Query psy5005
Match_columns 125
No_of_seqs 138 out of 1181
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 23:24:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0210|consensus 99.8 8.6E-21 1.9E-25 166.4 7.2 108 2-118 367-474 (1051)
2 PLN03190 aminophospholipid tra 99.6 2E-16 4.2E-21 146.3 6.9 70 2-71 407-482 (1178)
3 TIGR01652 ATPase-Plipid phosph 99.6 1.4E-15 3.1E-20 139.1 6.6 70 2-71 313-388 (1057)
4 COG0474 MgtA Cation transport 99.5 1.8E-14 4E-19 130.5 4.6 62 2-67 312-373 (917)
5 KOG0202|consensus 99.4 1.4E-13 3.1E-18 122.9 4.6 62 3-68 297-358 (972)
6 KOG0206|consensus 99.4 9.3E-14 2E-18 127.8 3.3 72 2-73 341-418 (1151)
7 TIGR01523 ATPase-IID_K-Na pota 99.4 2.2E-13 4.8E-18 125.1 5.4 60 3-66 324-383 (1053)
8 TIGR01511 ATPase-IB1_Cu copper 99.4 5E-13 1.1E-17 115.5 6.4 82 4-90 243-324 (562)
9 TIGR01647 ATPase-IIIA_H plasma 99.4 6.8E-13 1.5E-17 118.2 6.0 61 3-67 251-311 (755)
10 TIGR01525 ATPase-IB_hvy heavy 99.4 1.3E-12 2.7E-17 112.6 6.9 82 4-89 212-294 (556)
11 KOG0204|consensus 99.4 8.3E-13 1.8E-17 118.3 5.5 65 3-71 400-464 (1034)
12 TIGR01116 ATPase-IIA1_Ca sarco 99.4 7.5E-13 1.6E-17 120.0 5.4 61 3-67 254-314 (917)
13 TIGR01517 ATPase-IIB_Ca plasma 99.3 1.2E-12 2.7E-17 118.8 5.9 61 4-68 342-402 (941)
14 TIGR01106 ATPase-IIC_X-K sodiu 99.3 1.2E-12 2.7E-17 119.5 5.7 62 3-68 309-370 (997)
15 COG2217 ZntA Cation transport 99.3 2.2E-12 4.7E-17 114.7 6.3 75 9-89 376-450 (713)
16 TIGR01494 ATPase_P-type ATPase 99.3 1.5E-12 3.4E-17 110.3 5.1 61 3-67 195-255 (499)
17 TIGR01512 ATPase-IB2_Cd heavy 99.3 5.5E-12 1.2E-16 108.4 6.4 75 4-89 212-286 (536)
18 PRK10671 copA copper exporting 99.3 5.8E-12 1.3E-16 113.0 5.9 81 4-89 483-563 (834)
19 PRK11033 zntA zinc/cadmium/mer 99.3 7.6E-12 1.6E-16 111.4 6.3 70 15-89 413-482 (741)
20 TIGR01524 ATPase-IIIB_Mg magne 99.3 4.1E-12 8.8E-17 114.8 4.4 57 4-64 302-358 (867)
21 PRK01122 potassium-transportin 99.2 1.2E-11 2.6E-16 109.5 6.5 74 11-89 271-344 (679)
22 TIGR01522 ATPase-IIA2_Ca golgi 99.2 5.6E-12 1.2E-16 113.9 4.3 60 4-67 290-349 (884)
23 TIGR01497 kdpB K+-transporting 99.2 1.6E-11 3.5E-16 108.7 6.7 72 13-89 274-345 (675)
24 PRK15122 magnesium-transportin 99.2 8.7E-12 1.9E-16 113.1 4.6 58 4-65 335-392 (903)
25 PRK10517 magnesium-transportin 99.2 1.2E-11 2.6E-16 112.2 4.6 57 4-64 337-393 (902)
26 TIGR01657 P-ATPase-V P-type AT 99.2 2.4E-11 5.1E-16 111.7 4.8 61 3-67 413-473 (1054)
27 PRK14010 potassium-transportin 99.1 5.9E-11 1.3E-15 105.1 6.1 53 8-64 268-320 (673)
28 KOG0203|consensus 99.0 3.4E-10 7.4E-15 101.7 4.2 64 3-70 331-394 (1019)
29 KOG0207|consensus 98.9 1.8E-09 3.8E-14 97.6 5.2 63 27-89 567-629 (951)
30 KOG0205|consensus 98.8 3.2E-09 6.9E-14 93.9 2.1 78 8-89 297-389 (942)
31 PF00702 Hydrolase: haloacid d 98.1 1.9E-06 4.1E-11 63.6 2.0 41 42-89 1-41 (215)
32 KOG0208|consensus 97.8 4.6E-05 1E-09 70.2 6.7 87 4-94 434-521 (1140)
33 KOG0209|consensus 97.2 0.00049 1.1E-08 63.0 4.5 39 27-65 464-502 (1160)
34 COG2216 KdpB High-affinity K+ 94.9 0.049 1.1E-06 48.2 5.1 39 27-65 284-322 (681)
35 PF12710 HAD: haloacid dehalog 59.1 5.3 0.00012 28.6 1.2 13 45-57 1-13 (192)
