BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5015
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 68.9 bits (167), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V +G +++GR+ D II GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
++GY + R+KDMII GGEN+YP EIE I P V E G+PDE+ G E+ +I +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG-EIAAAIVV 460
Query: 77 KENAKLNADDIRTFC 91
+ +++ I +C
Sbjct: 461 ADQNEVSEQQIVEYC 475
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
E GY ++GR KD++I GG N+YPKEIE I P V+E+ GVP GE V
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGV 441
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
DG +VVGRIKD I RGGE I +EIE+ I HP V+ A + DE+ GE+ + +
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK-SCAFIVS 487
Query: 78 ENAKLNADDIR 88
N +L A +R
Sbjct: 488 RNPELKAVVLR 498
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
E GY ++GR D++I GG N+YP EIE I P V+E+ GVP GE V
Sbjct: 388 ERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
E GY ++GR D++I GG N+YP EIE I P V+E+ GVP GE V
Sbjct: 388 ERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
E GY ++GR D++I GG N+YP EIE I P V+E+ GVP GE V
Sbjct: 388 ERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
+G+ C D + +GY V GR KD I RGGE I +EIE + HP V+ A +
Sbjct: 410 NGFYC--SGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSM 467
Query: 62 PDERMGEEVGISIKLKENAKLNADDIRTFCK 92
DE MGE+ + +KE L A +R F +
Sbjct: 468 EDELMGEKSCAYLVVKE--PLRAVQVRRFLR 496
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 18 DGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
DGY GR K++I GGEN+YP E+E ++ HP + +A GVPD + E +
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV 447
Query: 76 LKENAKLNADDIRTF 90
K + AD + F
Sbjct: 448 CKPGESIAADALAEF 462
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +GE + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476
Query: 75 KLKENAKLNADDIRTFCK 92
++ A A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L DGY V GR KD I RGGE + +E+E + HP V +A PD+ +GE + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI 476
Query: 75 KLKENAKLNADDIRTFCK 92
++ A A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
+GY + R KD+II GGENIYP +IE + P + +A G PD+ G+
Sbjct: 388 EGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D + EDGY VGR D+I G + P E+E + HP VLE GVPD G+ +
Sbjct: 458 DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517
Query: 71 GISIKLKEN 79
+I L ++
Sbjct: 518 KATIVLTKD 526
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
+DGY +V R+K +I G + P E+E + HP + +A G+PD GE + L
Sbjct: 463 KDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVL 522
Query: 77 KENAKLNADDIRTFCKGK 94
+E + ++ + G+
Sbjct: 523 EEGKTMTEQEVMDYVAGQ 540
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 11 DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
D V DGY ++VGR D+I GG I EIE + HP V EA G PD +GE
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 70 V 70
+
Sbjct: 448 I 448
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 77 KENAKLNADDI 87
+ + +I
Sbjct: 488 EHGKTMTEKEI 498
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 77 KENAKLNADDI 87
+ + +I
Sbjct: 493 EHGKTMTEKEI 503
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 77 KENAKLNADDI 87
+ + +I
Sbjct: 488 EHGKTMTEKEI 498
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 77 KENAKLNADDI 87
+ + +I
Sbjct: 493 EHGKTMTEKEI 503
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERM 66
DGY V GRIKD+II G NI+P++IE + P + +A A+ E++
Sbjct: 450 DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 500
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 418 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 475
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+ + +V R+K +I G + P E+E + HP++ +A GVPD GE G + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 77 KENAKLNADDIRTFCKGK 94
+ + ++ + +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+ + +V R+K +I G + P E+E + HP++ +A GVPD GE G + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 77 KENAKLNADDIRTFCKGK 94
+ + ++ + +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+ + +V R+K +I G + P E+E + HP++ +A GVPD GE G + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 77 KENAKLNADDIRTFCKGK 94
+ + ++ + +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82
+V R+K++I G + P E+E + HP + +A G+ DE GE + E ++
Sbjct: 429 IVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA 488
Query: 83 NADDIRTF 90
D+I+ +
