Query psy5015
Match_columns 94
No_of_seqs 245 out of 1355
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 23:39:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176|consensus 100.0 1.3E-31 2.8E-36 186.0 10.2 94 1-94 404-497 (537)
2 COG0318 CaiC Acyl-CoA syntheta 99.9 5.5E-26 1.2E-30 158.1 11.7 91 3-93 399-491 (534)
3 PLN03051 acyl-activating enzym 99.9 1.1E-25 2.4E-30 155.0 11.6 90 4-93 356-451 (499)
4 KOG1177|consensus 99.9 4.1E-25 8.9E-30 150.0 10.9 93 2-94 458-552 (596)
5 PRK07529 AMP-binding domain pr 99.9 8.5E-25 1.8E-29 154.4 12.7 92 3-94 443-534 (632)
6 COG0365 Acs Acyl-coenzyme A sy 99.9 3.2E-25 7E-30 153.8 10.1 84 6-91 397-480 (528)
7 PLN02654 acetate-CoA ligase 99.9 1.5E-24 3.2E-29 154.1 12.9 90 4-93 512-604 (666)
8 PRK07868 acyl-CoA synthetase; 99.9 1.8E-24 3.8E-29 159.0 12.1 90 3-93 834-923 (994)
9 TIGR01217 ac_ac_CoA_syn acetoa 99.9 2.2E-24 4.8E-29 152.9 12.1 90 4-93 498-590 (652)
10 PRK07445 O-succinylbenzoic aci 99.9 3.4E-24 7.4E-29 146.6 12.6 90 3-93 322-411 (452)
11 KOG1175|consensus 99.9 1.3E-24 2.9E-29 152.2 9.6 88 4-92 474-561 (626)
12 PTZ00237 acetyl-CoA synthetase 99.9 5.2E-24 1.1E-28 150.9 12.7 75 4-78 491-565 (647)
13 TIGR02316 propion_prpE propion 99.9 3.9E-24 8.3E-29 150.9 11.5 91 3-93 470-568 (628)
14 PRK00174 acetyl-CoA synthetase 99.9 8.6E-24 1.9E-28 149.1 13.2 91 3-93 481-574 (637)
15 PRK07788 acyl-CoA synthetase; 99.9 6.4E-24 1.4E-28 147.4 11.5 91 4-94 426-516 (549)
16 TIGR02188 Ac_CoA_lig_AcsA acet 99.9 1E-23 2.2E-28 148.5 12.6 90 4-93 474-566 (625)
17 PLN02574 4-coumarate--CoA liga 99.9 6.4E-24 1.4E-28 147.9 11.5 92 2-93 427-518 (560)
18 PLN02860 o-succinylbenzoate-Co 99.9 9.8E-24 2.1E-28 147.1 12.3 92 2-93 411-516 (563)
19 PRK03584 acetoacetyl-CoA synth 99.9 1.1E-23 2.4E-28 149.1 12.4 90 4-93 497-589 (655)
20 PRK07824 O-succinylbenzoic aci 99.9 1.7E-23 3.8E-28 138.9 12.3 90 3-93 232-321 (358)
21 PRK07867 acyl-CoA synthetase; 99.9 4E-23 8.6E-28 143.3 12.4 90 4-93 380-469 (529)
22 PRK09274 peptide synthase; Pro 99.9 4.3E-23 9.2E-28 143.2 11.4 88 4-92 417-506 (552)
23 PRK08008 caiC putative crotono 99.9 7.1E-23 1.5E-27 141.0 12.2 92 2-93 395-486 (517)
24 PRK07769 long-chain-fatty-acid 99.9 3E-23 6.5E-28 146.3 10.6 89 4-93 463-574 (631)
25 PRK09188 serine/threonine prot 99.9 7.3E-23 1.6E-27 137.3 11.9 84 3-94 207-294 (365)
26 PRK08279 long-chain-acyl-CoA s 99.9 4.5E-23 9.8E-28 144.5 11.3 92 3-94 437-529 (600)
27 PRK10524 prpE propionyl-CoA sy 99.9 7E-23 1.5E-27 144.3 12.1 91 3-93 471-569 (629)
28 PLN03052 acetate--CoA ligase; 99.9 8.9E-23 1.9E-27 146.4 12.4 90 3-92 587-680 (728)
29 PRK13382 acyl-CoA synthetase; 99.9 8.2E-23 1.8E-27 141.8 11.7 90 4-93 415-504 (537)
30 PRK05677 long-chain-fatty-acid 99.9 9.9E-23 2.1E-27 141.9 12.1 92 2-93 430-521 (562)
31 TIGR02275 DHB_AMP_lig 2,3-dihy 99.9 1.1E-22 2.4E-27 140.7 12.1 91 2-93 405-495 (527)
32 PRK09088 acyl-CoA synthetase; 99.9 1.4E-22 3.1E-27 138.7 12.0 92 2-93 358-449 (488)
33 PLN03102 acyl-activating enzym 99.9 1.1E-22 2.5E-27 142.4 11.8 90 4-93 419-518 (579)
34 PRK09029 O-succinylbenzoic aci 99.9 8.9E-23 1.9E-27 139.0 10.7 89 3-94 330-418 (458)
35 PRK13388 acyl-CoA synthetase; 99.9 1.6E-22 3.5E-27 140.5 12.1 90 4-93 379-468 (540)
36 PLN02246 4-coumarate--CoA liga 99.9 1.7E-22 3.7E-27 140.0 12.1 92 2-93 409-500 (537)
37 PLN02736 long-chain acyl-CoA s 99.9 4.2E-23 9E-28 146.2 9.0 75 1-78 483-558 (651)
38 PRK06060 acyl-CoA synthetase; 99.9 2.1E-22 4.5E-27 143.6 12.5 91 3-93 363-456 (705)
39 PRK06839 acyl-CoA synthetase; 99.9 2.8E-22 6E-27 137.2 12.0 90 4-93 370-459 (496)
40 PRK06155 crotonobetaine/carnit 99.9 3.3E-22 7.2E-27 139.0 12.5 90 4-93 399-488 (542)
41 TIGR03208 cyc_hxne_CoA_lg cycl 99.9 3.7E-22 8.1E-27 138.3 12.6 91 3-93 415-505 (538)
42 PLN02861 long-chain-fatty-acid 99.9 1.1E-22 2.5E-27 144.4 10.3 71 4-77 492-563 (660)
43 COG1021 EntE Peptide arylation 99.9 3E-23 6.5E-28 138.9 6.5 93 1-94 410-502 (542)
44 PRK05852 acyl-CoA synthetase; 99.9 2.6E-22 5.7E-27 138.9 11.5 90 4-93 407-496 (534)
45 PRK08314 long-chain-fatty-acid 99.9 3.4E-22 7.4E-27 138.4 11.7 91 3-93 414-506 (546)
46 PLN02330 4-coumarate--CoA liga 99.9 1.9E-22 4.1E-27 140.1 10.3 92 2-93 414-505 (546)
47 PRK08308 acyl-CoA synthetase; 99.9 5.2E-22 1.1E-26 134.0 12.2 89 3-93 289-377 (414)
48 PRK07008 long-chain-fatty-acid 99.9 4E-22 8.6E-27 138.4 11.1 90 4-93 408-497 (539)
49 PRK05851 long-chain-fatty-acid 99.9 4.1E-22 8.9E-27 138.0 11.0 88 3-92 394-481 (525)
50 PRK06164 acyl-CoA synthetase; 99.9 8.5E-22 1.8E-26 136.4 12.3 91 2-93 403-493 (540)
51 PRK12583 acyl-CoA synthetase; 99.9 1.1E-21 2.3E-26 136.1 12.8 92 2-93 425-516 (558)
52 PRK13383 acyl-CoA synthetase; 99.9 7.6E-22 1.7E-26 136.2 11.8 90 4-93 395-484 (516)
53 PRK13295 cyclohexanecarboxylat 99.9 1.2E-21 2.5E-26 136.2 12.8 90 4-93 418-507 (547)
54 PRK06145 acyl-CoA synthetase; 99.9 8.1E-22 1.8E-26 135.1 11.8 90 4-93 372-461 (497)
