Query psy5010
Match_columns 178
No_of_seqs 111 out of 1021
Neff 8.6
Searched_HMMs 13730
Date Fri Aug 16 23:33:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 30.6 74 0.0054 21.5 8.5 31 127-157 95-125 (222)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 22.4 1.2E+02 0.009 21.3 13.9 21 152-172 421-441 (447)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 20.7 16 0.0011 22.0 1.0 22 148-169 38-59 (100)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 20.6 1.1E+02 0.0081 20.1 7.7 42 118-159 68-109 (199)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 17.9 46 0.0034 14.6 2.9 19 19-37 3-21 (27)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 8.5 24 0.0018 20.7 -0.8 20 150-169 29-48 (91)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.4 59 0.0043 19.5 0.7 19 150-168 46-64 (107)
8 d1pv7a_ f.38.1.2 (A:) Lactose 6.6 3.5E+02 0.026 17.9 6.8 7 130-136 367-373 (417)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 5.7 1.8E+02 0.013 13.6 2.8 17 18-34 18-34 (37)
10 d2h5na1 a.287.1.2 (A:1-132) Hy 5.2 1.3E+02 0.0097 17.7 1.4 25 5-30 91-116 (132)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=30.58 E-value=74 Score=21.51 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCcccccchhhhHHhhhhhh
Q psy5010 127 CAQTVIASYWYNEVKPFLWWVSNWVVLFGSA 157 (178)
Q Consensus 127 v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~ 157 (178)
+..++.+..+.+.+++....+|.++.++...
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 4566778888999999999999877665553
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.42 E-value=1.2e+02 Score=21.32 Aligned_cols=21 Identities=5% Similarity=-0.129 Sum_probs=8.5
Q ss_pred hhhhhhHHHHHhHHHHHHhhh
Q psy5010 152 VLFGSAAYTFVKQREMEAQYN 172 (178)
Q Consensus 152 il~g~~l~~~~k~~~~~~~~~ 172 (178)
++..++++...+.++||+|+.
T Consensus 421 ~~~~~~~~~~~~~~~~r~~~~ 441 (447)
T d1pw4a_ 421 ILAVILLIVVMIGEKRRHEQL 441 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHH
Confidence 333334444444444444333
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.66 E-value=16 Score=21.98 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=13.5
Q ss_pred hhHHhhhhhhHHHHHhHHHHHH
Q psy5010 148 SNWVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 148 G~~lil~g~~l~~~~k~~~~~~ 169 (178)
++.+.+.+...|...|+|+++.
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHhhhhhccCC
Confidence 3345566667777777665553
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=20.64 E-value=1.1e+02 Score=20.12 Aligned_cols=42 Identities=5% Similarity=-0.277 Sum_probs=27.2
Q ss_pred hhhhhchhHHHHHHHHHHhcCCcccccchhhhHHhhhhhhHH
Q psy5010 118 HNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVVLFGSAAY 159 (178)
Q Consensus 118 ~sv~~~l~~v~~~i~g~~~f~e~~t~~~~iG~~lil~g~~l~ 159 (178)
.......-.+..+.....+++.+++.....+..+.++...-+
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 333333444555556677788899988888877777666433
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.85 E-value=46 Score=14.58 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5010 19 SGTVYGVIASASLALYSIH 37 (178)
Q Consensus 19 ~G~~~~l~s~~~~a~~~i~ 37 (178)
+|.+.+-++.+.+|.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5788888888888887643
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.46 E-value=24 Score=20.73 Aligned_cols=20 Identities=15% Similarity=-0.174 Sum_probs=12.9
Q ss_pred HHhhhhhhHHHHHhHHHHHH
Q psy5010 150 WVVLFGSAAYTFVKQREMEA 169 (178)
Q Consensus 150 ~lil~g~~l~~~~k~~~~~~ 169 (178)
.+.+.|.+.|...|+|+++.
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHhhheeeeccCC
Confidence 34566667777777776553
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.42 E-value=59 Score=19.46 Aligned_cols=19 Identities=5% Similarity=-0.101 Sum_probs=10.2
Q ss_pred HHhhhhhhHHHHHhHHHHH
Q psy5010 150 WVVLFGSAAYTFVKQREME 168 (178)
Q Consensus 150 ~lil~g~~l~~~~k~~~~~ 168 (178)
.+.+.|...|...|.|+++
T Consensus 46 ~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 46 TIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHhhhhhccC
Confidence 3445556666666655443
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.65 E-value=3.5e+02 Score=17.92 Aligned_cols=7 Identities=0% Similarity=0.301 Sum_probs=3.2
Q ss_pred HHHHHHh
Q psy5010 130 TVIASYW 136 (178)
Q Consensus 130 ~i~g~~~ 136 (178)
.+.|++.
T Consensus 367 ~~~G~l~ 373 (417)
T d1pv7a_ 367 VLAGNMY 373 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.68 E-value=1.8e+02 Score=13.62 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5010 18 ISGTVYGVIASASLALY 34 (178)
Q Consensus 18 ~~G~~~~l~s~~~~a~~ 34 (178)
.+|.++.+.-++.++-|
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777777766665
No 10
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=5.18 E-value=1.3e+02 Score=17.68 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=11.6
Q ss_pred EeccccCC-CccccHHHHHHHHHHHHH
Q psy5010 5 LGVDQEDL-AGSFSISGTVYGVIASAS 30 (178)
Q Consensus 5 ~gv~~~~~-~~~~~~~G~~~~l~s~~~ 30 (178)
+||.+++. |.+-|-+ .+|-+++.+|
T Consensus 91 lgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 91 LGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred hhheeccCCCCCccHh-HHHHHHHHHh
Confidence 46666664 4332222 2355555444
Done!