Query psy5005
Match_columns 125
No_of_seqs 138 out of 1181
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.4 7.4E-14 2.5E-18 126.1 5.6 64 3-70 345-408 (1034)
2 3j08_A COPA, copper-exporting 99.4 9.9E-14 3.4E-18 120.0 4.9 80 4-89 292-371 (645)
3 3rfu_A Copper efflux ATPase; a 99.4 9.1E-14 3.1E-18 122.2 4.4 80 4-89 386-465 (736)
4 3j09_A COPA, copper-exporting 99.4 1.3E-13 4.4E-18 120.6 4.5 80 4-89 370-449 (723)
5 2zxe_A Na, K-ATPase alpha subu 99.4 2E-13 6.8E-18 123.3 4.3 62 3-68 340-401 (1028)
6 3ar4_A Sarcoplasmic/endoplasmi 99.4 3.3E-13 1.1E-17 121.3 4.9 60 3-66 311-370 (995)
7 3b8c_A ATPase 2, plasma membra 99.3 2.4E-13 8.2E-18 121.6 -1.2 57 3-63 288-344 (885)
8 1mhs_A Proton pump, plasma mem 99.3 6.2E-13 2.1E-17 119.5 0.3 60 3-66 337-396 (920)
9 2yj3_A Copper-transporting ATP 98.7 4.4E-12 1.5E-16 97.6 0.0 59 27-91 13-71 (263)
10 3a1c_A Probable copper-exporti 98.9 1.5E-09 5.1E-14 83.8 4.2 69 15-89 9-77 (287)
11 3skx_A Copper-exporting P-type 98.3 4.6E-07 1.6E-11 67.4 4.3 58 30-89 1-58 (280)
12 2kmv_A Copper-transporting ATP 96.5 0.0012 4.1E-08 48.9 2.3 39 51-89 1-41 (185)
13 2arf_A Wilson disease ATPase; 93.0 0.059 2E-06 38.7 2.8 38 53-90 1-40 (165)
14 4fe3_A Cytosolic 5'-nucleotida 92.1 0.039 1.3E-06 42.1 0.9 35 27-62 20-63 (297)
15 1svj_A Potassium-transporting 91.8 0.059 2E-06 38.8 1.5 40 49-89 13-52 (156)
16 3ewi_A N-acylneuraminate cytid 34.2 15 0.00051 25.8 1.3 23 37-59 4-26 (168)
17 1nnx_A Protein YGIW; structura 29.5 13 0.00046 25.0 0.4 25 30-54 41-65 (109)
18 3mn1_A Probable YRBI family ph 24.8 40 0.0014 23.3 2.2 27 34-60 11-37 (189)
19 2hsz_A Novel predicted phospha 24.1 34 0.0012 24.2 1.8 26 32-57 13-38 (243)
20 3e8m_A Acylneuraminate cytidyl 23.6 49 0.0017 21.8 2.4 20 40-59 2-21 (164)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.43 E-value=7.4e-14 Score=126.08 Aligned_cols=64 Identities=31% Similarity=0.380 Sum_probs=59.4
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccC
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSY 70 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~ 70 (125)
+|++.+++++++++++|.++ ++++|+++++|+||++++||+|||||||+|+|.+.++++.+..+
T Consensus 345 ~Lp~~vti~la~~~~rmak~----~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~ 408 (1034)
T 3ixz_A 345 GLLATVTVCLSLTAKRLASK----NCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIH 408 (1034)
T ss_pred ccHHHHHHHHHHHHHHHhhC----CeEecChHHHHhhcCCcEEEcCCCCCcccCeEEEEEEEECCccc
Confidence 57889999999999999998 89999999999999999999999999999999999998876543
No 2
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.41 E-value=9.9e-14 Score=120.04 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=70.4
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK 83 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~ 83 (125)
|.+.++++...+..++.++ |+++|+.+++|++|+++++|+|||||||+|+|.+.+++..+ .++++...+.+.++
T Consensus 292 L~la~p~a~~~~~~~~a~~----gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~l~~aa~~e 365 (645)
T 3j08_A 292 FGLATPTALTVGMGKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN--GDERELLRLAAIAE 365 (645)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC----CeEecCchHHHHhhCCCEEEEcCcccccCCCeEEEEEEeCC--CCHHHHHHHHHHHh
Confidence 4566778888889999988 89999999999999999999999999999999999998764 34566788888899
Q ss_pred hHccCC
Q psy5005 84 FTYENM 89 (125)
Q Consensus 84 ~~~~~p 89 (125)
..++||
T Consensus 366 ~~s~hP 371 (645)
