Query psy5010
Match_columns 178
No_of_seqs 111 out of 1021
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:33:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1442|consensus 99.9 2E-25 4.3E-30 173.8 9.2 175 1-175 167-341 (347)
2 KOG1441|consensus 99.9 6.7E-23 1.5E-27 165.6 7.6 165 3-169 146-315 (316)
3 PF03151 TPT: Triose-phosphate 99.9 4.3E-21 9.3E-26 140.5 12.1 142 20-161 1-153 (153)
4 TIGR00817 tpt Tpt phosphate/ph 99.9 1.9E-21 4.2E-26 157.4 10.9 163 5-167 130-299 (302)
5 PTZ00343 triose or hexose phos 99.8 7.9E-20 1.7E-24 151.1 13.6 160 4-163 178-350 (350)
6 KOG1444|consensus 99.8 6.9E-20 1.5E-24 146.0 10.2 159 13-171 151-310 (314)
7 PF08449 UAA: UAA transporter 99.8 1.5E-17 3.3E-22 134.9 12.9 148 19-167 154-303 (303)
8 PRK10532 threonine and homoser 99.7 2.6E-17 5.6E-22 132.9 12.9 141 15-165 144-285 (293)
9 COG5070 VRG4 Nucleotide-sugar 99.7 5.3E-18 1.1E-22 129.2 7.2 150 18-168 154-303 (309)
10 PRK11453 O-acetylserine/cystei 99.7 1.6E-16 3.4E-21 128.7 14.8 150 15-164 139-290 (299)
11 PLN00411 nodulin MtN21 family 99.7 8.4E-16 1.8E-20 127.3 14.6 151 18-172 188-339 (358)
12 PRK11272 putative DMT superfam 99.7 7.1E-16 1.5E-20 124.5 13.3 141 14-162 145-286 (292)
13 PRK11689 aromatic amino acid e 99.7 3E-15 6.5E-20 121.1 14.3 134 17-162 154-288 (295)
14 TIGR00950 2A78 Carboxylate/Ami 99.6 3.2E-15 6.8E-20 118.1 13.2 137 13-156 122-259 (260)
15 KOG1581|consensus 99.6 4.5E-14 9.7E-19 112.0 11.1 150 15-165 168-317 (327)
16 KOG1580|consensus 99.5 6.9E-14 1.5E-18 107.7 7.2 160 4-164 149-316 (337)
17 PRK15430 putative chlorampheni 99.5 2.7E-12 5.9E-17 103.8 14.4 141 22-169 152-293 (296)
18 PF00892 EamA: EamA-like trans 99.4 6.2E-13 1.3E-17 93.1 8.0 124 29-160 1-125 (126)
19 COG2510 Predicted membrane pro 99.4 2.6E-12 5.7E-17 90.0 10.5 134 21-160 5-138 (140)
20 KOG1443|consensus 99.4 1.2E-12 2.6E-17 104.1 9.0 155 5-159 149-313 (349)
21 COG5006 rhtA Threonine/homoser 99.4 2.3E-12 5E-17 100.1 9.7 143 13-164 142-285 (292)
22 PF06027 DUF914: Eukaryotic pr 99.4 5.6E-12 1.2E-16 103.3 11.8 144 17-166 166-310 (334)
23 TIGR03340 phn_DUF6 phosphonate 99.3 1.6E-11 3.5E-16 98.5 12.0 135 15-158 140-280 (281)
24 KOG1582|consensus 99.3 3.1E-12 6.6E-17 100.4 6.6 151 13-163 184-334 (367)
25 COG0697 RhaT Permeases of the 99.3 5.7E-11 1.2E-15 94.4 12.8 148 4-162 135-288 (292)
26 PRK15430 putative chlorampheni 99.2 4.3E-10 9.4E-15 91.0 14.8 142 13-160 2-144 (296)
27 TIGR00688 rarD rarD protein. T 99.2 7.1E-10 1.5E-14 87.7 13.9 138 19-159 2-140 (256)
28 KOG1583|consensus 99.2 1.2E-10 2.7E-15 91.6 9.2 146 19-167 164-320 (330)
29 TIGR03340 phn_DUF6 phosphonate 99.1 1.7E-09 3.7E-14 86.8 12.8 133 21-161 3-135 (281)
30 TIGR00776 RhaT RhaT L-rhamnose 99.1 9.5E-10 2.1E-14 88.9 11.2 130 18-162 151-289 (290)
31 PLN00411 nodulin MtN21 family 99.0 4.3E-09 9.4E-14 87.4 12.5 137 20-161 14-156 (358)
32 TIGR00803 nst UDP-galactose tr 98.9 4.9E-09 1.1E-13 81.4 8.7 135 16-159 82-222 (222)
33 COG2962 RarD Predicted permeas 98.9 1E-07 2.2E-12 75.9 13.3 154 5-170 137-292 (293)
34 PTZ00343 triose or hexose phos 98.7 2.5E-07 5.3E-12 76.8 13.0 139 17-160 47-185 (350)
35 PF13536 EmrE: Multidrug resis 98.7 2E-07 4.4E-12 64.9 10.0 104 56-163 4-108 (113)
36 PRK11272 putative DMT superfam 98.7 4.7E-07 1E-11 73.1 13.5 130 21-161 10-141 (292)
37 PRK02971 4-amino-4-deoxy-L-ara 98.7 2.1E-07 4.6E-12 66.5 10.1 118 19-161 2-122 (129)
38 KOG2234|consensus 98.7 1.9E-07 4.2E-12 76.1 10.7 149 13-166 177-327 (345)
39 KOG2765|consensus 98.6 2.1E-07 4.5E-12 76.4 9.5 151 15-168 243-397 (416)
40 TIGR00817 tpt Tpt phosphate/ph 98.6 9.4E-07 2E-11 71.6 13.3 127 26-159 9-135 (302)
41 KOG4510|consensus 98.6 6.1E-08 1.3E-12 76.4 5.9 143 16-166 188-330 (346)
42 TIGR00950 2A78 Carboxylate/Ami 98.6 5.8E-07 1.3E-11 70.8 10.7 115 33-160 3-118 (260)
43 PRK11689 aromatic amino acid e 98.5 2.1E-06 4.6E-11 69.5 12.2 129 19-161 4-137 (295)
44 COG2962 RarD Predicted permeas 98.5 5.5E-06 1.2E-10 66.1 12.6 140 16-161 4-144 (293)
45 PRK11453 O-acetylserine/cystei 98.4 6.8E-06 1.5E-10 66.6 13.1 124 21-160 6-131 (299)
46 PF04142 Nuc_sug_transp: Nucle 98.4 4.1E-06 8.8E-11 66.2 10.9 130 17-151 112-243 (244)
47 PRK10452 multidrug efflux syst 98.3 1.8E-06 3.9E-11 60.8 5.1 67 98-164 38-106 (120)
48 TIGR00776 RhaT RhaT L-rhamnose 98.2 9.6E-06 2.1E-10 65.6 9.3 132 20-163 2-138 (290)
49 TIGR00688 rarD rarD protein. T 98.2 3.7E-05 8.1E-10 60.7 11.4 106 22-136 149-255 (256)
50 PF08449 UAA: UAA transporter 98.2 2.5E-05 5.4E-10 63.5 10.5 131 30-169 11-144 (303)
51 COG0697 RhaT Permeases of the 98.2 7.6E-05 1.6E-09 59.1 13.0 140 17-164 5-146 (292)
52 PRK15051 4-amino-4-deoxy-L-ara 98.1 1.7E-05 3.8E-10 55.2 7.0 63 98-160 45-108 (111)
53 PF06027 DUF914: Eukaryotic pr 98.1 5.2E-05 1.1E-09 62.5 10.4 138 20-165 18-155 (334)
54 PRK10650 multidrug efflux syst 98.0 9.1E-05 2E-09 51.3 9.5 53 108-160 54-107 (109)
55 PRK09541 emrE multidrug efflux 97.9 2.1E-05 4.5E-10 54.7 5.1 66 97-162 37-104 (110)
56 PRK10532 threonine and homoser 97.9 0.00063 1.4E-08 55.0 14.1 105 18-133 11-115 (293)
57 COG2076 EmrE Membrane transpor 97.8 5.8E-05 1.2E-09 51.8 6.0 64 99-162 39-104 (106)
58 PRK11431 multidrug efflux syst 97.8 8E-05 1.7E-09 51.3 5.9 64 98-161 37-102 (105)
59 KOG4510|consensus 97.8 7.1E-06 1.5E-10 64.9 0.6 130 19-159 38-167 (346)
60 PF04657 DUF606: Protein of un 97.7 0.0014 3.1E-08 47.3 11.5 130 21-157 3-137 (138)
61 PRK13499 rhamnose-proton sympo 97.6 0.0012 2.7E-08 54.6 11.6 139 18-163 6-155 (345)
62 KOG3912|consensus 97.6 0.00045 9.8E-09 55.2 7.9 147 15-162 172-335 (372)
63 PF04142 Nuc_sug_transp: Nucle 97.5 0.00011 2.4E-09 58.1 4.5 80 87-166 15-94 (244)
64 PF06800 Sugar_transport: Suga 97.5 0.0015 3.2E-08 52.3 10.5 127 18-157 137-267 (269)
65 PF06800 Sugar_transport: Suga 97.4 0.00081 1.7E-08 53.8 8.0 115 48-169 11-130 (269)
66 PF00893 Multi_Drug_Res: Small 97.1 0.0014 3.1E-08 44.0 5.2 55 98-152 37-93 (93)
67 COG4975 GlcU Putative glucose 97.1 0.00019 4E-09 56.3 0.7 138 19-169 2-144 (288)
68 KOG2766|consensus 97.0 0.00036 7.8E-09 55.1 2.1 134 18-162 165-300 (336)
69 KOG2234|consensus 96.9 0.035 7.5E-07 45.8 12.8 139 22-160 18-163 (345)
70 KOG4314|consensus 96.5 0.016 3.6E-07 44.3 7.3 144 13-162 129-277 (290)
71 COG3238 Uncharacterized protei 96.3 0.078 1.7E-06 38.8 9.6 137 18-160 4-145 (150)
72 PF05653 Mg_trans_NIPA: Magnes 96.1 0.0072 1.6E-07 49.3 3.9 117 17-160 5-121 (300)
73 PF06379 RhaT: L-rhamnose-prot 95.7 0.24 5.2E-06 40.9 11.1 144 18-166 6-158 (344)
74 PF07857 DUF1632: CEO family ( 95.5 0.011 2.5E-07 46.9 2.9 133 20-167 1-140 (254)
75 KOG1441|consensus 94.9 0.06 1.3E-06 44.2 5.3 124 27-156 25-150 (316)
76 KOG2765|consensus 92.6 0.08 1.7E-06 44.2 2.1 74 93-166 163-236 (416)
77 PF10639 UPF0546: Uncharacteri 92.4 0.31 6.8E-06 33.9 4.6 37 122-158 75-111 (113)
78 PRK13499 rhamnose-proton sympo 92.3 5.9 0.00013 33.0 13.3 140 18-161 173-341 (345)
79 KOG4314|consensus 90.2 0.18 3.9E-06 38.7 1.7 61 103-163 67-127 (290)
80 KOG3912|consensus 89.4 2.1 4.5E-05 34.8 7.2 64 95-158 92-155 (372)
81 PF05653 Mg_trans_NIPA: Magnes 88.9 0.65 1.4E-05 37.9 4.2 82 85-166 209-297 (300)
82 COG4975 GlcU Putative glucose 87.3 0.05 1.1E-06 43.0 -3.1 131 19-162 152-286 (288)
83 KOG1580|consensus 87.2 0.72 1.6E-05 36.5 3.3 57 108-164 104-160 (337)
84 KOG1581|consensus 86.4 8.2 0.00018 31.6 8.9 139 20-166 15-160 (327)
85 COG3169 Uncharacterized protei 83.7 5.9 0.00013 26.9 5.9 65 94-158 39-112 (116)
86 PF04342 DUF486: Protein of un 83.3 3.6 7.8E-05 28.2 4.8 30 128-157 75-104 (108)
87 KOG1444|consensus 80.1 32 0.00069 28.3 11.7 115 37-159 30-147 (314)
88 KOG2766|consensus 77.3 0.91 2E-05 36.3 0.5 135 18-162 17-151 (336)
89 KOG2922|consensus 73.2 0.69 1.5E-05 37.9 -1.2 120 15-161 17-136 (335)
90 COG5070 VRG4 Nucleotide-sugar 70.2 53 0.0011 26.1 9.8 114 43-166 32-145 (309)
91 PF11044 TMEMspv1-c74-12: Plec 70.1 6 0.00013 22.6 2.5 15 154-168 21-35 (49)
92 COG3086 RseC Positive regulato 70.0 9.8 0.00021 27.7 4.2 28 114-141 73-105 (150)
93 PF02694 UPF0060: Uncharacteri 69.0 23 0.00049 24.4 5.6 43 118-160 60-102 (107)
94 TIGR00905 2A0302 transporter, 65.2 89 0.0019 26.8 11.7 23 144-166 417-439 (473)
95 PF07444 Ycf66_N: Ycf66 protei 65.2 5.3 0.00012 26.3 1.9 26 139-164 3-28 (84)
96 PF15099 PIRT: Phosphoinositid 64.7 4.7 0.0001 28.5 1.7 21 138-158 74-94 (129)
97 KOG4812|consensus 62.4 26 0.00056 27.8 5.5 18 141-158 219-236 (262)
98 TIGR03141 cytochro_ccmD heme e 59.6 11 0.00024 21.5 2.4 27 150-176 16-42 (45)
99 PF04246 RseC_MucC: Positive r 58.1 9.8 0.00021 27.0 2.5 17 119-135 71-87 (135)
100 PF04971 Lysis_S: Lysis protei 58.0 16 0.00035 22.9 3.1 33 139-171 26-64 (68)
101 PRK02237 hypothetical protein; 57.4 10 0.00022 26.1 2.3 43 119-161 63-105 (109)
102 PF07168 Ureide_permease: Urei 56.1 10 0.00022 31.1 2.5 66 88-158 71-143 (336)
103 COG3374 Predicted membrane pro 55.3 92 0.002 23.8 8.1 74 93-169 80-157 (197)
104 KOG1442|consensus 54.2 12 0.00027 30.4 2.6 104 48-156 60-169 (347)
105 MTH00057 ND6 NADH dehydrogenas 51.7 38 0.00083 25.6 4.9 26 48-73 52-77 (186)
106 KOG2922|consensus 51.4 14 0.00031 30.4 2.6 82 85-166 223-311 (335)
107 PRK10862 SoxR reducing system 50.0 22 0.00047 26.0 3.2 12 159-170 118-129 (154)
108 cd01324 cbb3_Oxidase_CcoQ Cyto 49.4 9.7 0.00021 22.2 1.0 24 149-172 19-42 (48)
109 PRK11357 frlA putative fructos 48.6 1.7E+02 0.0036 24.8 9.6 21 147-167 419-439 (445)
110 PF14880 COX14: Cytochrome oxi 47.6 24 0.00052 21.4 2.6 24 140-163 15-38 (59)
111 COG0811 TolQ Biopolymer transp 47.6 1.2E+02 0.0025 23.4 7.1 62 93-167 130-192 (216)
112 PF04995 CcmD: Heme exporter p 47.4 18 0.00039 20.7 2.0 21 149-169 14-34 (46)
113 PF02699 YajC: Preprotein tran 45.1 27 0.00058 22.6 2.8 11 160-170 19-29 (82)
114 PF05545 FixQ: Cbb3-type cytoc 44.7 17 0.00036 21.0 1.6 19 150-168 19-37 (49)
115 PF10855 DUF2648: Protein of u 44.5 29 0.00062 18.4 2.2 23 149-171 6-28 (33)
116 KOG1619|consensus 43.0 49 0.0011 26.2 4.3 29 81-109 120-150 (245)
117 PF13994 PgaD: PgaD-like prote 43.0 39 0.00085 24.1 3.6 30 146-175 66-95 (138)
118 TIGR03810 arg_ornith_anti argi 42.8 2.2E+02 0.0047 24.4 8.9 22 144-165 412-433 (468)
119 TIGR02797 exbB tonB-system ene 42.5 1.5E+02 0.0033 22.7 7.2 62 93-169 130-194 (211)
120 TIGR00739 yajC preprotein tran 40.8 21 0.00045 23.3 1.7 6 152-157 11-16 (84)
121 PF03899 ATP_synt_I: ATP synth 39.8 35 0.00075 22.2 2.8 36 128-163 12-47 (100)
122 PRK10414 biopolymer transport 37.4 2.1E+02 0.0045 22.7 7.2 61 93-168 141-204 (244)
123 PF14981 FAM165: FAM165 family 36.5 39 0.00085 19.5 2.1 20 150-169 21-40 (51)
124 PRK00052 prolipoprotein diacyl 36.5 21 0.00046 28.5 1.5 22 141-162 237-258 (269)
125 CHL00196 psbY photosystem II p 35.9 57 0.0012 17.8 2.6 20 19-38 6-25 (36)
126 TIGR00544 lgt prolipoprotein d 35.2 21 0.00046 28.8 1.3 23 141-163 246-268 (278)
127 PRK10801 colicin uptake protei 34.3 2.2E+02 0.0048 22.2 6.8 63 93-168 135-198 (227)
128 PF12805 FUSC-like: FUSC-like 33.6 2.5E+02 0.0054 22.4 8.4 21 142-162 68-88 (284)
129 PF07578 LAB_N: Lipid A Biosyn 33.4 1.3E+02 0.0028 19.1 4.8 51 25-75 3-54 (72)
130 PF06966 DUF1295: Protein of u 33.3 55 0.0012 25.6 3.3 32 139-170 115-146 (235)
131 PLN02351 cytochromes b561 fami 33.1 2.5E+02 0.0054 22.3 9.7 29 144-172 201-230 (242)
132 PF02439 Adeno_E3_CR2: Adenovi 32.4 32 0.0007 19.0 1.3 21 146-166 13-33 (38)
133 PF06946 Phage_holin_5: Phage 32.4 1.6E+02 0.0034 19.8 6.2 24 145-168 64-87 (93)
134 TIGR00803 nst UDP-galactose tr 31.6 59 0.0013 24.7 3.2 45 121-165 10-54 (222)
135 PF14927 Neurensin: Neurensin 31.6 99 0.0022 22.4 4.1 24 135-158 89-112 (140)
136 PRK06638 NADH:ubiquinone oxido 31.4 2.3E+02 0.0051 21.5 9.4 50 20-73 31-80 (198)
137 COG5336 Uncharacterized protei 31.4 1.1E+02 0.0024 21.2 4.1 47 126-172 56-103 (116)
138 PF11377 DUF3180: Protein of u 31.2 1.8E+02 0.0039 20.8 5.4 36 141-176 27-62 (138)
139 PF15086 UPF0542: Uncharacteri 30.9 38 0.00083 21.5 1.7 17 151-167 34-50 (74)
140 COG4736 CcoQ Cbb3-type cytochr 30.8 38 0.00083 20.8 1.6 23 148-170 17-39 (60)
141 PF01350 Flavi_NS4A: Flaviviru 30.1 1.4E+02 0.0031 21.7 4.7 47 107-157 66-112 (144)
142 PRK05886 yajC preprotein trans 29.9 35 0.00076 23.6 1.5 14 152-165 12-25 (109)
143 PF06177 QueT: QueT transporte 29.5 2.3E+02 0.0049 20.7 6.4 40 2-41 48-87 (152)
144 COG1862 YajC Preprotein transl 29.1 45 0.00098 22.5 1.9 20 151-170 16-35 (97)
145 COG1971 Predicted membrane pro 27.6 57 0.0012 24.9 2.4 38 119-156 44-82 (190)
146 TIGR01167 LPXTG_anchor LPXTG-m 27.2 27 0.00059 18.1 0.5 14 141-154 10-23 (34)
147 PLN02810 carbon-monoxide oxyge 27.1 3.1E+02 0.0068 21.6 9.3 34 144-177 197-230 (231)
148 PF06298 PsbY: Photosystem II 27.1 98 0.0021 16.9 2.6 18 21-38 8-25 (36)
149 COG5006 rhtA Threonine/homoser 26.5 3.5E+02 0.0076 21.9 10.7 127 21-158 14-159 (292)
150 PF02537 CRCB: CrcB-like prote 25.9 2.2E+02 0.0047 19.3 8.4 77 25-108 6-82 (117)
151 PF01618 MotA_ExbB: MotA/TolQ/ 25.8 2.4E+02 0.0052 19.8 7.2 63 93-168 66-129 (139)
152 PRK00187 multidrug efflux prot 25.5 4.3E+02 0.0093 22.6 12.8 28 17-44 279-306 (464)
153 PRK13240 pbsY photosystem II p 25.2 1.1E+02 0.0023 17.2 2.6 19 20-38 7-25 (40)
154 PLN02776 prenyltransferase 25.2 4.1E+02 0.0088 22.2 14.0 37 107-144 116-152 (341)
155 PF15102 TMEM154: TMEM154 prot 25.2 16 0.00034 26.6 -0.9 18 150-167 70-87 (146)
156 PF00873 ACR_tran: AcrB/AcrD/A 25.1 2.2E+02 0.0048 27.3 6.4 65 92-156 333-398 (1021)
157 PF13038 DUF3899: Domain of un 24.7 72 0.0016 20.8 2.3 15 144-158 5-19 (92)
158 PF05399 EVI2A: Ectropic viral 24.6 1.8E+02 0.0039 22.7 4.6 40 127-175 132-171 (227)
159 COG2116 FocA Formate/nitrite f 24.4 1.6E+02 0.0035 23.7 4.5 24 49-72 110-133 (265)
160 PF01102 Glycophorin_A: Glycop 24.3 70 0.0015 22.5 2.2 13 157-169 84-96 (122)
161 KOG1583|consensus 24.1 41 0.00088 27.5 1.1 45 125-169 101-145 (330)
162 KOG1630|consensus 24.0 3.9E+02 0.0085 21.6 6.7 49 59-107 152-200 (336)
163 PF11118 DUF2627: Protein of u 23.9 60 0.0013 20.9 1.6 31 145-175 43-74 (77)
164 TIGR00751 menA 1,4-dihydroxy-2 23.9 3.9E+02 0.0084 21.5 9.4 35 3-37 12-46 (284)
165 PRK09575 vmrA multidrug efflux 23.6 4.6E+02 0.0099 22.3 11.2 28 17-44 278-305 (453)
166 PRK11562 nitrite transporter N 22.9 28 0.0006 28.0 -0.0 27 140-166 228-254 (268)
167 PRK13024 bifunctional preprote 22.7 1.3E+02 0.0028 28.0 4.2 42 115-156 290-331 (755)
168 PF14184 YrvL: Regulatory prot 22.1 3E+02 0.0065 19.6 8.5 54 114-167 73-126 (132)
169 PF11085 YqhR: Conserved membr 21.7 3.5E+02 0.0077 20.3 5.7 51 23-78 77-127 (173)
170 MTH00021 ND6 NADH dehydrogenas 21.7 3.6E+02 0.0077 20.3 6.6 50 19-72 21-70 (188)
171 PF11346 DUF3149: Protein of u 21.6 1E+02 0.0022 17.5 2.1 28 137-164 7-35 (42)
172 TIGR02796 tolQ TolQ protein. T 21.1 3.9E+02 0.0084 20.5 7.0 64 93-169 133-198 (215)
173 PRK14222 camphor resistance pr 20.8 3E+02 0.0066 19.1 7.4 52 48-108 33-84 (124)
174 PRK14195 camphor resistance pr 20.6 3.1E+02 0.0067 19.1 6.8 51 49-108 34-84 (125)
175 PF09622 DUF2391: Putative int 20.5 4.2E+02 0.009 21.4 6.2 36 115-150 212-249 (267)
176 PF08763 Ca_chan_IQ: Voltage g 20.3 1.4E+02 0.003 16.2 2.4 17 156-172 13-29 (35)
177 PRK14218 camphor resistance pr 20.0 3.3E+02 0.0072 19.3 7.6 52 48-108 39-90 (133)
No 1
>KOG1442|consensus
Probab=99.92 E-value=2e-25 Score=173.81 Aligned_cols=175 Identities=52% Similarity=0.820 Sum_probs=165.9
Q ss_pred CceeEeccccCCCccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcc
Q psy5010 1 MGFWLGVDQEDLAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDY 80 (178)
Q Consensus 1 ~~~~~gv~~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 80 (178)
.|+++||..|..+..++|.|.++++.++++.|+..+++||.....+..-+.+.+|+|..+.++.+|.....||...++.+
T Consensus 167 ~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~ 246 (347)
T KOG1442|consen 167 LGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGF 246 (347)
T ss_pred ehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCc
Confidence 48999999999999999999999999999999999999998877766789999999999999999999999999999998
Q ss_pred cccccchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 81 ADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 81 ~~~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
|+.+...+|..+.++|++||.++|.+.+.+|.+||+|.++-+..|.+.++++++.+++|.-+..-|-|-.+++.|..+|.
