BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5005
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDE 77
K+ VV++ E LG S + SDKTGTLTQN M L + DT ++
Sbjct: 364 KNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTED 415
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFT 85
K+ +VRS E LG S + SDKTGTLT N M K+ + D + L
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI---------IDRIDGDLCLL 379
Query: 86 YENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSL 121
E S T + P + V+ ++K RS G V L
Sbjct: 380 NE-FSVTGSTYAPEGE-VLKNDKPVRSGQYDGLVEL 413
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL 65
K+ +VRS E LG S + SDKTGTLT N M K+ +
Sbjct: 330 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL 65
K+ +VRS E LG S + SDKTGTLT N M K+ +
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSM 58
K+ +V++ E LG S + SDKTGTLTQN M
Sbjct: 329 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 361
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDT 74
K+ +V++ E LG S + SDKTGTLTQN M + + DT
Sbjct: 359 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADT 407
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL 65
K+ +VRS E LG S + S KTGTLT N M K+ +
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSM 58
K+ +V++ E LG S + S KTGTLTQN M
Sbjct: 323 KNCLVKNLEAVETLGSTSTICSXKTGTLTQNRM 355
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSM 58
K +V+ + E L + L SDKTGTLT+N +
Sbjct: 356 KKAIVQKLSAIESLAGVEILCSDKTGTLTKNKL 388
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 29 VVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
+ + T EE+ + L SDKTGTLT N + K
Sbjct: 310 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDK 343
>pdb|3H1T|A Chain A, The Fragment Structure Of A Putative Hsdr Subunit Of A
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 590
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 24 DMKDTVVRSTTIPEELGRISYLLSDKTGTLTQN 56
+ K V R T + E+ G++ + + D TG+ TQN
Sbjct: 532 EFKQIVGRGTRLREDYGKLWFNIIDYTGSATQN 564
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLT 54
K +++++ + E++ I ++ DKTGTLT
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|3SJO|A Chain A, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|B Chain B, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|C Chain C, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|D Chain D, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|E Chain E, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|F Chain F, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|G Chain G, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|H Chain H, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
Length = 190
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 73 DTFDEVRDLLKFTYENMSATADS----NTPH 99
DT ++ RD+ KF EN+S +D+ NT H
Sbjct: 79 DTNEKFRDITKFIPENISTASDATLVINTEH 109
>pdb|3SJK|A Chain A, Crystal Structure Of The C147a Mutant 3c From Enterovirus
71
Length = 190
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 73 DTFDEVRDLLKFTYENMSATADS----NTPH 99
DT ++ RD+ KF EN+S +D+ NT H
Sbjct: 79 DTNEKFRDITKFIPENISTASDATLVINTEH 109
>pdb|3R0F|A Chain A, Human Enterovirus 71 3c Protease Mutant H133g In Complex
With Rupintrivir
pdb|3R0F|B Chain B, Human Enterovirus 71 3c Protease Mutant H133g In Complex
With Rupintrivir
Length = 187
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 73 DTFDEVRDLLKFTYENMSATADS----NTPH 99
DT ++ RD+ KF EN+S +D+ NT H
Sbjct: 82 DTNEKFRDITKFIPENISTASDATLVINTEH 112
>pdb|3OSY|A Chain A, Human Enterovirus 71 3c Protease
pdb|3OSY|B Chain B, Human Enterovirus 71 3c Protease
pdb|3OSY|C Chain C, Human Enterovirus 71 3c Protease
pdb|3OSY|D Chain D, Human Enterovirus 71 3c Protease
pdb|3OSY|E Chain E, Human Enterovirus 71 3c Protease
Length = 204
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 73 DTFDEVRDLLKFTYENMSATADS----NTPH 99
DT ++ RD+ KF EN+S +D+ NT H
Sbjct: 99 DTNEKFRDITKFIPENISTASDATLVINTEH 129
>pdb|3QZR|A Chain A, Human Enterovirus 71 3c Protease Mutant E71a In Complex
With Rupintrivir
pdb|3QZR|B Chain B, Human Enterovirus 71 3c Protease Mutant E71a In Complex
With Rupintrivir
Length = 187
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 73 DTFDEVRDLLKFTYENMSATADS----NTPH 99
DT ++ RD+ KF EN+S +D+ NT H
Sbjct: 82 DTNEKFRDITKFIPENISTASDATLVINTEH 112
>pdb|3QZQ|A Chain A, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|B Chain B, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|C Chain C, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|D Chain D, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
Length = 187
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 73 DTFDEVRDLLKFTYENMSATADS----NTPH 99
DT ++ RD+ KF EN+S +D+ NT H
Sbjct: 82 DTNEKFRDITKFIPENISTASDATLVINTEH 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,740,860
Number of Sequences: 62578
Number of extensions: 132598
Number of successful extensions: 278
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 24
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)