36 COG1778 Low specificity phosph 31.6 35 0.00077 25.9 1.9 27 36-62 2-28 (170)
37 TIGR00156 conserved hypothetic 29.3 26 0.00056 25.3 0.8 24 31-54 62-85 (126)
38 TIGR02726 phenyl_P_delta pheny 29.0 41 0.00088 25.0 1.9 26 37-62 2-27 (169)
39 PRK10053 hypothetical protein; 29.0 26 0.00057 25.4 0.8 24 31-54 66-89 (130)
40 PF04076 BOF: Bacterial OB fol 27.8 24 0.00051 24.5 0.4 25 30-54 38-62 (103)
41 PF10555 MraY_sig1: Phospho-N- 26.9 43 0.00094 15.0 1.0 12 49-60 1-12 (13)
No 1
>KOG0210|consensus
Probab=99.83 E-value=8.6e-21 Score=166.42 Aligned_cols=108 Identities=50% Similarity=0.763 Sum_probs=99.3
Q ss_pred ceeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHH
Q psy5005 2 DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDL 81 (125)
Q Consensus 2 ~SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~ 81 (125)
|||+|+++++|.+++|.|..|.+++|+++|..+++|+||+++|+++|||||||||+|.+++++++..+|..+.++++.++
T Consensus 367 ISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTLTqNEM~~KKiHLGTv~~s~e~~~eV~~~ 446 (1051)
T KOG0210|consen 367 ISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTLTQNEMEFKKIHLGTVAYSAETMDEVSQH 446 (1051)
T ss_pred eEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCccccchheeeeeeeeeeeccHhHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHccCCCCCCCCCCCCCcccccCceeecccCCcce
Q psy5005 82 LKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGT 118 (125)
Q Consensus 82 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (125)
+++.++.+ .++++ -...++||++++||+
T Consensus 447 i~s~~~~~--------~~~~~-~~~~~~k~~~s~rv~ 474 (1051)
T KOG0210|consen 447 IQSLYTPG--------RNKGK-GALSRVKKDMSARVR 474 (1051)
T ss_pred HHHhhCCC--------ccccc-ccchhhcCcccHHHH
Confidence 99988763 12333 457889999999985
No 2
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.65 E-value=2e-16 Score=146.29 Aligned_cols=70 Identities=36% Similarity=0.519 Sum_probs=65.1
Q ss_pred ceeEehHHHHHHHHHhHhhcCCCCc------ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCC
Q psy5005 2 DGLRVNLDMGKAFYSWSMQRDPDMK------DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG 71 (125)
Q Consensus 2 ~SL~V~l~l~~a~~s~~m~~d~~~~------g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~ 71 (125)
+||+|+++++|.+++++|.+|.+|+ ++.+|+++++|+||+|+|||+|||||||+|+|.|++|.+++..|+
T Consensus 407 ISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~ 482 (1178)
T PLN03190 407 ISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYS 482 (1178)
T ss_pred eeeeeeHHHHHHHHHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcc
Confidence 6999999999999999999999884 367999999999999999999999999999999999999887765
No 3
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.59 E-value=1.4e-15 Score=139.05 Aligned_cols=70 Identities=43% Similarity=0.663 Sum_probs=64.5
Q ss_pred ceeEehHHHHHHHHHhHhhcCCCCc------ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCC
Q psy5005 2 DGLRVNLDMGKAFYSWSMQRDPDMK------DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG 71 (125)
Q Consensus 2 ~SL~V~l~l~~a~~s~~m~~d~~~~------g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~ 71 (125)
+||+|++++++++++++|.+|..|. ++++|+++++|+||++++||+|||||||+|+|.+++|++++..|.
