RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5010
(178 letters)
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 40.2 bits (95), Expect = 1e-04
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 20 GTVYGVIASASLALYSIHTKKVLPCVNNEIWLLS-----YYNNVYSSIILLFVSGLFGEL 74
G + + ASA AL I ++K+L + L+ YY + + I+LL
Sbjct: 1 GFILALAASALFALRLILSQKLL--KKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGF 58
Query: 75 KTVQDYADLNTA----YFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQT 130
K + + L L + G+ F + TSPLT +++GT K
Sbjct: 59 KLGKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVI 118
Query: 131 VIASYWYNEVKPFLWWVSNWVVLFGSAAY 159
V++ + + FL + + + G Y
Sbjct: 119 VLSVIIFGDPVTFLNILGLAIAILGVVLY 147
>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport
and metabolism / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 309
Score = 37.9 bits (88), Expect = 0.001
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 19 SGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSIILLFVSGLFGELKTVQ 78
G ++ S A + + +K + N + + +YNN+ S ILL S LF +
Sbjct: 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN 214
Query: 79 DYADL-NTAYFWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWY 137
+L + +F I GLC I Y + +++TS T+++ G + ++
Sbjct: 215 LANNLSVDSLMAMF--ISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFF 272
Query: 138 NEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQ 170
+ FL S + A Y K ++ + Q
Sbjct: 273 DAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305
>gnl|CDD|206355 pfam14187, DUF4310, Domain of unknown function (DUF4310). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 214 and 231 amino
acids in length.
Length = 210
Score = 28.1 bits (63), Expect = 2.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 88 FWLFLPIGGLCGFAIGYVTTLQIKITSPLTHNISGT 123
F L L G + G IGY+ L K T +++ G
Sbjct: 111 FALSLLTGAVLGLIIGYIIILIRKFTINQSNSTFGA 146
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 28.3 bits (63), Expect = 2.5
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 94 IGGLCGFAIGYVTTLQIKITSPLT----HNISGTAKACAQTVIASYWYNEVKPFLWWVSN 149
+G L G A+G L I + P T + + A A + W V P L
Sbjct: 214 VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLG---- 269
Query: 150 WVVLFGSAAYTFVKQREMEAQYNNK 174
L G+ YT VK RE +
Sbjct: 270 --ALAGAGTYTAVKLREEDGDPPRP 292
>gnl|CDD|237883 PRK14991, PRK14991, tetrathionate reductase subunit A; Provisional.
Length = 1031
Score = 28.0 bits (63), Expect = 3.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 92 LPIGGLCGFAIGYVTTLQIKITSPLTHNISGTA 124
L GGL FA GY T + + L + SG
Sbjct: 13 LAAGGLAAFAAGYSDTAK-RAAKGLLNGTSGKP 44
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel. This
family of ion channels contains 10 or 12 transmembrane
helices. Each protein forms a single pore. It has been
shown that some members of this family form homodimers.
In terms of primary structure, they are unrelated to
known cation channels or other types of anion channels.
Three ClC subfamilies are found in animals. ClC-1 is
involved in setting and restoring the resting membrane
potential of skeletal muscle, while other channels play
important parts in solute concentration mechanisms in
the kidney. These proteins contain two pfam00571
domains.
Length = 345
Score = 27.5 bits (62), Expect = 4.2
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 10 EDLAGSFSISGTVYGVIASA-----SLALYSIHTK-KVLPCVNNEIWLLSYYNNVYSSII 63
E+L+ SFS + ++AS S L+ +V + L + I+
Sbjct: 113 EELSRSFSYRALLPVLVASVVAALVSRLLFGNEPLFEVPSLPPLSLLELPLF------IL 166
Query: 64 LLFVSGLFGEL------KTVQDYADLNTAYFWLFLPIGGLCGFAIGYVT 106
L + GL G L K + + L L +GGL +G
Sbjct: 167 LGILCGLLGALFVRLLLKVERLFRRLKKLPPILRPALGGLLVGLLGLFL 215
>gnl|CDD|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily.
This eukaryotic subfamily belongs to the Thermotoga
maritima CorA (TmCorA)-family of the MIT superfamily of
essential membrane proteins involved in transporting
divalent cations (uptake or efflux) across membranes.
This subfamily includes three Saccharomyces cerevisiae
members: two plasma membrane proteins, the Mg2+
transporter Alr1p/Swc3p and the putative Mg2+
transporter, Alr2p, and the vacuole membrane protein
Mnr2p, a putative Mg2+ transporter. Thermotoga maritima
CorA forms funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by Alr1p. Natural variants in this signature
sequence may be associated with the transport of
different divalent cations. The functional diversity of
the MIT superfamily may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 305
Score = 26.8 bits (60), Expect = 6.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 61 SIILLFVSGLFGELKTV--QDYADLNTAYFWLFLPIGGLCGFAIGYV 105
+ L ++GLFG V QD L + + + I L + ++
Sbjct: 255 FLPLQLITGLFGMNVKVPGQDIESLYWFFGIVIVAIMVLVAIVVVFL 301
>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 26.8 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 149 NWVVLFGSAAYTFVKQREMEAQYNNKYSRV 178
V+LFG AA T QR E+ Y +Y V
Sbjct: 376 AAVLLFGEAAPTL-AQRLQESGYTGEYEIV 404
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 26.5 bits (59), Expect = 8.8
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 99 GFAIGYVTTLQIKITSPLTHNISGTAKACAQTVIASYWYNEVKPFLWWVSNWVV-----L 153
GFA+G+ LQ I PL + T+ YW ++V P +W +V L
Sbjct: 83 GFAVGWNYWLQWLIVLPLELV------TASMTI--QYWTDKVNPAVWIAIFYVFIVIINL 134
Query: 154 FGSAAY 159
FG Y
Sbjct: 135 FGVKGY 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.436
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,002,132
Number of extensions: 807152
Number of successful extensions: 894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 50
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)