RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5005
         (125 letters)



>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 380

 Score = 33.2 bits (75), Expect = 0.005
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 10/58 (17%)

Query: 1  MDGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSM 58
          +DG+ ++    +  +  S         TV         LG  S++  +         +
Sbjct: 8  VDGVFLS---EERCFDVSAL-------TVYELLMDKCYLGLHSHIDWETLTDNDIQDI 55


>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
          thermophilus [TaxId: 274]}
          Length = 250

 Score = 26.5 bits (58), Expect = 0.91
 Identities = 4/20 (20%), Positives = 13/20 (65%)

Query: 6  VNLDMGKAFYSWSMQRDPDM 25
          +N D G+++ +++   D ++
Sbjct: 5  LNADAGESYGAFAYGHDREI 24


>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 254

 Score = 26.0 bits (57), Expect = 1.3
 Identities = 7/24 (29%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 4  LRVNL--DMGKAFYSWSMQRDPDM 25
          +RV+L  D+G++F  + +  D ++
Sbjct: 1  MRVDLNSDLGESFGRYKLGLDEEV 24


>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.4 bits (52), Expect = 4.6
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 8  LDMGKAFY-SWSMQRDPDMKDTVV 30
          +D+   FY    M  +P++KD  +
Sbjct: 7  VDL-DCFYAQVEMISNPELKDKPL 29


>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus
           [TaxId: 5724]}
          Length = 146

 Score = 24.0 bits (51), Expect = 6.0
 Identities = 3/14 (21%), Positives = 5/14 (35%)

Query: 70  YGPDTFDEVRDLLK 83
           Y  D F  +   + 
Sbjct: 120 YSSDGFPTMFASIS 133


>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 209

 Score = 23.6 bits (50), Expect = 7.1
 Identities = 4/24 (16%), Positives = 8/24 (33%), Gaps = 2/24 (8%)

Query: 8  LDMGKAFY-SWSMQRDPDMKDTVV 30
          +D    F+       +P  K   +
Sbjct: 10 VDF-DYFFAQVEEVLNPQYKGKPL 32


>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus
          solfataricus, DNA polymerase IV [TaxId: 2287]}
          Length = 240

 Score = 23.8 bits (50), Expect = 7.5
 Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 2/24 (8%)

Query: 8  LDMGKAFY-SWSMQRDPDMKDTVV 30
          +D    FY       +P +K   V
Sbjct: 6  VDF-DYFYAQVEEVLNPSLKGKPV 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 455,770
Number of extensions: 19006
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 9
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)