55 PRK07656 long-chain-fatty-acid 99.9 1.4E-21 3E-26 134.1 12.3 91 3-93 390-480 (513)
56 PRK04319 acetyl-CoA synthetase 99.9 9.1E-22 2E-26 137.3 11.6 90 4-93 431-523 (570)
57 PRK06178 acyl-CoA synthetase; 99.9 1E-21 2.2E-26 136.8 11.6 91 4-94 441-531 (567)
58 PRK07798 acyl-CoA synthetase; 99.9 1.4E-21 3E-26 134.5 12.1 91 3-93 406-496 (533)
59 PRK08162 acyl-CoA synthetase; 99.9 1.2E-21 2.6E-26 135.8 11.8 90 4-93 415-504 (545)
60 PRK07470 acyl-CoA synthetase; 99.9 1.4E-21 3E-26 135.0 11.9 90 4-93 393-482 (528)
61 PRK05605 long-chain-fatty-acid 99.9 1.3E-21 2.8E-26 136.4 11.8 90 4-93 444-533 (573)
62 PRK10946 entE enterobactin syn 99.9 1.1E-21 2.5E-26 136.0 11.4 90 2-93 406-495 (536)
63 PRK08043 bifunctional acyl-[ac 99.9 1.2E-21 2.5E-26 140.1 11.7 87 4-93 590-676 (718)
64 PRK13390 acyl-CoA synthetase; 99.9 1.6E-21 3.4E-26 134.1 11.8 90 4-93 378-470 (501)
65 PLN02614 long-chain acyl-CoA s 99.9 6.9E-22 1.5E-26 140.6 10.2 72 4-78 495-567 (666)
66 PRK07514 malonyl-CoA synthase; 99.9 2.2E-21 4.7E-26 133.1 12.2 91 3-93 375-465 (504)
67 PRK05620 long-chain-fatty-acid 99.9 1.1E-21 2.5E-26 137.0 10.9 91 3-93 428-521 (576)
68 PRK06018 putative acyl-CoA syn 99.9 2.6E-21 5.6E-26 134.3 12.4 92 2-93 407-498 (542)
69 PRK06710 long-chain-fatty-acid 99.9 1.8E-21 3.8E-26 135.5 11.5 90 4-93 430-519 (563)
70 PRK07787 acyl-CoA synthetase; 99.9 2E-21 4.3E-26 132.9 11.5 89 3-93 348-437 (471)
71 PRK12476 putative fatty-acid-- 99.9 1E-21 2.2E-26 138.2 10.3 88 4-93 475-566 (612)
72 PRK07638 acyl-CoA synthetase; 99.9 1.8E-21 3.8E-26 133.4 10.9 87 3-93 359-445 (487)
73 PRK12492 long-chain-fatty-acid 99.9 3.2E-21 6.9E-26 134.4 12.4 91 2-93 438-528 (562)
74 PRK12406 long-chain-fatty-acid 99.9 4E-21 8.6E-26 132.3 12.7 91 3-93 377-467 (509)
75 PRK08315 AMP-binding domain pr 99.9 3.9E-21 8.4E-26 133.4 12.5 91 3-93 425-515 (559)
76 PRK06334 long chain fatty acid 99.9 2.3E-21 4.9E-26 134.9 11.0 86 2-93 407-498 (539)
77 PTZ00342 acyl-CoA synthetase; 99.9 1.5E-21 3.2E-26 140.5 10.3 74 1-77 566-640 (746)
78 TIGR03443 alpha_am_amid L-amin 99.9 2.2E-21 4.8E-26 145.7 11.6 75 3-77 676-750 (1389)
79 TIGR03098 ligase_PEP_1 acyl-Co 99.9 4.1E-21 8.9E-26 131.9 11.8 90 4-93 393-482 (515)
80 PRK08316 acyl-CoA synthetase; 99.9 4.2E-21 9E-26 132.0 11.3 90 4-93 394-483 (523)
81 PRK08751 putative long-chain f 99.9 4.4E-21 9.4E-26 133.4 11.2 91 2-93 434-524 (560)
82 PRK06188 acyl-CoA synthetase; 99.9 8E-21 1.7E-25 131.2 12.0 90 4-93 392-481 (524)
83 PRK05857 acyl-CoA synthetase; 99.9 4.9E-21 1.1E-25 133.0 10.6 76 4-79 401-476 (540)
84 PRK09192 acyl-CoA synthetase; 99.9 5.1E-21 1.1E-25 133.9 10.2 89 3-93 437-527 (579)
85 PLN02479 acetate-CoA ligase 99.9 5.8E-21 1.3E-25 133.3 10.3 90 4-93 429-523 (567)
86 PLN02387 long-chain-fatty-acid 99.9 7.2E-21 1.6E-25 136.0 10.9 71 5-78 535-606 (696)
87 PRK08276 long-chain-fatty-acid 99.9 1.2E-20 2.6E-25 129.6 11.5 91 3-93 367-460 (502)
88 PRK07059 Long-chain-fatty-acid 99.9 1.8E-20 4E-25 130.3 12.1 91 2-93 432-522 (557)
89 PRK12316 peptide synthase; Pro 99.9 8.3E-21 1.8E-25 153.5 11.7 90 3-93 2379-2468(5163)
90 PRK13391 acyl-CoA synthetase; 99.8 1.8E-20 3.8E-25 129.2 11.7 90 4-93 381-473 (511)
91 PRK06814 acylglycerophosphoeth 99.8 1.4E-20 3E-25 139.4 11.5 88 3-93 1008-1095(1140)
92 PRK06087 short chain acyl-CoA 99.8 1.5E-20 3.2E-25 130.4 10.8 91 2-92 407-498 (547)
93 PRK10252 entF enterobactin syn 99.8 2E-20 4.3E-25 139.7 11.9 91 3-93 835-931 (1296)
94 TIGR03205 pimA dicarboxylate-- 99.8 3E-20 6.4E-25 128.9 11.8 90 4-93 420-510 (541)
95 PRK12316 peptide synthase; Pro 99.8 1.3E-20 2.7E-25 152.5 11.0 88 3-94 884-971 (5163)
96 PRK12467 peptide synthase; Pro 99.8 1.4E-20 3E-25 150.5 10.5 91 3-94 3469-3559(3956)
97 PRK06187 long-chain-fatty-acid 99.8 5.3E-20 1.2E-24 126.2 11.9 90 4-93 394-483 (521)
98 TIGR01734 D-ala-DACP-lig D-ala 99.8 5.9E-20 1.3E-24 126.0 12.0 90 3-93 372-466 (502)
99 PRK07786 long-chain-fatty-acid 99.8 5.4E-20 1.2E-24 127.7 11.7 90 4-93 398-488 (542)
100 TIGR01923 menE O-succinylbenzo 99.8 4.4E-20 9.5E-25 124.7 10.9 89 3-93 318-406 (436)
101 PRK08633 2-acyl-glycerophospho 99.8 2.7E-20 5.9E-25 137.4 10.7 88 3-93 1017-1106(1146)
102 PLN02430 long-chain-fatty-acid 99.8 3.3E-20 7.1E-25 132.0 10.7 72 4-78 492-564 (660)
103 PTZ00216 acyl-CoA synthetase; 99.8 3.8E-20 8.2E-25 132.3 9.7 74 1-77 532-608 (700)
104 PRK03640 O-succinylbenzoic aci 99.8 9.8E-20 2.1E-24 124.4 11.3 88 4-93 359-446 (483)
105 PRK08974 long-chain-fatty-acid 99.8 1.8E-19 3.9E-24 125.4 11.9 89 4-93 431-519 (560)
106 PRK05850 acyl-CoA synthetase; 99.8 1E-19 2.2E-24 127.0 10.2 75 4-81 436-510 (578)
107 PRK04813 D-alanine--poly(phosp 99.8 3.4E-19 7.3E-24 122.1 11.2 90 3-93 374-467 (503)
108 PRK12467 peptide synthase; Pro 99.8 2.6E-19 5.7E-24 143.4 11.9 90 3-93 1952-2049(3956)
109 TIGR02372 4_coum_CoA_lig 4-cou 99.8 4.7E-19 1E-23 119.8 11.1 84 5-93 275-360 (386)
