RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5010
         (178 letters)



>d1hcna_ g.17.1.4 (A:) Glycoprotein hormones alpha chain
           (Gonadotropin A, Follitropin alpha) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 85

 Score = 26.0 bits (57), Expect = 0.93
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 98  CGFAIGYVTTLQIKITSPLTHNISGTAKAC 127
           C F+  Y T L+ K T  +  N++  +  C
Sbjct: 27  CCFSRAYPTPLRSKKTMLVQKNVTSESTCC 56


>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine
           decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
          Length = 169

 Score = 25.4 bits (55), Expect = 3.9
 Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 4/38 (10%)

Query: 135 YWYNEVKPFLWWVSNWVVLFGSAAYTFVKQREMEAQYN 172
                       V  W++     AYT V      + +N
Sbjct: 112 QIVERYYLPEMQVGEWLLFEDMGAYTVV----GTSSFN 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 671,323
Number of extensions: 28053
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)