RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5010
         (178 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 33/119 (27%)

Query: 46  NNEIW---LLSYYNNVYSSIILLFVSGLFGELKT-VQDYADLNTAYF-------WL---- 90
           N + +   L   Y   Y  ++   +      L   ++   D    +        WL    
Sbjct: 165 NTDDYFEELRDLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223

Query: 91  ------FL-------PIGGLCGFAIGYVTTLQIKITSP--LTHNISGTAKACAQTVIAS 134
                 +L       P+ G+   A  YV T ++   +P  L   + G     +Q ++ +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLA-HYVVTAKLLGFTPGELRSYLKGAT-GHSQGLVTA 280



 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 34/196 (17%), Positives = 58/196 (29%), Gaps = 66/196 (33%)

Query: 5   LGVDQEDLAGSFS-ISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNVYSSII 63
           LG    +L       +G   G++ + ++A     +           W  S++ +V  +I 
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETD--S-----------WE-SFFVSVRKAIT 301

Query: 64  LLFVSGL-----FG----ELKTVQDYADLNTAYFWLFLPIGGLCGFAIGYVTTLQIKITS 114
           +LF  G+     +         ++D  + N              G              S
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENN-------------EGVP------------S 336

Query: 115 P-LTHNISGTAKACAQTVIASYWYNEVKPFLWWVS--------NWVVLFGSAA--YTFVK 163
           P L  +IS   +   Q  +     N   P    V         N VV  G     Y    
Sbjct: 337 PML--SISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVNGAKNLVVS-GPPQSLYGLNL 391

Query: 164 Q-REMEAQYNNKYSRV 178
             R+ +A      SR+
Sbjct: 392 TLRKAKAPSGLDQSRI 407


>3qb2_A Immunity factor for SPN; glycohydrolase inhibitor, streptococcus
           pyogenes glycohydrol toxin, hydrolase inhibitor; 2.50A
           {Streptococcus pyogenes} PDB: 3pnt_B
          Length = 187

 Score = 25.8 bits (56), Expect = 7.3
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 12  LAGSFSISGTVYGVIASASLALYSIHTKKVLPCVNNEIWLLSYYNNV 58
           + G   +   +   +   S +  ++   + +  +N E  LL+YY ++
Sbjct: 63  IKGYTQLKANIEEALLEMSNSGQALDIYQAVQTLNAENMLLNYYESL 109


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,701,913
Number of extensions: 144886
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 13
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)