110 PRK05691 peptide synthase; Val 99.8 3.8E-19 8.2E-24 143.1 12.2 90 3-93 1503-1592(4334)
111 TIGR02262 benz_CoA_lig benzoat 99.8 6.4E-19 1.4E-23 121.3 11.7 90 4-93 383-475 (508)
112 PRK05691 peptide synthase; Val 99.8 6.7E-19 1.5E-23 141.7 11.7 90 3-93 2566-2661(4334)
113 PRK08180 feruloyl-CoA synthase 99.8 1.3E-19 2.8E-24 127.8 6.1 74 2-79 437-517 (614)
114 COG1022 FAA1 Long-chain acyl-C 99.8 9E-19 2E-23 123.5 9.4 74 1-78 445-519 (613)
115 PRK07768 long-chain-fatty-acid 99.8 5.3E-18 1.2E-22 117.7 11.0 75 3-77 412-488 (545)
116 PRK12582 acyl-CoA synthetase; 99.7 3.6E-18 7.9E-23 120.6 6.0 65 1-65 448-519 (624)
117 KOG1256|consensus 99.7 2.4E-17 5.1E-22 116.5 7.0 76 1-79 523-599 (691)
118 TIGR02155 PA_CoA_ligase phenyl 99.7 4.1E-16 9E-21 106.0 10.4 76 4-79 288-369 (422)
119 TIGR01733 AA-adenyl-dom amino 99.7 1.8E-16 3.9E-21 106.2 6.0 53 6-58 356-408 (408)
120 KOG1179|consensus 99.6 4.7E-15 1E-19 103.0 9.8 91 3-93 486-577 (649)
121 KOG1180|consensus 99.6 4.6E-15 9.9E-20 102.9 5.8 72 4-78 514-586 (678)
122 KOG1178|consensus 99.4 1.3E-12 2.8E-17 96.4 7.8 90 4-93 453-543 (1032)
123 PF00501 AMP-binding: AMP-bind 99.2 3.7E-11 8.1E-16 80.9 4.1 31 4-34 387-417 (417)
124 TIGR03335 F390_ftsA coenzyme F 99.2 5.9E-10 1.3E-14 76.8 10.0 73 7-79 300-385 (445)
125 PTZ00297 pantothenate kinase; 99.1 6.4E-10 1.4E-14 85.2 7.6 67 7-77 837-905 (1452)
126 COG1541 PaaK Coenzyme F390 syn 99.1 3.1E-09 6.7E-14 73.0 9.9 73 7-79 304-385 (438)
127 PF13193 AMP-binding_C: AMP-bi 99.0 2.3E-09 4.9E-14 56.9 5.3 46 42-93 1-46 (73)
128 COG1020 EntF Non-ribosomal pep 98.9 1.9E-09 4.2E-14 76.6 4.9 47 5-51 596-642 (642)
129 PF14535 AMP-binding_C_2: AMP- 98.3 8.4E-06 1.8E-10 45.5 7.5 46 35-80 1-46 (96)
130 KOG3628|consensus 98.1 2E-05 4.4E-10 59.4 7.6 71 3-78 1217-1298(1363)
131 TIGR02304 aden_form_hyp probab 97.7 0.00037 8.1E-09 48.4 7.7 66 7-76 297-377 (430)
132 PF03321 GH3: GH3 auxin-respon 97.5 0.00074 1.6E-08 48.1 8.0 73 7-79 371-452 (528)
133 PLN02249 indole-3-acetic acid- 96.8 0.028 6.1E-07 40.9 9.9 43 7-49 410-456 (597)
134 PLN02620 indole-3-acetic acid- 94.6 0.49 1.1E-05 34.8 8.5 44 7-50 423-470 (612)
135 PLN02247 indole-3-acetic acid- 93.4 0.2 4.3E-06 36.7 4.7 44 7-50 417-464 (606)
136 PF00403 HMA: Heavy-metal-asso 87.6 2.3 5E-05 21.1 5.3 46 40-93 13-58 (62)
137 PF09580 Spore_YhcN_YlaJ: Spor 84.6 6.9 0.00015 23.8 6.1 24 40-63 77-100 (177)
138 PF10411 DsbC_N: Disulfide bon 76.7 3.3 7.1E-05 20.7 2.3 19 9-27 32-50 (57)
139 KOG3628|consensus 75.7 8.2 0.00018 30.8 4.9 68 5-79 571-649 (1363)
140 TIGR02898 spore_YhcN_YlaJ spor 73.8 18 0.00039 22.1 5.7 23 41-63 57-79 (158)
141 PHA02553 6 baseplate wedge sub 71.5 21 0.00046 26.6 6.0 66 28-93 305-376 (611)
142 PRK10877 protein disulfide iso 71.0 15 0.00033 23.6 4.8 48 9-61 54-104 (232)
143 PRK04306 50S ribosomal protein 69.7 7 0.00015 22.0 2.7 31 7-37 35-72 (98)
144 PF01037 AsnC_trans_reg: AsnC 69.5 13 0.00028 18.7 6.2 44 39-92 11-54 (74)
145 COG0075 Serine-pyruvate aminot 66.9 8 0.00017 27.0 3.1 57 8-64 78-143 (383)
146 PF01514 YscJ_FliF: Secretory 66.8 30 0.00065 21.9 5.5 44 40-83 117-167 (206)
147 KOG2768|consensus 62.8 9.1 0.0002 24.7 2.5 30 10-50 148-177 (231)
148 PTZ00189 60S ribosomal protein 61.7 12 0.00026 23.0 2.8 30 7-36 34-70 (160)
149 PF04784 DUF547: Protein of un 61.2 14 0.00031 21.1 3.0 22 29-50 50-71 (117)
150 smart00653 eIF2B_5 domain pres 61.1 21 0.00045 20.5 3.6 27 13-50 50-76 (110)
151 PRK09509 fieF ferrous iron eff 60.9 38 0.00083 22.5 5.4 42 40-81 215-256 (299)
152 PRK11657 dsbG disulfide isomer 59.8 46 0.001 21.7 5.8 34 10-46 58-91 (251)
153 PF04443 LuxE: Acyl-protein sy 59.7 13 0.00029 25.7 3.1 25 5-29 318-350 (365)
154 PF08255 Leader_Trp: Trp-opero 59.1 4.7 0.0001 14.4 0.5 6 4-9 8-13 (14)
155 PF08478 POTRA_1: POTRA domain 56.7 5.7 0.00012 20.0 0.8 25 37-61 33-57 (69)
156 PF01436 NHL: NHL repeat; Int 56.6 15 0.00033 15.2 3.6 18 15-32 9-26 (28)
157 KOG1556|consensus 55.1 4.7 0.0001 26.6 0.3 10 5-14 94-103 (309)
158 PLN00190 60S ribosomal protein 54.5 15 0.00033 22.5 2.4 29 7-35 34-69 (158)
159 COG0386 BtuE Glutathione perox 53.7 15 0.00033 22.6 2.3 28 22-49 131-158 (162)
160 PF08339 RTX_C: RTX C-terminal 53.3 3.7 8E-05 24.8 -0.3 36 5-48 36-71 (145)
161 PF11253 DUF3052: Protein of u 53.2 46 0.001 19.7 4.4 43 6-52 52-104 (127)
162 cd04717 BAH_polybromo BAH, or 51.6 22 0.00047 20.3 2.7 40 5-44 2-51 (121)
163 PF01426 BAH: BAH domain; Int 51.4 40 0.00086 18.7 3.8 25 7-31 3-29 (119)
164 PF04865 Baseplate_J: Baseplat 48.5 46 0.00099 21.2 4.1 63 26-91 107-173 (243)
165 TIGR02804 ExbD_2 TonB system t 47.9 52 0.0011 18.8 5.0 22 29-50 60-81 (121)
166 TIGR01297 CDF cation diffusion 44.0 86 0.0019 20.2 6.6 44 39-82 193-237 (268)
167 PRK05934 type III secretion sy 43.7 1.1E+02 0.0023 21.2 6.6 48 41-88 74-125 (341)
168 PF02680 DUF211: Uncharacteriz 43.5 60 0.0013 18.2 5.6 60 29-93 10-69 (95)
