BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5004
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9HPB8|RL6_HALSA 50S ribosomal protein L6P OS=Halobacterium salinarum (strain ATCC
           700922 / JCM 11081 / NRC-1) GN=rpl6p PE=1 SV=3
          Length = 178

 Score = 33.1 bits (74), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 17/112 (15%)

Query: 33  GTPFKWLWYPSISCPEEDDICVKIIERKGAEEIITRDCLSTVKAFRTDIPADRYEGCRAA 92
           G+  + LWYP +    EDD  V       A E+      STV  F + + A+ + G  + 
Sbjct: 28  GSVTRRLWYPDVDVSVEDDAVVV------ASEVDDAKTDSTVGTFESHV-ANMFHGV-SE 79

Query: 93  AKDPKLANYVNHSIPELDVQRPSELKTGYTEEIITRDCLSTVKAFRTDIPAD 144
             + KL  + +H   ++DV+          EE++ ++ L    A RT I  D
Sbjct: 80  GWEYKLEVHYSHFPMQVDVE---------GEEVVIQNFLGEKAARRTQIRGD 122


>sp|P11657|PAC_STRMG Major cell-surface adhesin PAc OS=Streptococcus mutans GN=pac PE=1
           SV=1
          Length = 1565

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)

Query: 42  PSISCPEEDDICVKIIERKGAEEIITRDCLSTVKAFRTDIPADRYEGCRAAAKDPKLA-- 99
           P+ + PE      K  E + ++  + R  + T++  +TD+          AAKD K A  
Sbjct: 59  PATNLPEAQGSASK--EAEQSQTKLERQMVHTIEVPKTDLDQ--------AAKDAKSAGV 108

Query: 100 NYVNHS--------IPELDVQRPSELKTGYTEEIITRDCLSTVKAFRTDIPADRYEGCRA 151
           N V  +         PE  VQ+ +E+K  YT++    D   T   +++D+ A   E  + 
Sbjct: 109 NVVQDADVNKGTVKTPEEAVQKETEIKEDYTKQ--AEDIKKTTDQYKSDVAAHEAEVAKI 166

Query: 152 AAKD 155
            AK+
Sbjct: 167 KAKN 170


>sp|Q8F8T8|NUSB_LEPIN N utilization substance protein B homolog OS=Leptospira
          interrogans serogroup Icterohaemorrhagiae serovar Lai
          (strain 56601) GN=nusB PE=3 SV=1
          Length = 138

 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 17 CSALLCYQCVSTQPGCGTPFKWLWYPSISCPEEDDICVKIIER--KGAEEIIT 67
           + +  YQ   TQP      K+ WY   + PEE D  V I+    K  E+I T
Sbjct: 10 IAVMALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDT 62


>sp|Q72V97|NUSB_LEPIC N utilization substance protein B homolog OS=Leptospira
          interrogans serogroup Icterohaemorrhagiae serovar
          copenhageni (strain Fiocruz L1-130) GN=nusB PE=3 SV=2
          Length = 138

 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 17 CSALLCYQCVSTQPGCGTPFKWLWYPSISCPEEDDICVKIIER--KGAEEIIT 67
           + +  YQ   TQP      K+ WY   + PEE D  V I+    K  E+I T
Sbjct: 10 IAVMALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDT 62


>sp|Q54UW4|Y0777_DICDI Bromodomain-containing protein DDB_G0280777 OS=Dictyostelium
           discoideum GN=DDB_G0280777 PE=4 SV=1
          Length = 1823

 Score = 32.0 bits (71), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 29/122 (23%)

Query: 66  ITRDCLSTVKAFRTDIPADRYEGCRAAAKDP----------KLANYVNHSIPELDVQRPS 115
           + R  L+ VK     +PA ++ G ++ A++           +L +Y +HS P L   RPS
Sbjct: 285 VFRSLLTDVK-----VPAKKFNGLKSEAQEEMYDQLDTVLNQLKDYSDHSFPFLTKVRPS 339

Query: 116 ELKTGYTEEIITR--DCLSTVKAFRTDIPADRYE----------GCRAAAKDPKLANYVN 163
           E    Y  EII +  D     K  +      ++E           CR    DP    YV 
Sbjct: 340 EAPNYY--EIIKKPMDLSLMTKKLKKLEYQSKFEFQLDLNLIFTNCRIYNTDPSGKVYVE 397

Query: 164 HS 165
           H+
Sbjct: 398 HA 399


>sp|Q9K6K2|RBSR_BACHD Ribose operon repressor OS=Bacillus halodurans (strain ATCC BAA-125
           / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rbsR PE=3
           SV=1
          Length = 331

 Score = 30.8 bits (68), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 98  LANYVNHSIPELDVQRPSELKTGYTEEIITRDC--LSTVKAFRTDIPA-DRYEGCRAAAK 154
           L  YVN +IP +  Q  +  +   TE ++ + C  ++ ++  +   PA DRYEG +   +
Sbjct: 141 LDRYVNENIPLVASQNKAGARLA-TEHLLEQGCQFIAHIRGPKGVTPAEDRYEGFKEVVE 199

Query: 155 DPKLANYV 162
           + ++AN V
Sbjct: 200 EQEVANIV 207


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,972,985
Number of Sequences: 539616
Number of extensions: 2539210
Number of successful extensions: 5081
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5077
Number of HSP's gapped (non-prelim): 14
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)