T Consensus 247 ~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 247 PHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 88778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhccC
Q psy5010 161 FVKQREMEAQYNNKY 175 (178)
Q Consensus 161 ~~k~~~~~~~~~~~~ 175 (178)
+.|++|++++..|+.
T Consensus 327 ~vk~~em~~~~~~~s 341 (347)
T KOG1442|consen 327 LVKEHEMRKASAQRS 341 (347)
T ss_pred HHHHHHHHhhccCCC
Confidence 999999998877654
No 2
>KOG1441|consensus
Probab=99.88 E-value=6.7e-23 Score=165.57 Aligned_cols=165 Identities=24% Similarity=0.274 Sum_probs=140.8
Q ss_pred eeEeccccCC-CccccHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCchhHHHHHHhHHHHHHHH-HHHHHcCChHHHh
Q psy5010 3 FWLGVDQEDL-AGSFSISGTVYGVIASASLALYSIHTKKVL--PCVNNEIWLLSYYNNVYSSIILL-FVSGLFGELKTVQ 78 (178)
Q Consensus 3 ~~~gv~~~~~-~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~--~~~~~~~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~ 78 (178)
+..||++++. |.++|+.|...++++.+..++++|+.|+.+ ++++.|++++++|+.+++..+++ |.....+.....
T Consensus 146 iv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~- 224 (316)
T KOG1441|consen 146 IVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFV- 224 (316)
T ss_pred eeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccccee-
Confidence 4689999999 999999999999999999999999999998 46789999999999999999999 876654321110
Q ss_pred cc-cccccchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 79 DY-ADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 79 ~~-~~~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
.+ ...++...+. ..+..+++++.|.+.|++++++||+|+++.|.+|.++.+..|+++|+|++|+.+.+|+++.+.|++
T Consensus 225 ~~~~~~~~~~~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~ 303 (316)
T KOG1441|consen 225 GFLTAPWFVTFLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVF 303 (316)
T ss_pred eeeccccchhhHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHH
Confidence 10 1123334444 344449999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHH
Q psy5010 158 AYTFVKQREMEA 169 (178)
Q Consensus 158 l~~~~k~~~~~~ 169 (178)
+|+..|.+++++
T Consensus 304 ~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 304 LYSRAKLKEKKG 315 (316)
T ss_pred HHHHHhhhhhcc
Confidence 999988877764
No 3
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.86 E-value=4.3e-21 Score=140.52 Aligned_cols=142 Identities=26% Similarity=0.309 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-----CCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhccc---c-cc--cchh
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPC-----VNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYA---D-LN--TAYF 88 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~-----~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~---~-~~--~~~~ 88 (178)
|.++++.|+++.|++.++.||..++ .+.++.++.+|+++.+.++++|..+..|+.+...... . .. .++.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7899999999999999999998877 5899999999999999999999999887655222111 1 01 3456
Q ss_pred hhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 89 WLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 89 ~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
+..++..|++++..+++.+++++++||++.++.+.+|.+..++.|+++|||++|+.+++|+++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7778899999999999999999999999999999999999999999999999999999999999999999875
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.86 E-value=1.9e-21 Score=157.44 Aligned_cols=163 Identities=16% Similarity=0.134 Sum_probs=123.4
Q ss_pred EeccccCC-CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHh-cccc
Q psy5010 5 LGVDQEDL-AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQ-DYAD 82 (178)
Q Consensus 5 ~gv~~~~~-~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~-~~~~ 82 (178)
.||+.... |.++++.|+++++++++++++|.++.||..++.+.|+.+++.|++..+.+.++|.....++.+... +...
T Consensus 130 ~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~ 209 (302)
T TIGR00817 130 GGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ 209 (302)
T ss_pred HHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 46666655 778889999999999999999999999987744568999999999999999999987665433111 0000
Q ss_pred ---cccc-hhhhHhhhhHHHHH-HHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 83 ---LNTA-YFWLFLPIGGLCGF-AIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 83 ---~~~~-~~~~~l~~~gv~~~-~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
.... ..+...+..+..++ ..+...+.+++++||++.++.+++||++++++|++++||++|+.+++|.++++.|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~ 289 (302)
T TIGR00817 210 AISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVF 289 (302)
T ss_pred hhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHH
Confidence 0111 12222333333222 233455578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHH
Q psy5010 158 AYTFVKQREM 167 (178)
Q Consensus 158 l~~~~k~~~~ 167 (178)
+|+..|.+|+
T Consensus 290 l~~~~k~~~~ 299 (302)
T TIGR00817 290 LYSRVKAQKP 299 (302)
T ss_pred HHHHHhccCc
Confidence 9987654333
No 5
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.83 E-value=7.9e-20 Score=151.07 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=128.7
Q ss_pred eEeccccCC-CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCchhHHHHHHhHHHHHHHHHHHHHcCCh--H
Q psy5010 4 WLGVDQEDL-AGSFSISGTVYGVIASASLALYSIHTKKVLPCV-----NNEIWLLSYYNNVYSSIILLFVSGLFGEL--K 75 (178)
Q Consensus 4 ~~gv~~~~~-~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~-----~~~~~~~~~~~~~~a~~~l~~~~~~~~~~--~ 75 (178)
+.||.+... |.++++.|++++++|++++|+|+++.||..++. +.++..+..+..+++.++++|+....+.. .
T Consensus 178 v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~ 257 (350)
T PTZ00343 178 VGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWV 257 (350)
T ss_pred HHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 467777777 889999999999999999999999999987654 24566677777999999999988755321 1
Q ss_pred HHh-cc----cccccchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhH
Q psy5010 76 TVQ-DY----ADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNW 150 (178)
Q Consensus 76 ~~~-~~----~~~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~ 150 (178)
..+ .. +.......+..++.+++..+..|.+.|.++++++|.+.++.+++||++++++|++++||++|+.+++|.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~ 337 (350)
T PTZ00343 258 PVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMA 337 (350)
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHH
Confidence 111 00 0000112333456678888888888889999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHh
Q psy5010 151 VVLFGSAAYTFVK 163 (178)
Q Consensus 151 lil~g~~l~~~~k 163 (178)
+++.|+++|+..|
T Consensus 338 lii~Gv~lYs~~k 350 (350)
T PTZ00343 338 VAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999764
No 6
>KOG1444|consensus
Probab=99.82 E-value=6.9e-20 Score=146.01 Aligned_cols=159 Identities=21% Similarity=0.325 Sum_probs=139.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHH-hcccccccchhhhH
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV-QDYADLNTAYFWLF 91 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (178)
|.++|..|+.|+..+.++.+.+..+.||..+..+.+.+.+++|+++.+.+.+.....++||++.+ .+++.......+..
T Consensus 151 d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~ 230 (314)
T KOG1444|consen 151 DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVV 230 (314)
T ss_pred cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHH
Confidence 99999999999999999999999999999888888999999999999999999999999998733 22333344667888
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHHhh
Q psy5010 92 LPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQY 171 (178)
Q Consensus 92 l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~~~ 171 (178)
+.++|+++++++|+.++|.+.+|+++++++|..+...+.+-+++++|+++++...+|+.+.+.|..+|++.+.+||++++
T Consensus 231 ~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 231 MLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 99999999999999999999999999999996566666666666677799999999999999999999999988877665
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.75 E-value=1.5e-17 Score=134.94 Aligned_cols=148 Identities=20% Similarity=0.296 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHH--cCChHHHhcccccccchhhhHhhhhH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGL--FGELKTVQDYADLNTAYFWLFLPIGG 96 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g 96 (178)
.|+++.+++.++.+.+.++.+|..++++.+++++++|+++++.+..++.... ++|..+..++.. ..++.+..++..+
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s 232 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFS 232 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHH
Confidence 3999999999999999999999999889999999999999999999988888 777665544422 2344666677778
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHH
Q psy5010 97 LCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 97 v~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~ 167 (178)
+.+.....+.+.++++.||++.+++..+++.+++++++++||+++++.+|+|.++++.|..+|++.|+|||
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 88877777778899999999999999999999999999999999999999999999999999999877654
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.74 E-value=2.6e-17 Score=132.95 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=114.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhh
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 94 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (178)
+.++.|++++++++++||.|.+..||..+++ ++... .+...++...+.|....+++ . ..++...|..+++
T Consensus 144 ~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~-~------~~~~~~~~~~~l~ 213 (293)
T PRK10532 144 HVDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAG-E------ALWHWSILPLGLA 213 (293)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccC-c------ccCCHHHHHHHHH
Confidence 4567899999999999999999999986654 55555 45666777777776655432 1 0123345656678
Q ss_pred hHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHH
Q psy5010 95 GGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 165 (178)
Q Consensus 95 ~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~ 165 (178)
.|++++.++|..+ +.+++.+|.+.++..+++|++++++|++++||++++.+++|.++++.|.+.+....++
T Consensus 214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999775 7899999999999999999999999999999999999999999999999988765444
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.74 E-value=5.3e-18 Score=129.21 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
-.|++|+..+++..+.|.+..||-.+-.+....+.++|+|+++.|++..+....+|+++- +..+-.+.+...++.++|+
T Consensus 154 N~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am~ISgl 232 (309)
T COG5070 154 NPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAMFISGL 232 (309)
T ss_pred CCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHHHHHHH
Confidence 369999999999999999999997766666789999999999999999999999887642 1112245566778899999
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 98 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
++....|+.-||++.+|.++++++|++++....+.|.++||||.+...+..+.+-..+...|..+|.+|++
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998766443
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=128.72 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=111.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhh
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCVN-NEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLP 93 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (178)
+.++.|++++++++++|+.|.++.||..++.+ .+......++...+.+.+.+.....++..+........+...|..++
T Consensus 139 ~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (299)
T PRK11453 139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLM 218 (299)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHH
Confidence 44568999999999999999999999765432 12233344554444443333333322211110000123456788899
Q ss_pred hhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhH
Q psy5010 94 IGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 164 (178)
Q Consensus 94 ~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~ 164 (178)
+.|+++++++|..+ +.+++.+|.+.+++..++|++++++|++++||++++.+++|.++++.|+++..+.++
T Consensus 219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999887 679999999999999999999999999999999999999999999999987666554
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.69 E-value=8.4e-16 Score=127.34 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
..|+.+++.++++||+|.+..||..++++ ++...+.++..++...+.+.....++.+ ...+...++...+ .+++.++
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~-~i~y~~i 264 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNN-PSVWIIHFDITLI-TIVTMAI 264 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCC-cccceeccchHHH-HHHHHHH
Confidence 45999999999999999999999877663 3345566666655555544444432211 1110011222222 3556666
Q ss_pred HHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHHhhh
Q psy5010 98 CGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQYN 172 (178)
Q Consensus 98 ~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~~~~ 172 (178)
. ..++|..+ +++++.||.++++..+++|++++++|++++||++++.+++|.++++.|+++.++.|++|.+++.+
T Consensus 265 ~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~ 339 (358)
T PLN00411 265 I-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLL 339 (358)
T ss_pred H-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 5 45666655 69999999999999999999999999999999999999999999999999988777666554433
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.68 E-value=7.1e-16 Score=124.49 Aligned_cols=141 Identities=20% Similarity=0.120 Sum_probs=115.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhh
Q psy5010 14 GSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLP 93 (178)
Q Consensus 14 ~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (178)
.+.+..|++++++++++||.|.+..||..++ ++.....++...+.+.+.+.....++... ...+...|..++
T Consensus 145 ~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~ 216 (292)
T PRK11272 145 LSGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT-----ALPTLSGFLALG 216 (292)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHH
Confidence 3556789999999999999999999996542 34556678888888888777665543211 112345677888
Q ss_pred hhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 94 IGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 94 ~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
+.+++++.+.+..+ +++++.++.+.++..++||+.+.++|++++||++|+.+++|.++++.|+++.+..
T Consensus 217 ~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 217 YLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888776 6899999999999999999999999999999999999999999999999876653
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.66 E-value=3e-15 Score=121.05 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhH
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 96 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 96 (178)
++.|++++++++++||.|.++.||..++. ++.... . ..+...+.+.....++.. ...+.+.|..+++.+
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~--~-~~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~~~~ 222 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLF--F-ILTALALWIKYFLSPQPA------MVFSLPAIIKLLLAA 222 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHH--H-HHHHHHHHHHHHHhcCcc------ccCCHHHHHHHHHHH
Confidence 46799999999999999999999986554 555432 2 223333333333333211 113445676667767
Q ss_pred HHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 97 LCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 97 v~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
+ ++.+.|..+ +.+++.+|.+.++..+++|++++++|++++||++++.+++|.++++.|+.+....
T Consensus 223 ~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 223 A-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred H-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 4 567777665 7899999999999999999999999999999999999999999999999766543
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.65 E-value=3.2e-15 Score=118.12 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=113.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHh
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFL 92 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (178)
+.+.+..|++++++++++++.+.+..||..++.+.++.....+.+..+.+++.|.....++.+ ..+...|..+
T Consensus 122 ~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~ 194 (260)
T TIGR00950 122 NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-------QALSLQWGAL 194 (260)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CcchHHHHHH
Confidence 456678899999999999999999999987766444555655778888888888877654322 1234466667
Q ss_pred hhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhh
Q psy5010 93 PIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGS 156 (178)
Q Consensus 93 ~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~ 156 (178)
++.++++..+++..+ +++++.++.+.+...+++|+++++++++++||++++.+++|.++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 888988888887766 6899999999999999999999999999999999999999999999886
No 15
>KOG1581|consensus
Probab=99.55 E-value=4.5e-14 Score=112.01 Aligned_cols=150 Identities=12% Similarity=0.042 Sum_probs=131.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhh
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 94 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (178)
..++.|+.+...+-+..++-+-.++++.+.+++++++++++.|+++++......+.+|.+.+..++-.. .++.+.=++.
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~-hp~~~~Di~l 246 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE-HPDVAFDILL 246 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc-ChhHHHHHHH
Confidence 356899999999999999999999999999999999999999999999988887777765554444222 3556666777
Q ss_pred hHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHH
Q psy5010 95 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 165 (178)
Q Consensus 95 ~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~ 165 (178)
.+.++.+.+.+.|..+++.||++.+++...++++++.++.+.||++++..||+|..++++|.++..+-|.+
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 78889888898899999999999999999999999999999999999999999999999999988876666
No 16
>KOG1580|consensus
Probab=99.49 E-value=6.9e-14 Score=107.69 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=133.7
Q ss_pred eEeccccCC-Cccc-------cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChH
Q psy5010 4 WLGVDQEDL-AGSF-------SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELK 75 (178)
Q Consensus 4 ~~gv~~~~~-~~~~-------~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 75 (178)
++||+..-+ |... --.|-++.++|.-...+....+.|..+++..+.-+|++|.|+.+.+.+-.-.+++||..