169 PF06739 SBBP: Beta-propeller 42.9 25 0.00054 15.9 1.7 15 14-28 19-33 (38)
170 PRK15348 type III secretion sy 42.5 99 0.0021 20.4 6.1 22 40-61 109-130 (249)
171 KOG0640|consensus 41.7 1.2E+02 0.0026 21.2 5.6 45 13-59 267-312 (430)
172 PF04126 Cyclophil_like: Cyclo 41.5 35 0.00075 19.7 2.5 17 7-23 60-76 (120)
173 PF07308 DUF1456: Protein of u 41.3 6.9 0.00015 20.4 -0.4 20 30-49 22-41 (68)
174 TIGR02544 III_secr_YscJ type I 40.9 92 0.002 19.6 7.0 22 40-61 109-130 (193)
175 cd04888 ACT_PheB-BS C-terminal 40.0 38 0.00082 17.0 2.4 26 34-59 50-75 (76)
176 COG5431 Uncharacterized metal- 39.6 76 0.0016 18.2 4.5 42 8-49 19-64 (117)
177 PF11142 DUF2917: Protein of u 38.1 57 0.0012 16.5 2.7 23 3-25 36-58 (63)
178 cd02969 PRX_like1 Peroxiredoxi 37.9 74 0.0016 19.0 3.7 38 12-49 113-150 (171)
179 PF02839 CBM_5_12: Carbohydrat 37.5 44 0.00096 15.0 2.6 20 3-24 6-25 (41)
180 PF01883 DUF59: Domain of unkn 37.4 51 0.0011 16.7 2.6 19 40-58 54-72 (72)
181 PHA03247 large tegument protei 37.2 2.8E+02 0.0061 25.4 7.4 74 3-91 147-221 (3151)
182 cd04710 BAH_fungalPHD BAH, or 36.9 51 0.0011 19.5 2.8 31 3-33 8-40 (135)
183 PF10777 YlaC: Inner membrane 36.1 65 0.0014 19.7 3.1 37 7-55 86-126 (155)
184 PLN02384 ribose-5-phosphate is 36.0 1.3E+02 0.0029 20.1 5.0 39 13-57 204-242 (264)
185 cd04709 BAH_MTA BAH, or Bromo 36.0 41 0.00089 20.7 2.3 28 5-32 2-30 (164)
186 PF09926 DUF2158: Uncharacteri 35.2 24 0.00053 17.4 1.0 13 7-19 1-13 (53)
187 PF13642 DUF4144: protein stru 35.1 64 0.0014 18.2 2.8 47 6-53 30-79 (101)
188 cd03692 mtIF2_IVc mtIF2_IVc: t 34.6 74 0.0016 16.9 3.0 25 4-28 24-48 (84)
189 COG2063 FlgH Flagellar basal b 34.6 54 0.0012 21.4 2.8 47 12-59 153-207 (230)
190 PF07494 Reg_prop: Two compone 34.4 39 0.00085 13.4 1.6 11 14-24 11-21 (24)
191 PRK10893 lipopolysaccharide ex 34.1 62 0.0014 20.3 3.0 21 6-26 95-115 (192)
192 PF14326 DUF4384: Domain of un 34.1 70 0.0015 16.9 2.9 21 7-27 3-27 (83)
193 PF07193 DUF1408: Protein of u 34.1 51 0.0011 17.1 2.1 14 16-29 41-54 (75)
194 PRK12700 flgH flagellar basal 33.4 71 0.0015 20.8 3.2 32 12-44 150-188 (230)
195 PRK05529 cell division protein 33.4 77 0.0017 20.8 3.4 25 36-60 92-116 (255)
196 PF01545 Cation_efflux: Cation 32.9 1.1E+02 0.0025 19.7 4.2 40 41-80 208-248 (284)
197 cd01398 RPI_A RPI_A: Ribose 5- 32.8 1.3E+02 0.0029 19.1 4.6 39 14-59 164-202 (213)
198 PF11848 DUF3368: Domain of un 32.6 43 0.00093 15.9 1.7 19 32-50 29-47 (48)
199 COG1888 Uncharacterized protei 32.4 60 0.0013 18.1 2.4 24 31-54 53-76 (97)
200 COG2390 DeoR Transcriptional r 32.3 67 0.0015 22.0 3.1 37 26-62 51-89 (321)
201 PRK03988 translation initiatio 32.2 1.1E+02 0.0023 18.3 3.6 22 18-50 77-98 (138)
202 PF02107 FlgH: Flagellar L-rin 32.1 76 0.0016 19.7 3.1 32 11-44 99-138 (179)
203 PRK09993 C-lysozyme inhibitor; 31.8 59 0.0013 19.9 2.5 32 20-52 117-148 (153)
204 COG4669 EscJ Type III secretor 31.6 1.6E+02 0.0034 19.5 6.3 65 28-92 87-172 (246)
205 cd08047 TAF7 TATA Binding Prot 31.5 26 0.00056 21.4 0.9 15 1-15 67-81 (162)
206 TIGR03432 yjhG_yagF probable d 31.4 1.2E+02 0.0025 23.1 4.3 45 5-51 553-597 (640)
207 TIGR00489 aEF-1_beta translati 31.4 96 0.0021 17.0 3.4 25 37-61 61-85 (88)
208 PRK10775 cell division protein 31.3 85 0.0018 20.9 3.4 23 37-59 90-112 (276)
209 COG2139 RPL21A Ribosomal prote 31.2 48 0.001 18.7 1.8 29 7-35 33-68 (98)
210 PF01060 DUF290: Transthyretin 31.0 84 0.0018 16.5 2.8 18 13-30 33-50 (80)
211 COG5475 Uncharacterized small 30.5 48 0.001 16.7 1.6 22 6-27 4-26 (60)
212 PRK13978 ribose-5-phosphate is 29.9 1.6E+02 0.0035 19.2 5.0 45 6-57 161-206 (228)
213 PF04658 TAFII55_N: TAFII55 pr 29.7 34 0.00073 21.0 1.2 15 1-15 69-83 (162)
214 PF01948 PyrI: Aspartate carba 29.5 73 0.0016 17.9 2.4 28 25-53 51-78 (96)
215 PF13342 Toprim_Crpt: C-termin 29.5 52 0.0011 16.7 1.7 42 33-80 11-54 (62)
216 PF01398 JAB: JAB1/Mov34/MPN/P 29.1 19 0.00041 20.1 0.1 7 5-11 85-91 (114)
217 COG3592 Uncharacterized conser 29.0 46 0.001 17.5 1.5 30 20-52 37-66 (74)
218 PRK00907 hypothetical protein; 28.9 1.1E+02 0.0024 16.9 4.1 54 39-93 30-84 (92)
219 PF12433 PV_NSP1: Parvovirus n 28.8 38 0.00082 18.1 1.2 14 3-16 38-51 (80)
220 PRK11169 leucine-responsive tr 28.4 1.4E+02 0.003 17.9 5.4 20 40-59 90-109 (164)
221 cd04714 BAH_BAHCC1 BAH, or Bro 28.2 87 0.0019 18.0 2.7 28 5-32 2-31 (121)
222 COG1504 Uncharacterized conser 28.2 58 0.0013 18.9 1.9 21 33-53 42-64 (121)
223 PF12101 DUF3577: Protein of u 28.1 40 0.00088 20.2 1.3 22 21-42 107-130 (137)
224 TIGR01219 Pmev_kin_ERG8 phosph 28.1 96 0.0021 22.4 3.4 43 32-74 373-415 (454)
225 PRK06007 fliF flagellar MS-rin 27.8 2.5E+02 0.0055 20.7 6.7 50 39-88 136-192 (542)
226 KOG2975|consensus 27.7 25 0.00054 23.5 0.4 8 5-12 102-109 (288)
227 PRK11267 biopolymer transport 27.2 1.3E+02 0.0028 17.7 3.4 22 29-50 72-93 (141)
228 PF11523 DUF3223: Protein of u 27.1 1.1E+02 0.0023 16.2 4.5 48 34-81 10-67 (76)