T Consensus 313 isL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~ 388 (1057)
T TIGR01652 313 ISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYG 388 (1057)
T ss_pred eeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEec
Confidence 5899999999999999999888773 499999999999999999999999999999999999998876664
No 4
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.8e-14 Score=130.54 Aligned_cols=62 Identities=37% Similarity=0.542 Sum_probs=59.0
Q ss_pred ceeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005 2 DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67 (125)
Q Consensus 2 ~SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~ 67 (125)
.+|++.+++.+++++.+|+++ ++++|+++++|+||++++||+|||||||||+|.|++++..+
T Consensus 312 egLp~~vti~la~g~~~mak~----~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~ 373 (917)
T COG0474 312 EGLPAVVTIALALGAQRMAKD----NAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYING 373 (917)
T ss_pred cchHHHHHHHHHHHHHHHHhc----cchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCC
Confidence 378999999999999999999 78999999999999999999999999999999999999984
No 5
>KOG0202|consensus
Probab=99.41 E-value=1.4e-13 Score=122.91 Aligned_cols=62 Identities=32% Similarity=0.424 Sum_probs=58.0
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV 68 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~ 68 (125)
+|++.|+++++++.++|+++ +++||.++.+|+||++++||+|||||||+|+|.+.++|+.+.
T Consensus 297 GLPaVvT~tLALG~~rMakk----naIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~ 358 (972)
T KOG0202|consen 297 GLPAVVTTTLALGTRRMAKK----NAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDG 358 (972)
T ss_pred CCcchhhhhHHHhHHHHHhh----hhhhhcccchhhccceeEEecCCCCcccccceEEEEEEeccc
Confidence 57888999999999999999 688999999999999999999999999999999999988653
No 6
>KOG0206|consensus
Probab=99.41 E-value=9.3e-14 Score=127.80 Aligned_cols=72 Identities=42% Similarity=0.641 Sum_probs=67.6
Q ss_pred ceeEehHHHHHHHHHhHhhcCCCC------cceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcC
Q psy5005 2 DGLRVNLDMGKAFYSWSMQRDPDM------KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPD 73 (125)
Q Consensus 2 ~SL~V~l~l~~a~~s~~m~~d~~~------~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~ 73 (125)
|||||++++.+.+++++|.+|.+| ..+.+|+.++.|+||+|++|++|||||||+|.|.|.+|.+.+..|...
T Consensus 341 ISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~ 418 (1151)
T KOG0206|consen 341 ISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRN 418 (1151)
T ss_pred EEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccC
Confidence 799999999999999999999888 367899999999999999999999999999999999999999888653
No 7
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.40 E-value=2.2e-13 Score=125.07 Aligned_cols=60 Identities=32% Similarity=0.443 Sum_probs=56.8
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEec
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLG 66 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~ 66 (125)
+|++.+++++++++++|+++ +++||+++++|+||++++||+|||||||+|+|.+++++..
T Consensus 324 gLp~~vti~La~g~~rMak~----~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~~ 383 (1053)
T TIGR01523 324 SLIAVLSITMAMGAANMSKR----NVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIP 383 (1053)
T ss_pred chHHHHHHHHHHHHHHHHhc----CCEeccchhhhhccCccEEEecCcCccccceEEEEEEEEc
Confidence 57888999999999999999 8999999999999999999999999999999999999864
No 8
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.39 E-value=5e-13 Score=115.50 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=68.6
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK 83 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~ 83 (125)
|.+.+.++...+...+.++ |+++|+..++|.|++++++|+|||||||+|+|.+.+++..+. +..+++..+.+++|
T Consensus 243 L~la~p~a~~~~~~~aa~~----gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~-~~~~~~l~~aa~~e 317 (562)
T TIGR01511 243 LGLATPTVIAVATGLAAKN----GVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVHVFGD-RDRTELLALAAALE 317 (562)
T ss_pred hhhHHHHHHHHHHHHHHHC----CeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEEecCCC-CCHHHHHHHHHHHh
Confidence 3445566667777888887 999999999999999999999999999999999999875442 34556788888999
Q ss_pred hHccCCC
Q psy5005 84 FTYENMS 90 (125)
Q Consensus 84 ~~~~~p~ 90 (125)
+.++||-
T Consensus 318 ~~s~HPi 324 (562)
T TIGR01511 318 AGSEHPL 324 (562)
T ss_pred ccCCChH
Confidence 9999993
No 9
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.37 E-value=6.8e-13 Score=118.19 Aligned_cols=61 Identities=28% Similarity=0.285 Sum_probs=55.5
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~ 67 (125)
.|++.+.++.+++.++|+++ |+++|+++++|.||.++++|+|||||||+|+|.+.+++..+
T Consensus 251 ~Lp~~~~~~la~g~~r~ak~----gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~ 311 (755)
T TIGR01647 251 AMPAVLSVTMAVGAAELAKK----KAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFF 311 (755)
T ss_pred chHHHHHHHHHHHHHHHHhC----CeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEEecC
Confidence 35667788889999999998 89999999999999999999999999999999999988654
No 10
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.36 E-value=1.3e-12 Score=112.59 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=69.0
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccC-CcCcHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSY-GPDTFDEVRDLL 82 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~-~~~~~~~i~~~l 82 (125)
|++.+.++.+.+...+.++ |+++|+.+.+|.+|+++++|+|||||||+|+|.+.+++..+... ..+....+.+.+
T Consensus 212 l~l~~~~~~~~~~~~~~~~----gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~~a~~~ 287 (556)
T TIGR01525 212 LGLATPVAILVAIGVAARR----GILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLALAAAL 287 (556)
T ss_pred hhehhHHHHHHHHHHHHHC----CceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHHHHHHH
Confidence 5677788888899999998 89999999999999999999999999999999999987654311 134566677788
Q ss_pred HhHccCC
Q psy5005 83 KFTYENM 89 (125)
Q Consensus 83 ~~~~~~p 89 (125)
++.++||
T Consensus 288 e~~~~hp 294 (556)
T TIGR01525 288 EQSSSHP 294 (556)
T ss_pred hccCCCh
Confidence 8999998
No 11
>KOG0204|consensus
Probab=99.35 E-value=8.3e-13 Score=118.30 Aligned_cols=65 Identities=32% Similarity=0.474 Sum_probs=59.3
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG 71 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~ 71 (125)
.|++.|++.++|..++|.+| +.+||++++||++|+.+.||+|||||||.|+|.+.+.++++..+.
