RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5004
         (173 letters)



>gnl|CDD|225461 COG2909, MalT, ATP-dependent transcriptional regulator
           [Transcription].
          Length = 894

 Score = 31.6 bits (72), Expect = 0.21
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 76  AFRTDIPADRYEGCRAAAK------DPKLANYVNHSIPELDVQRPSELKTGYTEEIITRD 129
             + ++ A   E  RAAA+       P  A  ++H++   D +  ++L      ++    
Sbjct: 337 RLQRELAARLKELHRAAAEWFAEHGLPSEA--IDHALAAGDPEMAADLLEQLEWQLFNGS 394

Query: 130 CLSTVKAFRTDIPADRYEGCRAAAKDPKL------ANYVNHSIPE 168
            LS + A+   +PA+        A  P+L           H + E
Sbjct: 395 ELSLLLAWLKALPAE------LLASTPRLVLLQAWLLASQHRLAE 433


>gnl|CDD|193557 cd05682, M20_dipept_like_5, Uncharacterized M20 Dipeptidases.
           Peptidase M20 family, unknown dipeptidase-like subfamily
           3 (inferred by homology to be dipeptidases). M20
           dipeptidases include a large variety of bacterial
           enzymes including cytosolic nonspecific dipeptidase
           (CNDP), Xaa-methyl-His dipeptidase (anserinase),and
           canosinase. These dipeptidases have been shown to act on
           a wide range of dipeptides, but not larger peptides. For
           example, anserinase mainly catalyzes the hydrolysis of
           N-alpha-acetylhistidine while carnosinase degrades
           beta-alanyl-L-histidine.
          Length = 451

 Score = 29.2 bits (66), Expect = 1.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 74  VKAFRTDIPADRYEGCRAAAK 94
                 +IPA RYE  + AA+
Sbjct: 240 PDELHCEIPAHRYEQAKKAAE 260



 Score = 29.2 bits (66), Expect = 1.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 134 VKAFRTDIPADRYEGCRAAAK 154
                 +IPA RYE  + AA+
Sbjct: 240 PDELHCEIPAHRYEQAKKAAE 260


>gnl|CDD|130598 TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase.  Glucan
          1,4-alpha-glucosidase catalyzes the hydrolysis of
          terminal 1,4-linked alpha-D-glucose residues from
          non-reducing ends of polysaccharides, releasing a
          beta-D-glucose monomer. Some forms of this enzyme can
          hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic
          bonds in polysaccharides as well [Energy metabolism,
          Biosynthesis and degradation of polysaccharides].
          Length = 648

 Score = 26.7 bits (59), Expect = 7.0
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 40 WYPSISCPEEDDICVKIIERKGAEEIITRDCLSTVKAFRTDIPA 83
          +YP I   +  ++   + + K      T+D  S V+ F     A
Sbjct: 16 YYPRIDTADIKELKFAVTDGKSFVSDETKDTTSKVEKFTDKALA 59


>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated.
          Length = 482

 Score = 26.8 bits (60), Expect = 7.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 53  CVKIIERKGAEEII 66
           C+K+I R G+E+II
Sbjct: 142 CLKLISRPGSEKII 155


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0813    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,644,971
Number of extensions: 764783
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)