229 cd07970 OBF_DNA_ligase_LigC Th 26.9 78 0.0017 18.2 2.4 16 12-27 22-37 (122)
230 KOG3050|consensus 26.8 27 0.00058 23.2 0.4 10 5-14 94-103 (299)
231 PF01611 Filo_glycop: Filoviru 26.8 52 0.0011 22.7 1.8 42 9-51 134-184 (364)
232 PF01873 eIF-5_eIF-2B: Domain 26.5 1E+02 0.0023 18.0 2.8 27 12-49 62-88 (125)
233 PRK00435 ef1B elongation facto 26.3 1.2E+02 0.0027 16.6 3.2 25 37-61 61-85 (88)
234 PRK04980 hypothetical protein; 26.2 1.3E+02 0.0029 17.0 5.4 54 5-60 30-98 (102)
235 COG1781 PyrI Aspartate carbamo 26.1 69 0.0015 19.6 2.1 27 25-52 54-80 (153)
236 PRK11179 DNA-binding transcrip 26.1 1.5E+02 0.0033 17.5 6.0 21 40-60 83-103 (153)
237 cd07749 NT_Pol-beta-like_1 Nuc 26.1 91 0.002 19.1 2.6 40 8-47 88-130 (156)
238 COG4835 Uncharacterized protei 25.7 14 0.0003 21.3 -0.9 26 20-45 63-89 (124)
239 cd08064 MPN_eIF3f Mpr1p, Pad1p 25.5 31 0.00066 22.7 0.5 7 5-11 80-86 (265)
240 KOG0117|consensus 25.3 2.7E+02 0.0058 20.4 5.0 41 39-79 177-218 (506)
241 PRK12693 flgG flagellar basal 25.3 79 0.0017 20.7 2.4 38 2-40 98-138 (261)
242 PF12095 DUF3571: Protein of u 24.9 83 0.0018 17.2 2.1 22 72-93 11-35 (83)
243 PRK00702 ribose-5-phosphate is 24.8 2E+02 0.0043 18.5 5.4 43 7-57 158-200 (220)
244 PRK00556 minC septum formation 24.5 2E+02 0.0043 18.4 4.7 20 17-36 126-145 (194)
245 cd08062 MPN_RPN7_8 Mpr1p, Pad1 24.2 28 0.00061 23.2 0.2 8 5-12 86-93 (280)
246 PRK12818 flgG flagellar basal 23.9 81 0.0018 20.7 2.3 37 2-39 98-137 (256)
247 COG1141 Fer Ferredoxin [Energy 23.7 1.2E+02 0.0027 15.8 2.7 38 9-52 20-61 (68)
248 PF08002 DUF1697: Protein of u 23.4 1.2E+02 0.0026 17.9 2.7 28 30-58 10-38 (137)
249 PF10079 DUF2317: Uncharacteri 23.4 2.3E+02 0.0051 21.0 4.7 42 13-55 287-330 (542)
250 PF10856 DUF2678: Protein of u 23.4 26 0.00057 20.4 -0.0 6 6-11 81-86 (118)
251 PF05278 PEARLI-4: Arabidopsis 23.4 1.1E+02 0.0023 20.6 2.7 34 26-59 82-118 (269)
252 cd04715 BAH_Orc1p_like BAH, or 23.2 1.3E+02 0.0027 18.4 2.9 41 5-45 28-78 (159)
253 PRK15418 transcriptional regul 22.8 1E+02 0.0022 20.9 2.7 29 33-61 63-91 (318)
254 PRK10606 btuE putative glutath 22.8 70 0.0015 19.9 1.7 29 21-49 149-179 (183)
255 PF06940 DUF1287: Domain of un 22.7 66 0.0014 19.9 1.6 20 6-25 106-125 (164)
256 TIGR00206 fliF flagellar basal 22.6 3.3E+02 0.0072 20.3 6.9 51 38-88 135-192 (555)
257 COG4014 Uncharacterized protei 22.6 1.2E+02 0.0025 16.9 2.4 19 5-23 16-39 (97)
258 PRK12641 flgF flagellar basal 22.4 1.1E+02 0.0024 20.0 2.7 36 2-39 81-119 (252)
259 COG3330 Uncharacterized protei 22.4 1E+02 0.0023 19.8 2.4 19 11-29 129-147 (215)
260 PF08772 NOB1_Zn_bind: Nin one 22.3 24 0.00053 18.7 -0.3 26 15-40 42-67 (73)
261 PRK00106 hypothetical protein; 22.3 41 0.00088 24.8 0.7 22 40-61 460-481 (535)
262 PRK12697 flgH flagellar basal 22.2 1.2E+02 0.0027 19.7 2.8 33 11-44 145-184 (226)
263 cd08063 MPN_CSN6 Mpr1p, Pad1p 22.1 37 0.0008 22.6 0.5 8 5-12 87-94 (288)
264 PLN03246 26S proteasome regula 21.8 37 0.00079 23.0 0.4 9 5-13 91-99 (303)
265 COG0841 AcrB Cation/multidrug 21.6 2.8E+02 0.006 22.4 5.0 47 41-93 158-208 (1009)
266 cd03063 TRX_Fd_FDH_beta TRX-li 21.6 1.6E+02 0.0035 16.2 3.3 15 36-50 63-77 (92)
267 COG1589 FtsQ Cell division sep 21.5 1.7E+02 0.0036 19.3 3.4 25 36-60 91-115 (269)
268 PF06068 TIP49: TIP49 C-termin 21.4 1.3E+02 0.0029 21.4 3.0 24 7-30 171-195 (398)
269 KOG2394|consensus 21.1 1.2E+02 0.0026 22.7 2.8 21 13-33 338-358 (636)
270 KOG2863|consensus 21.0 1.2E+02 0.0026 21.6 2.7 19 20-39 103-121 (456)
271 PF04972 BON: BON domain; Int 21.0 1.2E+02 0.0025 14.8 2.1 44 6-56 13-56 (64)
272 TIGR03319 YmdA_YtgF conserved 20.9 1.3E+02 0.0028 22.0 3.0 33 39-76 438-470 (514)
273 PF06890 Phage_Mu_Gp45: Bacter 20.8 2E+02 0.0043 17.7 3.4 35 7-41 75-109 (162)
274 cd04370 BAH BAH, or Bromo Adja 20.8 1.3E+02 0.0028 16.5 2.5 26 6-31 3-32 (123)
275 TIGR02803 ExbD_1 TonB system t 20.7 1.8E+02 0.0039 16.5 3.4 23 28-50 57-79 (122)
276 PF05670 DUF814: Domain of unk 20.7 1E+02 0.0022 16.6 2.0 14 15-28 3-16 (90)
277 PF07194 P2: P2 response regul 20.6 1.5E+02 0.0033 15.6 3.4 23 38-60 60-82 (84)
278 PF11519 DUF3222: Protein of u 20.5 20 0.00043 18.6 -0.8 11 6-16 44-54 (74)
279 COG4786 FlgG Flagellar basal b 20.5 1.5E+02 0.0033 19.8 3.0 38 2-40 98-138 (265)
280 PF07338 DUF1471: Protein of u 20.4 88 0.0019 15.4 1.5 34 30-63 7-43 (56)
281 TIGR00021 rpiA ribose 5-phosph 20.3 2.1E+02 0.0045 18.4 3.5 22 38-59 181-202 (218)
282 PF05771 Pox_A31: Poxvirus A31 20.3 73 0.0016 18.4 1.3 24 16-39 86-109 (114)
283 PF06970 RepA_N: Replication i 20.2 57 0.0012 17.3 0.9 16 14-29 42-57 (76)
284 smart00344 HTH_ASNC helix_turn 20.2 1.5E+02 0.0033 16.1 2.6 20 40-59 77-96 (108)
No 1
>KOG1176|consensus
Probab=99.97 E-value=1.3e-31 Score=185.96 Aligned_cols=94 Identities=39% Similarity=0.560 Sum_probs=90.6
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|+++|||+|||+|++|+||+|+|++|.+|+||.+|++|+|.|||++|.+||.|.||+|++.+++..|+.++|+|+.+++.
