RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5002
(417 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 207 bits (528), Expect = 2e-64
Identities = 81/261 (31%), Positives = 115/261 (44%), Gaps = 34/261 (13%)
Query: 136 GHCKGSVEDMILMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIER 195
+ + ++ N ICVDW + Y A + + +G +A ++ +
Sbjct: 81 DKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT-EYTQASYNTRVVGAEIAFLVQVLST 139
Query: 196 TTGYDWCMFHLVGHSLGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNITG-RLDSTDA 254
GY HL+GHSLGAHV G AG + G +GRITGLDPA P F RLD +DA
Sbjct: 140 EMGYSPENVHLIGHSLGAHVVGEAGRRL-EGHVGRITGLDPAEPCFQGLPEEVRLDPSDA 198
Query: 255 TFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFIQPGCGWDIG------------- 295
FVD+IHT + G Q GH+DF+PNGG PGC +I
Sbjct: 199 MFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKE-MPGCQKNILSTIVDINGIWEGT 257
Query: 296 ----TCSHTRSYMFFTESIRTKIGFYARQCNSWSDYKKGHCKGSVEDM-ILMGEHVN--- 347
C+H RSY ++ SI GF C+S+ +++ C E+ MG + +
Sbjct: 258 QNFVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHYADQFE 317
Query: 348 ---TSARGKYYLMTASSKPYA 365
+ YL T S +
Sbjct: 318 GKTATVEQTVYLNTGDSGNFT 338
Score = 91.4 bits (226), Expect = 4e-21
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 17 DPALPLFSSNITG-RLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFIQ 69
DPA P F RLD +DA FVD+IHT + G Q GH+DF+PNGG
Sbjct: 178 DPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKE-M 236
Query: 70 PGCGWDIVHAYTTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHIYQTKIGFYARQCNS 129
PGC +I+ + +N C + S+ GF C+S
Sbjct: 237 PGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKY----YASSI---LNPDGFLGYPCSS 289
Query: 130 WSDYKKGHC 138
+ +++ C
Sbjct: 290 YEKFQQNDC 298
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 198 bits (503), Expect = 1e-60
Identities = 81/248 (32%), Positives = 112/248 (45%), Gaps = 35/248 (14%)
Query: 149 AYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHLVG 208
++ + N ICVDW + Y A ++ +G +A ML+ + Y L+G
Sbjct: 94 NMFKVEEVNCICVDWKKGSQT-SYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIG 152
Query: 209 HSLGAHVCGIAGENIAHGKIGRITGLDPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL 267
HSLGAHV G AG +GRITGLDP F RLD TDA FVD+IHT L
Sbjct: 153 HSLGAHVAGEAGSRT--PGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPL 210
Query: 268 ------GYYQPCGHVDFYPNGGTFIQPGCGWDIGT-----------------CSHTRSYM 304
G Q GH+DF+PNGG PGC + + C+H RSY
Sbjct: 211 IPFLGFGTSQQMGHLDFFPNGGEE-MPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYK 269
Query: 305 FFTESIRTKIGFYARQCNSWSDYKKGHC-KGSVEDMILMGEHVN------TSARGKYYLM 357
+++ESI GF + C S+ ++ C + MG + + + KY+L
Sbjct: 270 YYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAVKTSDETQKYFLN 329
Query: 358 TASSKPYA 365
T S +A
Sbjct: 330 TGDSSNFA 337
Score = 86.4 bits (213), Expect = 2e-19
Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 17 DPALPLFSSNIT-GRLDSTDATFVDIIHTCGGYL------GYYQPCGHVDFYPNGGTFIQ 69
DP F RLD TDA FVD+IHT L G Q GH+DF+PNGG
Sbjct: 177 DPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEE-M 235
Query: 70 PGCGWDIVHAYTTQQPGNKEAKNDGQCRTEEKIYLVLTGFVLSVHIYQTKIGFYARQCNS 129
PGC + + + ++ C + S+ GF + C S
Sbjct: 236 PGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKY----YSESI---LNPDGFASYPCAS 288
Query: 130 WSDYKKGHC 138
+ ++ C
Sbjct: 289 YRAFESNKC 297
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 33.2 bits (75), Expect = 0.048
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 147 LMAYLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTGYDWCMFHL 206
+ + L + + S L + + G+ L + I +G +L
Sbjct: 31 IPSALRRDGAQVYVTEVSQLDT----------SEVRGEQLLQQVEEIVALSGQP--KVNL 78
Query: 207 VGHSLGAHVC 216
+GHS G
Sbjct: 79 IGHSHGGPTI 88
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 29.9 bits (66), Expect = 0.48
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 140 GSVEDMILMA-YLELHDYNIICVDWSNLASNRLYPLARWTIKYIGQHLADMLTTIERTTG 198
++ +A YL + +++ D + + +T+ + T
Sbjct: 43 RRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTT---GKNSLCTVYHWLQT 99
Query: 199 YDWCMFHLVGHSLGAHVCGIAGENI 223
L+ SL A V ++
Sbjct: 100 KGTQNIGLIAASLSARVAYEVISDL 124
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 27.2 bits (60), Expect = 3.7
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 149 AYLELHDYNIICVDWSNLASNRLYPLARWTIK---YIGQHLADMLTTIERTTGYD 200
A + D II +D S+ R+ L R I + + I TGYD
Sbjct: 225 ATVVPIDSKIIPLDASHPHGERVRELLRTLIAHPGHESSQFHSIRDIITLYTGYD 279
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 406
Score = 27.0 bits (59), Expect = 4.7
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 29 GRLDSTDATFVDIIHTCGGYLGYYQPCGHVDFYPNGGTFIQPGCGW 74
D A + HT G G P ++ P Q G GW
Sbjct: 228 AMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGW 273
Score = 27.0 bits (59), Expect = 4.7
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 247 GRLDSTDATFVDIIHTCGGYLGYYQPCGHVDFYPNGGTFIQPGCGW 292
D A + HT G G P ++ P Q G GW
Sbjct: 228 AMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGW 273
>d1qoza_ c.69.1.30 (A:) Acetylxylan esterase {Trichoderma reesei
[TaxId: 51453]}
Length = 207
Score = 25.8 bits (56), Expect = 7.7
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 184 QHLADMLTTIERTTGYDWCMFHLVGHSLGAHVCGIAGENIAHGKIGRITGLDPALPLFSS 243
+ + + T LVG+S GA + A G P S
Sbjct: 70 AAINNFHNSCPDTQ------LVLVGYSQGAQIFDNALCGGGDPGEGITNTAVPLTAGAVS 123
Query: 244 NITG 247
+
Sbjct: 124 AVKA 127
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 26.0 bits (57), Expect = 9.2
Identities = 8/105 (7%), Positives = 27/105 (25%), Gaps = 14/105 (13%)
Query: 136 GHCKGSVEDMILMAYLELH--DYNIICVDWSNLASNRLYPL----ARWTIKYIGQHLADM 189
C + + +E +++ ++ + + + Q LA
Sbjct: 16 DSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKD 75
Query: 190 LTTIERTTGYDWCMFHLVGHSLGAHVCGIAGENIAHGKIGRITGL 234
+ ++ +G S G + + + +
Sbjct: 76 PKLQQG--------YNAMGFSQGGQFLRAVAQRCPSPPMVNLISV 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.458
Gapped
Lambda K H
0.267 0.0357 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,722,545
Number of extensions: 84180
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 15
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.6 bits)