T 3j08_A 366 RRSEHP 371 (645)
T ss_dssp TTCCSH
T ss_pred hcCCCh
Confidence 999998
No 3
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.41 E-value=9.1e-14 Score=122.24 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=70.6
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK 83 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~ 83 (125)
|.+.++++...+..++.++ |+++|+.+++|.+|+++++|+|||||||+|+|.+.+++..+ +.+++...+.++++
T Consensus 386 L~la~p~a~~~~~~~~a~~----gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~--~~~~~~l~~aa~le 459 (736)
T 3rfu_A 386 LGLATPMSIMVGVGKGAQS----GVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDD--FVEDNALALAAALE 459 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEEESS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc----ceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEEecC--CCHHHHHHHHHHHh
Confidence 4556778888899999988 99999999999999999999999999999999999998433 45667888889999
Q ss_pred hHccCC
Q psy5005 84 FTYENM 89 (125)
Q Consensus 84 ~~~~~p 89 (125)
+.++||
T Consensus 460 ~~s~hP 465 (736)
T 3rfu_A 460 HQSEHP 465 (736)
T ss_dssp HSSCCH
T ss_pred hcCCCh
Confidence 999998
No 4
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.40 E-value=1.3e-13 Score=120.59 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=70.4
Q ss_pred eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK 83 (125)
Q Consensus 4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~ 83 (125)
|.+.++++...+..++.++ |+++|+..++|.||+++++|+|||||||+|+|.+.+++..+ ..+++...+.+.++
T Consensus 370 L~la~p~a~~~~~~~~a~~----gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~--~~~~~~l~~aa~~e 443 (723)
T 3j09_A 370 FGLATPTALTVGMGKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN--GDERELLRLAAIAE 443 (723)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEESS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC----CeEEeChHHHHHhhcCCEEEEcCCCccccCceEEEEEEeCC--CCHHHHHHHHHHHh
Confidence 4566778888889999988 89999999999999999999999999999999999998764 34566778888999
Q ss_pred hHccCC
Q psy5005 84 FTYENM 89 (125)
Q Consensus 84 ~~~~~p 89 (125)
..++||
T Consensus 444 ~~s~hP 449 (723)
T 3j09_A 444 RRSEHP 449 (723)
T ss_dssp TTCCSH
T ss_pred ccCCCc
Confidence 999998
No 5
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.37 E-value=2e-13 Score=123.31 Aligned_cols=62 Identities=32% Similarity=0.426 Sum_probs=57.9
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV 68 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~ 68 (125)
+|++.+++++++++++|.++ |+++|+++++|+||++++||+|||||||+|+|.|.+++..+.
T Consensus 340 ~Lp~~vti~l~~~~~~mak~----~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~ 401 (1028)
T 2zxe_A 340 GLLATVTVCLTLTAKRMARK----NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQ 401 (1028)
T ss_dssp THHHHHHHHHHHHHHHHHTT----TEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTE
T ss_pred hHHHHHHHHHHHHHHHHhhC----CceeccchHhhhhcCceEEeccCCCCCCCCeEEEEEEEECCe
Confidence 57888999999999999998 899999999999999999999999999999999999987653
No 6
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.36 E-value=3.3e-13 Score=121.25 Aligned_cols=60 Identities=37% Similarity=0.422 Sum_probs=55.9
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEec
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLG 66 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~ 66 (125)
+|++.++++++++.++|+++ |+++|+++++|+||++++||+|||||||+|+|.+.+++..