Sbjct: 489 TEDEIKQY 496
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 81
+V R+K++I G + P E+E + HP++ + + +E GE V +K K+ ++
Sbjct: 476 IVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD-SE 534
Query: 82 LNADDIRTF 90
L+ DD++ F
Sbjct: 535 LSEDDVKQF 543
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE--EVGISI 74
E+G+ R+K++I G I P E+E + H V + G PDE GE + I +
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVL 487
Query: 75 KLKENAKLNADDI 87
K + K++ +DI
Sbjct: 488 KPEYRGKVDEEDI 500
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
+DGY ++GR+ D++ G + EIE I P V E G D+ G+ V + L
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 574
Query: 77 KENA 80
K +
Sbjct: 575 KNKS 578
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
DG + GRI D + G I +EIE+ +Q +P V +A V D + I+ L
Sbjct: 851 DGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV--VADRHESGDASINAYLV 908
Query: 78 ENAKLNADDIRTFCK 92
+L+A+D++ K
Sbjct: 909 NRTQLSAEDVKAHLK 923
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 16 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
R DG + VGR D + G + P E+E + HP V +A A D R+G++ ++
Sbjct: 457 RADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQA-AVLAQDSRLGDKQLVAYV 515
Query: 76 LKENAKLNAD 85
+ E A D
Sbjct: 516 VAERADAPPD 525
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 21 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80
++ GR DM+I G N++P +IEE + P + + + + + + ++++L+ A
Sbjct: 328 AKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387
Query: 81 KLNADD 86
+ D
Sbjct: 388 AASVTD 393
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQTHP 51
V GRIKD+II G+N YP++IE + P
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D++ +G GR DM+ G+ + P E+E + H VLEA GV + +
Sbjct: 412 DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTR 471
Query: 71 GISIKLKENA--KLNADDIRTFCKGK 94
+ +E A ++ A++++ F K +
Sbjct: 472 AFVVLKREFAPSEILAEELKAFVKDR 497
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 31 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 406 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 461
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 31 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 403 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 458
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 31 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 412 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 467
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 22 QVVGRIKDMIIRGGENIYPKEIEE 45
++ GR DM+I G N++P +IEE
Sbjct: 327 KITGRSDDMMIVRGVNVFPTQIEE 350
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 46 FIQTHPNVLEAYAYG---VPDERMGEEVGISIKLKENAKLN 83
F++THPN EA + G VP RMG + + L + K N
Sbjct: 240 FMETHPNPAEAKSDGPNAVPLNRMGALLETLVTLDQAVKRN 280
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 46 FIQTHPNVLEAYAYG---VPDERMGEEVGISIKLKENAK 81
F++THPN EA + G VP RMG + + L + K
Sbjct: 240 FMETHPNPAEAKSDGPNAVPLNRMGALLETLVTLDQAVK 278
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 13 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60
++ ++ +G V+GR+ + I +G + KE I PN L G
Sbjct: 67 YLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRG 114
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 19 GYGQVV-GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
G G VV GR++ II+ GE + I+E ++ +E + + + R GE VG+ ++
Sbjct: 507 GRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLR 564
>pdb|3CLO|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Containing A Luxr Dna Binding Domain (Np_811094.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
Resolution
pdb|3CLO|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Containing A Luxr Dna Binding Domain (Np_811094.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
Resolution
pdb|3CLO|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
Containing A Luxr Dna Binding Domain (Np_811094.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
Resolution
Length = 258
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 35 GENIYPKEIEEFIQTHPNVLEAYAYGVPDE 64
G ++ KEI+E THP EA G+ ++
Sbjct: 1 GXDVLQKEIDEVYATHPTAHEALDNGIVEQ 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.142 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,093,772
Number of Sequences: 62578
Number of extensions: 124862
Number of successful extensions: 464
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 77
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)