T Consensus 149 V~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElw 228 (337)
T KOG1580|consen 149 VVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELW 228 (337)
T ss_pred HHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHH
Confidence 456665555 3332 34799999999999999999999988777778889999999999999988888999987
Q ss_pred HHhcccccccchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhh
Q psy5010 76 TVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFG 155 (178)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g 155 (178)
++..+.+.+ +..|.-+...++.+...+.+.|..+...||++.|++...++.++++.|+++|+++++..||+|..+++.+
T Consensus 229 eF~yF~~Rh-P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~a 307 (337)
T KOG1580|consen 229 EFFYFVQRH-PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSA 307 (337)
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Confidence 776554443 3455567888999988889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhH
Q psy5010 156 SAAYTFVKQ 164 (178)
Q Consensus 156 ~~l~~~~k~ 164 (178)
...=....+
T Consensus 308 L~~D~~~GK 316 (337)
T KOG1580|consen 308 LTADVVDGK 316 (337)
T ss_pred hhhHhhcCC
Confidence 876444433
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.45 E-value=2.7e-12 Score=103.85 Aligned_cols=141 Identities=12% Similarity=0.042 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHH
Q psy5010 22 VYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFA 101 (178)
Q Consensus 22 ~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 101 (178)
.++++++++||.|.+..||..++...+......+..+.+.+...+.. ..... .. ...+...+..+...|+ .+.
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~---~~~~~~~~~~~~~~g~-~t~ 224 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTS-HM---GQNPMSLNLLLIAAGI-VTT 224 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcc-cc---cCCcHHHHHHHHHHHH-HHH
Confidence 46888999999999999996543212233334444444444332221 11110 00 0011122333444454 344
Q ss_pred HHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHH
Q psy5010 102 IGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 102 ~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~ 169 (178)
+.+..+ ..+++.+|.+++...+++|+++.++|++++||++++.+++|+++++.|+.+...+.....|+
T Consensus 225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~~ 293 (296)
T PRK15430 225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRR 293 (296)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555554 78999999999999999999999999999999999999999999999987776655444333
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.43 E-value=6.2e-13 Score=93.15 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHH-H
Q psy5010 29 ASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVT-T 107 (178)
Q Consensus 29 ~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~ 107 (178)
++|+.+.+..|+..++. ||.....+....+.+ +++.....+..+ . ...+.+.+......|+++...++.. +
T Consensus 1 ~~~a~~~~~~k~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI--SPLSITFWRFLIAGI-LLILLLILGRKP-F----KNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred ceeeeHHHHHHHHhccC--CHHHHHHHHHHHHHH-HHHHHHhhcccc-c----cCCChhhhhhhhHhhccceehHHHHHH
Confidence 46889999999988864 899999999999988 666666554322 1 1234556666777777765666554 4
Q ss_pred HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 108 LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 108 ~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
..+++.++...++..+++|+++.++++++++|++++.+++|+.+++.|+++.+
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999997654
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.42 E-value=2.6e-12 Score=90.05 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHH
Q psy5010 21 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 100 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 100 (178)
.+|++++++.+++-.++.|--+++. ||...+...+.....++......+|++... ...+++.|..+.++|+.+-
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v--dp~~At~IRtiVi~~~l~~v~~~~g~~~~~----~~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV--DPDFATTIRTIVILIFLLIVLLVTGNWQAG----GEIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--CccHHHHHHHHHHHHHHHHHHHhcCceecc----cccCcceehhhhHHHHHHH
Confidence 5799999999999999999988865 788888888888888888888888765421 2246778988999996665
Q ss_pred HHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 101 AIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
.-.++.|.+++.-.+..+..+.-..+++++++|+++++|++|..+|+|..++..|..+.+
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 555676789999888899999999999999999999999999999999999999987644
No 20
>KOG1443|consensus
Probab=99.41 E-value=1.2e-12 Score=104.06 Aligned_cols=155 Identities=23% Similarity=0.228 Sum_probs=128.3
Q ss_pred EeccccCC-CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---CchhHHHHHHhHHHHHHHHHHHHHcCChHHH---
Q psy5010 5 LGVDQEDL-AGSFSISGTVYGVIASASLALYSIHTKKVLPCVN---NEIWLLSYYNNVYSSIILLFVSGLFGELKTV--- 77 (178)
Q Consensus 5 ~gv~~~~~-~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~---~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~--- 77 (178)
.||++.++ +.|+|..|.+++..++++.+++..++++.+++.+ .+|.+++++..+.....++|..+..+.....
T Consensus 149 ~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s 228 (349)
T KOG1443|consen 149 VGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSS 228 (349)
T ss_pred hheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhh
Confidence 46777777 7799999999999999999999999998876543 6899999999999888898988766543322
Q ss_pred --hcccccc-cchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhh
Q psy5010 78 --QDYADLN-TAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLF 154 (178)
Q Consensus 78 --~~~~~~~-~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~ 154 (178)
++..+.. .......+...|..+|.+.++.|..+.+++..+.++.|..|.+.+.++|..+.+|+++..+|.|..+++.
T Consensus 229 ~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~a 308 (349)
T KOG1443|consen 229 SIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLA 308 (349)
T ss_pred hHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 1111100 1123345677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH
Q psy5010 155 GSAAY 159 (178)
Q Consensus 155 g~~l~ 159 (178)
|..+|
T Consensus 309 gi~~~ 313 (349)
T KOG1443|consen 309 GILLH 313 (349)
T ss_pred HHHHh
Confidence 99887
No 21
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.39 E-value=2.3e-12 Score=100.08 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=119.7
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHh
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFL 92 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (178)
..+.|+.|..+++.+..||++|.+..||.-+.. +...-+.+.+.++.++.+|+...+.+.. + +++.....-
T Consensus 142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pig~~~ag~~-l------~~p~ll~la 212 (292)
T COG5006 142 VWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPIGAAQAGPA-L------FSPSLLPLA 212 (292)
T ss_pred cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhhhhhhcchh-h------cChHHHHHH
Confidence 357899999999999999999999999987533 5667778888999999999877554321 2 345566666
Q ss_pred hhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhH
Q psy5010 93 PIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 164 (178)
Q Consensus 93 ~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~ 164 (178)
+..++++.++-|+.= ..+++.++-++++.-.+||.++.+.|++++||.+|+.||.|++.++.++.--+..-+
T Consensus 213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 788999999999875 479999999999999999999999999999999999999999999999876555433
No 22
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.38 E-value=5.6e-12 Score=103.27 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhH
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 96 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 96 (178)
...|+++++.++++||+++++.++..++. +..+......+++.++..+..... |..++... .|+.+.+..++. .
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~--~w~~~~~~~~v~-~ 239 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAIL-ERSGIESI--HWTSQVIGLLVG-Y 239 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhcc--CCChhhHHHHHH-H
Confidence 46899999999999999999999998875 677888888888888887776655 44444332 244444433222 2
Q ss_pred HHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 97 LCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 97 v~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
.++....|+.. ..++..||+..++---.-+..+.++++++||+++++..++|.++++.|.++|+...+++
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 22333334433 46889999988887777889999999999999999999999999999999998865443
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.34 E-value=1.6e-11 Score=98.53 Aligned_cols=135 Identities=12% Similarity=-0.024 Sum_probs=93.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchh-HHHHHHhHHHHHHH-HHHHH---HcCChHHHhcccccccchhh
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIW-LLSYYNNVYSSIIL-LFVSG---LFGELKTVQDYADLNTAYFW 89 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~-~~~~~~~~~a~~~l-~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (178)
+.+..|+.++++++++++.|.+..||..++. ++. ....+. ..+.... .|... ..++.. . . .+...+
T Consensus 140 ~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~ 210 (281)
T TIGR03340 140 QHRRKAYAWALAAALGTAIYSLSDKAAALGV--PAFYSALGYL-GIGFLAMGWPFLLLYLKRHGRS-M----F-PYARQI 210 (281)
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccch--hcccccHHHH-HHHHHHHHHHHHHHHHHHhccc-h----h-hhHHHH
Confidence 4567799999999999999999988864433 222 222221 1121111 22222 112111 0 0 111233
Q ss_pred hHhhhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhH
Q psy5010 90 LFLPIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 90 ~~l~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l 158 (178)
..+.+.+.++..++|..+ ..+++.++.+.+...+++|++++++|++++||+++..+++|+++++.|+.+
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 345666767777777665 789999999999999999999999999999999999999999999999864
No 24
>KOG1582|consensus
Probab=99.32 E-value=3.1e-12 Score=100.42 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=130.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHh
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFL 92 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (178)
..+||..|+...-.+.++.|.-.-++.|..+.++-++.++.+|...++.++++.....++|..+.+.+....+.+.++..
T Consensus 184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHH
Confidence 45677899999999999999999999999988888899999999999999999999999998877766544455567666
Q ss_pred hhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHh
Q psy5010 93 PIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 93 ~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k 163 (178)
++-+..++...-+....++..|+.+++.+...++.+++++|+++|..|+|.+..-|..+++.|.++-.+.|
T Consensus 264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 66666666555555568999999999999999999999999999999999999999999999999866665
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.30 E-value=5.7e-11 Score=94.38 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=108.1
Q ss_pred eEeccccCC-Cccc---cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHH-HHhHHHHHHHHHHHHHcCChHHHh
Q psy5010 4 WLGVDQEDL-AGSF---SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSY-YNNVYSSIILLFVSGLFGELKTVQ 78 (178)
Q Consensus 4 ~~gv~~~~~-~~~~---~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~-~~~~~a~~~l~~~~~~~~~~~~~~ 78 (178)
+.|+.+... +... +..|+.+++.++++++++.+..|+.. +. ++..... +..........+... .+.+
T Consensus 135 ~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~--- 206 (292)
T COG0697 135 LAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQLLLALLLLLLFFL--SGFG--- 206 (292)
T ss_pred HHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHHHHHHHHHHHHHh--cccc---
Confidence 356666665 3332 36899999999999999999999976 33 4555555 343312222222211 1111
Q ss_pred cccccccchhhhHhhhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 79 DYADLNTAYFWLFLPIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 79 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
...+...|..+...|+++..+.+..+ ..+++.++...+.....+|+.+.+++++++||+++..+++|..+++.|+.
T Consensus 207 ---~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~ 283 (292)
T COG0697 207 ---APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVL 283 (292)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 01234567677888888887666664 78999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy5010 158 AYTFV 162 (178)
Q Consensus 158 l~~~~ 162 (178)
+....
T Consensus 284 l~~~~ 288 (292)
T COG0697 284 LASLR 288 (292)
T ss_pred HHhcc
Confidence 77654
No 26
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.23 E-value=4.3e-10 Score=91.00 Aligned_cols=142 Identities=8% Similarity=0.027 Sum_probs=107.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHh
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFL 92 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (178)
|.+-...|+++.++++++|+...+..|.. .+ .+|.++.++...++.+++.+.....++...... ...+...+...
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~--~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 76 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-YY--VPADEILTHRVIWSFFFMVVLMSICRQWSYLKT--LIQTPQKIFML 76 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH--HHcCHHHHHHH
Confidence 34445689999999999999999999764 43 589999999999999888777655544322110 00122333222
Q ss_pred hhhHHHHHHHH-HHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 93 PIGGLCGFAIG-YVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 93 ~~~gv~~~~~~-~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
. .+.++...+ .+.++.++.+++...++..+..|++.+++++++++|+++..+++|+++.+.|+.+..
T Consensus 77 ~-~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 77 A-VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred H-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3 444444444 444588999999999999999999999999999999999999999999999987654
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.19 E-value=7.1e-10 Score=87.75 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHH-hcccccccchhhhHhhhhHH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV-QDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gv 97 (178)
.|.++.++++++|+...+..|. ..+ .+|.++.++...++.+++++.....++.... .+.......+.+..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~--~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP--LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc--CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999998 444 5899999999999998887766554432211 01000011222334556666
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHH
Q psy5010 98 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 159 (178)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~ 159 (178)
+...-..+.++.++.+++.+.+++.+..|++++++++++++|+++..+++|..+.+.|+.+.
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 64444455568899999999999999999999999999999999999999999999998754
No 28
>KOG1583|consensus
Probab=99.19 E-value=1.2e-10 Score=91.58 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcc----c-----cc--ccch
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDY----A-----DL--NTAY 87 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~----~-----~~--~~~~ 87 (178)
.|+.+...+.+..|.-.++++...++++.++-|.++|+...+.|..+.. .+|..+.+.. + .. .-|.
T Consensus 164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~---~~div~~~~~~~~se~~~~p~~g~~vP~ 240 (330)
T KOG1583|consen 164 IGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFM---GDDIVSHWRLAFKSESYLIPLLGFKVPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHh---cchHHHHHHHHhcCcceeccccCccccH
Confidence 5888889999999999999999999889899999999999998876543 2343333321 1 00 0133
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHH
Q psy5010 88 FWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 88 ~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~ 167 (178)
.|..++...+.-.+=--..+.+-.+++++|++++-.+++.++.++|+..|++++|+..|+|.++++.|.++|+-...+.|
T Consensus 241 ~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 241 MWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45444443332221111112344678999999999999999999999999999999999999999999999988766555
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.11 E-value=1.7e-09 Score=86.80 Aligned_cols=133 Identities=12% Similarity=0.059 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHH
Q psy5010 21 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 100 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 100 (178)
.++.+++++++|.+.+..||..++. ++. ..+....+.+.+.|......... .+. ..+.+.|..+...++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWYLAQV-GWS---RLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHhcccC-CCC---CcchhhHHHHHHHHHHHH
Confidence 4688999999999999999876653 333 45566667777777665431111 010 012234444555555555
Q ss_pred HHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 101 AIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
...++.+...+..++...+++.+..|+++.++|++++||+++..+|+|+.+++.|+.+...
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5556666789999999999999999999999999999999999999999999999976543
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.11 E-value=9.5e-10 Score=88.90 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHH---hHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhh
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYN---NVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 94 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (178)
..|++++++++++|+.|.+..|+. ++ +|.+..+.+ .+++..++.+.. .++ ++. .+...|.. ..
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~--~~~-~~~------~~~~~~~~-~~ 216 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GV--DGLSVLLPQAIGMVIGGIIFNLGH--ILA-KPL------KKYAILLN-IL 216 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CC--CcceehhHHHHHHHHHHHHHHHHH--hcc-cch------HHHHHHHH-HH
Confidence 789999999999999999999985 23 677774333 333333333221 111 100 12223433 34
Q ss_pred hHHHHHHHHHHHH-HHhh-ccCchhhhhhhchhHHHHHHHHHHhcCCcccccch----hhhHHhhhhhhHHHHH
Q psy5010 95 GGLCGFAIGYVTT-LQIK-ITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWW----VSNWVVLFGSAAYTFV 162 (178)
Q Consensus 95 ~gv~~~~~~~~~~-~~i~-~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~----iG~~lil~g~~l~~~~ 162 (178)
.|++ +.+++..| ...+ +.++.+.++....||+.++++|++++||+.++.++ +|.++++.|+.+-...
T Consensus 217 ~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 217 PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 8888 67777666 6677 99999999999999999999999999999999999 9999999999876543
No 31
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.04 E-value=4.3e-09 Score=87.43 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHH
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 99 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 99 (178)
=+..+++.-++|+.+.++.|...++ +++|....+|...++.++++|+....++.... ...+.+.|..+...|+++
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~----~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL----PPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhccc----CcchHHHHHHHHHHHHHH
Confidence 4567788899999999999998865 78999999999999999999887654221100 011234556677788887
Q ss_pred HHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHh------cCCcccccchhhhHHhhhhhhHHHH
Q psy5010 100 FAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYW------YNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~------f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
+..+...+..++.++|...+++.+..|+++.++++++ ++|+++..+++|+++.+.|+.+...
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4333355678999999999999999999999999999 6999999999999999999987554
No 32
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.94 E-value=4.9e-09 Score=81.41 Aligned_cols=135 Identities=10% Similarity=0.103 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcC----ChHHHhccc--ccccchhh
Q psy5010 16 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFG----ELKTVQDYA--DLNTAYFW 89 (178)
Q Consensus 16 ~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~----~~~~~~~~~--~~~~~~~~ 89 (178)
..+.|....+.++++.++-.++.+|..++++.+ +|.+.++.++..+.....+ +.......+ ..++...|
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 346788888888888889999999976654322 4444444444433321111 111111111 11233333
Q ss_pred hHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHH
Q psy5010 90 LFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 159 (178)
Q Consensus 90 ~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~ 159 (178)
... +.......+..+++|+.++++.+++...++++++++|+++|||+++..+++|..+++.|+++|
T Consensus 157 ~~~----~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVG----LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHH----HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 322 223333355668899999999999999999999999999999999999999999999998765
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.85 E-value=1e-07 Score=75.89 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=107.1
Q ss_pred EeccccCC-CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhccccc
Q psy5010 5 LGVDQEDL-AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADL 83 (178)
Q Consensus 5 ~gv~~~~~-~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 83 (178)
.||+..+. -.+++|.... =+++|+.|...-|+. + .++.+-..--.+.-.+..+.+....++-.+.. +.
T Consensus 137 ~GV~~~~~~~g~lpwval~----la~sf~~Ygl~RK~~-~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~---~~ 205 (293)
T COG2962 137 AGVLIQTWLLGSLPWVALA----LALSFGLYGLLRKKL-K---VDALTGLTLETLLLLPVALIYLLFLADSGQFL---QQ 205 (293)
T ss_pred HHHHHHHHHcCCCcHHHHH----HHHHHHHHHHHHHhc-C---CchHHhHHHHHHHHhHHHHHHHHHHhcCchhh---hc
Confidence 46666666 6677776554 367899999886664 3 24444444444444444444444443333211 11
Q ss_pred ccchhhhHhhhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 84 NTAYFWLFLPIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 84 ~~~~~~~~l~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
.+...+..+...|... .+....| ..-|+.+=.+.+..++.+|....++|++++||+++..+.+.-+.+-.|..+|+.+
T Consensus 206 ~~~~~~~LLv~aG~vT-avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 206 NANSLWLLLVLAGLVT-AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred CCchHHHHHHHhhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666544 4555555 5688899999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHh
Q psy5010 163 KQREMEAQ 170 (178)
Q Consensus 163 k~~~~~~~ 170 (178)
..+++|++
T Consensus 285 ~l~~~r~~ 292 (293)
T COG2962 285 GLYTARKK 292 (293)
T ss_pred HHHHHhhc
Confidence 87766554
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.74 E-value=2.5e-07 Score=76.77 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhH
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 96 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 96 (178)
++.-..+.+.--.+...+++..|+.+++.+ -|+.+...+..++.+++.++.... ..+..+.+ .....|..++..|
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~-~P~~l~~~~~~~~~l~~~~~~~~~--~~~~~~~~--~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLP-LPWTISSLQLFVGWLFALLYWATG--FRKIPRIK--SLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCC--CHHHHHHHHHHHH
Confidence 555556666666677788888898888763 299999999999987765554321 11000000 0123556677888
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 97 LCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 97 v~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
+++....+..+.+++.+++..++++...+|+++.++++++++|+++..++.|+.+++.|+.+-.
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 8888776666788999999999999999999999999999999999999999999999997644
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.72 E-value=2e-07 Score=64.94 Aligned_cols=104 Identities=16% Similarity=0.323 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHH
Q psy5010 56 NNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIAS 134 (178)
Q Consensus 56 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~ 134 (178)
....+.+.+.......++..+.... ...+.+.+++..|+++...++..+ +..+..++ .++....+.|+++.++|+
T Consensus 4 r~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 4 RYLFSVLFLLIILLIRGRLRDLFRA---LRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHH---HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 4456677777766666665544321 112334455666777765566555 67888875 777888999999999999
Q ss_pred HhcCCcccccchhhhHHhhhhhhHHHHHh
Q psy5010 135 YWYNEVKPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 135 ~~f~e~~t~~~~iG~~lil~g~~l~~~~k 163 (178)
++|+|+++..+++|..+++.|+.+..+.+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998877654
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.71 E-value=4.7e-07 Score=73.10 Aligned_cols=130 Identities=13% Similarity=0.015 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHH
Q psy5010 21 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 100 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 100 (178)
.+..++-.+.|+...+..|...++ .+|.+...+...++.+++++.....+... .+.+.|......|++..