T Consensus 404 ~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~ 483 (537)
T KOG1176|consen 404 FDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS 483 (537)
T ss_pred cccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcC
Q psy5015 81 KLNADDIRTFCKGK 94 (94)
Q Consensus 81 ~~~~~~l~~~l~~~ 94 (94)
..++++|.++|+++
T Consensus 484 ~lte~di~~~v~k~ 497 (537)
T KOG1176|consen 484 TLTEKDIIEYVRKK 497 (537)
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999999875
No 2
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=5.5e-26 Score=158.12 Aligned_cols=91 Identities=47% Similarity=0.710 Sum_probs=85.4
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC--C
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--A 80 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~ 80 (94)
++|||+|||+|++|++|+++|.||.+|+|+++|++|+|.|||.++.+||.|.+++|++++++..|+.++++++++++ .
T Consensus 399 ~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~ 478 (534)
T COG0318 399 EDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDA 478 (534)
T ss_pred cCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999876 3
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.++|.++|++
T Consensus 479 ~~~~~~i~~~~~~ 491 (534)
T COG0318 479 ELTAEELRAFLRK 491 (534)
T ss_pred CCCHHHHHHHHHh
Confidence 4588999999875
No 3
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.93 E-value=1.1e-25 Score=155.04 Aligned_cols=90 Identities=22% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeeeEEEEEeeCCCCC-ceEEEEE---EEcC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-EEVGISI---KLKE 78 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~ 78 (94)
.+||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+ ||.|.+|+|++++++..+ +.++++| ++++
T Consensus 356 ~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~ 435 (499)
T PLN03051 356 MPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKK 435 (499)
T ss_pred cceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecc
Confidence 3589999999999999999999999999999999999999999996 999999999999998888 6788888 7776
Q ss_pred CC-CCCHHHHHHHHhc
Q psy5015 79 NA-KLNADDIRTFCKG 93 (94)
Q Consensus 79 ~~-~~~~~~l~~~l~~ 93 (94)
+. ..+.++|+++|++
T Consensus 436 ~~~~~~~~~l~~~~~~ 451 (499)
T PLN03051 436 GFDQARPEALQKKFQE 451 (499)
T ss_pred cccccchHHHHHHHHH
Confidence 54 4667788877753
No 4
>KOG1177|consensus
Probab=99.93 E-value=4.1e-25 Score=150.02 Aligned_cols=93 Identities=48% Similarity=0.798 Sum_probs=87.7
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+.||+|||++.++++|.++++||.+|||+.+|++|||.|||+.|.+||.|.++.|+++++...|+.++|+|.++++..
T Consensus 458 ~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e 537 (596)
T KOG1177|consen 458 GNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAE 537 (596)
T ss_pred ccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred --CCHHHHHHHHhcC
Q psy5015 82 --LNADDIRTFCKGK 94 (94)
Q Consensus 82 --~~~~~l~~~l~~~ 94 (94)
.+.++|+.+|+.+
T Consensus 538 ~~~t~E~lKa~Ck~k 552 (596)
T KOG1177|consen 538 GKTTAETLKAMCKGK 552 (596)
T ss_pred ccccHHHHHHHHhcc
Confidence 5889999999864
No 5
>PRK07529 AMP-binding domain protein; Validated
Probab=99.93 E-value=8.5e-25 Score=154.40 Aligned_cols=92 Identities=36% Similarity=0.462 Sum_probs=86.5
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
++|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++|++.++...
T Consensus 443 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~ 522 (632)
T PRK07529 443 EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASA 522 (632)
T ss_pred CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999998889999999999988778
Q ss_pred CHHHHHHHHhcC
Q psy5015 83 NADDIRTFCKGK 94 (94)
Q Consensus 83 ~~~~l~~~l~~~ 94 (94)
+.++|+++|+++
T Consensus 523 ~~~~l~~~~~~~ 534 (632)
T PRK07529 523 TEAELLAFARDH 534 (632)
T ss_pred CHHHHHHHHHHh
Confidence 888999988753
No 6
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.93 E-value=3.2e-25 Score=153.81 Aligned_cols=84 Identities=33% Similarity=0.366 Sum_probs=78.4
Q ss_pred eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHH
Q psy5015 6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD 85 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 85 (94)
||.|||.+++|+||+++|+||.||+||+.|+||.|.|||++|.+||.|.||+|++.+++..|+.+.+||+++++...+
T Consensus 397 ~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-- 474 (528)
T COG0365 397 WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-- 474 (528)
T ss_pred eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987555
Q ss_pred HHHHHH
Q psy5015 86 DIRTFC 91 (94)
Q Consensus 86 ~l~~~l 91 (94)
+|++.+
T Consensus 475 ~L~~ei 480 (528)
T COG0365 475 ELAEEI 480 (528)
T ss_pred HHHHHH
Confidence 554444
No 7
>PLN02654 acetate-CoA ligase
Probab=99.92 E-value=1.5e-24 Score=154.11 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=81.6
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||++++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++|+++++...+
T Consensus 512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~ 591 (666)
T PLN02654 512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS 591 (666)
T ss_pred CCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999998899999999998876554
Q ss_pred H---HHHHHHHhc
Q psy5015 84 A---DDIRTFCKG 93 (94)
Q Consensus 84 ~---~~l~~~l~~ 93 (94)
. ++|+++|++
T Consensus 592 ~~l~~~l~~~~~~ 604 (666)
T PLN02654 592 EELRKSLILTVRN 604 (666)
T ss_pred HHHHHHHHHHHHH
Confidence 3 356666654
No 8
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.92 E-value=1.8e-24 Score=159.05 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=83.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
++|||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+||.|.+|+|++.+++. ++.++++|+++++...
