRVVGAEVAKL 135
Query: 190 LTTIERTTGYDWCMFHLVGHSLGAHVCGIAGENI-AHGKIGRITGLDPALPLF--SSNIT 246
L +E HL+GHSLGAHV G AG K+GRITGLDPA P F + +T
Sbjct: 136 LVELEEELNVSPENVHLIGHSLGAHVAGEAGRRTKGKTKLGRITGLDPAGPYFKGTPELT 195
Query: 247 GRLDSTDATFVDIIHTCGGYLGYY-----QPCGHVDFYPNGGTFIQPGC------GWDIG 295
RLD DA FVD IHT + Q GHVDF+PNGG+ QPGC G
Sbjct: 196 -RLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSE-QPGCQNNVLEGTQFV 253
Query: 296 TCSHTRSYMFFTESIRTKIGFYARQCNSWSDYKKGHCKGSVED-MILMG------EHVNT 348
C+H RS +F ES+ F A C+S+ ++ C G + MG + +
Sbjct: 254 ACAHMRSVRYFAESLLNPRNFPAYPCSSYDEFSNNKCFGCPKGRCPYMGIYADKFDGKTS 313
Query: 349 SARGKYYLMTASSKPY 364
G YYL T S P+
Sbjct: 314 KLEGDYYLNTNSKSPF 329
Score = 76.7 bits (189), Expect = 2e-15
Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 35/136 (25%)
Query: 16 LDPALPLF--SSNITGRLDSTDATFVDIIHTCGGYLGYY-----QPCGHVDFYPNGGTFI 68
LDPA P F + +T RLD DA FVD IHT + Q GHVDF+PNGG+
Sbjct: 181 LDPAGPYFKGTPELT-RLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSE- 238
Query: 69 QPGCGWDIVHAYTTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHIYQTKI----GFYA 124
QPGC ++ E V + SV + + F A
Sbjct: 239 QPGCQNNV----------------------LEGTQFVACAHMRSVRYFAESLLNPRNFPA 276
Query: 125 RQCNSWSDYKKGHCKG 140
C+S+ ++ C G
Sbjct: 277 YPCSSYDEFSNNKCFG 292
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 143 bits (361), Expect = 2e-38
Identities = 100/314 (31%), Positives = 137/314 (43%), Gaps = 57/314 (18%)
Query: 85 PGNKEAKNDGQCRTEEKIYLVLTGFVLSVHIYQTKIGFYARQCNSWSDYKKGHCKGSVED 144
PG ++ D E K ++V+ G+ T G + SW V
Sbjct: 26 PGQPDSIADCNFNHETKTFIVIHGW--------TVTGMF----ESW-----------VPK 62
Query: 145 MILMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMF 204
++ Y N+I VDW + A + YP + K +G+ +A + ++ Y W
Sbjct: 63 LVAALYEREPSANVIVVDWLSRA-QQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNV 121
Query: 205 HLVGHSLGAHVCGIAGENIAHGKIGRITGLDPALPLFS-SNITGRLDSTDATFVDIIHTC 263
HL+G+SLGAHV GIAG H K+ RITGLDPA P F ++ L DA FVD++HT
Sbjct: 122 HLLGYSLGAHVAGIAGSLTKH-KVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHTN 180
Query: 264 -----GGYLGYYQPCGHVDFYPNGGTFIQPGCGWDIGT------------------CSHT 300
+G +P GH+D YPNGGTF QPGC DI CSH
Sbjct: 181 TRGSPDRSIGIQRPVGHIDIYPNGGTF-QPGC--DIQETLLVIAEKGLGNMDQLVKCSHE 237
Query: 301 RSYMFFTES-IRTKIGFYARQCNSWSDYKKGHC----KGSVEDMILMGEHVNTSARGKYY 355
RS F +S + + A +C+S + KG C K + V T K Y
Sbjct: 238 RSIHLFIDSLLNEENPSMAYRCSSKEAFNKGLCLSCRKNRCNKLGYEINKVRTKRSSKMY 297
Query: 356 LMTASSKPYALGRY 369
L T PY + Y
Sbjct: 298 LKTREMMPYKVFHY 311
Score = 65.7 bits (160), Expect = 1e-11
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 16 LDPALPLFS-SNITGRLDSTDATFVDIIHTC-----GGYLGYYQPCGHVDFYPNGGTFIQ 69
LDPA P F ++ L DA FVD++HT +G +P GH+D YPNGGTF Q
Sbjct: 150 LDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGGTF-Q 208
Query: 70 PGCGWDIVHAY-TTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHIYQTKIGFYARQCN 128
PGC DI + G +C E I+L + + + + A +C+
Sbjct: 209 PGC--DIQETLLVIAEKGLGNMDQLVKCSHERSIHLFIDSLLNEEN--PSM----AYRCS 260
Query: 129 SWSDYKKGHC 138
S + KG C
Sbjct: 261 SKEAFNKGLC 270
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 85.2 bits (211), Expect = 9e-20
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 204 FHLVGHSLGAHVCGIAGENIAH---GKIGRITGLDPALPLFSSNITGRLDSTDATFVDII 260
H+ GHSLG + G+AG ++ G++ R+ P ++ RLD +DA FVD I
Sbjct: 30 IHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNAAFAEDRLDPSDALFVDRI 89
Query: 261 HTCGGYLGYYQPC------GHVDFYPNGGTFIQPGC---------------GWDIGTCSH 299
+ P G +FY NGG C G C H
Sbjct: 90 VNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQPGCCKNVLEAVDIDFGNIGLSGNGLCDH 149
Query: 300 TRSY 303
R +
Sbjct: 150 LRYF 153
Score = 47.1 bits (112), Expect = 2e-06
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 16 LDPALPLFSSNITGRLDSTDATFVDIIHTCGGYLGYYQPC------GHVDFYPNGGTFIQ 69
P ++ RLD +DA FVD I + P G +FY NGG
Sbjct: 63 FGPPRVGNAAFAEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQP 122
Query: 70 PGC 72
C
Sbjct: 123 GCC 125
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 38.9 bits (91), Expect = 0.002
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 147 LMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHL 206