T Consensus 400 GLPLAVTLsLAys~kkMmkD----~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~~~~k 464 (1034)
T KOG0204|consen 400 GLPLAVTLSLAYSMKKMMKD----NNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGSEHYK 464 (1034)
T ss_pred CccHHHHHHHHHHHHHHhcc----hhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeecccccc
Confidence 35666777789999999999 678999999999999999999999999999999999999888776
No 12
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.35 E-value=7.5e-13 Score=119.97 Aligned_cols=61 Identities=33% Similarity=0.365 Sum_probs=57.3
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~ 67 (125)
+|++.+++++++++++|.++ ++++|+++++|+||+++++|+|||||||+|+|.+.+++..+
T Consensus 254 ~Lp~~vti~l~~~~~~m~~~----~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~ 314 (917)
T TIGR01116 254 GLPAVITTCLALGTRKMAKK----NAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALD 314 (917)
T ss_pred ccHHHHHHHHHHHHHHHHHC----CcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecC
Confidence 57889999999999999998 89999999999999999999999999999999999998654
No 13
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.34 E-value=1.2e-12 Score=118.75 Aligned_cols=61 Identities=33% Similarity=0.421 Sum_probs=54.9
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV 68 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~ 68 (125)
|++.++++.+++.++|.++ |+++|+++++|+||+++++|+|||||||+|+|.+++++..+.
T Consensus 342 Lp~~vti~l~~~~~~mak~----~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~ 402 (941)
T TIGR01517 342 LPLAVTIALAYSMKKMMKD----NNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQ 402 (941)
T ss_pred hHHHHHHHHHHHHHHHHhC----CCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecc
Confidence 5566777778899999998 899999999999999999999999999999999999987653
No 14
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.33 E-value=1.2e-12 Score=119.48 Aligned_cols=62 Identities=32% Similarity=0.426 Sum_probs=58.0
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV 68 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~ 68 (125)
+|++.+++++++++++|.++ ++++|++.++|+||+++++|+|||||||+|+|.+.+++.++.