T Consensus 834 ~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~ 912 (994)
T PRK07868 834 ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAI 912 (994)
T ss_pred CCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcC
Confidence 579999999999999999999999999999999999999999999999999999999998865 5788999999887778
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|+++|++
T Consensus 913 ~~~~L~~~l~~ 923 (994)
T PRK07868 913 TAADLTEALAS 923 (994)
T ss_pred CHHHHHHHHHh
Confidence 88999999863
No 9
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.92 E-value=2.2e-24 Score=152.87 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+|++++||+++|.||.||+||++|+||+|.|||++|.+||.|.+++|++++++..++.++++|+++++...+
T Consensus 498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~ 577 (652)
T TIGR01217 498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD 577 (652)
T ss_pred CCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999998899999999998876555
Q ss_pred H---HHHHHHHhc
Q psy5015 84 A---DDIRTFCKG 93 (94)
Q Consensus 84 ~---~~l~~~l~~ 93 (94)
. ++|+++|++
T Consensus 578 ~~~~~~l~~~~~~ 590 (652)
T TIGR01217 578 DALLDRIKRTIRA 590 (652)
T ss_pred HHHHHHHHHHHHh
Confidence 4 477777764
No 10
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.92 E-value=3.4e-24 Score=146.63 Aligned_cols=90 Identities=30% Similarity=0.436 Sum_probs=82.8
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||++++++||+++|.||.||+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.+++++++.++ ..
T Consensus 322 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~ 400 (452)
T PRK07445 322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SI 400 (452)
T ss_pred CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CC
Confidence 46899999999999999999999999999999999999999999999999999999999998888999999988765 45
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++++++|++
T Consensus 401 ~~~~l~~~~~~ 411 (452)
T PRK07445 401 SLEELKTAIKD 411 (452)
T ss_pred CHHHHHHHHHH
Confidence 67888888875
No 11
>KOG1175|consensus
Probab=99.92 E-value=1.3e-24 Score=152.20 Aligned_cols=88 Identities=30% Similarity=0.344 Sum_probs=81.3
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
.|+|+|||.+++|++|++++.||.||+||++|+|+++.|||+++.+||.|.|++|++.+++..|+.+.+||+++++ ..+
T Consensus 474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g-~~~ 552 (626)
T KOG1175|consen 474 PGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG-SHD 552 (626)
T ss_pred CceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC-CCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998 455
Q ss_pred HHHHHHHHh
Q psy5015 84 ADDIRTFCK 92 (94)
Q Consensus 84 ~~~l~~~l~ 92 (94)
.++|.+.|+
T Consensus 553 ~~~L~kel~ 561 (626)
T KOG1175|consen 553 PEQLTKELV 561 (626)
T ss_pred hHHHHHHHH
Confidence 555555554
No 12
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.92 E-value=5.2e-24 Score=150.91 Aligned_cols=75 Identities=28% Similarity=0.240 Sum_probs=72.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
+|||+|||+|+++++|+++|+||.||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++|++++
T Consensus 491 ~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~ 565 (647)
T PTZ00237 491 PGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQ 565 (647)
T ss_pred CCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEecc
Confidence 689999999999999999999999999999999999999999999999999999999999988999999999874
No 13
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.91 E-value=3.9e-24 Score=150.86 Aligned_cols=91 Identities=29% Similarity=0.325 Sum_probs=81.0
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...
T Consensus 470 ~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~ 549 (628)
T TIGR02316 470 KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA 549 (628)
T ss_pred CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc
Confidence 36799999999999999999999999999999999999999999999999999999999999889999999998765432
Q ss_pred --------CHHHHHHHHhc
Q psy5015 83 --------NADDIRTFCKG 93 (94)
Q Consensus 83 --------~~~~l~~~l~~ 93 (94)
..++|+++|++
T Consensus 550 ~~~~~~~~~~~~i~~~~~~ 568 (628)
T TIGR02316 550 GDAHDPHAVETGMMDCVVR 568 (628)
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 23567777764
No 14
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.91 E-value=8.6e-24 Score=149.13 Aligned_cols=91 Identities=26% Similarity=0.388 Sum_probs=82.7
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|++.++...
T Consensus 481 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~ 560 (637)
T PRK00174 481 FKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP 560 (637)
T ss_pred CCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999998889999999999876554
Q ss_pred C---HHHHHHHHhc
Q psy5015 83 N---ADDIRTFCKG 93 (94)
Q Consensus 83 ~---~~~l~~~l~~ 93 (94)
+ .++|+++|++
T Consensus 561 ~~~~~~~l~~~l~~ 574 (637)
T PRK00174 561 SDELRKELRNWVRK 574 (637)
T ss_pred CHHHHHHHHHHHHh
Confidence 4 4678887765
No 15
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.91 E-value=6.4e-24 Score=147.35 Aligned_cols=91 Identities=34% Similarity=0.545 Sum_probs=85.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.++++|+++++...+
T Consensus 426 ~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~ 505 (549)
T PRK07788 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD 505 (549)
T ss_pred CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999988899999999998877788
Q ss_pred HHHHHHHHhcC
Q psy5015 84 ADDIRTFCKGK 94 (94)
Q Consensus 84 ~~~l~~~l~~~ 94 (94)
.++|+++|+++
T Consensus 506 ~~~l~~~~~~~ 516 (549)
T PRK07788 506 EDAIKDYVRDN 516 (549)
T ss_pred HHHHHHHHHHh
Confidence 88999998763
No 16
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.91 E-value=1e-23 Score=148.45 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=82.3
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++|+++++...+
T Consensus 474 ~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~ 553 (625)
T TIGR02188 474 PGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPD 553 (625)
T ss_pred CCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999998899999999998876544
Q ss_pred H---HHHHHHHhc
Q psy5015 84 A---DDIRTFCKG 93 (94)
Q Consensus 84 ~---~~l~~~l~~ 93 (94)
. ++|+++|++
T Consensus 554 ~~~~~~l~~~~~~ 566 (625)
T TIGR02188 554 DELRKELRKHVRK 566 (625)
T ss_pred HHHHHHHHHHHHh
Confidence 3 577777764
No 17
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.91 E-value=6.4e-24 Score=147.91 Aligned_cols=92 Identities=25% Similarity=0.401 Sum_probs=85.2
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+|||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++|+.+++..
T Consensus 427 ~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 506 (560)
T PLN02574 427 DKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST 506 (560)
T ss_pred cCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999998888888999999887767
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++|.+++++
T Consensus 507 ~~~~~l~~~~~~ 518 (560)
T PLN02574 507 LSQEAVINYVAK 518 (560)
T ss_pred CCHHHHHHHHHH
Confidence 778889988875
No 18
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.91 E-value=9.8e-24 Score=147.07 Aligned_cols=92 Identities=30% Similarity=0.523 Sum_probs=82.9
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC-
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA- 80 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~- 80 (94)
+.+|||+|||+|+++++|+++|.||.+|+||++|++|+|.+||+++.+||.|.+++|++.++...++.++++|+++++.
T Consensus 411 ~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~ 490 (563)
T PLN02860 411 SNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWI 490 (563)
T ss_pred cCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccc
Confidence 3579999999999999999999999999999999999999999999999999999999999988889999999987652
Q ss_pred -------------CCCHHHHHHHHhc
Q psy5015 81 -------------KLNADDIRTFCKG 93 (94)
Q Consensus 81 -------------~~~~~~l~~~l~~ 93 (94)
..+.++|++++++
T Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 516 (563)
T PLN02860 491 WSDNEKENAKKNLTLSSETLRHHCRE 516 (563)
T ss_pred cccccchhhcccccccHHHHHHHHhh
Confidence 3456778888764
No 19
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.91 E-value=1.1e-23 Score=149.09 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=81.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||++++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...+
T Consensus 497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~ 576 (655)
T PRK03584 497 PGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLD 576 (655)
T ss_pred CCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999988899999999998765554
Q ss_pred H---HHHHHHHhc
Q psy5015 84 A---DDIRTFCKG 93 (94)
Q Consensus 84 ~---~~l~~~l~~ 93 (94)
. ++|+++|++
T Consensus 577 ~~~~~~l~~~~~~ 589 (655)
T PRK03584 577 DALRARIRTTIRT 589 (655)
T ss_pred HHHHHHHHHHHHh
Confidence 3 467777764
No 20
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.91 E-value=1.7e-23 Score=138.91 Aligned_cols=90 Identities=27% Similarity=0.436 Sum_probs=82.7
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||++++ ++|.+++.||.||+||++|.+|+|.+||++|.+||.|.+|+|++.+++..++.++++++...+...
