Query psy5010
Match_columns 178
No_of_seqs 111 out of 1021
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:33:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 4.8E-09 1.6E-13 74.7 5.6 70 94-163 34-105 (137)
2 3b5d_A Multidrug transporter E 98.4 5.5E-07 1.9E-11 61.6 5.9 68 95-162 35-104 (110)
3 3l1l_A Arginine/agmatine antip 55.3 29 0.001 27.8 6.5 25 144-168 409-433 (445)
4 3zux_A Transporter, ASBTNM; tr 43.2 1.2E+02 0.004 23.8 9.8 53 116-168 260-316 (332)
5 1s4x_A Integrin beta-3; cell a 24.7 46 0.0016 20.0 2.1 21 145-165 10-30 (67)
6 3rko_J NADH-quinone oxidoreduc 23.9 2E+02 0.0067 20.7 5.8 49 20-72 28-76 (184)
7 3bxl_B CAM, voltage-dependent 23.4 73 0.0025 15.3 2.3 18 157-174 7-24 (26)
8 3mkt_A Multi antimicrobial ext 20.1 3.2E+02 0.011 21.4 9.4 25 18-42 282-306 (460)
9 2jwa_A Receptor tyrosine-prote 17.5 52 0.0018 18.0 1.1 27 146-172 18-44 (44)
10 1v54_M VIIIB, IX, cytochrome C 13.8 1.1E+02 0.0036 16.9 1.8 33 138-170 7-46 (46)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.82 E-value=4.8e-09 Score=74.71 Aligned_cols=70 Identities=3% Similarity=0.035 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHH-HHhhccCchhhhhh-hchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHHh
Q psy5010 94 IGGLCGFAIGYVTT-LQIKITSPLTHNIS-GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFVK 163 (178)
Q Consensus 94 ~~gv~~~~~~~~~~-~~i~~~~~~~~sv~-~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~k 163 (178)
..+++++++.+..+ ..+++.++.+...+ ..+.|++++++|+++|||++|+.+++|+++++.|+++.+..+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34556666666655 67899888877776 899999999999999999999999999999999999887644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.39 E-value=5.5e-07 Score=61.62 Aligned_cols=68 Identities=3% Similarity=0.021 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHH-HHhhccCchhhhhh-hchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHHHHH
Q psy5010 95 GGLCGFAIGYVTT-LQIKITSPLTHNIS-GTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAYTFV 162 (178)
Q Consensus 95 ~gv~~~~~~~~~~-~~i~~~~~~~~sv~-~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~~~~ 162 (178)
.++.+....+..+ ..+|+.+..+...+ ..+.|+.++++|+++|||++|+.+++|+.+++.|+.+.+..
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555544 57788776666555 78999999999999999999999999999999999887653
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=55.29 E-value=29 Score=27.77 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=17.4
Q ss_pred cchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 144 LWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 144 ~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
..+.|....+.|..+|-+.++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3556778888888888776655444
No 4
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=43.22 E-value=1.2e+02 Score=23.81 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=24.3
Q ss_pred hhhhh-hhchhHHHHHHHHHHhcCCccc---ccchhhhHHhhhhhhHHHHHhHHHHH
Q psy5010 116 LTHNI-SGTAKACAQTVIASYWYNEVKP---FLWWVSNWVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 116 ~~~sv-~~~l~~v~~~i~g~~~f~e~~t---~~~~iG~~lil~g~~l~~~~k~~~~~ 168 (178)
.+.+. .+.=|.-.++.++...|+++.. +.-+.+..-.+.|..+..+.++++++
T Consensus 260 ~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~ 316 (332)
T 3zux_A 260 KALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGK 316 (332)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34444 3444445777777778854221 11222233344555555554444433
No 5
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=24.66 E-value=46 Score=19.97 Aligned_cols=21 Identities=5% Similarity=-0.425 Sum_probs=4.4
Q ss_pred chhhhHHhhhhhhHHHHHhHH
Q psy5010 145 WWVSNWVVLFGSAAYTFVKQR 165 (178)
Q Consensus 145 ~~iG~~lil~g~~l~~~~k~~ 165 (178)
+++|+++.++--++.....+|
T Consensus 10 ~liGl~lLliwKll~~i~Drr 30 (67)
T 1s4x_A 10 SSGLVPRGSHMKLLITIHDRK 30 (67)
T ss_dssp -----------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHH
Confidence 567776666665554443333
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=23.92 E-value=2e+02 Score=20.72 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHhHHHHHHHHHHHHHcC
Q psy5010 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFG 72 (178)
Q Consensus 20 G~~~~l~s~~~~a~~~i~~kk~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 72 (178)
..++.+.+-++.|...+...- +. ..-.++.-|...+...+++.+++...
T Consensus 28 s~l~Li~~f~~~a~l~~ll~a---~F-la~~qilVYvGAi~VLflFvvMl~~~ 76 (184)
T 3rko_J 28 ALLYLIISLLAISGVFFSLGA---YF-AGALEIIVYAGAIMVLFVFVVMMLNL 76 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhCh---HH-HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444555555555554444332 11 23467788888888888888887763
No 7
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=23.42 E-value=73 Score=15.28 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=9.9
Q ss_pred hHHHHHhHHHHHHhhhcc
Q psy5010 157 AAYTFVKQREMEAQYNNK 174 (178)
Q Consensus 157 ~l~~~~k~~~~~~~~~~~ 174 (178)
.++-+.|..++++++.++
T Consensus 7 mI~e~yrq~K~~r~q~~~ 24 (26)
T 3bxl_B 7 MIMDYYKQSKVKKQRXXX 24 (26)
T ss_pred HHHHHHHHHHhhhhhccc
Confidence 445666665555555443
No 8
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=20.08 E-value=3.2e+02 Score=21.37 Aligned_cols=25 Identities=20% Similarity=0.014 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5010 18 ISGTVYGVIASASLALYSIHTKKVL 42 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~~i~~kk~~ 42 (178)
.......+..+++.+......+...
T Consensus 282 i~~~~~~~~~~~~~a~~p~i~~~~g 306 (460)
T 3mkt_A 282 FSSLVFMFPMSIGAAVSIRVGHKLG 306 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666777788888887777654
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.47 E-value=52 Score=18.02 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhhhHHhhhhhhHHHHHhHHHHHHhhh
Q psy5010 146 WVSNWVVLFGSAAYTFVKQREMEAQYN 172 (178)
Q Consensus 146 ~iG~~lil~g~~l~~~~k~~~~~~~~~ 172 (178)
.+|..+.+......-...+|++.++.+
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHHHHhheehhhhhccC
No 10
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=13.85 E-value=1.1e+02 Score=16.94 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CCccccc-chhhhHHhhhhh------hHHHHHhHHHHHHh
Q psy5010 138 NEVKPFL-WWVSNWVVLFGS------AAYTFVKQREMEAQ 170 (178)
Q Consensus 138 ~e~~t~~-~~iG~~lil~g~------~l~~~~k~~~~~~~ 170 (178)
.++++.. +.+|+..++.+. ++.....+|++.+.
T Consensus 7 ~~~~s~~E~aigl~v~f~~~L~PagWVLshL~~YKk~e~~ 46 (46)
T 1v54_M 7 KTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKSSAA 46 (46)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccC
Done!