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~--~~p~~~~~~R~~~a~l~ll~~~~~~~~~~--------~~~~~~~~~~~~g~~~~ 79 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES--WPPLMMAGVRFLIAGILLLAFLLLRGHPL--------PTLRQWLNAALIGLLLL 79 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CcHHHHHHHHHHHHHHH
Confidence 345677888999999999987664 58999999999999999888766543211 12334555566676665
Q ss_pred HHHH-HHHHHh-hccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 101 AIGY-VTTLQI-KITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 101 ~~~~-~~~~~i-~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
...+ +.++.. +.+++...++..++.|+++.+++.+ ++|+++..+++|..+.+.|+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 4433 334566 7788888899999999999999985 7999999999999999999876543
No 37
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.71 E-value=2.1e-07 Score=66.52 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 98 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 98 (178)
.|+++.+.+.++.+.-+++.|+-.++.+.. +.... . . ..+. .. .++. ..++.|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~--~~~~~-~-~--~~~~---~~-------------~~p~---~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLL--SHAWD-F-I--AALL---AF-------------GLAL---RAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCc--cchhH-H-H--HHHH---HH-------------hccH---HHHHHHHH
Confidence 488999999999999999999977665321 11100 0 0 0000 00 0111 13567778
Q ss_pred HHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHH--hcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 99 GFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASY--WYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 99 ~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~--~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
+.++++..+ ..+++.++.....+-...++...+.++. +|||++|+.+++|+++++.|+++.+.
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 888888776 5788888877777667777777777775 89999999999999999999988664
No 38
>KOG2234|consensus
Probab=98.70 E-value=1.9e-07 Score=76.08 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=112.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHH--hcccccccchhhh
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTV--QDYADLNTAYFWL 90 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (178)
+.+-.+.|....+.+++..++..++.+|.+|+-+.+.+..+.....++.++.+.....+ |.+.. ..+-+.++...|.
T Consensus 177 ~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~ 255 (345)
T KOG2234|consen 177 SAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWL 255 (345)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHH
Confidence 45566899999999999999999999999988777778777777778888777766655 33333 1223456777887
Q ss_pred HhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 91 FLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 91 ~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
.++..++.|..++... |+.+...=.....+-.+++++.++.+||-++|....+|..+++.+..+|+..++++
T Consensus 256 vVl~~a~gGLlvs~v~----KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 256 VVLLNAVGGLLVSLVM----KYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHhccchhHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 7777787777666543 33333333333445568899999999999999999999999999999999666655
No 39
>KOG2765|consensus
Probab=98.65 E-value=2.1e-07 Score=76.36 Aligned_cols=151 Identities=11% Similarity=0.142 Sum_probs=109.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCchhHHHHHHhHHHHHHHHHHHHHcCCh-HHHhcccccccchhhhH
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCV--NNEIWLLSYYNNVYSSIILLFVSGLFGEL-KTVQDYADLNTAYFWLF 91 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~--~~~~~~~~~~~~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (178)
+-+..|.++++++++.||+|.++.||...++ ++|--...-|..++..+++.|...+.+-. .+-++ .++......
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~---lP~~~q~~~ 319 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE---LPSSTQFSL 319 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc---CCCCceeEe
Confidence 3447899999999999999999999987665 34433334445556666666544432110 00111 123334445
Q ss_pred hhhhHHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 92 LPIGGLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 92 l~~~gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
+++.+.+++++.=..| ++.-.++|+...+--.+.-.++++..+++-+.++|+..++|.+.++.|.+..++..+...+
T Consensus 320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~ 397 (416)
T KOG2765|consen 320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKK 397 (416)
T ss_pred eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccccc
Confidence 7788888888884444 6778899999888888888899999999999999999999999999999988887655444
No 40
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.64 E-value=9.4e-07 Score=71.58 Aligned_cols=127 Identities=12% Similarity=0.056 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHH
Q psy5010 26 IASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYV 105 (178)
Q Consensus 26 ~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~ 105 (178)
+--++...++++-|+..++.+ .|..+...+...+.+.+.+... .+..+ . ...+.+.|..++..|++.......
T Consensus 9 ~w~~~~~~~~~~NK~~l~~~~-~P~~~~~~~~~~~~~~~~~~~~-~~~~~-~----~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNVFP-YPYFKTLISLAVGSLYCLLSWS-SGLPK-R----LKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHHHHHH-hCCCC-C----CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666677777643 6899999988888776655421 11111 0 112345666677778776444445
Q ss_pred HHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHH
Q psy5010 106 TTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 159 (178)
Q Consensus 106 ~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~ 159 (178)
...+++.+++...+++....|+++.++++++++|+++..++.|..+++.|+.+.
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 557899999999999999999999999999999999999999999999998653
No 41
>KOG4510|consensus
Probab=98.64 E-value=6.1e-08 Score=76.35 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhh
Q psy5010 16 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIG 95 (178)
Q Consensus 16 ~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (178)
-|..|.+.++.+++.-|.-.|+.|+..|+. +..-...|..+++.+..+..+..-+++ ..| ++...|+.++..
T Consensus 188 ~~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP--~cgkdr~l~~~l 259 (346)
T KOG4510|consen 188 YDIPGTVAAISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCASIGAV----QLP--HCGKDRWLFVNL 259 (346)
T ss_pred ccCCchHHHHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhhccce----ecC--ccccceEEEEEe
Confidence 456788888888888888888899987765 444445566666666665555444432 222 345567778889
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 96 GLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 96 gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
|++|+..+....+.+++=-+-..++..+..-+++.++-+++|||.+|+.+|.|+++++.+..+....|.-+
T Consensus 260 GvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 260 GVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred hhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 99999999887776555444456777888999999999999999999999999999999988766655443
No 42
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.60 E-value=5.8e-07 Score=70.84 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=89.0
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHH-HHHhh
Q psy5010 33 LYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVT-TLQIK 111 (178)
Q Consensus 33 ~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~i~ 111 (178)
...+..|...++ ..++....++....+.+++.+..... . +...+......|.++..+.+.. +..++
T Consensus 3 ~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~---~---------~~~~~~~~~~~~~~~~~l~~~~~~~a~~ 69 (260)
T TIGR00950 3 TTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR---P---------PLKRLLRLLLLGALQIGVFYVLYFVAVK 69 (260)
T ss_pred chHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc---c---------CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666776555 35899999999998888887764432 1 1223444556666666666544 47899
Q ss_pred ccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 112 ITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 112 ~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
++++...+++....|+++.+++.++++|+++..+++|+.+.+.|+.+..
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 9999999999999999999999999999999999999999999987754
No 43
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.52 E-value=2.1e-06 Score=69.45 Aligned_cols=129 Identities=15% Similarity=0.066 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 98 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 98 (178)
.+++++++++++|+...+..|...++. +|.....+....+.++++++.. .++. ....+..++..+ +
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~--~P~~~~~~R~~~a~l~l~~~~~----~~~~-------~~~~~~~~~~~~-l 69 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESL--GPVGGAAMIYSVSGLLLLLTVG----FPRL-------RQFPKRYLLAGG-L 69 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHHHHcc----cccc-------ccccHHHHHHHh-H
Confidence 467789999999999999999987765 8999999999898888876521 1111 011111222222 3
Q ss_pred HHHHHH-HHHHHhh----ccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 99 GFAIGY-VTTLQIK----ITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 99 ~~~~~~-~~~~~i~----~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
+..... +.+..++ ..++...+++.++.|+++.++++++++|+++..+++|+.+.+.|+.+...
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 333332 2234443 45677778899999999999999999999999999999999999876543
No 44
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.46 E-value=5.5e-06 Score=66.07 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=110.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhh
Q psy5010 16 FSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIG 95 (178)
Q Consensus 16 ~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (178)
.+..|++.++.+.+.|+.--.+.|-. ++ .++.++..|..+.+.+++..+....+++.+..+. .-+++.+..+..+
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~~--~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~--~~~p~~~~~~~l~ 78 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-EP--LPATEILAHRVIWSFPFMLALLFLLRQWRELKQL--LKQPKTLLMLALT 78 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-cc--CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HhCcHHHHHHHHH
Confidence 34579999999999999988887775 54 3789999999999999998888887776665541 2345566555555
Q ss_pred HHHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 96 GLCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 96 gv~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
+.+- ..|...| |+.+.-..+..|.=-+++|++.+++|.++++|.++..|++...+...||....+
T Consensus 79 a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 79 ALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 5444 3455555 777777777888767899999999999999999999999999999999965443
No 45
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.44 E-value=6.8e-06 Score=66.56 Aligned_cols=124 Identities=13% Similarity=0.010 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHH
Q psy5010 21 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 100 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 100 (178)
.+..++++++|+...+..|...++ .+|.....+...++.+.+++... .+. .+ +..++..|++..
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~~~l~~~~~--~~~---------~~---~~~~~~~g~~~~ 69 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHN--MPPLMLAGLRFMLVAFPAIFFVA--RPK---------VP---LNLLLGYGLTIS 69 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhc--CCC---------Cc---hHHHHHHHHHHH
Confidence 356889999999999999987765 58999999998887766655431 110 01 112223344333
Q ss_pred HHHHH-HHHHhhc-cCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 101 AIGYV-TTLQIKI-TSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 101 ~~~~~-~~~~i~~-~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
...+. .+...++ .++...+++.+..|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 70 FGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 33332 2345565 466778888899999999999999999999999999999999987654
No 46
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.41 E-value=4.1e-06 Score=66.21 Aligned_cols=130 Identities=9% Similarity=0.211 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhc--ccccccchhhhHhhh
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQD--YADLNTAYFWLFLPI 94 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 94 (178)
...|+++.++++++.++..++.+|.+|+.+.+.+.........+.++.++.....+ ..+..+ +.+.++...|..++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSD-GSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCchhhcchHHHHHHHH
Confidence 36899999999999999999999999988777888887778888887776654432 222211 112345556665566
Q ss_pred hHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHH
Q psy5010 95 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWV 151 (178)
Q Consensus 95 ~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~l 151 (178)
.++.|...++ .+|+.+...=+.......+++.++++++||.++|....+|..+
T Consensus 191 ~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 6666655544 4666666666677777889999999999999999999999765
No 47
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.26 E-value=1.8e-06 Score=60.84 Aligned_cols=67 Identities=7% Similarity=0.050 Sum_probs=50.1
Q ss_pred HHHHHHHHHH-HHhhccC-chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhH
Q psy5010 98 CGFAIGYVTT-LQIKITS-PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 164 (178)
Q Consensus 98 ~~~~~~~~~~-~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~ 164 (178)
.....++..+ ..+++.+ ...+++..-+..+.+++.|+++|||++|+.+++|+.+++.|+...+...+
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3334444433 4555544 44556666678899999999999999999999999999999988766543
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.22 E-value=9.6e-06 Score=65.60 Aligned_cols=132 Identities=9% Similarity=0.026 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHH
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 99 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 99 (178)
|++++++++++|+...+..|+.. +.++.+.. ...++..++........+.. ...+..+..-+..|++=
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPE-------FWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCc-------ccccHHHHHHHHHHHHH
Confidence 68899999999999999999864 33454443 24445554444433322110 01133343334444443
Q ss_pred HHHHHHHHHHhhccCchhhhhhhc-hhHHHHHHHHHHhcCCcccccc----hhhhHHhhhhhhHHHHHh
Q psy5010 100 FAIGYVTTLQIKITSPLTHNISGT-AKACAQTVIASYWYNEVKPFLW----WVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~sv~~~-l~~v~~~i~g~~~f~e~~t~~~----~iG~~lil~g~~l~~~~k 163 (178)
...+++.+.++++.+....-.+.+ +.++..+++|.++|||+.+..+ ++|.++++.|+++....+
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 334456667889888766655555 7888999999999999999999 999999999998876654
No 49
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.16 E-value=3.7e-05 Score=60.72 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHH
Q psy5010 22 VYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFA 101 (178)
Q Consensus 22 ~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 101 (178)
.+++.+++++|.|.+..||..++ ++.+.... .....+...+.....+. ++. ++..+...|.+++..|++ +.
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~~~g~~-t~ 219 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLLQTDF-ATV---QQTNPFPIWLLLVLAGLI-TG 219 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHHHhcc-Ccc---cccCchhHHHHHHHHHHH-HH
Confidence 36788999999999999996442 22232221 22222222222211111 100 000112367777778877 55
Q ss_pred HHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHh
Q psy5010 102 IGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYW 136 (178)
Q Consensus 102 ~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~ 136 (178)
+.|..+ ..+++.+|.+.++..+++|+++.++|++.
T Consensus 220 i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 220 TPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 666665 78999999999999999999999999764
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.16 E-value=2.5e-05 Score=63.45 Aligned_cols=131 Identities=12% Similarity=0.146 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhhcCCCCCc--hhHHHHHHhHHHHHHHHHHHHHcC-ChHHHhcccccccchhhhHhhhhHHHHHHHHHHH
Q psy5010 30 SLALYSIHTKKVLPCVNNE--IWLLSYYNNVYSSIILLFVSGLFG-ELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVT 106 (178)
Q Consensus 30 ~~a~~~i~~kk~~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~ 106 (178)
++..+.+.+++..++...+ |..+++-+...+.+...+.....+ +. .+...+......+++-+....+.
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK---------SRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC---------CCcChHHHHHHHHHHHHHHHHHH
Confidence 4455678888876654434 778888888877777666655444 11 11112222344555555555666
Q ss_pred HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHH
Q psy5010 107 TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 107 ~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~ 169 (178)
..+++.++..+..+.-..+++..+++|+++++++.+..++++..++..|+.++...+.++++.
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 788899999999999999999999999999999999999999999999999988876554443
No 51
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.15 E-value=7.6e-05 Score=59.06 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhH
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 96 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 96 (178)
...+..+.+..++.++......|+..++ ..++..........+.+...+..... ..... .....+......+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~ 76 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLE--PRGLR-----PALRPWLLLLLLA 76 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhh--ccccc-----ccccchHHHHHHH
Confidence 4578888889999999999999997665 23555665656666655533222211 10000 1111123344555
Q ss_pred HHHHHHHHHH-HHHhhccCchhhhhhhchhHHHHHHHHH-HhcCCcccccchhhhHHhhhhhhHHHHHhH
Q psy5010 97 LCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIAS-YWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 164 (178)
Q Consensus 97 v~~~~~~~~~-~~~i~~~~~~~~sv~~~l~~v~~~i~g~-~~f~e~~t~~~~iG~~lil~g~~l~~~~k~ 164 (178)
.+........ +..++++++...+......|++.+++++ ++++|+++..++.|..+.+.|+++......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 5555555444 4679999999999999999999999996 777999999999999999999987665443
No 52
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.08 E-value=1.7e-05 Score=55.17 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=49.7
Q ss_pred HHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 98 CGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 98 ~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
++..+.+..+ ..+++.+.......-.+.++.++++|+++|||++|+.+++|+++++.|+.+..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4444444444 56777776666665668999999999999999999999999999999987643
No 53
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.05 E-value=5.2e-05 Score=62.49 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHH
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 99 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 99 (178)
|-++++..+........+.++ +.+ .|..+.+.+...-.++..+.........+... .....|+..++.|++=
T Consensus 18 gQ~lsl~~~~t~~~s~~l~~~---~~~-~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~----~~~~~~w~y~lla~~D 89 (334)
T PF06027_consen 18 GQVLSLCITGTGTFSSLLANK---GVN-IPTFQSFFNYVLLALVYTPILLYRRGFKKWLK----VLKRPWWKYFLLALLD 89 (334)
T ss_pred HHHHHHHHHhHHHHHHHHHhc---Ccc-CcHHHHHHHHHHHHHHHhhhhhhccccccchh----hcchhHHHHHHHHHHH
Confidence 444444444444444444444 222 35555555555544444454443322111111 1123444566678888
Q ss_pred HHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHH
Q psy5010 100 FAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 165 (178)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~ 165 (178)
...|+....+.++++-+...+......+++.++|+++++++.++.+++|..++++|+.+.......
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 888999889999999999999999999999999999999999999999999999999876666543
No 54
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.01 E-value=9.1e-05 Score=51.35 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHhhccC-chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 108 LQIKITS-PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 108 ~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
..+|+.+ .+.+++..-+..+.+++.|+++|||++|+.+++|+++++.|+...+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4555554 5567777778889999999999999999999999999999998653
No 55
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.93 E-value=2.1e-05 Score=54.69 Aligned_cols=66 Identities=3% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHHHHHHHHHH-HHhhccC-chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 97 LCGFAIGYVTT-LQIKITS-PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 97 v~~~~~~~~~~-~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
+.+...++..+ .++++.+ ...+++..-+..+.+++.|+++|||++|+.+++|+.+++.|+.+.+..
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34444444433 4566655 455666677788999999999999999999999999999999987654
No 56
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.90 E-value=0.00063 Score=54.96 Aligned_cols=105 Identities=14% Similarity=-0.006 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
..|+.+.+++.++++......|...++ .+|.+...+.+.++.++++++...... ..+.+.|...+..|.
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~--~~~~~~~~~R~~~a~l~l~~~~~~~~~---------~~~~~~~~~~~~~g~ 79 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPL--VGAPGVTALRLALGTLILIAIFKPWRL---------RFAKEQRLPLLFYGV 79 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhHHhc---------cCCHHHHHHHHHHHH
Confidence 579999999999999999999988775 489999999999999888776432111 012234434445555
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHH
Q psy5010 98 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIA 133 (178)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g 133 (178)
+....++..+..++++++...++.....|+++.+++
T Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 544445555678899988888888888898887776
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.85 E-value=5.8e-05 Score=51.81 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=51.7
Q ss_pred HHHHHHHHH-HHhhccC-chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 99 GFAIGYVTT-LQIKITS-PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 99 ~~~~~~~~~-~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
+...+|... ..+|+.+ .+.+++..-...+.+++.|+++|||++|+.+++|+.+++.|+...+..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 333444443 5667655 667888889999999999999999999999999999999999876543
No 58
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.78 E-value=8e-05 Score=51.31 Aligned_cols=64 Identities=8% Similarity=0.010 Sum_probs=50.7
Q ss_pred HHHHHHHHHH-HHhhccC-chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 98 CGFAIGYVTT-LQIKITS-PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 98 ~~~~~~~~~~-~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
.+...++... ..+|+.+ .+.+++..-+..+.+++.|+++|||++|+.+++|+.+++.|+...+.
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3334444333 4566655 56788888899999999999999999999999999999999987643
No 59
>KOG4510|consensus
Probab=97.76 E-value=7.1e-06 Score=64.90 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 98 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 98 (178)
.|..+..++ ..+...+++.+|.... +|.++.....+.-+....|..+..... .+ .+...-.++++-|++
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~--v~-----gp~g~R~~LiLRg~m 106 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQP--VI-----GPEGKRKWLILRGFM 106 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeee--ee-----cCCCcEEEEEeehhh
Confidence 577777777 6666667777776553 566666555333333333333332221 11 111122245667777
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHH
Q psy5010 99 GFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 159 (178)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~ 159 (178)
|+..-+..|++..+.+-....++....|+++++++|.+++|+.|....+|..+.+.|+.+.
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI 167 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI 167 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEE
Confidence 7777777788888888788888999999999999999999999999999999999999763
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.68 E-value=0.0014 Score=47.28 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHH
Q psy5010 21 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 100 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 100 (178)
.++++.+-.+.++....--++.++.+ ||+...+.+...+.+.+..+....++. +..+ .....| +....|++|-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~----~~~~p~-w~~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLAS----LSSVPW-WAYLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccch----hccCCh-HHhccHHHHH
Confidence 45677777777777777777666554 699999999999999998888877654 2221 111223 2344788888
Q ss_pred HHHHHHHHHhhccCchhhhhhhchhHH-HHHHHHHH----hcCCcccccchhhhHHhhhhhh
Q psy5010 101 AIGYVTTLQIKITSPLTHNISGTAKAC-AQTVIASY----WYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~sv~~~l~~v-~~~i~g~~----~f~e~~t~~~~iG~~lil~g~~ 157 (178)
..-++....+.+.++...........+ .+.++.-+ .-++++++.+++|.++++.|+.
