RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5005
(125 letters)
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 99.0 bits (247), Expect = 2e-25
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 4 LRVNLDMGKAFYSWSMQRDPDMKD------TVVRSTTIPEELGRISYLLSDKTGTLTQNS 57
L V+L++ K+ ++ + D M VR++ + EELG++ Y+ SDKTGTLTQN
Sbjct: 315 LYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNI 374
Query: 58 MVFRKLHLGTVSYGPDTFDEVRDLLK 83
M F+K + VSYG D F E++D ++
Sbjct: 375 MEFKKCSIAGVSYG-DGFTEIKDGIR 399
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 76.2 bits (188), Expect = 2e-17
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
L + + A + + K +VR+ EELG++ YL SDKTGTLT+N M +
Sbjct: 205 ALPAAVTVALAVGDARLAK----KGILVRNLNALEELGKVDYLCSDKTGTLTKNKMTLQG 260
Query: 63 LHLGTVSYGPDTFDEVRDL 81
+++ + D
Sbjct: 261 VYIDGGKEDNSSSLVACDN 279
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 71.6 bits (176), Expect = 9e-16
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
GL + + A + M +D + VRS E LG + + SDKTGTLTQN M +K
Sbjct: 313 GLPAVVTIALALGAQRMAKDNAI----VRSLNAIETLGSVDVICSDKTGTLTQNKMTVKK 368
Query: 63 LHLGTVS--YGPDTFDEVRDLLKFTYENMSATADSNTPHKQ 101
+++ + LL+F +A +S TP K
Sbjct: 369 IYINGGGKDIDDKDLKDSPALLRFLL--AAALCNSVTPEKN 407
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 49.9 bits (119), Expect = 4e-08
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 1 MDGLRVNLDMGKAFYSWSMQRDPDMKDTV------VRSTTIPEELGRISYLLSDKTGTLT 54
M+ +RV G+A++ M RD M D R+ I E+LG+I Y+ SDKTGTLT
Sbjct: 413 MELVRV----GQAYF---MIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLT 465
Query: 55 QNSMVFRKLHLGTVSY 70
+N M F+ + V Y
Sbjct: 466 ENKMEFQCASIWGVDY 481
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 39.4 bits (92), Expect = 2e-04
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
K+ +VR E LG + + SDKTGTLT N M K+
Sbjct: 273 KNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKV 310
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 39.0 bits (91), Expect = 2e-04
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSM 58
K+ +V++ E LG S + SDKTGTLTQN M
Sbjct: 328 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 360
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 38.5 bits (90), Expect = 3e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 25 MKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKF 84
K V R T I EEL + L SDKTGTLT N KL + + + FD+ D+L +
Sbjct: 270 KKAIVTRLTAI-EELAGMDILCSDKTGTLTLN-----KLSIDEILPFFNGFDK-DDVLLY 322
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 37.1 bits (86), Expect = 0.001
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 2 DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFR 61
+GL + + + A+ M +D + +VR E +G + + SDKTGTLTQN M
Sbjct: 342 EGLPLAVTIALAYSMKKMMKD----NNLVRHLAACETMGSATAICSDKTGTLTQNVMSVV 397
Query: 62 KLHLGTVSYGPDTFDE-----VRDLL 82
+ ++G + VR++L
Sbjct: 398 QGYIGEQRFNVRDVLRNVPKHVRNIL 423
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 36.9 bits (85), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFT 85
++ +VR E LG ++ + SDKTGT+TQ M+ R++ + +G + D D
Sbjct: 343 RNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIP--RFGTISIDNSDDAFNPN 400
Query: 86 YENMS 90
N+S
Sbjct: 401 EGNVS 405
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 36.3 bits (84), Expect = 0.002
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
K +VR E LG ++ + SDKTGTLT+N M K+
Sbjct: 308 KRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKI 345
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 33.8 bits (78), Expect = 0.014
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 29 VVRSTTIPEELGRISYLLSDKTGTLTQNS 57
+++ E L +I + DKTGTLT
Sbjct: 233 LIKGGAALEALAKIKTVAFDKTGTLTTGR 261
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 33.7 bits (78), Expect = 0.017
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 29 VVRSTTIPEELGRISYLLSDKTGTLTQ 55
+++ E L ++ ++ DKTGTLT+
Sbjct: 392 LIKGGEALERLAKVDTVVFDKTGTLTE 418
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 33.5 bits (77), Expect = 0.018
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 40 GRISYLLSDKTGTLTQNSMVFR 61
G+I DKTGTLT++ + R
Sbjct: 446 GKIDVCCFDKTGTLTEDGLDLR 467
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 33.0 bits (76), Expect = 0.024
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 29 VVRSTTIPEELGRISYLLSDKTGTLTQNSMV 59
+++ E+L ++ ++ DKTGTLT
Sbjct: 233 LIKGGDALEKLAKVKTVVFDKTGTLTTGKPT 263
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 32.3 bits (74), Expect = 0.051
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E+LGR++ + DKTGTLT+
Sbjct: 431 EQLGRVTTVAFDKTGTLTE 449
>gnl|CDD|184229 PRK13672, PRK13672, hypothetical protein; Provisional.