T Consensus 309 ~L~~~v~i~l~~~~~~m~~~----~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~ 370 (997)
T TIGR01106 309 GLLATVTVCLTLTAKRMARK----NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQ 370 (997)
T ss_pred cchHHHHHHHHHHHHHHHHC----CcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCe
Confidence 57889999999999999998 899999999999999999999999999999999999987654
No 15
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.2e-12 Score=114.72 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=64.2
Q ss_pred HHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccC
Q psy5005 9 DMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYEN 88 (125)
Q Consensus 9 ~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 88 (125)
.++...+.....+. |+++|+..++|.+++++++.||||||||+|++.+.++...+. +++++..+++++|++++|
T Consensus 376 P~ai~~g~g~aA~~----GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~--~e~~~L~laAalE~~S~H 449 (713)
T COG2217 376 PTAILVGIGRAARR----GILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG--DEDELLALAAALEQHSEH 449 (713)
T ss_pred HHHHHHHHHHHHhC----ceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC--CHHHHHHHHHHHHhcCCC
Confidence 33344455555565 999999999999999999999999999999999999887654 567899999999999999
Q ss_pred C
Q psy5005 89 M 89 (125)
Q Consensus 89 p 89 (125)
|
T Consensus 450 P 450 (713)
T COG2217 450 P 450 (713)
T ss_pred h
Confidence 9
No 16
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.32 E-value=1.5e-12 Score=110.32 Aligned_cols=61 Identities=38% Similarity=0.542 Sum_probs=56.1
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~ 67 (125)
+|++.+++++..+...+.+. |+++|+.+++|+||+++++|+|||||||+|+|.+.+++..+
T Consensus 195 aL~~~~~~~~~~~~~~~~~~----gilvk~~~~lE~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 255 (499)
T TIGR01494 195 ALPLAVTIALAVGDARLAKK----GIVVRSLNALEELGKVDYICSDKTGTLTKNEMSFKKVSVLG 255 (499)
T ss_pred cHHHHHHHHHHHHHHHHHHC----CcEEechhhhhhccCCcEEEeeCCCccccCceEEEEEEecC
Confidence 56788888999999899887 89999999999999999999999999999999999998754
No 17
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.28 E-value=5.5e-12 Score=108.37 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=65.1
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK 83 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~ 83 (125)
|++.+.++...+...+.++ |+++|+.+.+|.+|+++++|+|||||||+|+|.+.+++.. +...+..+++
T Consensus 212 L~la~~~~~~~~~~~~~k~----gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~-------~~l~~a~~~e 280 (536)
T TIGR01512 212 LVISAPAAYLSAISAAARH----GILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVPA-------EVLRLAAAAE 280 (536)
T ss_pred cccchHHHHHHHHHHHHHC----CeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeHH-------HHHHHHHHHh
Confidence 5667777788888889888 8999999999999999999999999999999999987542 4666777888
Q ss_pred hHccCC
Q psy5005 84 FTYENM 89 (125)
Q Consensus 84 ~~~~~p 89 (125)
+.+.||
T Consensus 281 ~~~~hp 286 (536)
T TIGR01512 281 QASSHP 286 (536)
T ss_pred ccCCCc
Confidence 888888
No 18
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.26 E-value=5.8e-12 Score=113.00 Aligned_cols=81 Identities=16% Similarity=0.029 Sum_probs=67.4
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK 83 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~ 83 (125)
|.+.+.++...+...+.+. |+++|+.+++|.+|+++++|+|||||||+|+|.+.++...+. +..++...+..++|
T Consensus 483 L~la~p~a~~~~~~~~a~~----gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~l~~a~~~e 557 (834)
T PRK10671 483 LGLATPMSIISGVGRAAEF----GVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVKTFNG-VDEAQALRLAAALE 557 (834)
T ss_pred hhhhHHHHHHHHHHHHHHC----CeEEecHHHHHhhcCCCEEEEcCCCccccCceEEEEEEccCC-CCHHHHHHHHHHHh
Confidence 3445566667778888887 999999999999999999999999999999999998765432 34556778888999
Q ss_pred hHccCC
Q psy5005 84 FTYENM 89 (125)
Q Consensus 84 ~~~~~p 89 (125)
+.++||
T Consensus 558 ~~s~hp 563 (834)
T PRK10671 558 QGSSHP 563 (834)
T ss_pred CCCCCH
Confidence 999998
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.26 E-value=7.6e-12 Score=111.40 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=58.3
Q ss_pred HHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 15 YSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 15 ~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
+.....++ |+++|+..++|.|++++++|||||||||+|+|.+.+++..+. ++++.+..+.+++|+.++||
T Consensus 413 ~l~~aar~----gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~l~~aa~~e~~s~hP 482 (741)
T PRK11033 413 GLAAAARR----GALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATG-ISESELLALAAAVEQGSTHP 482 (741)
T ss_pred HHHHHHHC----CeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCC-CCHHHHHHHHHHHhcCCCCH
Confidence 33444555 899999999999999999999999999999999999875432 44556778888899999998
No 20
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.25 E-value=4.1e-12 Score=114.75 Aligned_cols=57 Identities=26% Similarity=0.357 Sum_probs=52.8
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEE
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLH 64 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~ 64 (125)
|++.+.++.+.++++|+++ |+++|++.++|+||+++++|+|||||||+|+|.+.+++
T Consensus 302 Lp~~vt~~la~g~~~mak~----~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~ 358 (867)
T TIGR01524 302 LPMIVSSNLAKGAINMSKK----KVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHI 358 (867)
T ss_pred HHHHHHHHHHHHHHHHHhC----CcEEccchhhhhccCccEEEecCCCccccCeEEEEEEe
Confidence 5667778889999999998 89999999999999999999999999999999999975