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 777887788999998888776544443 34444443 2235899999999999999975
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.62 E-value=0.0012 Score=54.58 Aligned_cols=139 Identities=16% Similarity=0.044 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHH--HHHHHHH-HcCChHHHhcccccccchhhhHhhh
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSI--ILLFVSG-LFGELKTVQDYADLNTAYFWLFLPI 94 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~--~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (178)
..|+++.+++++|++.+.+-.|| .++ -++|.. |- ..+.. ++.|... ..++ +++.+.-...++..+..-++
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~-W~-v~gi~~wl~~~~~~g~~~~-~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETM-WS-VGGIFSWLILPWLIAALLL-PDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC---CchhHH-HH-HHHHHHHHHHHHHHHHHHh-hhHHHHHHhcCHHHHHHHHH
Confidence 46999999999999999999998 443 456665 43 22221 1222111 1111 22222112245556666666
Q ss_pred hHHHHHHHHHHHHHHhhccCc-hhhhhhhchhHHHHHHHHHHhcCCcc---cc----cchhhhHHhhhhhhHHHHHh
Q psy5010 95 GGLCGFAIGYVTTLQIKITSP-LTHNISGTAKACAQTVIASYWYNEVK---PF----LWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 95 ~gv~~~~~~~~~~~~i~~~~~-~~~sv~~~l~~v~~~i~g~~~f~e~~---t~----~~~iG~~lil~g~~l~~~~k 163 (178)
.|++=...+...+..+++.|- .+..+..-+.-+..++++.+++||.- +. ...+|.++++.|+.+-+++-
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 776665666666677777663 23333334577899999999999753 22 36788899999998888753
No 62
>KOG3912|consensus
Probab=97.55 E-value=0.00045 Score=55.23 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=103.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHH---Hhcccccccchhhh-
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKT---VQDYADLNTAYFWL- 90 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~- 90 (178)
+--..|+++.+++-+..|...++-+|.+++++++|.+...|..+++.+++..+.....-.+. ....+ +-..+.|.
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~-~g~~eD~~~ 250 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP-RGVLEDWGD 250 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCC-CcchhhHHH
Confidence 33367999999999999999999999999889999999999999997765544432211110 00000 00011111
Q ss_pred --------HhhhhHHHHHHHHHHHH-----HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 91 --------FLPIGGLCGFAIGYVTT-----LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 91 --------~l~~~gv~~~~~~~~~~-----~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
-.++.+..++......| ..-|..|+++=.+.-.++..+.=+++..+..|.++..|+.|-++.+.|.+
T Consensus 251 ~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~ 330 (372)
T KOG3912|consen 251 AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGII 330 (372)
T ss_pred HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233344444433322 24578899999999999998888888888899999999999999999999
Q ss_pred HHHHH
Q psy5010 158 AYTFV 162 (178)
Q Consensus 158 l~~~~ 162 (178)
+|+-.
T Consensus 331 lY~~i 335 (372)
T KOG3912|consen 331 LYNQI 335 (372)
T ss_pred HHHHH
Confidence 98754
No 63
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.55 E-value=0.00011 Score=58.08 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=70.7
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 87 YFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 87 ~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
+....+...+++=...|...|..++..+|.++.+....|.+++.++++++++.+++..||+++.+.+.|+.+........
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 34456778888888888998999999999999999999999999999999999999999999999999998876655443
No 64
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.52 E-value=0.0015 Score=52.27 Aligned_cols=127 Identities=12% Similarity=0.028 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
..|+...+++.+.|..|....|-. +.|++....=++.--.+.-+.+....++ +. .+...|. -++.|+
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~------~~k~~~~-nil~G~ 203 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PF------FEKKSWK-NILTGL 203 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcccc--cc------cccchHH-hhHHHH
Confidence 459999999999999999997773 3467777665543322222222222211 11 1223343 344555
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCccccc----chhhhHHhhhhhh
Q psy5010 98 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFL----WWVSNWVVLFGSA 157 (178)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~----~~iG~~lil~g~~ 157 (178)
+=...|.+.+...++.|..+.-..+-+..+++++.|++++||+=+.. .++|.++++.|..
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 54455666677888899888888888899999999999999987766 5567777777764
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.43 E-value=0.00081 Score=53.76 Aligned_cols=115 Identities=7% Similarity=-0.061 Sum_probs=72.5
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhh-chhH
Q psy5010 48 EIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISG-TAKA 126 (178)
Q Consensus 48 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~-~l~~ 126 (178)
+|.+.+.-..+-+.++-+...++.+... ..+...+..-+++|++=...+...|...++.|-.++-.++ -+.-
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~-------~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QL 83 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAF-------SMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQL 83 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHH
Confidence 5667666665555555554444432210 0123455556677776666666666666666654444444 2466
Q ss_pred HHHHHHHHHhcCCcccccchh----hhHHhhhhhhHHHHHhHHHHHH
Q psy5010 127 CAQTVIASYWYNEVKPFLWWV----SNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 127 v~~~i~g~~~f~e~~t~~~~i----G~~lil~g~~l~~~~k~~~~~~ 169 (178)
+.++++|+++|||.-+..+++ ++++++.|+.+-++.++++++.
T Consensus 84 vg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~ 130 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKS 130 (269)
T ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 778999999999987766544 6788999998877766555543
No 66
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.08 E-value=0.0014 Score=43.98 Aligned_cols=55 Identities=11% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHHHHHHHHH-HHhhccC-chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHh
Q psy5010 98 CGFAIGYVTT-LQIKITS-PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVV 152 (178)
Q Consensus 98 ~~~~~~~~~~-~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~li 152 (178)
.+...++..+ .++|+.+ .+.+++..-+..+.+++.|+++|||++|+.+++|+.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3444454444 4566655 34456666788899999999999999999999998765
No 67
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.00019 Score=56.31 Aligned_cols=138 Identities=7% Similarity=-0.022 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 98 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 98 (178)
.+++.+++-++.|....+...|.. -+|.+.+.-..+-+.++-+.+..+..+ ..+...+..-+++|.+
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~G----G~p~qQ~lGtT~GALifaiiv~~~~~p---------~~T~~~~iv~~isG~~ 68 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFG----GKPYQQTLGTTLGALIFAIIVFLFVSP---------ELTLTIFIVGFISGAF 68 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecC----CChhHhhhhccHHHHHHHHHHheeecC---------ccchhhHHHHHHhhhH
Confidence 457788889999988887777743 257777776666666665555444321 1233344444555555
Q ss_pred HHHHHHHHHHHhhccCchhhhhhh-chhHHHHHHHHHHhcCCcccccch-h---hhHHhhhhhhHHHHHhHHHHHH
Q psy5010 99 GFAIGYVTTLQIKITSPLTHNISG-TAKACAQTVIASYWYNEVKPFLWW-V---SNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~sv~~-~l~~v~~~i~g~~~f~e~~t~~~~-i---G~~lil~g~~l~~~~k~~~~~~ 169 (178)
=...+...|..++..|...+..++ -..-+-++++|++.|||.-++.+. + .+++++.|.++-++.++.+|+.
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 444555566665555544333333 246788999999999998887754 3 4678889988877766544443
No 68
>KOG2766|consensus
Probab=97.04 E-value=0.00036 Score=55.11 Aligned_cols=134 Identities=12% Similarity=0.043 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhh-H
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIG-G 96 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g 96 (178)
..|++++++.+-+||..++.-....++. +..+.+....++++++-.+-.++. ..+... -+|+ |-...+. .
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn~--d~~elm~~lgLfGaIIsaIQ~i~~--~~~~~t--l~w~---~~i~~yl~f 235 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKNA--DRVELMGFLGLFGAIISAIQFIFE--RHHVST--LHWD---SAIFLYLRF 235 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHhhh--ccceee--Eeeh---HHHHHHHHH
Confidence 4799999999999999999988877754 678888888888887776653332 111111 0122 2111121 1
Q ss_pred HHHHHHHHHHH-HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 97 LCGFAIGYVTT-LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 97 v~~~~~~~~~~-~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
.+..++-|+.. ..+|.+|++.+++--...+..+.++ ..||-++++.-.+.-+.+..|.++|+..
T Consensus 236 ~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 236 ALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred HHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 12222223332 3578899999988777777888777 7788889999999999999999999654
No 69
>KOG2234|consensus
Probab=96.94 E-value=0.035 Score=45.82 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC--CCCchhHHHHHHhHHHHHHHHHHHHHcCCh--HH-Hhccc-cc-ccchhhhHhhh
Q psy5010 22 VYGVIASASLALYSIHTKKVLPC--VNNEIWLLSYYNNVYSSIILLFVSGLFGEL--KT-VQDYA-DL-NTAYFWLFLPI 94 (178)
Q Consensus 22 ~~~l~s~~~~a~~~i~~kk~~~~--~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~--~~-~~~~~-~~-~~~~~~~~l~~ 94 (178)
+..+.-.+..+.+....|...++ .+..|.+..+-.-.+-.+++....+.+... .. ..... .. ..+..-..+..
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 34444455556666666654332 234566666666666666666665554211 11 11100 01 12323334666
Q ss_pred hHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 95 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 95 ~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
.+.+=...|...|......+|+++.+...+|...+.++++++++++++..||....+-..|+.+.+
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 777777888777788999999999999999999999999999999999999999999999998776
No 70
>KOG4314|consensus
Probab=96.46 E-value=0.016 Score=44.30 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=84.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHH----HHH-HHHHcCChHHHhcccccccch
Q psy5010 13 AGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSII----LLF-VSGLFGELKTVQDYADLNTAY 87 (178)
Q Consensus 13 ~~~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~----l~~-~~~~~~~~~~~~~~~~~~~~~ 87 (178)
+..-++.|+.+++.|++..|+|.+..|+..-+-+.. +...+.+..+..= .+| +.+.....++.. ++...
T Consensus 129 ~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~q----sFA~~ 202 (290)
T KOG4314|consen 129 EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALILAFTGVEHLQ----SFAAA 202 (290)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH----HHhhC
Confidence 555679999999999999999999999986543211 2222222222211 111 111111222222 12344
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 88 FWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 88 ~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
.|+.++..+.+..+.|+..-..+..+.|.-.|+=....-..-+.+..++-+-..+.....|..++..|.++....
T Consensus 203 PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 203 PWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred CchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 677777777777777766555566666766664322222333455555444477888889999999998765543
No 71
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.078 Score=38.76 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
+...+..+.+-.+-....-.--++.+..+ +|.--...+...+...+..+....++.++... -....| +....|+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~----~~~~pw-W~~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAA----VASAPW-WAWIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhh----ccCCch-HHHHccc
Confidence 45566777777777777666666544443 68888888888888888888777544332210 111223 2344567
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhc-hhHHHHHHHHHHhcC----CcccccchhhhHHhhhhhhHHH
Q psy5010 98 CGFAIGYVTTLQIKITSPLTHNISGT-AKACAQTVIASYWYN----EVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~sv~~~-l~~v~~~i~g~~~f~----e~~t~~~~iG~~lil~g~~l~~ 160 (178)
+|-..-++......+.+++++..... -.-+.+.++.-+=+. .++|...++|+++++.|.++..
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 77655555556677777766655443 233444444444322 3699999999999999965443
No 72
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.09 E-value=0.0072 Score=49.25 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhH
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGG 96 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 96 (178)
...|..+++.++++.+.-..++||...+.+.++..-. .+..+.. -++..|..++ .-
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~~~~~l-----~~~~W~~G~~-~~ 60 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SGGRSYL-----RRPLWWIGLL-LM 60 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------chhhHHH-----hhHHHHHHHH-HH
Confidence 4579999999999999999999997544321111100 0000010 1121222222 22
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 97 LCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 97 v~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
..|-..+ +.+....++.-++..+.+.-+...+++-++++|+++...+.|.++++.|..+..
T Consensus 61 ~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 61 VLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred hcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 2333333 345666677778888888889999999999999999999999999999986643
No 73
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.70 E-value=0.24 Score=40.94 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
..|+++..+.+++.+.+.+=.||. |+ -++|...-..-+-.-+.+|.....-+.|++.+.-...+.+.+....+.|+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~---WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KG---WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CC---ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 579999999999999999998986 43 35666544333222334454432222333322211223233332222221
Q ss_pred HHHHHHHHHH-HHhhccC-chhhhhhhchhHHHHHHHHHHhcC-------CcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 98 CGFAIGYVTT-LQIKITS-PLTHNISGTAKACAQTVIASYWYN-------EVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 98 ~~~~~~~~~~-~~i~~~~-~~~~sv~~~l~~v~~~i~g~~~f~-------e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
+ ..+.=..| ..+++.+ ++..++.--+..++.+++-.++.+ ++-....++|.++++.|+..-.++-..|
T Consensus 82 l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 82 L-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred H-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 1 01111222 3455555 344444444455555666544432 2223458899999999998877775433
No 74
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.54 E-value=0.011 Score=46.90 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHH
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCG 99 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 99 (178)
|++.+++|++++...-+=.||. +.. |++-.+.+......+.-+.+.+..+ .+. ++.+-.+.|.+=
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~-~p~-----------f~p~amlgG~lW 65 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTG--DGFFFQWVMCSGIFLVGLVVNLILG-FPP-----------FYPWAMLGGALW 65 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCC--CcHHHHHHHHHHHHHHHHHHHHhcC-CCc-----------ceeHHHhhhhhh
Confidence 6788899999999888888885 322 5655555443333332232222222 111 111122222222
Q ss_pred HHHHHHHHHHhhccC-chhhhhhhchhHHHHHHHHHH-hcCCc-----ccccchhhhHHhhhhhhHHHHHhHHHH
Q psy5010 100 FAIGYVTTLQIKITS-PLTHNISGTAKACAQTVIASY-WYNEV-----KPFLWWVSNWVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 100 ~~~~~~~~~~i~~~~-~~~~sv~~~l~~v~~~i~g~~-~f~e~-----~t~~~~iG~~lil~g~~l~~~~k~~~~ 167 (178)
...|....-.++..| +.-..+.+..+-+..=..|-+ +|+++ -++.+++|.++++.|..+|.+-|.+++
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 222333333444444 222333333333443333322 45442 445699999999999999988776653
No 75
>KOG1441|consensus
Probab=94.87 E-value=0.06 Score=44.20 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHH
Q psy5010 27 ASASLALYSIHTKKVLP--CVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGY 104 (178)
Q Consensus 27 s~~~~a~~~i~~kk~~~--~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 104 (178)
.-++....+++-|+.++ +.+ -|+.++......+...+...... +..+ .++..+...|..++-.|++.+....
T Consensus 25 w~~~~v~~~~~nK~il~~~~f~-~p~~lt~~~~~~~~l~~~v~~~l-~~~~----~~~~~~~~~~~~llpl~~~~~~~~v 98 (316)
T KOG1441|consen 25 WYVLSVGVIILNKYILSKYGFP-FPITLTMLHLFCGALALLVIKVL-KLVP----PSKISSKLPLRTLLPLGLVFCISHV 98 (316)
T ss_pred HhhhheeeEEeeHhhhccCCCC-CccHHHHHHHHHHHHHHHHHHHh-cCCC----CCccccccchHHHHHHHHHHHHHHH
Confidence 33334445566677777 443 35555555444444444333222 2111 0111133455556666766665555
Q ss_pred HHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhh
Q psy5010 105 VTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGS 156 (178)
Q Consensus 105 ~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~ 156 (178)
.....+++++-..+.++.+++|+++.++++++.+|..+...+..+..+..|+
T Consensus 99 ~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV 150 (316)
T KOG1441|consen 99 LGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV 150 (316)
T ss_pred hcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence 5556788999999999999999999999999999998876655555555554
No 76
>KOG2765|consensus
Probab=92.57 E-value=0.08 Score=44.16 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 93 PIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 93 ~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
+..+.+=|+-+|+.-.+++.++....++++.....++.++|..+-+|++|....++..+.+.|+++.+..+.++
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 34455556666665568999999999999999999999999999999999999999999999998877665443
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.45 E-value=0.31 Score=33.92 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=32.0
Q ss_pred hchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhH
Q psy5010 122 GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 122 ~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l 158 (178)
+.+.-+++.+.|+++.+|..+...++|+.+++.|+.+
T Consensus 75 Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 75 NSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred hHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4567789999999988888899999999999999753
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=92.29 E-value=5.9 Score=33.04 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHhhhcCCCCCchhHHHHHHhH---HHHHHH-HHHHHH---c-CChHHHhcccc
Q psy5010 18 ISGTVYGVIASASLALYS-------IHTKKVLPCVNNEIWLLSYYNNV---YSSIIL-LFVSGL---F-GELKTVQDYAD 82 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~-------i~~kk~~~~~~~~~~~~~~~~~~---~a~~~l-~~~~~~---~-~~~~~~~~~~~ 82 (178)
-.|++.++++.+.+++|+ ...+.. .+.+.++.....-+.. .+..+. +..+.. . ++.+...+.
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~-- 249 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF-- 249 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc--
Confidence 469999999999999999 433332 1123344433322322 222211 111121 1 111101111
Q ss_pred ccc----chhhhHhhhhHHHHHHHHHHHHHHhhccCchhhh----hhhchhHHHHHHHHHHhcCCccc------ccchhh
Q psy5010 83 LNT----AYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHN----ISGTAKACAQTVIASYWYNEVKP------FLWWVS 148 (178)
Q Consensus 83 ~~~----~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~s----v~~~l~~v~~~i~g~~~f~e~~t------~~~~iG 148 (178)
..+ ...+....+.|++=...+++..+.-++.+..... +-..+.-+++++.|+ ++||.=+ ...++|
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 011 1122222333333333334434555555433222 222556689999998 5999877 457899
Q ss_pred hHHhhhhhhHHHH
Q psy5010 149 NWVVLFGSAAYTF 161 (178)
Q Consensus 149 ~~lil~g~~l~~~ 161 (178)
.++++.|..+..+
T Consensus 329 ~vliI~g~~lig~ 341 (345)
T PRK13499 329 CVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877554
No 79
>KOG4314|consensus
Probab=90.18 E-value=0.18 Score=38.73 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=52.9
Q ss_pred HHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHh
Q psy5010 103 GYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 103 ~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k 163 (178)
||.....+++.+|+..+-+..-+..+.-+++|+.++|.+....++...+.++|+...++..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 5665578999999999999999999999999999999999999999999999987666543
No 80
>KOG3912|consensus
Probab=89.42 E-value=2.1 Score=34.80 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhH
Q psy5010 95 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 95 ~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l 158 (178)
.+++-....-..|-.+..++++.+.|.--.-.+++-+++..+++.+++..||+|+..+.+|+..
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlvi 155 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVI 155 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhe
Confidence 4444444445555567778888888776666788899999999999999999999999999854
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=88.86 E-value=0.65 Score=37.87 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=48.6
Q ss_pred cchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhhc-hhHHHHHHHHHHhcCCc--cccc----chhhhHHhhhhhh
Q psy5010 85 TAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGT-AKACAQTVIASYWYNEV--KPFL----WWVSNWVVLFGSA 157 (178)
Q Consensus 85 ~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~-l~~v~~~i~g~~~f~e~--~t~~----~~iG~~lil~g~~ 157 (178)
++..|..++....+....-+..-.++++.+++.+..+.+ .=...+++-|..+|+|. .++. ...|..+++.|++
T Consensus 209 ~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~ 288 (300)
T PF05653_consen 209 YPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVF 288 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhh
Confidence 344565444433333333344445777777655444432 23467788888899984 5553 4567788999998
Q ss_pred HHHHHhHHH
Q psy5010 158 AYTFVKQRE 166 (178)
Q Consensus 158 l~~~~k~~~ 166 (178)
+.+..|+.|
T Consensus 289 lL~~~~~~~ 297 (300)
T PF05653_consen 289 LLSSSKDKE 297 (300)
T ss_pred eeeccCchh
Confidence 876654433
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=87.25 E-value=0.05 Score=42.99 Aligned_cols=131 Identities=15% Similarity=0.022 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHH
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLC 98 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 98 (178)
.|....+.|.+.|..|.+..+... .+.+....-+..-..+.-+.+....+|.. .+...|. -.+.|++
T Consensus 152 kgi~~L~iSt~GYv~yvvl~~~f~----v~g~saiLPqAiGMv~~ali~~~~~~~~~--------~~K~t~~-nii~G~~ 218 (288)
T COG4975 152 KGIVILLISTLGYVGYVVLFQLFD----VDGLSAILPQAIGMVIGALILGFFKMEKR--------FNKYTWL-NIIPGLI 218 (288)
T ss_pred hheeeeeeeccceeeeEeeecccc----ccchhhhhHHHHHHHHHHHHHhhcccccc--------hHHHHHH-HHhhHHH
Confidence 488888889999999988877642 34444443333322222223333333221 1233443 3445555
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccc----hhhhHHhhhhhhHHHHH
Q psy5010 99 GFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLW----WVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~----~iG~~lil~g~~l~~~~ 162 (178)
=-..|...+.+-++.+-.+-=-.+-+.-+++++-|+++++|+-|..+ ++|+.+++.|..+....