T Consensus 311 ~Lp~~vt~~la~~~~~ma~~----~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~ 370 (995)
T 3ar4_A 311 GLPAVITTCLALGTRRMAKK----NAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFII 370 (995)
T ss_dssp THHHHHHHHHHHHHHHHHHT----TEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEE
T ss_pred chHHHHHHHHHHHHHHhccC----CcEeccchhhhhhcCceEEEecCCCCcccCceEEEEEEec
Confidence 46778889999999999998 8999999999999999999999999999999999998764
No 7
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.27 E-value=2.4e-13 Score=121.61 Aligned_cols=57 Identities=30% Similarity=0.357 Sum_probs=52.2
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEE
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~ 63 (125)
+|++.++++++++.++|.++ |+++|+++++|+||+++++|+|||||||+|+|.+.+.
T Consensus 288 aLp~~vti~la~g~~r~ak~----~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~ 344 (885)
T 3b8c_A 288 AMPTVLSVTMAIGSHRLSQQ----GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKN 344 (885)
T ss_dssp STTTHHHHTTTHHHHHHTTT----SCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhC----CeEeCCchHHHHHhCCCEEEECCCCCcccCceEEEEE
Confidence 46677888889999999998 8999999999999999999999999999999999754
No 8
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.25 E-value=6.2e-13 Score=119.46 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=54.9
Q ss_pred eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEec
Q psy5005 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLG 66 (125)
Q Consensus 3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~ 66 (125)
+|++.++++++++.++|.++ |+++|++.++|+||++++||+|||||||+|+|.+.+++..
T Consensus 337 aLp~~vti~la~g~~~mak~----~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~ 396 (920)
T 1mhs_A 337 GLPAVVTTTMAVGAAYLAKK----KAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTV 396 (920)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----TCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCC
T ss_pred hHHHHHHHHHHHHHHHHHhC----CeEEecCchhhhhccCcEEEECCCCCccccceeEEEEeec
Confidence 46677888889999999998 8999999999999999999999999999999999987654
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=98.75 E-value=4.4e-12 Score=97.59 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=52.5
Q ss_pred ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCCCC
Q psy5005 27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMSA 91 (125)
Q Consensus 27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p~~ 91 (125)
|+++|+..++|.++++++++||||||||+|++.+.+++ ..+.+..+.++++..+.||-.
T Consensus 13 gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~------~~~~~l~~~~~~e~~s~hp~a 71 (263)
T 2yj3_A 13 GMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI------GDSLSLAYAASVEALSSHPIA 71 (263)
Confidence 89999999999999999999999999999999998864 345677888899999999844
No 10
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=98.85 E-value=1.5e-09 Score=83.80 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=55.5
Q ss_pred HHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 15 YSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 15 ~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
+++.+.+. |+++|+..++|.++.++.++||||||||.+.+.+.+++..+. ..+.+..+.+++++.+.||
T Consensus 9 ~~~~~~~~----gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~--~~~~~l~~~~~~e~~s~hp 77 (287)
T 3a1c_A 9 GSRKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG--DERELLRLAAIAERRSEHP 77 (287)
T ss_dssp -----CCC----CEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSS--CHHHHHHHHHHHTTTCCSH
T ss_pred hHHHHHHC----CEEEeCcHHHHHhhcCCEEEEeCCCCCcCCCEEEEEEEeCCC--CHHHHHHHHHHHhhcCCCH
Confidence 45666676 999999999999999999999999999999999998877654 4556777777888888887
No 11
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=98.31 E-value=4.6e-07 Score=67.44 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=44.5