No 21
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.24 E-value=1.2e-11 Score=109.50 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=56.8
Q ss_pred HHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 11 GKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 11 ~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
....+..++.++ |+++|++.++|.+|.++++|+|||||||+|+|.+++++..+. +..+.+.......+..+.||
T Consensus 271 i~i~g~~r~ak~----gvLvk~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~-~~~~~ll~~a~~~s~~s~hP 344 (679)
T PRK01122 271 IGIAGMDRVLQA----NVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPG-VTEEELADAAQLSSLADETP 344 (679)
T ss_pred HHHHHHHHHhcC----CeeecCchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCC-CCHHHHHHHHHHhcCCCCCc
Confidence 335577888888 899999999999999999999999999999999999864321 23333444455555556666
No 22
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.24 E-value=5.6e-12 Score=113.92 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=54.6
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~ 67 (125)
|++.+.++.+++.++|.++ |+++|+++++|+||+++++|+|||||||+|+|.+.+++..+
T Consensus 290 Lp~~vt~~l~~~~~r~ak~----~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~ 349 (884)
T TIGR01522 290 LPIIVTVTLALGVLRMSKK----RAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSD 349 (884)
T ss_pred HHHHHHHHHHHHHHHHhhc----CCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecC
Confidence 5567777889999999998 89999999999999999999999999999999999987644
No 23
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.23 E-value=1.6e-11 Score=108.70 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 13 AFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 13 a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
..+..++.++ |+++|++.++|.+|.++++|+|||||||+|+|.+.+++..+. ...+.+.......+..++||
T Consensus 274 iag~~r~ar~----gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~-~~~~~ll~~aa~~~~~s~hP 345 (675)
T TIGR01497 274 IAGMDRVLGF----NVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQG-VDEKTLADAAQLASLADDTP 345 (675)
T ss_pred HHHHHHHHHC----CeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCC-CcHHHHHHHHHHhcCCCCCc
Confidence 3467788888 899999999999999999999999999999999999874321 23334455555566666776
No 24
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.22 E-value=8.7e-12 Score=113.11 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=53.2
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEe
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL 65 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~ 65 (125)
|++.+.++.+.+..+|+++ |+++|++.++|+||+++++|+|||||||+|+|.+.+++.
T Consensus 335 Lp~~vt~~La~g~~~mak~----~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~ 392 (903)
T PRK15122 335 LPMIVSSNLAKGAIAMARR----KVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLD 392 (903)
T ss_pred HHHHHHHHHHHHHHHHHHc----CCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEc
Confidence 5667778889999999998 899999999999999999999999999999999999764
No 25
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.20 E-value=1.2e-11 Score=112.25 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=52.3
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEE
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLH 64 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~ 64 (125)
|++.+.++.+.++.+|+++ |+++|+++++|+||.++++|+|||||||+|+|.+.++.
T Consensus 337 LP~~vt~~la~g~~~mak~----~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~ 393 (902)
T PRK10517 337 LPMIVTSTLARGAVKLSKQ----KVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHT 393 (902)
T ss_pred HHHHHHHHHHHHHHHHHhC----CcEEecchhhhhccCCCEEEecCCCccccceEEEEEEe
Confidence 5667777888999999999 89999999999999999999999999999999999864
No 26
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.17 E-value=2.4e-11 Score=111.67 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=56.4
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~ 67 (125)
.|++.++++.+++.++|.++ ++++|+...+|.+|+++++|+|||||||+|+|.+.+++..+
T Consensus 413 ~LP~~~ti~l~~~~~rL~k~----~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~ 473 (1054)
T TIGR01657 413 ALPAELSIGINNSLARLKKK----GIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLS 473 (1054)
T ss_pred hHHHHHHHHHHHHHHHHHHC----CEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEeccc
Confidence 46788889999999999998 89999999999999999999999999999999999987644
No 27
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.14 E-value=5.9e-11 Score=105.08 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEE
Q psy5005 8 LDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLH 64 (125)
Q Consensus 8 l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~ 64 (125)
+.+..+.+..+|.++ |+++|++.++|.+|.++++|+|||||||+|++.+.++.
T Consensus 268 ~~~~~~~g~~r~ak~----gvLvk~~~avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~ 320 (673)
T PRK14010 268 LSAIGIAGMDRVTQF----NILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFI 320 (673)
T ss_pred HHHHHHHHHHHHhhC----CEEEeCcHHHHHhhCCCEEEEeCCCcCCCCCeEEEEEE
Confidence 344456678888888 89999999999999999999999999999877666643
No 28
>KOG0203|consensus
Probab=98.99 E-value=3.4e-10 Score=101.69 Aligned_cols=64 Identities=33% Similarity=0.399 Sum_probs=59.4
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSY 70 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~ 70 (125)
.|.+++++++..-+++|.++ +|++|++++.|+||..+.||+|||||||+|+|.|.++|.++...