T Consensus 219 Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 219 WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhee
Confidence 55566776666666664333334455668899999999999988875 56777888877665543
No 83
>KOG1580|consensus
Probab=87.18 E-value=0.72 Score=36.47 Aligned_cols=57 Identities=7% Similarity=0.180 Sum_probs=44.1
Q ss_pred HHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhH
Q psy5010 108 LQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQ 164 (178)
Q Consensus 108 ~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~ 164 (178)
.+++.++=-+.-+-..-||+-.+++|+++.+.+-++....=...|+.|+.++.+...
T Consensus 104 ~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 104 QALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred chhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 455555433333333679999999999999999999999999999999998887533
No 84
>KOG1581|consensus
Probab=86.36 E-value=8.2 Score=31.63 Aligned_cols=139 Identities=7% Similarity=0.099 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CCC------CchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHh
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLP-CVN------NEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFL 92 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~-~~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (178)
..++...=-..+-.+.+++.|+.. .++ .++.-+.+-|.+.+.+.-....-.+. .+ ......|.-.
T Consensus 15 L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k-~~-------~~~~apl~~y 86 (327)
T KOG1581|consen 15 LVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWK-KE-------LSGVAPLYKY 86 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccc-cc-------CCCCCchhHH
Confidence 333333334445566677777542 221 35556666677766665533222111 00 0112233334
Q ss_pred hhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 93 PIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 93 ~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
...++..+.-..+.+-++|++|=-+..+.-.-|-+..+++|.++.+.+.++...+=..++-.|+..++..+..+
T Consensus 87 ~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 87 SLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 45555666556777788999998888888888999999999999999999999999999999998888776554
No 85
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.68 E-value=5.9 Score=26.89 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHh---hccCchhhhhh--hchhHHH----HHHHHHHhcCCcccccchhhhHHhhhhhhH
Q psy5010 94 IGGLCGFAIGYVTTLQI---KITSPLTHNIS--GTAKACA----QTVIASYWYNEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 94 ~~gv~~~~~~~~~~~~i---~~~~~~~~sv~--~~l~~v~----~~i~g~~~f~e~~t~~~~iG~~lil~g~~l 158 (178)
...+.+..++++.|... .++|-..++.. ..+..+. -..+|+++++||+.+..+.|..++++|+++
T Consensus 39 ~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 39 IVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 34445666677766432 34443333322 2233333 356789999999999999999999988853
No 86
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=83.30 E-value=3.6 Score=28.22 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 128 AQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 128 ~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
+=+.+++++++|++++....|.++++++++
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 336778999999999999999999988875
No 87
>KOG1444|consensus
Probab=80.07 E-value=32 Score=28.31 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHhhhcCCCCCc-hhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccc--cccchhhhHhhhhHHHHHHHHHHHHHHhhcc
Q psy5010 37 HTKKVLPCVNNE-IWLLSYYNNVYSSIILLFVSGLFGELKTVQDYAD--LNTAYFWLFLPIGGLCGFAIGYVTTLQIKIT 113 (178)
Q Consensus 37 ~~kk~~~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~ 113 (178)
.-|.....++.+ ...++.+|++.+.+.+...-... +.++++ .-.++.|. -..++-.+.-++.-..++..
T Consensus 30 vNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-----lv~~~~l~~~~~kk~~---P~~~lf~~~i~t~~~slk~l 101 (314)
T KOG1444|consen 30 VNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-----LVNFRPLDLRTAKKWF---PVSLLFVGMLFTGSKSLKYL 101 (314)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-----eeecCCcChHHHHHHc---cHHHHHHHHHHHcccccccc
Confidence 334445555422 33444588888877665543321 122211 11122332 11111111123333567888
Q ss_pred CchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHH
Q psy5010 114 SPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 159 (178)
Q Consensus 114 ~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~ 159 (178)
+--++.+...+.++.+.+...++|+-.++...|.......+|...+
T Consensus 102 nVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 102 NVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred CchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 8888899999999999999999999999999999988888887553
No 88
>KOG2766|consensus
Probab=77.32 E-value=0.91 Score=36.32 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHH
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGL 97 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 97 (178)
+.|..++=+=++|-.........+-++.-..|....+.+...=.++..|...+.... + . .-|.-.++.++
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~--~-~-------~~~~hYilla~ 86 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY--I-K-------AKWRHYILLAF 86 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH--H-H-------HHHHHhhheeE
Confidence 455555544444444444444444333222466666666555555555555544311 1 0 11222333343
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 98 CGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
.---.||....+-++++-+.....-.-......+++|++++.+-.+.++.|.++++.|+.+...+
T Consensus 87 ~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 87 VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 33334455445667777777777776667778899999999999999999999999998765443
No 89
>KOG2922|consensus
Probab=73.21 E-value=0.69 Score=37.93 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=73.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhh
Q psy5010 15 SFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPI 94 (178)
Q Consensus 15 ~~~~~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (178)
+-+..|.++++.+++.-....++.||-.++.... ..- .-.+..+-+ -.+ .|+.-++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~--~~r---------------a~~gg~~yl------~~~-~Ww~G~l 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS--GLR---------------AGEGGYGYL------KEP-LWWAGML 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhh--ccc---------------ccCCCcchh------hhH-HHHHHHH
Confidence 3456788888888888888888877765543110 000 001111101 111 2322222
Q ss_pred hHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 95 GGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 95 ~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
.=..|=..||..| ...+++-++..|++.-+...+++.++++|+++....+|.++++.|......
T Consensus 73 tm~vGei~NFaAY---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 73 TMIVGEIANFAAY---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHhHhhHHHH---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 2224444455544 234445556677788899999999999999999999999999999865443
No 90
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=70.22 E-value=53 Score=26.06 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=70.9
Q ss_pred CCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhh
Q psy5010 43 PCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISG 122 (178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~ 122 (178)
+++++ .+.+.+.|++.+.+.+..+=... ..++. ......|.. ..++-.+.-|+.-..+++.+-.-+++..
T Consensus 32 ~gfnM-nflll~vQSlvcvv~l~iLk~l~-----~~~fR-~t~aK~Wfp---iSfLLv~MIyt~SKsLqyL~vpiYTiFK 101 (309)
T COG5070 32 LGFNM-NFLLLAVQSLVCVVGLLILKFLR-----LVEFR-LTKAKKWFP---ISFLLVVMIYTSSKSLQYLAVPIYTIFK 101 (309)
T ss_pred CCCch-hhHHHHHHHHHHHHHHHHHHHHh-----Hhhee-hhhhhhhcC---HHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence 34555 36777778777777665543321 12221 122334431 1112222234444567777766777777
Q ss_pred chhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 123 TAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 123 ~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
++..++....-..+||.+++......-.+.+.+.+.-++...+.
T Consensus 102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~ 145 (309)
T COG5070 102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQA 145 (309)
T ss_pred cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhH
Confidence 77778888888999999999999999888888887777665543
No 91
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=70.14 E-value=6 Score=22.64 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=7.6
Q ss_pred hhhhHHHHHhHHHHH
Q psy5010 154 FGSAAYTFVKQREME 168 (178)
Q Consensus 154 ~g~~l~~~~k~~~~~ 168 (178)
.|...|+.-|..+.+
T Consensus 21 iGl~IyQkikqIrgK 35 (49)
T PF11044_consen 21 IGLSIYQKIKQIRGK 35 (49)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344556666544333
No 92
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=70.00 E-value=9.8 Score=27.66 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=13.6
Q ss_pred CchhhhhhhchhHHHHHHH-----HHHhcCCcc
Q psy5010 114 SPLTHNISGTAKACAQTVI-----ASYWYNEVK 141 (178)
Q Consensus 114 ~~~~~sv~~~l~~v~~~i~-----g~~~f~e~~ 141 (178)
+.+..+.+-|+-|.+..++ ..++++|.+
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~ 105 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAILAQYLFFSELI 105 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444444445555544444 444555554
No 93
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=69.00 E-value=23 Score=24.39 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=35.5
Q ss_pred hhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHH
Q psy5010 118 HNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYT 160 (178)
Q Consensus 118 ~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~ 160 (178)
++..+-.--+.+.+.++.+-+++++..-++|.++++.|+..-.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 4444555667889999999999999999999999999986543
No 94
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=65.25 E-value=89 Score=26.84 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=17.0
Q ss_pred cchhhhHHhhhhhhHHHHHhHHH
Q psy5010 144 LWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 144 ~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
..+.|.++...|..+|.+.++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888899988888755544
No 95
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=65.23 E-value=5.3 Score=26.27 Aligned_cols=26 Identities=15% Similarity=-0.113 Sum_probs=21.2
Q ss_pred CcccccchhhhHHhhhhhhHHHHHhH
Q psy5010 139 EVKPFLWWVSNWVVLFGSAAYTFVKQ 164 (178)
Q Consensus 139 e~~t~~~~iG~~lil~g~~l~~~~k~ 164 (178)
-.+++..++|+.+++.|..+|..++.
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999975433
No 96
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=64.66 E-value=4.7 Score=28.52 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=10.2
Q ss_pred CCcccccchhhhHHhhhhhhH
Q psy5010 138 NEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 138 ~e~~t~~~~iG~~lil~g~~l 158 (178)
+++.+..+++|.++--.|.++
T Consensus 74 n~~~si~~~~G~vlLs~GLml 94 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLML 94 (129)
T ss_pred cCCcchhhhehHHHHHHHHHH
Confidence 444444555555554444443
No 97
>KOG4812|consensus
Probab=62.44 E-value=26 Score=27.76 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=13.4
Q ss_pred ccccchhhhHHhhhhhhH
Q psy5010 141 KPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 141 ~t~~~~iG~~lil~g~~l 158 (178)
.+-..|++-+++++|.++
T Consensus 219 ~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 219 FNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 455678888888888765
No 98
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=59.58 E-value=11 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=15.3
Q ss_pred HHhhhhhhHHHHHhHHHHHHhhhccCC
Q psy5010 150 WVVLFGSAAYTFVKQREMEAQYNNKYS 176 (178)
Q Consensus 150 ~lil~g~~l~~~~k~~~~~~~~~~~~~ 176 (178)
++++.+.+..+..++|+.+++.+++++
T Consensus 16 ~l~l~~li~~~~~~~r~~~~~l~~~~~ 42 (45)
T TIGR03141 16 ALVLAGLILWSLLDRRRLLRELRRLEA 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655554443
No 99
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=58.14 E-value=9.8 Score=26.95 Aligned_cols=17 Identities=0% Similarity=-0.212 Sum_probs=7.8
Q ss_pred hhhhchhHHHHHHHHHH
Q psy5010 119 NISGTAKACAQTVIASY 135 (178)
Q Consensus 119 sv~~~l~~v~~~i~g~~ 135 (178)
+.+.++-|++..++|.+
T Consensus 71 a~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 71 AFLVYLLPLLALIAGAV 87 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555544433
No 100
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=57.97 E-value=16 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=15.4
Q ss_pred Ccccccchh--h----hHHhhhhhhHHHHHhHHHHHHhh
Q psy5010 139 EVKPFLWWV--S----NWVVLFGSAAYTFVKQREMEAQY 171 (178)
Q Consensus 139 e~~t~~~~i--G----~~lil~g~~l~~~~k~~~~~~~~ 171 (178)
+.+++.||. | +++.+.+.+.-.++|.|+.|+|.
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 555555554 3 33334444444455555544443
No 101
>PRK02237 hypothetical protein; Provisional
Probab=57.37 E-value=10 Score=26.14 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=34.4
Q ss_pred hhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHH
Q psy5010 119 NISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTF 161 (178)
Q Consensus 119 sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~ 161 (178)
+..+-.--+.+.+.++.+-+++++..-++|.++++.|+....+
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3344445577889999999999999999999999999865433
No 102
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=56.11 E-value=10 Score=31.14 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=30.7
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHhhccC-----chhhhhhhchhHHHHHHHHHHhcCCccccc--chhhhHHhhhhhhH
Q psy5010 88 FWLFLPIGGLCGFAIGYVTTLQIKITS-----PLTHNISGTAKACAQTVIASYWYNEVKPFL--WWVSNWVVLFGSAA 158 (178)
Q Consensus 88 ~~~~l~~~gv~~~~~~~~~~~~i~~~~-----~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~--~~iG~~lil~g~~l 158 (178)
.....+..|++-...|.+.-..+...+ |...++ .-++.+.+-++. +++.+.. -..|.++++..+++
T Consensus 71 sv~~A~aGGvvfnlgNillq~aia~aGmSVafpvg~gl----alVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 71 SVLFAMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGL----ALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHhcceeeeeeecce----EEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHH
Confidence 333445556555555555544444433 333332 223334444333 5566532 34466666555544
No 103
>COG3374 Predicted membrane protein [Function unknown]
Probab=55.33 E-value=92 Score=23.78 Aligned_cols=74 Identities=14% Similarity=-0.022 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHhhccCchhhhhhhchhHHHHHHHHHHhcCCccccc--chhhh--HHhhhhhhHHHHHhHHHHH
Q psy5010 93 PIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFL--WWVSN--WVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 93 ~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~--~~iG~--~lil~g~~l~~~~k~~~~~ 168 (178)
...|+.-...+.+.+.-.+.-. ++++...--+.++.-|.-..+...|-. ...|+ +.-+.|++-+.....|+|+
T Consensus 80 lllGi~ll~~ais~~~g~dl~~---~gi~alflGl~~IvyG~~~y~~~mT~~Pla~~~lyil~GLagvlsp~l~ldr~~~ 156 (197)
T COG3374 80 LLLGIVLLSVAISVYKGYDLQV---TGIFALFLGLYTIVYGVVIYNYGMTREPLAALALYILTGLAGVLSPTLALDREKG 156 (197)
T ss_pred HHHHHHHHHHHHHHHcCcchhh---hHHHHHHcchHheeehhhhhccccccCHHHHHHHHHHHhHHHHHhHHHHHhhcCC
Confidence 4445554444555543322211 222222333455555666655544433 33332 2234455556555555444
Q ss_pred H
Q psy5010 169 A 169 (178)
Q Consensus 169 ~ 169 (178)
+
T Consensus 157 ~ 157 (197)
T COG3374 157 K 157 (197)
T ss_pred e
Confidence 3
No 104
>KOG1442|consensus
Probab=54.15 E-value=12 Score=30.38 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=57.9
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccc-cchhhh-----HhhhhHHHHHHHHHHHHHHhhccCchhhhhh
Q psy5010 48 EIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLN-TAYFWL-----FLPIGGLCGFAIGYVTTLQIKITSPLTHNIS 121 (178)
Q Consensus 48 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~ 121 (178)
.|.-++.|+.+....+++.+.-.....+..+.+|+.. +.+... .++..+.+++ --.|++.++-.-+.+=
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~f-----nnlcL~yVgVaFYyvg 134 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISF-----NNLCLKYVGVAFYYVG 134 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhc-----cceehhhcceEEEEec
Confidence 4677777777776666655554332222233333211 111111 1112111111 1257888877666665
Q ss_pred hchhHHHHHHHHHHhcCCcccccchhhhHHhhhhh
Q psy5010 122 GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGS 156 (178)
Q Consensus 122 ~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~ 156 (178)
-.+-.++++++++.+++++-+..-..+-.+++.|.
T Consensus 135 RsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 135 RSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred cchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 56777889999999998877766666666666554
No 105
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=51.68 E-value=38 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=19.6
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHcCC
Q psy5010 48 EIWLLSYYNNVYSSIILLFVSGLFGE 73 (178)
Q Consensus 48 ~~~~~~~~~~~~a~~~l~~~~~~~~~ 73 (178)
.-.++.-|...++.++++.+++.+.+
T Consensus 52 a~~qIiVYvGAI~VLflFvIMll~~~ 77 (186)
T MTH00057 52 ALIFLIVYVGAIAILFLFVIMMLNLT 77 (186)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCch
Confidence 34678888888888888888876543
No 106
>KOG2922|consensus
Probab=51.37 E-value=14 Score=30.45 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=45.7
Q ss_pred cchhhhHhhhhHHHHHHHHHHHHHHhhccCchhhhhhh-chhHHHHHHHHHHhcCCc--cccc----chhhhHHhhhhhh
Q psy5010 85 TAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISG-TAKACAQTVIASYWYNEV--KPFL----WWVSNWVVLFGSA 157 (178)
Q Consensus 85 ~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~~~~~sv~~-~l~~v~~~i~g~~~f~e~--~t~~----~~iG~~lil~g~~ 157 (178)
.+..|.+++....+....-...-.+++...+..++.+. ..=..++++.|.++|+|. .+.. ...|...++.|++
T Consensus 223 ~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~f 302 (335)
T KOG2922|consen 223 YPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIF 302 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheee
Confidence 34556544444444333222222345544444433333 234567888899999985 4443 4567788999998
Q ss_pred HHHHHhHHH
Q psy5010 158 AYTFVKQRE 166 (178)
Q Consensus 158 l~~~~k~~~ 166 (178)
+....|.++
T Consensus 303 lL~~~kd~~ 311 (335)
T KOG2922|consen 303 LLHRTKDME 311 (335)
T ss_pred Eeeeecccc
Confidence 875544433
No 107
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=50.00 E-value=22 Score=26.04 Aligned_cols=12 Identities=0% Similarity=0.105 Sum_probs=4.7
Q ss_pred HHHHhHHHHHHh
Q psy5010 159 YTFVKQREMEAQ 170 (178)
Q Consensus 159 ~~~~k~~~~~~~ 170 (178)
|...|..+++.+
T Consensus 118 ~~~~r~~~~~~~ 129 (154)
T PRK10862 118 FLLARGLSRKLA 129 (154)
T ss_pred HHHHHHHHHhhc
Confidence 333344444433
No 108
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=49.36 E-value=9.7 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=17.7
Q ss_pred hHHhhhhhhHHHHHhHHHHHHhhh
Q psy5010 149 NWVVLFGSAAYTFVKQREMEAQYN 172 (178)
Q Consensus 149 ~~lil~g~~l~~~~k~~~~~~~~~ 172 (178)
+.+++.|+.++.+.++++++.++.
T Consensus 19 ~~~~Figiv~wa~~p~~k~~f~ea 42 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKAFDEA 42 (48)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHH
Confidence 467888999999987766665444
No 109
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=48.57 E-value=1.7e+02 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=14.3
Q ss_pred hhhHHhhhhhhHHHHHhHHHH
Q psy5010 147 VSNWVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 147 iG~~lil~g~~l~~~~k~~~~ 167 (178)
.+..+.+.|...|-..|+|++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHhhhHHhheechhh
Confidence 577788888877776555433
No 110
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=47.62 E-value=24 Score=21.37 Aligned_cols=24 Identities=21% Similarity=0.027 Sum_probs=15.6
Q ss_pred cccccchhhhHHhhhhhhHHHHHh
Q psy5010 140 VKPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 140 ~~t~~~~iG~~lil~g~~l~~~~k 163 (178)
..+...++|..++.++...|+...
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~ 38 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYS 38 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777776665554
No 111
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=47.60 E-value=1.2e+02 Score=23.44 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHH-HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHH
Q psy5010 93 PIGGLCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 93 ~~~gv~~~~~~~~~-~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~ 167 (178)
-+.|++|++..... |..+...+.++.++ ++-.++--+. .+.+|+...+-+++.|++.+++-.