Q ss_pred EeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 30 VRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 30 vr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
+|+..++|.++.++.++||++|||+.|++.+.+++..+. ..+.+..+...+++.+.|+
T Consensus 1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~~--~~~~~~~~~~~~~~~s~~~ 58 (280)
T 3skx_A 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH--SEDELLQIAASLEARSEHP 58 (280)
T ss_dssp ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESSS--CHHHHHHHHHHHHTTCCSH
T ss_pred CCChHHHHHhcCCCEEEEeCCCcCCCCcEEEEEEEecCC--CHHHHHHHHHHhhccCCCH
Confidence 588999999999999999999999999999999877654 4455666666666666664
No 12
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A*
Probab=96.46 E-value=0.0012 Score=48.93 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=32.1
Q ss_pred ccceeCceEEEEEEecC--ccCCcCcHHHHHHHHHhHccCC
Q psy5005 51 GTLTQNSMVFRKLHLGT--VSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 51 GTLT~n~m~v~~~~~~~--~~~~~~~~~~i~~~l~~~~~~p 89 (125)
||||+|++.+.++.... ..+..+.+..+..++|+.+.||
T Consensus 1 GTLT~G~p~V~~v~~~~~~~~~~~~~lL~laaa~E~~SeHP 41 (185)
T 2kmv_A 1 SFTMHGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHP 41 (185)
T ss_dssp CCCCSCCCEEEEEEECSCTTTSCHHHHHHHHHHGGGSSSCH
T ss_pred CCCcCCcEEEEEEEecCCcCCCCHHHHHHHHHHHHccCCCH
Confidence 89999999999987542 2245567889999999999999
No 13
>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} PDB: 2koy_A
Probab=92.99 E-value=0.059 Score=38.67 Aligned_cols=38 Identities=8% Similarity=-0.179 Sum_probs=29.8
Q ss_pred ceeCceEEEEEEecCc--cCCcCcHHHHHHHHHhHccCCC
Q psy5005 53 LTQNSMVFRKLHLGTV--SYGPDTFDEVRDLLKFTYENMS 90 (125)
Q Consensus 53 LT~n~m~v~~~~~~~~--~~~~~~~~~i~~~l~~~~~~p~ 90 (125)
||+|++.|.++..... .+..+.+..+.+++|+.++||-
T Consensus 1 LT~G~p~V~~v~~~~~~~~~~~~~lL~laaslE~~SeHPl 40 (165)
T 2arf_A 1 AGHMVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPL 40 (165)
T ss_dssp CCCCCCCEEEEEECCCTTTSCHHHHHHHHHHHHTTSCSTT
T ss_pred CCCceeEEEEEEeeCCcCCCCHHHHHHHHHHHHccCCChH
Confidence 7999999999765421 1345668899999999999993
No 14
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=92.14 E-value=0.039 Score=42.06 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.6
Q ss_pred ceEEeCCchhhhc---------cCceEEEeeccccceeCceEEEE
Q psy5005 27 DTVVRSTTIPEEL---------GRISYLLSDKTGTLTQNSMVFRK 62 (125)
Q Consensus 27 g~lvr~~~~~E~L---------G~v~~i~sDKTGTLT~n~m~v~~ 62 (125)
++++|+...+|.+ .++. +++|||||||+.......
T Consensus 20 ~v~ikd~~~~e~~i~~~~kgg~~kL~-VV~DfdgTLT~~~~~g~~ 63 (297)
T 4fe3_A 20 SVRIKNPTRVEEIICGLIKGGAAKLQ-IITDFNMTLSRFSYNGKR 63 (297)
T ss_dssp TEECSCHHHHHHHHHHHHHHHHHHEE-EEECCTTTTBCSEETTEE
T ss_pred CeEEcChHHHHHHHHHHHhCcchhEE-EEEcCCCCceeeccCCeE
Confidence 7899999888873 2333 577999999987654333
No 15
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=91.76 E-value=0.059 Score=38.75 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=26.8
Q ss_pred ccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005 49 KTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM 89 (125)
Q Consensus 49 KTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p 89 (125)
..||+|-|+..+.+++..+ .++++++..+++++|+.+.||
T Consensus 13 ~~~tit~gnr~vt~v~~~~-g~~e~elL~lAAs~E~~SeHP 52 (156)
T 1svj_A 13 SSGHGGRHNRQASEFIPAQ-GVDEKTLADAAQLASLADETP 52 (156)
T ss_dssp --------CEEEEEEEECT-TSCHHHHHHHHHHTTSSCCSH
T ss_pred CCCceecCCCeEEEEEecC-CCCHHHHHHHHHHHhCcCCCH
Confidence 4699999999999987643 356778899999999999999
No 16
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=34.17 E-value=15 Score=25.76 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=18.0
Q ss_pred hhccCceEEEeeccccceeCceE
Q psy5005 37 EELGRISYLLSDKTGTLTQNSMV 59 (125)
Q Consensus 37 E~LG~v~~i~sDKTGTLT~n~m~ 59 (125)
|.+..+..|++|-=||||.+.+.