T Consensus 331 GL~~tvTv~LtltakrMa~K----nc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~ 394 (1019)
T KOG0203|consen 331 GLLATVTVCLTLTAKRMARK----NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIH 394 (1019)
T ss_pred CccceehhhHHHHHHHHhhc----eeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCcee
Confidence 46788899999999999999 79999999999999999999999999999999999999988643
No 29
>KOG0207|consensus
Probab=98.89 E-value=1.8e-09 Score=97.58 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=58.7
Q ss_pred ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
|+|+|..+++|.+.+++++.||||||||+|++.+.++..........++..+.+++|+.+.||
T Consensus 567 GvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHP 629 (951)
T KOG0207|consen 567 GVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHP 629 (951)
T ss_pred ceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCc
Confidence 899999999999999999999999999999999999887665556778999999999999999
No 30
>KOG0205|consensus
Probab=98.75 E-value=3.2e-09 Score=93.89 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=59.0
Q ss_pred HHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEE----EEecCccC-----------Cc
Q psy5005 8 LDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK----LHLGTVSY-----------GP 72 (125)
Q Consensus 8 l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~----~~~~~~~~-----------~~ 72 (125)
+++..+.++.+++++ |.++|.++++|+|+.++++|+|||||||.|++++.+ ++..+..- ..
T Consensus 297 lsvTMAiGs~rLaqq----gAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~ 372 (942)
T KOG0205|consen 297 LSVTMAIGSHRLSQQ----GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRK 372 (942)
T ss_pred eeehhhHHHHHHHhc----ccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhh
Confidence 333448899999998 889999999999999999999999999999999988 34433211 12
Q ss_pred CcHHHHHHHHHhHccCC
Q psy5005 73 DTFDEVRDLLKFTYENM 89 (125)
Q Consensus 73 ~~~~~i~~~l~~~~~~p 89 (125)
+..|+|.+++-.....|
T Consensus 373 en~DAID~A~v~~L~dP 389 (942)
T KOG0205|consen 373 ENQDAIDAAIVGMLADP 389 (942)
T ss_pred cChhhHHHHHHHhhcCH
Confidence 34566666666655555
No 31
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.06 E-value=1.9e-06 Score=63.60 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=32.6
Q ss_pred ceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 42 ISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 42 v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
|+++|||||||||++++.+ ..+....+..+...++..+.||
T Consensus 1 i~~i~fDktGTLt~~~~~v-------~~~~~~~~~~~~~~~~~~s~~p 41 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV-------APPSNEAALAIAAALEQGSEHP 41 (215)
T ss_dssp ESEEEEECCTTTBESHHEE-------ESCSHHHHHHHHHHHHCTSTSH
T ss_pred CeEEEEecCCCcccCeEEE-------EeccHHHHHHHHHHhhhcCCCc
Confidence 5789999999999999998 1144556777777777778887
No 32
>KOG0208|consensus
Probab=97.82 E-value=4.6e-05 Score=70.16 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=58.6
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCcc-CCcCcHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVS-YGPDTFDEVRDLL 82 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~-~~~~~~~~i~~~l 82 (125)
|+-.+.++-.+...++.++ |+.+=+..-+-.-|+++.+|||||||||+..+-+-.+...+.. .+.+.+....+..
T Consensus 434 LPAaltvG~~~a~~RLkkk----~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~ 509 (1140)
T KOG0208|consen 434 LPAALTVGIIYAQSRLKKK----GIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDS 509 (1140)
T ss_pred chhhhhHHHHHHHHHHHhc----CeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhh
Confidence 3445666667777788887 7888888888888999999999999999999988776553322 2333344444433
Q ss_pred HhHccCCCCCCC
Q psy5005 83 KFTYENMSATAD 94 (125)
Q Consensus 83 ~~~~~~p~~~~~ 94 (125)
.+...|-+..++
T Consensus 510 ~~~~~~l~~~~~ 521 (1140)
T KOG0208|consen 510 LQLFYKLSLRSS 521 (1140)
T ss_pred ccceeecccccc
Confidence 344444433333
No 33
>KOG0209|consensus
Probab=97.17 E-value=0.00049 Score=63.00 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=31.2
Q ss_pred ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEe
Q psy5005 27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL 65 (125)
Q Consensus 27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~ 65 (125)
++.+-..==+--.|++++.|||||||||+..|.|..+.-
T Consensus 464 ~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag 502 (1160)
T KOG0209|consen 464 GVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAG 502 (1160)
T ss_pred ceeecCccccccCCceeEEEecCCCccccccEEEEeccc
Confidence 566654444456799999999999999999999988654
No 34
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.049 Score=48.18 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=34.2
Q ss_pred ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEe
Q psy5005 27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL 65 (125)
Q Consensus 27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~ 65 (125)
+++.+++.++|..|.++++..|||||+|-|+=.-.+++.
