RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5005
(125 letters)
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 46.1 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 37 EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPD 73
EE+ + L SDKTGTLT N + K + G +
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVE 354
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 37 EELGRISYLLSDKTGTLTQNSMVFRK 62
E L + L SDKTGTLT+N +
Sbjct: 367 ESLAGVEILCSDKTGTLTKNKLSLHD 392
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 43.0 bits (102), Expect = 6e-06
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 37 EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDT 74
E LG S + SDKTGTLTQN M L + DT
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADT 412
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 41.9 bits (99), Expect = 2e-05
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 37 EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDT 74
E LG S + SDKTGTLTQN M + + DT
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADT 407
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 41.1 bits (97), Expect = 3e-05
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 37 EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYE 87
E LG S + SDKTGTLT N M K+ + G + TY
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYA 391
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.003
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 31/112 (27%)
Query: 10 MGKAFYS--------WSMQRDPDMKDT-------VVRSTTIPEELGRISYLLSDKTGTLT 54
MG Y W+ + D KDT +V + P L + +K +
Sbjct: 1631 MGMDLYKTSKAAQDVWN-RADNHFKDTYGFSILDIVINN--PVNL--TIHFGGEKGKRIR 1685
Query: 55 QN--SMVFRKLHLGTVSYGPDTFDEV-RDLLKFTYEN----MSATADSNT-P 98
+N +M+F + G + F E+ +T+ + +SAT T P
Sbjct: 1686 ENYSAMIFETIVDGKLKTEK-IFKEINEHSTSYTFRSEKGLLSATQ--FTQP 1734
Score = 34.6 bits (79), Expect = 0.005
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 34/127 (26%)
Query: 32 STTIPEELGRI-SYL----LSDKTGTLTQNSMVFRKLHLGTVS-Y------GP--DTFDE 77
TT+ + I +Y+ ++ + NS +FR + G G D F+E
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 78 VRDLLKFTY---------------ENMSATADSNTPHKQMVIGSNK-IRRSDHKPGT--- 118
+RDL + TY + T + + + + P
Sbjct: 173 LRDLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 119 VSLPVSV 125
+S+P+S
Sbjct: 232 LSIPISC 238
Score = 31.6 bits (71), Expect = 0.057
Identities = 30/216 (13%), Positives = 55/216 (25%), Gaps = 107/216 (49%)
Query: 4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGR--ISYLLSDKTGTL--TQN--- 56
+R N YS +M + + D +++ I +E+ SY + G L TQ
Sbjct: 1684 IREN-------YS-AMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 57 -----SM-VFRKL--------------H-LG----TVSY-GPDTFDEVRDLLKF---TYE 87
F L H LG S + + + +++ + T +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 88 N-------------MSATADS-------------------------------NTPHKQMV 103
M A N ++Q V
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 104 IG--------------SNKIRRSDHKPGTVSLPVSV 125
K+++ D + L S+
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKID----IIELQKSL 1886
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 29.0 bits (66), Expect = 0.35
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E + ++ DKTGTLT+
Sbjct: 8 ERAKDLQAVIFDKTGTLTE 26
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 29.0 bits (66), Expect = 0.36
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E +++ ++ DKTGTLT+
Sbjct: 27 EVAEKVTAVIFDKTGTLTK 45
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 28.6 bits (65), Expect = 0.49
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E +++ ++ DKTGTLT+
Sbjct: 321 EVAEKVTAVIFDKTGTLTK 339
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 28.6 bits (65), Expect = 0.51
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E +++ ++ DKTGTLT+
Sbjct: 399 EVAEKVTAVIFDKTGTLTK 417
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 28.7 bits (65), Expect = 0.59
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E + +++ L+ DKTGTLT+
Sbjct: 415 ERMEKVNTLVVDKTGTLTE 433
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 28.2 bits (64), Expect = 0.66
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 37 EELGRISYLLSDKTGTLTQ 55
E++ I ++ +KTGTLT
Sbjct: 23 EKIKEIDTIIFEKTGTLTY 41
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes,
LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS
phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Length = 234
Score = 26.9 bits (59), Expect = 2.0
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 12 KAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDK 49
K W D D+ D + + ELG + DK
Sbjct: 51 KQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDK 88
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus} SCOP: c.6.2.5
Length = 250
Score = 26.3 bits (59), Expect = 2.3
Identities = 5/24 (20%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 4 LRVNL--DMGKAFYSWSMQRDPDM 25
++V+L D G+++ +++ D ++
Sbjct: 1 MKVDLNADAGESYGAFAYGHDREI 24
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam
utilization protein, structural genomics; 1.70A
{Pyrococcus horikoshii} SCOP: c.6.2.5
Length = 255
Score = 26.3 bits (59), Expect = 2.5
Identities = 7/24 (29%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 4 LRVNL--DMGKAFYSWSMQRDPDM 25
+RV+L D+G++F + + D ++
Sbjct: 1 MRVDLNSDLGESFGRYKLGLDEEV 24
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein
translocase, cell membrane, cell outer fimbrium,
transmembrane, transport; 3.15A {Escherichia coli} PDB:
2vqi_A*
Length = 493
Score = 25.6 bits (56), Expect = 5.1
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 15 YSWSMQRDPDMKDTVVR-STTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG 71
S S + + ++P G SY S + + G SY
Sbjct: 381 LSASRSKYLGRDNDSAYLRISVPLGTGTASYSGSMSNDRYVNMAGYTDTFNDGLDSYS 438
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A
{Pseudomonas aeruginosa} PDB: 2xu2_A*
Length = 252
Score = 25.6 bits (57), Expect = 5.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 7 NLDMGKAFYSWSMQRDPDM 25
N DMG++F +W M D
Sbjct: 12 NCDMGESFGAWRMGDDVHS 30
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 24.8 bits (55), Expect = 8.3
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 8 LDMGKAFY---SWSMQRDPDMKDTVVRSTTIPEELGRIS 43
LDMG F R P +V S TIPE+L
Sbjct: 163 LDMG--FITDVDQIAARMPKDLQMLVFSATIPEKLKPFL 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,892,375
Number of extensions: 100927
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 22
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)