T Consensus 130 P~lGL~GTV~GIm~aF~~i~~~~~~~~a~-------vA~GIseAL~------aTA~GL~vAIPAvi~yn~l~r~~~ 192 (216)
T COG0811 130 PFLGLLGTVWGIMPAFIGIGAGGGADLAV-------VAPGISEALI------ATAIGLFVAIPAVVAYNVLRRKVE 192 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHH-------HHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999988544 55666222222222 2222221111 456677888889999998876533
No 112
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=47.40 E-value=18 Score=20.69 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=11.7
Q ss_pred hHHhhhhhhHHHHHhHHHHHH
Q psy5010 149 NWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 149 ~~lil~g~~l~~~~k~~~~~~ 169 (178)
.++++.+.++.+..+.++-++
T Consensus 14 t~~~l~~l~~~~~~~~r~~~~ 34 (46)
T PF04995_consen 14 TALVLAGLIVWSLRRRRRLRK 34 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666554443
No 113
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=45.07 E-value=27 Score=22.64 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=3.9
Q ss_pred HHHhHHHHHHh
Q psy5010 160 TFVKQREMEAQ 170 (178)
Q Consensus 160 ~~~k~~~~~~~ 170 (178)
...+.++++++
T Consensus 19 ~~rpqkk~~k~ 29 (82)
T PF02699_consen 19 MIRPQKKQQKE 29 (82)
T ss_dssp THHHHHHHHHH
T ss_pred eecHHHHHHHH
Confidence 33333333333
No 114
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=44.66 E-value=17 Score=21.02 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=12.1
Q ss_pred HHhhhhhhHHHHHhHHHHH
Q psy5010 150 WVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 150 ~lil~g~~l~~~~k~~~~~ 168 (178)
.+++.|+..+.+.++++++
T Consensus 19 ~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHcccchhh
Confidence 4566777777776655444
No 115
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=44.52 E-value=29 Score=18.39 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=16.2
Q ss_pred hHHhhhhhhHHHHHhHHHHHHhh
Q psy5010 149 NWVVLFGSAAYTFVKQREMEAQY 171 (178)
Q Consensus 149 ~~lil~g~~l~~~~k~~~~~~~~ 171 (178)
+++++.|...+.+.|++++..+.
T Consensus 6 i~L~l~ga~f~~fKKyQ~~vnqa 28 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNHVNQA 28 (33)
T ss_pred ehhhhhhHHHHHHHHHHHHHhcC
Confidence 45778888888887777665443
No 116
>KOG1619|consensus
Probab=43.00 E-value=49 Score=26.19 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=15.3
Q ss_pred cccccchhhhHhhhhHHH--HHHHHHHHHHH
Q psy5010 81 ADLNTAYFWLFLPIGGLC--GFAIGYVTTLQ 109 (178)
Q Consensus 81 ~~~~~~~~~~~l~~~gv~--~~~~~~~~~~~ 109 (178)
++..+..+|..++...+. -+..+|++|+.
T Consensus 120 ~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~ 150 (245)
T KOG1619|consen 120 ANFYSLHSWLGLCVVILYSLQWVFGFFTFLF 150 (245)
T ss_pred cceeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677654443332 34555666654
No 117
>PF13994 PgaD: PgaD-like protein
Probab=42.99 E-value=39 Score=24.12 Aligned_cols=30 Identities=3% Similarity=-0.085 Sum_probs=16.9
Q ss_pred hhhhHHhhhhhhHHHHHhHHHHHHhhhccC
Q psy5010 146 WVSNWVVLFGSAAYTFVKQREMEAQYNNKY 175 (178)
Q Consensus 146 ~iG~~lil~g~~l~~~~k~~~~~~~~~~~~ 175 (178)
.-..++++.++.+..++++++.|.+.+++|
T Consensus 66 ~y~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr 95 (138)
T PF13994_consen 66 IYLLIALVNAVILILWAKYNRLRFRGRRRR 95 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 333455666666777777665554444443
No 118
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=42.81 E-value=2.2e+02 Score=24.43 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=16.6
Q ss_pred cchhhhHHhhhhhhHHHHHhHH
Q psy5010 144 LWWVSNWVVLFGSAAYTFVKQR 165 (178)
Q Consensus 144 ~~~iG~~lil~g~~l~~~~k~~ 165 (178)
..++|..+.+.|..+|.+.|++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888899999888764443
No 119
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=42.54 E-value=1.5e+02 Score=22.67 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHH-HHHhhccCchhhhhh--hchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHH
Q psy5010 93 PIGGLCGFAIGYVT-TLQIKITSPLTHNIS--GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 93 ~~~gv~~~~~~~~~-~~~i~~~~~~~~sv~--~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~ 169 (178)
-+.|++|++.++.. |..+...+....+.+ |.-+.++ .+..|+.+.+-+++.|++.+.|-++.
T Consensus 130 PllGLLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALi---------------tTA~GL~VAIPAli~yn~f~~ri~~~ 194 (211)
T TIGR02797 130 PFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALL---------------ATAIGLVAAIPAVVIYNVFARSIAGY 194 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788898888654 455654332222111 1222233 35567788889999999988776553
No 120
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=40.83 E-value=21 Score=23.35 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.2
Q ss_pred hhhhhh
Q psy5010 152 VLFGSA 157 (178)
Q Consensus 152 il~g~~ 157 (178)
++.+++
T Consensus 11 v~~~i~ 16 (84)
T TIGR00739 11 LIFLIF 16 (84)
T ss_pred HHHHHH
Confidence 333333
No 121
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=39.77 E-value=35 Score=22.22 Aligned_cols=36 Identities=3% Similarity=0.013 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHh
Q psy5010 128 AQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 128 ~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k 163 (178)
+..+..++..|.+....-++|..+.+....+..+.-
T Consensus 12 ~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~ 47 (100)
T PF03899_consen 12 VLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRV 47 (100)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555677777777888888887776655543
No 122
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=37.42 E-value=2.1e+02 Score=22.67 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHH-HHHhhccCchhhhhh--hchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 93 PIGGLCGFAIGYVT-TLQIKITSPLTHNIS--GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 93 ~~~gv~~~~~~~~~-~~~i~~~~~~~~sv~--~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
-+.|++|++.+... |..+...+....+.+ +.-+..+ .+..|+.+.+-+++.|++...+-++
T Consensus 141 PllGLlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALi---------------tTa~GL~vAIPAliayn~f~~ri~~ 204 (244)
T PRK10414 141 PFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALL---------------ATAIGLVAAIPAVVIYNVFARQIGG 204 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888654 555653332221111 1222223 3556778888889999998776444
No 123
>PF14981 FAM165: FAM165 family
Probab=36.48 E-value=39 Score=19.51 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=12.5
Q ss_pred HHhhhhhhHHHHHhHHHHHH
Q psy5010 150 WVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 150 ~lil~g~~l~~~~k~~~~~~ 169 (178)
.+.+.|+=.|+..|..++.+
T Consensus 21 ClaFAgvK~yQ~krlEak~~ 40 (51)
T PF14981_consen 21 CLAFAGVKMYQRKRLEAKLK 40 (51)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 45667887787766544443
No 124
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=36.47 E-value=21 Score=28.53 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=17.6
Q ss_pred ccccchhhhHHhhhhhhHHHHH
Q psy5010 141 KPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 141 ~t~~~~iG~~lil~g~~l~~~~ 162 (178)
+|..|+++..+++.|+.+..+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999998766543
No 125
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=35.87 E-value=57 Score=17.79 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5010 19 SGTVYGVIASASLALYSIHT 38 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~ 38 (178)
.=++..++.+.+||+|+|.-
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34567888999999999864
No 126
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=35.16 E-value=21 Score=28.77 Aligned_cols=23 Identities=4% Similarity=-0.288 Sum_probs=18.2
Q ss_pred ccccchhhhHHhhhhhhHHHHHh
Q psy5010 141 KPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 141 ~t~~~~iG~~lil~g~~l~~~~k 163 (178)
+|..|+++..+++.|+.+..+.+
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999987665443
No 127
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=34.34 E-value=2.2e+02 Score=22.18 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHH-HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 93 PIGGLCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 93 ~~~gv~~~~~~~~~-~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
-+.|++|++.++.. |..+...+....+.+ ...+...++ .+..|+.+.+-+++.|++..+|-++
T Consensus 135 P~lGLlGTV~Gmi~aF~~i~~~g~~~~~~~--a~GI~~ALi-----------tTa~GL~vAIPAli~yN~f~~ri~~ 198 (227)
T PRK10801 135 PYIGLFGTVWGIMHAFIALGAVKQATLQMV--APGIAEALI-----------ATAIGLFAAIPAVMAYNRLNQRVNK 198 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999888655 555654432222211 111222221 3556778888899999998876554
No 128
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=33.55 E-value=2.5e+02 Score=22.40 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=12.4
Q ss_pred cccchhhhHHhhhhhhHHHHH
Q psy5010 142 PFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 142 t~~~~iG~~lil~g~~l~~~~ 162 (178)
++.-+....+++.|..+|...
T Consensus 68 ~~~~~~~~~l~~~Gglwy~~l 88 (284)
T PF12805_consen 68 GPEALEHALLFLAGGLWYLLL 88 (284)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777665443
No 129
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=33.45 E-value=1.3e+02 Score=19.15 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHH-HhHHHHHHHHHHHHHcCChH
Q psy5010 25 VIASASLALYSIHTKKVLPCVNNEIWLLSYY-NNVYSSIILLFVSGLFGELK 75 (178)
Q Consensus 25 l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~-~~~~a~~~l~~~~~~~~~~~ 75 (178)
.++.+.++.+-+++=-..++.|.+.....+| .++.+..+++......+|..
T Consensus 3 ~~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV 54 (72)
T PF07578_consen 3 FIGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPV 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 3444555554444322222222244444444 67788888888888776644
No 130
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=33.32 E-value=55 Score=25.56 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=26.7
Q ss_pred CcccccchhhhHHhhhhhhHHHHHhHHHHHHh
Q psy5010 139 EVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQ 170 (178)
Q Consensus 139 e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~~ 170 (178)
++++...++|.++.+.|..+...+..++.+-|
T Consensus 115 ~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk 146 (235)
T PF06966_consen 115 PPLNWLDILGIALFLIGFLLETVADQQKYRFK 146 (235)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788899999999999999999887776643
No 131
>PLN02351 cytochromes b561 family protein
Probab=33.13 E-value=2.5e+02 Score=22.32 Aligned_cols=29 Identities=7% Similarity=-0.063 Sum_probs=17.0
Q ss_pred cchhhhHHhhhhh-hHHHHHhHHHHHHhhh
Q psy5010 144 LWWVSNWVVLFGS-AAYTFVKQREMEAQYN 172 (178)
Q Consensus 144 ~~~iG~~lil~g~-~l~~~~k~~~~~~~~~ 172 (178)
.+.+|+.+++.|+ ..+...+.+-||++++
T Consensus 201 vN~~Glliv~fG~~Vv~~~~~p~~kr~~~~ 230 (242)
T PLN02351 201 VNGLGLGLALLSGIVILAAVLPKYQSHSSK 230 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccCCCcc
Confidence 3678888888875 3444444444444333
No 132
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=32.43 E-value=32 Score=19.00 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=13.6
Q ss_pred hhhhHHhhhhhhHHHHHhHHH
Q psy5010 146 WVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 146 ~iG~~lil~g~~l~~~~k~~~ 166 (178)
..|+++++.-.+.|.--.+|.
T Consensus 13 ~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 457777777777777644333
No 133
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=32.40 E-value=1.6e+02 Score=19.78 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=14.1
Q ss_pred chhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 145 WWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 145 ~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
.|.|...-+.+..++....+|.+|
T Consensus 64 ~~aG~laGlAaTGL~e~~t~r~~~ 87 (93)
T PF06946_consen 64 AWAGGLAGLAATGLFEQFTNRSKK 87 (93)
T ss_pred HHHHHHhhhhhhhHHHHHHhhhhh
Confidence 466776666666665555444433
No 134
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=31.59 E-value=59 Score=24.73 Aligned_cols=45 Identities=9% Similarity=-0.070 Sum_probs=36.0
Q ss_pred hhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHH
Q psy5010 121 SGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQR 165 (178)
Q Consensus 121 ~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~ 165 (178)
.-..+++...+.++..++++.+..++++.++...|+....+.+.+
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q 54 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQ 54 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHH
Confidence 345577888999999999999988999999999998766655443
No 135
>PF14927 Neurensin: Neurensin
Probab=31.57 E-value=99 Score=22.36 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=16.4
Q ss_pred HhcCCcccccchhhhHHhhhhhhH
Q psy5010 135 YWYNEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 135 ~~f~e~~t~~~~iG~~lil~g~~l 158 (178)
.-||..++.-.+.|+.+...|..+
T Consensus 89 ~~~n~~Ld~c~laG~~L~~lGg~l 112 (140)
T PF14927_consen 89 ARFNNALDTCKLAGLILLCLGGIL 112 (140)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356777888888887776666533
No 136
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=31.43 E-value=2.3e+02 Score=21.48 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCC
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGE 73 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 73 (178)
..++.+.+-++.|...+...- +. ..-.++.-|...++..+++.+++...+
T Consensus 31 s~l~Li~~f~~vA~l~~ll~a---~F-la~~qIiVYvGAI~VLflFvIMll~~~ 80 (198)
T PRK06638 31 SALFLILTFLSIAGLYFLLGA---EF-LGVVQIIVYVGAVMVLFLFVVMMLDVD 80 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhch---HH-HHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 455555555555554444332 11 245688888888888888888876543
No 137
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.42 E-value=1.1e+02 Score=21.17 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCC-cccccchhhhHHhhhhhhHHHHHhHHHHHHhhh
Q psy5010 126 ACAQTVIASYWYNE-VKPFLWWVSNWVVLFGSAAYTFVKQREMEAQYN 172 (178)
Q Consensus 126 ~v~~~i~g~~~f~e-~~t~~~~iG~~lil~g~~l~~~~k~~~~~~~~~ 172 (178)
.++...+||+.=+- .-+|...|...++=.|.-..+..|.-.+.+++.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rsag~va~~~ 103 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRSAGKVAEQG 103 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 45667777776322 223344443333333333355544444444443
No 138
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=31.18 E-value=1.8e+02 Score=20.81 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=15.6
Q ss_pred ccccchhhhHHhhhhhhHHHHHhHHHHHHhhhccCC
Q psy5010 141 KPFLWWVSNWVVLFGSAAYTFVKQREMEAQYNNKYS 176 (178)
Q Consensus 141 ~t~~~~iG~~lil~g~~l~~~~k~~~~~~~~~~~~~ 176 (178)
+...-..+..+.+.++.......+-+++.+.+++++
T Consensus 27 p~~p~~~~~~l~~la~~~~~~a~~vr~~~~~~~~~~ 62 (138)
T PF11377_consen 27 PPIPWTAGVTLLVLAAVELWLAWQVRRRIEIGPGRR 62 (138)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 333344455555555544444433333333334443
No 139
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=30.90 E-value=38 Score=21.55 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=8.5
Q ss_pred HhhhhhhHHHHHhHHHH
Q psy5010 151 VVLFGSAAYTFVKQREM 167 (178)
Q Consensus 151 lil~g~~l~~~~k~~~~ 167 (178)
+++.|++-+-..|..|+
T Consensus 34 fiisa~lSwkLaK~ie~ 50 (74)
T PF15086_consen 34 FIISAVLSWKLAKAIEK 50 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554433
No 140
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.76 E-value=38 Score=20.75 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=14.6
Q ss_pred hhHHhhhhhhHHHHHhHHHHHHh
Q psy5010 148 SNWVVLFGSAAYTFVKQREMEAQ 170 (178)
Q Consensus 148 G~~lil~g~~l~~~~k~~~~~~~ 170 (178)
-+.+++.|+..+.+.+.+|++..
T Consensus 17 ~~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 17 AFTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHHhcccchhhHH
Confidence 34567777777777665555543
No 141
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=30.05 E-value=1.4e+02 Score=21.65 Aligned_cols=47 Identities=9% Similarity=-0.084 Sum_probs=32.1
Q ss_pred HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 107 TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 107 ~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
++.+++.+..+.++ .-++-...+++.+---+++.++.|+.++..=..
T Consensus 66 ~~lm~~kgi~rm~l----G~~vm~~~~~llw~ggv~~~~IAg~~lv~film 112 (144)
T PF01350_consen 66 WFLMRRKGIGRMSL----GMLVMAVAGYLLWMGGVPPGQIAGVLLVFFILM 112 (144)
T ss_pred HhhhcCCCcchhhH----HHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHHH
Confidence 34555656555553 445666677777778889999999887766544
No 142
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=29.95 E-value=35 Score=23.58 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=5.7
Q ss_pred hhhhhhHHHHHhHH
Q psy5010 152 VLFGSAAYTFVKQR 165 (178)
Q Consensus 152 il~g~~l~~~~k~~ 165 (178)
++.++++|-..|.+
T Consensus 12 ~i~~i~yF~~iRPQ 25 (109)
T PRK05886 12 LIMGGFMYFASRRQ 25 (109)
T ss_pred HHHHHHHHHHccHH
Confidence 34444444443333
No 143
>PF06177 QueT: QueT transporter; InterPro: IPR010387 This entry is represented by Bacteriophage Dp-1, QueT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes [, ], suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.
Probab=29.54 E-value=2.3e+02 Score=20.72 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=19.5
Q ss_pred ceeEeccccCCCccccHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5010 2 GFWLGVDQEDLAGSFSISGTVYGVIASASLALYSIHTKKV 41 (178)
Q Consensus 2 ~~~~gv~~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~kk~ 41 (178)
|+.+|+.++..-..+.+.-.+.+.++.+..+.-.-..||.
T Consensus 48 Gl~lG~~iaNl~sp~G~iD~i~G~l~tlia~~l~~~~~~~ 87 (152)
T PF06177_consen 48 GLTLGCFIANLFSPFGIIDVIFGTLATLIAAYLTYKLKKK 87 (152)
T ss_pred HHHHHHHHHHhcccchhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5567777775422233333445555554444444444443
No 144
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.08 E-value=45 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=8.8
Q ss_pred HhhhhhhHHHHHhHHHHHHh
Q psy5010 151 VVLFGSAAYTFVKQREMEAQ 170 (178)
Q Consensus 151 lil~g~~l~~~~k~~~~~~~ 170 (178)
+.+.+++.+...|..+|++|
T Consensus 16 vl~~~ifyFli~RPQrKr~K 35 (97)
T COG1862 16 VLIFAIFYFLIIRPQRKRMK 35 (97)
T ss_pred HHHHHHHHHhhcCHHHHHHH
Confidence 44445554544444333333
No 145
>COG1971 Predicted membrane protein [Function unknown]
Probab=27.64 E-value=57 Score=24.87 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=21.5
Q ss_pred hhhhchhHHHHHHHHHHhcCCcccccchhhh-HHhhhhh
Q psy5010 119 NISGTAKACAQTVIASYWYNEVKPFLWWVSN-WVVLFGS 156 (178)
Q Consensus 119 sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~-~lil~g~ 156 (178)
++...+.|......|.++=+-.-.+.+|+|. .+.+.|+
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~ 82 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGL 82 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666654444556677764 4455555
No 146
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=27.22 E-value=27 Score=18.09 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=7.4
Q ss_pred ccccchhhhHHhhh
Q psy5010 141 KPFLWWVSNWVVLF 154 (178)
Q Consensus 141 ~t~~~~iG~~lil~ 154 (178)
-+...++|++++..
T Consensus 10 ~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 10 NSLLLLLGLLLLGL 23 (34)
T ss_pred cHHHHHHHHHHHHH
Confidence 34456677644444
No 147
>PLN02810 carbon-monoxide oxygenase
Probab=27.15 E-value=3.1e+02 Score=21.59 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=18.8
Q ss_pred cchhhhHHhhhhhhHHHHHhHHHHHHhhhccCCC
Q psy5010 144 LWWVSNWVVLFGSAAYTFVKQREMEAQYNNKYSR 177 (178)
Q Consensus 144 ~~~iG~~lil~g~~l~~~~k~~~~~~~~~~~~~~ 177 (178)
.+.+|+.+++.|++..-....+....++...|++
T Consensus 197 vN~~Glliv~fg~~V~~~~~~~~~~~~~~~~~~~ 230 (231)
T PLN02810 197 VNFTAIITILYGAFVVLTALAQSPSDEDDYSYSA 230 (231)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcccccc
Confidence 3678888888887643333333333344444544
No 148
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=27.09 E-value=98 Score=16.89 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5010 21 TVYGVIASASLALYSIHT 38 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~ 38 (178)
++..++.+.+|++|+|..