Length = 71
Score = 29.8 bits (68), Expect = 0.094
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 10 MGKAFYSWSM-QRDPDMKDTVVR 31
M K+FY + M QR+P D
Sbjct: 1 MRKSFYHYLMTQRNPKSNDPKAI 23
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 324
Score = 29.7 bits (67), Expect = 0.37
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 21/68 (30%)
Query: 7 NLDMGKAFYSWSMQRDPDMK----DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
NL+ KA Y + D ++K D TI ++L I F +
Sbjct: 21 NLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI-----------------FAQ 63
Query: 63 LHLGTVSY 70
L G S
Sbjct: 64 LQFGNRSV 71
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 28.8 bits (65), Expect = 0.85
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 37 EELGRISYLLSDKTGTLTQNSMV 59
E I ++ DKTGTLTQ
Sbjct: 279 ERAANIDTVVFDKTGTLTQGKPT 301
>gnl|CDD|226885 COG4479, COG4479, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 74
Score = 27.0 bits (60), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 10 MGKAFYSWSM-QRDPDMKDTVVR 31
M K+FY + M R+P KD
Sbjct: 1 MRKSFYHFLMTYRNPKSKDDKTE 23
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 45 LLSDKTGTLTQNSMVF---RKLHLGTVSYGPDTFDEVRDLLKFTY 86
+ D GTLT + + G + +LL+
Sbjct: 1 AVFDLDGTLTDSDTALLLLLEALAEDRRLGLLGLSDAEELLELVV 45
>gnl|CDD|225939 COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino
acid transport and metabolism].
Length = 208
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 7 NLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEEL 39
NL GK Y D +MK+ + I EL
Sbjct: 44 NLTRGKKGYE---DYDDEMKEILEELQKIKAEL 73
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 27.9 bits (62), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 26 KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
K +V+ + + G + L +DKTGTLTQ+ + K
Sbjct: 320 KKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEK 356
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 27.9 bits (63), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 56 NSMVFRKLHL-GTVSYGPDTFDEVRDLLK 83
N +V ++ L G++ Y + F+EV DLL
Sbjct: 283 NDLVLKEKTLTGSICYTREDFEEVIDLLA 311
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 27.7 bits (62), Expect = 2.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 39 LGRISYLLSDKTGTLTQNSMV 59
G + L +DKTGTLTQ+ ++
Sbjct: 366 FGAMDVLCTDKTGTLTQDRII 386
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 27.3 bits (61), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 39 LGRISYLLSDKTGTLTQNSMV 59
G + L +DKTGTLTQ+ +V
Sbjct: 368 FGAMDILCTDKTGTLTQDKIV 388
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 26.9 bits (60), Expect = 3.0
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 72 PDTFDEVRDLLK-FTYENMSATADSNTPHKQMVIGSNKIRRSDHK 115
P T +E+ ++K ++ENM N S R+
Sbjct: 184 PLTEEELDKIVKHLSFENMKGNPCLNYSKLPKHEVSPFFRKGLVG 228
>gnl|CDD|189894 pfam01220, DHquinase_II, Dehydroquinase class II.
Length = 140
Score = 26.2 bits (59), Expect = 3.8
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 70 YGPDTFDEVRDLLKFTYENMSATAD---SN 96
YG T ++ L+ + + SN
Sbjct: 22 YGSTTLADIEARLRELAAELGVELEFFQSN 51
>gnl|CDD|216924 pfam02191, OLF, Olfactomedin-like domain.
Length = 250
Score = 26.4 bits (59), Expect = 4.0
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 29 VVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL--HLGTVSYGP 72
V RS ++ + RI Y TGT S+ F ++ + Y P
Sbjct: 185 VTRSYSLRDT--RIFYAYDTSTGTEEAPSIPFPNRYGYISMLDYNP 228
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 25.7 bits (56), Expect = 8.1
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 MGKAFYSWSMQRDPDMKDTVVRSTT--IPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT 67
+ K +S + +R+ ++KD + RSTT PE + Y+ D G S + + +LG
Sbjct: 439 INKGIWSRASRREYNLKDAISRSTTQVYPESWTAV-YVALDNVGMWNLRSQFWARQYLGQ 497
Query: 68 VSY 70
Y
Sbjct: 498 QFY 500
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,253,645
Number of extensions: 525229
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 35
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)