L L Y ++ D + P ++++ LA +L + L
Sbjct: 17 LAEALA-AGYRVLAPDLPGHGDSDGPPRTPYSLEDDAADLAALLDALGLGP------VVL 69
Query: 207 VGHSLGAHVCGIAGENIAHGKIGRITGLDPALPLFS 242
VGHSLG V A ++ + + P L
Sbjct: 70 VGHSLGGAVALAAAAR-RPERVAGLVLISPPLRDLE 104
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 32.6 bits (74), Expect = 0.46
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 17 DPALPLFSSNITGRLDSTDATFVDIIHTCGGYLGYYQPCGH--VDFYPNGGTFIQPGCGW 74
DP L++S TG+ ++HT GGY+ Y D+ P + CGW
Sbjct: 276 DPLFLLYTSGSTGKPKG-------VLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGW 328
Query: 75 DIVHAYTTQQP 85
H+Y T P
Sbjct: 329 ITGHSYVTYGP 339
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 31.8 bits (73), Expect = 0.55
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 205 HLVGHSLGAHVCGIAGENIAHGKIGRITGLDPA 237
HLVGHS+G V A ++ +T + PA
Sbjct: 200 HLVGHSMGGAVALRLAAR-APQRVASLTLIAPA 231
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 30.4 bits (69), Expect = 0.86
Identities = 26/106 (24%), Positives = 34/106 (32%), Gaps = 22/106 (20%)
Query: 140 GSVEDMI-LMAYLELHDYNIICVDWS-NLASNRLYPLARWTIKYIGQHLADMLTTIERTT 197
G E L L YN++ VD+ + AS LAD ER
Sbjct: 10 GDPEAYAPLARALASRGYNVVAVDYPGHGASLGAPDAEAV--------LADAPLDPER-- 59
Query: 198 GYDWCMFHLVGHSLGAHV-CGIAGENIAHGKIGRITGLDPALPLFS 242
LVGHSLG V +A ++ L P +
Sbjct: 60 ------IVLVGHSLGGGVALLLAAR---DPRVKAAVVLAAGDPPDA 96
>gnl|CDD|173972 cd08207, RLP_NonPhot, Ribulose bisphosphate carboxylase like
proteins from nonphototrophic bacteria. Ribulose
bisphosphate carboxylase (Rubisco) plays an important
role in the Calvin reductive pentose phosphate pathway.
It catalyzes the primary CO2 fixation step. Rubisco is
activated by carbamylation of an active site lysine,
stabilized by a divalent cation, which then catalyzes
the proton abstraction from the substrate ribulose 1,5
bisphosphate (RuBP) and leads to the formation of two
molecules of 3-phosphoglycerate. Members of the Rubisco
family can be divided into 4 subgroups, Form I-IV, which
differ in their taxonomic distribution and subunit
composition. Form I-III have Rubisco activity, while
Form IV, also called Rubisco-like proteins (RLP), are
missing critical active site residues and therefore do
not catalyze CO2 fixation. They are believed to utilize
a related enzymatic mechanism, but have divergent
functions. The specific function of this subgroup is
unknown.
Length = 406
Score = 30.7 bits (70), Expect = 1.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 13 GGRLDPALPLFSSNITGRLDSTDATF-----VDIIHTCGG 47
GG D A+P+FSS G T+ VD+++ GG
Sbjct: 326 GGPDDAAMPVFSSGQWGG--QAPPTYRRLGSVDLLYLAGG 363
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 30.1 bits (69), Expect = 1.8
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 395 YVNSVLIK-EAKRIGYKMALLSNT 417
Y+NS+L K EA+R GY ALL +
Sbjct: 164 YLNSILAKTEARRNGYDEALLLDV 187
>gnl|CDD|235023 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 28.7 bits (65), Expect = 4.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 10/34 (29%)
Query: 159 ICVDWSNL--ASNRLYPLARWTIKYIGQHLADML 190
I +DWS++ +S+RL +YI +ADML
Sbjct: 54 IHIDWSSIGSSSSRL--------RYIASAMADML 79
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 28.8 bits (63), Expect = 5.0
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 151 LELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVGHS 210
Y +I D R + + + + D+ ++ LVGHS
Sbjct: 46 ALAARYRVIAPD------LRGHGRSDPAGYSLSAYADDLAALLDA---LGLEKVVLVGHS 96
Query: 211 LGAHV 215
+G V
Sbjct: 97 MGGAV 101
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 29.0 bits (66), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 211 LGAHVCGIAGENIAH 225
LGAH+ G E++ H
Sbjct: 403 LGAHIIGPDAEHLIH 417
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.458
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,445,587
Number of extensions: 2023919
Number of successful extensions: 1439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 18
Length of query: 417
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 318
Effective length of database: 6,546,556
Effective search space: 2081804808
Effective search space used: 2081804808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)