T Consensus 284 NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p 322 (681)
T COG2216 284 NVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIP 322 (681)
T ss_pred ceeecCcchhhhcCCccEEEecccCceeecchhhhheec
Confidence 789999999999999999999999999998765555443
No 35
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=59.12 E-value=5.3 Score=28.60 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=12.1
Q ss_pred EEeeccccceeCc
Q psy5005 45 LLSDKTGTLTQNS 57 (125)
Q Consensus 45 i~sDKTGTLT~n~ 57 (125)
+++|..||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999998
No 36
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=31.63 E-value=35 Score=25.93 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.1
Q ss_pred hhhccCceEEEeeccccceeCceEEEE
Q psy5005 36 PEELGRISYLLSDKTGTLTQNSMVFRK 62 (125)
Q Consensus 36 ~E~LG~v~~i~sDKTGTLT~n~m~v~~ 62 (125)
.+.+.++..+++|-=|+||.|++.+..
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ly~~~ 28 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGKLYYDE 28 (170)
T ss_pred hhhhhhceEEEEeccceeecCeEEEcC
Confidence 356778999999999999999997754
No 37
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=29.26 E-value=26 Score=25.32 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=18.8
Q ss_pred eCCchhhhccCceEEEeeccccce
Q psy5005 31 RSTTIPEELGRISYLLSDKTGTLT 54 (125)
Q Consensus 31 r~~~~~E~LG~v~~i~sDKTGTLT 54 (125)
=.+.+.+.+|.=.|+|.|+||+++
T Consensus 62 L~G~Iv~~l~~d~Y~F~D~TG~I~ 85 (126)
T TIGR00156 62 LRGNIISHIGDDRYVFRDKSGEIN 85 (126)
T ss_pred EEEEEEEEeCCceEEEECCCCCEE
Confidence 355666777888899999999854
No 38
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=29.04 E-value=41 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.3
Q ss_pred hhccCceEEEeeccccceeCceEEEE
Q psy5005 37 EELGRISYLLSDKTGTLTQNSMVFRK 62 (125)
Q Consensus 37 E~LG~v~~i~sDKTGTLT~n~m~v~~ 62 (125)
|.+..++.+.+|-=|+||.|.+.+..
T Consensus 2 ~~~~~i~~~v~d~dGv~tdg~~~~~~ 27 (169)
T TIGR02726 2 EQAKNIKLVILDVDGVMTDGRIVIND 27 (169)
T ss_pred CccccCeEEEEeCceeeECCeEEEcC
Confidence 55677999999999999999987754
No 39
>PRK10053 hypothetical protein; Provisional
Probab=28.98 E-value=26 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=18.8
Q ss_pred eCCchhhhccCceEEEeeccccce
Q psy5005 31 RSTTIPEELGRISYLLSDKTGTLT 54 (125)
Q Consensus 31 r~~~~~E~LG~v~~i~sDKTGTLT 54 (125)
=.+.+...+|.=.|+|.|.||++.
T Consensus 66 L~G~Iv~~lg~d~Y~F~D~tG~I~ 89 (130)
T PRK10053 66 LRGNLIDHKGDDRYVFRDKSGEIN 89 (130)
T ss_pred EEEEEEEEeCCceEEEECCCCcEE
Confidence 345566777888899999999854
No 40
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=27.81 E-value=24 Score=24.48 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=19.4
Q ss_pred EeCCchhhhccCceEEEeeccccce
Q psy5005 30 VRSTTIPEELGRISYLLSDKTGTLT 54 (125)
Q Consensus 30 vr~~~~~E~LG~v~~i~sDKTGTLT 54 (125)
.=.+.+.+.+|.=.|+|.|.||++.
T Consensus 38 ~L~G~Iv~~l~~d~Y~F~D~TG~I~ 62 (103)
T PF04076_consen 38 TLEGNIVKQLGDDKYLFRDATGEIE 62 (103)
T ss_dssp EEEEEEEEEEETTEEEEEETTEEEE
T ss_pred EEEEEEEEEecCCEEEEECCCCcEE
Confidence 3455666777889999999999754
No 41
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=26.93 E-value=43 Score=15.01 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=8.1
Q ss_pred ccccceeCceEE
Q psy5005 49 KTGTLTQNSMVF 60 (125)
Q Consensus 49 KTGTLT~n~m~v 60 (125)
|.||.|.|.+.+
T Consensus 1 K~gTPTMGGi~~ 12 (13)
T PF10555_consen 1 KSGTPTMGGIVF 12 (13)
T ss_pred CCCCccceeEEE
Confidence 568888776543
Done!