T Consensus 4 ~~~~~ikliv~D~DGtL~d~~~~ 26 (168)
T 3ewi_A 4 EKLKEIKLLVCNIDGCLTNGHIY 26 (168)
T ss_dssp ---CCCCEEEEECCCCCSCSCCB
T ss_pred hhHhcCcEEEEeCccceECCcEE
Confidence 56678999999999999998764
No 17
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=29.52 E-value=13 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=19.3
Q ss_pred EeCCchhhhccCceEEEeeccccce
Q psy5005 30 VRSTTIPEELGRISYLLSDKTGTLT 54 (125)
Q Consensus 30 vr~~~~~E~LG~v~~i~sDKTGTLT 54 (125)
.=.+.+.+.+|.=.|+|.|.||+++
T Consensus 41 ~L~G~Iv~~~~~d~Y~F~D~TG~I~ 65 (109)
T 1nnx_A 41 TLRGNIVERISDDLYVFKDASGTIN 65 (109)
T ss_dssp EEEEEEEEEEETTEEEEEETTEEEE
T ss_pred EEEEEEEEEeCCCeEEEECCCccEE
Confidence 3355666777888999999999754
No 18
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=24.81 E-value=40 Score=23.34 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.3
Q ss_pred chhhhccCceEEEeeccccceeCceEE
Q psy5005 34 TIPEELGRISYLLSDKTGTLTQNSMVF 60 (125)
Q Consensus 34 ~~~E~LG~v~~i~sDKTGTLT~n~m~v 60 (125)
+..+.+..++.+++|-=|||+.+...+
T Consensus 11 ~~~~~~~~ik~vifD~DGTL~d~~~~~ 37 (189)
T 3mn1_A 11 DLMQRGKAIKLAVFDVDGVLTDGRLYF 37 (189)
T ss_dssp HHHHHHHTCCEEEECSTTTTSCSEEEE
T ss_pred HHHHHHHhCCEEEEcCCCCcCCccEee
Confidence 345667789999999999999986543
No 19
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=24.12 E-value=34 Score=24.18 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=17.5
Q ss_pred CCchhhhccCceEEEeeccccceeCc
Q psy5005 32 STTIPEELGRISYLLSDKTGTLTQNS 57 (125)
Q Consensus 32 ~~~~~E~LG~v~~i~sDKTGTLT~n~ 57 (125)
....-..+..++.++||.-|||....
T Consensus 13 ~~~~~~~~~~~k~iiFDlDGTL~d~~ 38 (243)
T 2hsz_A 13 ENLYFQGMTQFKLIGFDLDGTLVNSL 38 (243)
T ss_dssp ------CCSSCSEEEECSBTTTEECH
T ss_pred ccceecCCccCCEEEEcCCCcCCCCH
Confidence 34445667788999999999998764
No 20
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=23.59 E-value=49 Score=21.77 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.6
Q ss_pred cCceEEEeeccccceeCceE
Q psy5005 40 GRISYLLSDKTGTLTQNSMV 59 (125)
Q Consensus 40 G~v~~i~sDKTGTLT~n~m~ 59 (125)
..++.+++|-=|||+.+...
T Consensus 2 ~~ik~vifD~DGTL~~~~~~ 21 (164)
T 3e8m_A 2 KEIKLILTDIDGVWTDGGMF 21 (164)
T ss_dssp CCCCEEEECSTTTTSSSEEE
T ss_pred CcceEEEEcCCCceEcCcEE
Confidence 35789999999999997653
Done!