T Consensus 8 Vl~Pil~A~gWa~fNIg~ 25 (36)
T PF06298_consen 8 VLLPILPAAGWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 466788899999999864
No 149
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=26.54 E-value=3.5e+02 Score=21.93 Aligned_cols=127 Identities=17% Similarity=0.073 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHH
Q psy5010 21 TVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGF 100 (178)
Q Consensus 21 ~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 100 (178)
..+.+.+.++--.-.-+-|.+.... .+.-++.+.-.++..+++++.= .+. ..++...|..++.-|+.--
T Consensus 14 ~~~ll~amvsiq~Gas~Ak~LFP~v--G~~g~t~lRl~~aaLIll~l~R---Pwr------~r~~~~~~~~~~~yGvsLg 82 (292)
T COG5006 14 ILALLVAMVSIQSGASFAKSLFPLV--GAAGVTALRLAIAALILLALFR---PWR------RRLSKPQRLALLAYGVSLG 82 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccc--ChhhHHHHHHHHHHHHHHHHhh---HHH------hccChhhhHHHHHHHHHHH
Confidence 4555666665555555667777765 4666667776677777766432 222 1245567777777777777
Q ss_pred HHHHHHHHHhhc-----------cCchhhhhhhch--hH---HHHHHHHHHh---cCCcccccchhhhHHhhhhhhH
Q psy5010 101 AIGYVTTLQIKI-----------TSPLTHNISGTA--KA---CAQTVIASYW---YNEVKPFLWWVSNWVVLFGSAA 158 (178)
Q Consensus 101 ~~~~~~~~~i~~-----------~~~~~~sv~~~l--~~---v~~~i~g~~~---f~e~~t~~~~iG~~lil~g~~l 158 (178)
..|+++|..+++ +||.-++..+.= ++ +.-.++|..+ .++......-+|....+....+
T Consensus 83 ~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~ 159 (292)
T COG5006 83 GMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSSRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGAC 159 (292)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccHHHHHHHhccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHH
Confidence 788888887655 556666665532 22 2233444444 3444555666787777766644
No 150
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=25.89 E-value=2.2e+02 Score=19.30 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHH
Q psy5010 25 VIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGY 104 (178)
Q Consensus 25 l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 104 (178)
+.+.+...++.-+.+...+..+..|+.+.. .|..++.++-.+.....+.. .......+...+..|++|..-++
T Consensus 6 lgg~~Ga~~R~~l~~~~~~~~~~~p~gt~~-vN~~g~fllG~~~~~~~~~~------~~~~~~~~~~~l~~Gf~G~lTTf 78 (117)
T PF02537_consen 6 LGGALGALLRYGLSKLLNRRWGWFPWGTLL-VNVLGCFLLGLLAGLLAKKL------ASKWSPSLRLFLGTGFCGGLTTF 78 (117)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCchHHHH-HHHHHHHHHHHHHHHHHHhc------cccCCHHHHHHHHHHHcchHHHH
Confidence 344444445554544443333334665544 55556555544433221100 00122344456788888888888
Q ss_pred HHHH
Q psy5010 105 VTTL 108 (178)
Q Consensus 105 ~~~~ 108 (178)
+++.
T Consensus 79 St~~ 82 (117)
T PF02537_consen 79 STFI 82 (117)
T ss_pred HHHH
Confidence 8764
No 151
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=25.76 E-value=2.4e+02 Score=19.80 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHH-HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 93 PIGGLCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 93 ~~~gv~~~~~~~~~-~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
-..|++|+++.... |..+...+....+ .++--++.-+. .+..|+++.+.+..+|++.+++.++
T Consensus 66 P~lGLlGTv~Gmi~~f~~l~~~~~~~~~-------~l~~gi~~Al~------tT~~GL~vai~~~~~~~~l~~~~~~ 129 (139)
T PF01618_consen 66 PLLGLLGTVIGMIEAFQALAETGSGDPS-------QLAGGISVALI------TTAYGLVVAIPALPFYNYLKRRVER 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCHH-------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888654 3455543331111 11111111111 4566777777777777776665444
No 152
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=25.49 E-value=4.3e+02 Score=22.58 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPC 44 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~ 44 (178)
+..........+++.+...+..+...++
T Consensus 279 ~i~~l~~~~~~gi~~a~~~lvgq~~Ga~ 306 (464)
T PRK00187 279 QIVSVAFMVPVGLSYAVTMRVGQHYGAG 306 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455667777788888888888887654
No 153
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=25.18 E-value=1.1e+02 Score=17.18 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5010 20 GTVYGVIASASLALYSIHT 38 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~ 38 (178)
=++..++.+.+|++|+|..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 3567788999999999864
No 154
>PLN02776 prenyltransferase
Probab=25.17 E-value=4.1e+02 Score=22.23 Aligned_cols=37 Identities=8% Similarity=-0.069 Sum_probs=27.9
Q ss_pred HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCccccc
Q psy5010 107 TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFL 144 (178)
Q Consensus 107 ~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~ 144 (178)
|-..|+.++..+ ++|..--....+.||.--.+++++.
T Consensus 116 Yt~lKR~t~~~~-~lG~~~Ga~ppL~Gw~Avtg~~~~~ 152 (341)
T PLN02776 116 YTPLKQIHPANT-WVGAVVGAIPPLMGWAAASGQLDAG 152 (341)
T ss_pred HHhHccCCchhH-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334888888875 7787777778888988877777654
No 155
>PF15102 TMEM154: TMEM154 protein family
Probab=25.16 E-value=16 Score=26.60 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=8.0
Q ss_pred HHhhhhhhHHHHHhHHHH
Q psy5010 150 WVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 150 ~lil~g~~l~~~~k~~~~ 167 (178)
++++..+++..+.|+++.
T Consensus 70 lLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHheeEEeeccc
Confidence 344444555444433333
No 156
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=25.13 E-value=2.2e+02 Score=27.28 Aligned_cols=65 Identities=11% Similarity=-0.053 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHH-HHHhhccCchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhh
Q psy5010 92 LPIGGLCGFAIGYVT-TLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGS 156 (178)
Q Consensus 92 l~~~gv~~~~~~~~~-~~~i~~~~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~ 156 (178)
+.-.++.|.++.... +..++...++-...++..-.+..+++...++|-++|..++.|+++.++=+
T Consensus 333 l~~~~~~g~~lv~~vl~lfl~~~r~~liv~~~IPisi~~t~~~m~~~g~slN~~SL~gl~laiG~l 398 (1021)
T PF00873_consen 333 LISNLLIGIILVVLVLLLFLRNWRSALIVALSIPISILGTFIFMYLFGISLNIMSLAGLILAIGML 398 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhcccc
Confidence 334444444444322 23344333333333334444666777788899999999999987776643
No 157
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=24.71 E-value=72 Score=20.82 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=7.9
Q ss_pred cchhhhHHhhhhhhH
Q psy5010 144 LWWVSNWVVLFGSAA 158 (178)
Q Consensus 144 ~~~iG~~lil~g~~l 158 (178)
...+|+.+.+.|.++
T Consensus 5 ~Fl~~l~lliig~~~ 19 (92)
T PF13038_consen 5 LFLVGLILLIIGGFL 19 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 158
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.61 E-value=1.8e+02 Score=22.66 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHHhhhccC
Q psy5010 127 CAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQYNNKY 175 (178)
Q Consensus 127 v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~~~~~~~ 175 (178)
+.-++++++++ +=..+.+.-|.+-++-.+-+|.++..++|
T Consensus 132 IClIIIAVLfL---------ICT~LfLSTVVLANKVS~LKrskQ~gKRq 171 (227)
T PF05399_consen 132 ICLIIIAVLFL---------ICTLLFLSTVVLANKVSSLKRSKQVGKRQ 171 (227)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34455555543 44456666666666665544444433333
No 159
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=24.40 E-value=1.6e+02 Score=23.69 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=15.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHcC
Q psy5010 49 IWLLSYYNNVYSSIILLFVSGLFG 72 (178)
Q Consensus 49 ~~~~~~~~~~~a~~~l~~~~~~~~ 72 (178)
.+...+..|+++.++...+....+
T Consensus 110 ~w~~v~lgNliGa~~~a~l~~~~g 133 (265)
T COG2116 110 NWLVVYLGNLIGALFVALLFHLSG 133 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455566678888887766665554
No 160
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.32 E-value=70 Score=22.54 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=4.5
Q ss_pred hHHHHHhHHHHHH
Q psy5010 157 AAYTFVKQREMEA 169 (178)
Q Consensus 157 ~l~~~~k~~~~~~ 169 (178)
+.|...|++||..
T Consensus 84 i~y~irR~~Kk~~ 96 (122)
T PF01102_consen 84 ISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHS----
T ss_pred HHHHHHHHhccCC
Confidence 3455555544443
No 161
>KOG1583|consensus
Probab=24.08 E-value=41 Score=27.48 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHH
Q psy5010 125 KACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 125 ~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~ 169 (178)
.++..+++||++.+.+-+..|+...+++-.|.+.-++.+.++-+.
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 567889999999999999999999999999998888877665554
No 162
>KOG1630|consensus
Probab=23.96 E-value=3.9e+02 Score=21.58 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHH
Q psy5010 59 YSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTT 107 (178)
Q Consensus 59 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~ 107 (178)
.+....+......|....-.++++...+.-+.|++=+|++|-+++=..|
T Consensus 152 va~~~tla~mi~sG~larsi~Yq~g~gaKhLAW~lHc~vlGAV~APlc~ 200 (336)
T KOG1630|consen 152 VAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWLLHCGVLGAVVAPLCF 200 (336)
T ss_pred HHHHHHHHHHHhcchhhhcccCCCCccHHHHHHHHHHHHHHHHHhhHHh
Confidence 3344444444444443322333333344555566777887776664433
No 163
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=23.91 E-value=60 Score=20.93 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=14.5
Q ss_pred chhhhHHhhhhhhHHHHH-hHHHHHHhhhccC
Q psy5010 145 WWVSNWVVLFGSAAYTFV-KQREMEAQYNNKY 175 (178)
Q Consensus 145 ~~iG~~lil~g~~l~~~~-k~~~~~~~~~~~~ 175 (178)
...|.++...|+....-. =+|+||+++.|+|
T Consensus 43 fl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~pR 74 (77)
T PF11118_consen 43 FLAGLLLFAIGVGFIAGFILHRDRKRNKVQPR 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhHhheeeccccccchh
Confidence 455555555555332111 1455555555544
No 164
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=23.90 E-value=3.9e+02 Score=21.53 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeEeccccCCCccccHHHHHHHHHHHHHHHHHHHH
Q psy5010 3 FWLGVDQEDLAGSFSISGTVYGVIASASLALYSIH 37 (178)
Q Consensus 3 ~~~gv~~~~~~~~~~~~G~~~~l~s~~~~a~~~i~ 37 (178)
+++|.+.+.++.++|+.=.++.++++++.-...-.
T Consensus 12 v~lG~ala~~~~~f~~~~~ll~~~~~~~~q~~~N~ 46 (284)
T TIGR00751 12 IVAGTALAAWLHAFVWLVALLALATAVLLQILSNY 46 (284)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 45677777565689988777777776554433333
No 165
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=23.60 E-value=4.6e+02 Score=22.25 Aligned_cols=28 Identities=7% Similarity=-0.161 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5010 17 SISGTVYGVIASASLALYSIHTKKVLPC 44 (178)
Q Consensus 17 ~~~G~~~~l~s~~~~a~~~i~~kk~~~~ 44 (178)
+.....+....++..+...+..+...++
T Consensus 278 ~i~~~~~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 278 YLMVLYYLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 4556667777778888888888877654
No 166
>PRK11562 nitrite transporter NirC; Provisional
Probab=22.93 E-value=28 Score=28.02 Aligned_cols=27 Identities=15% Similarity=-0.164 Sum_probs=18.5
Q ss_pred cccccchhhhHHhhhhhhHHHHHhHHH
Q psy5010 140 VKPFLWWVSNWVVLFGSAAYTFVKQRE 166 (178)
Q Consensus 140 ~~t~~~~iG~~lil~g~~l~~~~k~~~ 166 (178)
|.+..+++|..+.++..+.|...++++
T Consensus 228 pvtLGNivGG~v~vg~~y~~~~~~~~~ 254 (268)
T PRK11562 228 WVTLGNTLSGAVFMGLGYWYATPKANR 254 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 455667888887777777777655443
No 167
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=22.65 E-value=1.3e+02 Score=27.97 Aligned_cols=42 Identities=10% Similarity=-0.293 Sum_probs=29.8
Q ss_pred chhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhh
Q psy5010 115 PLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGS 156 (178)
Q Consensus 115 ~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~ 156 (178)
+.-.+++...-+++.++....++|-++|...+.|+.++++=.
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l~siaglil~iGi~ 331 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMA 331 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHH
Confidence 444455555566677777777899999999999887665433
No 168
>PF14184 YrvL: Regulatory protein YrvL
Probab=22.08 E-value=3e+02 Score=19.57 Aligned_cols=54 Identities=13% Similarity=-0.083 Sum_probs=28.5
Q ss_pred CchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHH
Q psy5010 114 SPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREM 167 (178)
Q Consensus 114 ~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~ 167 (178)
+.......-..-....+.+++..-||-+..-++=-...++.+...+...+--++
T Consensus 73 ~~~~~~~l~~~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~~~~~~~~~~ 126 (132)
T PF14184_consen 73 SRRLFILLAFIIDFLFTWITIYTADELMESISISTLSEIIFALLFALLDKCFDK 126 (132)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHHHHHHHHhcc
Confidence 333333333334455566666666665555554444555556655665554444
No 169
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.73 E-value=3.5e+02 Score=20.29 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcCChHHHh
Q psy5010 23 YGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQ 78 (178)
Q Consensus 23 ~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 78 (178)
.+++|..+.=+|..+.||. + +++.=..|....=+++...+-+..+..+++.
T Consensus 77 ~gv~Si~aAllY~~~l~k~-~----g~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~ 127 (173)
T PF11085_consen 77 IGVFSIVAALLYYALLKKF-K----GPWPGILYGLAWWAIVFFVLNPIFPMIKPVT 127 (173)
T ss_pred HHHHHHHHHHHHHHHHHHh-c----ccchHHHHHHHHHHHHHHHhcccccCChhhh
Confidence 3445555556777888885 3 3555555554443333444444444444443
No 170
>MTH00021 ND6 NADH dehydrogenase subunit 6; Validated
Probab=21.72 E-value=3.6e+02 Score=20.32 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcC
Q psy5010 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFG 72 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 72 (178)
-..++.+.+-++.|...+...--. .--.++.-|...++.++++..++...
T Consensus 21 ~sal~Li~~f~~~A~l~~lLga~F----la~iqIlVYvGAI~VLflFvIMll~~ 70 (188)
T MTH00021 21 HSIFWLVVVFVNSAVFFILLGLDF----LALMFLIIYVGAIAILFLFVIMLLNL 70 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHhHHHHHHHHHHHHcCc
Confidence 355555555566555444433211 23568888888888888888887653
No 171
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=21.62 E-value=1e+02 Score=17.45 Aligned_cols=28 Identities=4% Similarity=-0.005 Sum_probs=15.0
Q ss_pred cCCcccccchhhhHHhhh-hhhHHHHHhH
Q psy5010 137 YNEVKPFLWWVSNWVVLF-GSAAYTFVKQ 164 (178)
Q Consensus 137 f~e~~t~~~~iG~~lil~-g~~l~~~~k~ 164 (178)
|++++...+.+.++.+++ +++++.+..+
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~ 35 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIR 35 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776676666554433 3344444433
No 172
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=21.13 E-value=3.9e+02 Score=20.52 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHH-HHHhhcc-CchhhhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHhHHHHHH
Q psy5010 93 PIGGLCGFAIGYVT-TLQIKIT-SPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 93 ~~~gv~~~~~~~~~-~~~i~~~-~~~~~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k~~~~~~ 169 (178)
-+.|++|++.++.. |..+... +....+. ....+...++ .+..|+++.+-+++.|++.+.+-++.
T Consensus 133 PllGLLGTV~Gmi~aF~~i~~~~g~~~~~~--la~GI~~ALi-----------tTa~GL~vAIPali~yn~f~~~i~~~ 198 (215)
T TIGR02796 133 PFIGLFGTVWGIMHSFQAIGGSKNQATLAV--VAPGIAEALI-----------ATAIGLFAAIPAVIAYNKLSTQVNKI 198 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCHHH--HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999888654 5556541 2111111 0111222211 35667788889999999988775553
No 173
>PRK14222 camphor resistance protein CrcB; Provisional
Probab=20.79 E-value=3e+02 Score=19.13 Aligned_cols=52 Identities=10% Similarity=-0.129 Sum_probs=27.3
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHHH
Q psy5010 48 EIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTL 108 (178)
Q Consensus 48 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~ 108 (178)
-|+.+ ...|..++.++-.+.-...+.. ...+.+...+..|++|-.-.|++|.
T Consensus 33 fP~gT-l~vN~~GsfllG~~~~~~~~~~--------~~~~~~~~~l~tGf~GgfTTFSTf~ 84 (124)
T PRK14222 33 FPYGT-LAVNVIGAFLIGLIMEFSLRST--------LIPPTLRIGLTIGFLGGLTTFSTFS 84 (124)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHcccchhHHHHH
Confidence 36654 4466666666543332211100 1122344566788888877777763
No 174
>PRK14195 camphor resistance protein CrcB; Provisional
Probab=20.58 E-value=3.1e+02 Score=19.14 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=26.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHHH
Q psy5010 49 IWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTL 108 (178)
Q Consensus 49 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~ 108 (178)
|+.+ ...|..++.++-.+.....+.. ..++.+...+..|++|-.-.|++|.
T Consensus 34 P~gT-l~vNi~GsfllG~~~~~~~~~~--------~~~~~~~~~l~tGf~GgfTTFSTf~ 84 (125)
T PRK14195 34 PWGT-LAVNVTGSFLIGVLAGLLAHRW--------NASQEWRLFLIVGVLGGFTTFSAFS 84 (125)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHhcc--------CCCHHHHHHHHhHhccCcccHHHHH
Confidence 6665 4466666665544332221110 1122344456788888777777763
No 175
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=20.51 E-value=4.2e+02 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.311 Sum_probs=22.4
Q ss_pred chhhhhhhchhHHHHHHHHHHhcCCc--ccccchhhhH
Q psy5010 115 PLTHNISGTAKACAQTVIASYWYNEV--KPFLWWVSNW 150 (178)
Q Consensus 115 ~~~~sv~~~l~~v~~~i~g~~~f~e~--~t~~~~iG~~ 150 (178)
|.+.+++++.-.....++-.+.||+. .++.+++-..
T Consensus 212 ~l~~tivsY~isl~vsl~~L~~f~~~~~~~~~~~l~at 249 (267)
T PF09622_consen 212 FLRFTIVSYLISLLVSLLMLWFFGRLDGDPWSQWLKAT 249 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 66777888877766555555667663 3455666543
No 176
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=20.33 E-value=1.4e+02 Score=16.19 Aligned_cols=17 Identities=6% Similarity=0.047 Sum_probs=9.4
Q ss_pred hhHHHHHhHHHHHHhhh
Q psy5010 156 SAAYTFVKQREMEAQYN 172 (178)
Q Consensus 156 ~~l~~~~k~~~~~~~~~ 172 (178)
.+++.+.|..++++.+.
T Consensus 13 ~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 13 LLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666655555443
No 177
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=20.00 E-value=3.3e+02 Score=19.30 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=27.5
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHcCChHHHhcccccccchhhhHhhhhHHHHHHHHHHHHH
Q psy5010 48 EIWLLSYYNNVYSSIILLFVSGLFGELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTL 108 (178)
Q Consensus 48 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~ 108 (178)
.|+.+. -.|..++.++-.+.....+.. ..+..+-..+..|++|-.-+|++|.
T Consensus 39 fP~gTl-~VNv~GsfllG~l~~~~~~~~--------~~~~~~~~~l~tGflGgfTTFSTf~ 90 (133)
T PRK14218 39 FPWGTL-AVNLIGSFVAGFLLIWLDKRG--------SAGWPWRMLLIVGLIGGLTTFSSLM 90 (133)
T ss_pred CcHHHH-HHHHHHHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHhchhccHHHHH
Confidence 467654 455666665544332221110 1122344566788888777777763
Done!