T Consensus 232 ~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~ 310 (358)
T PRK07824 232 EPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAP 310 (358)
T ss_pred CCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCc
Confidence 4679999999999 799999999999999999999999999999999999999999999988888999999988776667
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|++++++
T Consensus 311 ~~~~i~~~~~~ 321 (358)
T PRK07824 311 TLEALRAHVAR 321 (358)
T ss_pred CHHHHHHHHHh
Confidence 88889888875
No 21
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.90 E-value=4e-23 Score=143.33 Aligned_cols=90 Identities=28% Similarity=0.410 Sum_probs=84.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.+++++++.++...+
T Consensus 380 ~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~ 459 (529)
T PRK07867 380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD 459 (529)
T ss_pred CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999988899999999998877788
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 460 ~~~l~~~~~~ 469 (529)
T PRK07867 460 PDAFAEFLAA 469 (529)
T ss_pred HHHHHHHHHh
Confidence 8899888864
No 22
>PRK09274 peptide synthase; Provisional
Probab=99.90 E-value=4.3e-23 Score=143.24 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=76.9
Q ss_pred CC--eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 4 YA--CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 4 ~~--~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+| ||+|||+|+++++|++++.||.||+||++|.+|+|.+||++|.+||.|.+|+|++.+++ .++.++++|++.++..
T Consensus 417 ~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~ 495 (552)
T PRK09274 417 QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVA 495 (552)
T ss_pred CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccc
Confidence 45 99999999999999999999999999999999999999999999999999999999875 4567888888887766
Q ss_pred CCHHHHHHHHh
Q psy5015 82 LNADDIRTFCK 92 (94)
Q Consensus 82 ~~~~~l~~~l~ 92 (94)
.+.++|.++|+
T Consensus 496 ~~~~~l~~~l~ 506 (552)
T PRK09274 496 CSKSALYQELR 506 (552)
T ss_pred cchHHHhhhhH
Confidence 66555555554
No 23
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.90 E-value=7.1e-23 Score=141.02 Aligned_cols=92 Identities=28% Similarity=0.438 Sum_probs=85.1
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.+.++|+++++..
T Consensus 395 ~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~ 474 (517)
T PRK08008 395 EADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET 474 (517)
T ss_pred cCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999998887888999999988766
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++|+++|++
T Consensus 475 ~~~~~l~~~~~~ 486 (517)
T PRK08008 475 LSEEEFFAFCEQ 486 (517)
T ss_pred CCHHHHHHHHHh
Confidence 778889998875
No 24
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.90 E-value=3e-23 Score=146.27 Aligned_cols=89 Identities=28% Similarity=0.338 Sum_probs=78.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeee--EEEEEeeC-----------------
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPD----------------- 63 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~----------------- 63 (94)
+|||+|||+|+++ +|+|+|+||.||+||++|++|+|.|||++|.+ ||.|.+ ++|+++++
T Consensus 463 ~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~ 541 (631)
T PRK07769 463 ALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKF 541 (631)
T ss_pred CCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccc
Confidence 5899999999995 99999999999999999999999999999996 899997 88998887
Q ss_pred --CCCCceEEEEEEEcCCC-CCCHHHHHHHHhc
Q psy5015 64 --ERMGEEVGISIKLKENA-KLNADDIRTFCKG 93 (94)
Q Consensus 64 --~~~~~~~~~~v~~~~~~-~~~~~~l~~~l~~ 93 (94)
+..++.++++|++.++. ..+.++|.++|++
T Consensus 542 ~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~ 574 (631)
T PRK07769 542 DPEDTSEQLVIVAERAPGAHKLDPQPIADDIRA 574 (631)
T ss_pred ccCCCCccEEEEEEecCccccccHHHHHHHHHH
Confidence 45778899999988763 4677888888875
No 25
>PRK09188 serine/threonine protein kinase; Provisional
Probab=99.90 E-value=7.3e-23 Score=137.26 Aligned_cols=84 Identities=12% Similarity=0.037 Sum_probs=76.8
Q ss_pred CCCeEEcCceEEE-ecCCeEEEEeecCCeEEeCc---EEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 3 GYACGLKQDQFVL-REDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 3 ~~~~~~TGD~~~~-~~~G~~~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
.+|||+|||+|++ |++|+|+|.||.+ +| ++|+|. ||++|.+||+|.+|+|++++++..++.++|+|++.+
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 5799999999998 6999999999998 88 899999 999999999999999999999999999999999864
Q ss_pred CCCCCHHHHHHHHhcC
Q psy5015 79 NAKLNADDIRTFCKGK 94 (94)
Q Consensus 79 ~~~~~~~~l~~~l~~~ 94 (94)
..+.++|+++|+++
T Consensus 281 --~~~~~el~~~l~~~ 294 (365)
T PRK09188 281 --PADEKSLRARLAGA 294 (365)
T ss_pred --CCCHHHHHHHHHhh
Confidence 46778999999864
No 26
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.90 E-value=4.5e-23 Score=144.53 Aligned_cols=92 Identities=26% Similarity=0.265 Sum_probs=80.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCC-CCceEEEEEEEcCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKENAK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~ 81 (94)
+++||+|||+|+++++|++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++++.+. .+...++++++.++..
T Consensus 437 ~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~ 516 (600)
T PRK08279 437 GDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE 516 (600)
T ss_pred CCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc
Confidence 468999999999999999999999999999999999999999999999999999999998664 3445566666665556
Q ss_pred CCHHHHHHHHhcC
Q psy5015 82 LNADDIRTFCKGK 94 (94)
Q Consensus 82 ~~~~~l~~~l~~~ 94 (94)
.+.++++++|+++
T Consensus 517 ~~~~~l~~~l~~~ 529 (600)
T PRK08279 517 FDLAALAAHLYER 529 (600)
T ss_pred CCHHHHHHHHHhh
Confidence 7888999998763
No 27
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.90 E-value=7e-23 Score=144.29 Aligned_cols=91 Identities=29% Similarity=0.364 Sum_probs=80.4
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++++++++...
T Consensus 471 ~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~ 550 (629)
T PRK10524 471 GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL 550 (629)
T ss_pred CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc
Confidence 35899999999999999999999999999999999999999999999999999999999998888999999998765432
Q ss_pred C--------HHHHHHHHhc
Q psy5015 83 N--------ADDIRTFCKG 93 (94)
Q Consensus 83 ~--------~~~l~~~l~~ 93 (94)
+ .++|++++++
T Consensus 551 ~~~~~~~~~~~~i~~~~~~ 569 (629)
T PRK10524 551 ADREARLALEKEIMALVDS 569 (629)
T ss_pred ccccchHHHHHHHHHHHHh
Confidence 2 3566666654
No 28
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.90 E-value=8.9e-23 Score=146.40 Aligned_cols=90 Identities=28% Similarity=0.394 Sum_probs=79.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh-cCCCeeeEEEEEeeCCCCC-ceEEEEEEEc--C
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAYAYGVPDERMG-EEVGISIKLK--E 78 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~ 78 (94)
+++||+|||+++++++|+++|+||.||+||++|+||+|.|||++|. .||.|.+++|++++++..+ +.++++|+++ +
T Consensus 587 g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~ 666 (728)
T PLN03052 587 GKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPP 666 (728)
T ss_pred CCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCC
Confidence 3459999999999999999999999999999999999999999995 7999999999999988665 7899999987 5
Q ss_pred CCCCCHHHHHHHHh
Q psy5015 79 NAKLNADDIRTFCK 92 (94)
Q Consensus 79 ~~~~~~~~l~~~l~ 92 (94)
+...+.++|+++++
T Consensus 667 g~~~~~~~L~~~i~ 680 (728)
T PLN03052 667 GSNPDLNELKKIFN 680 (728)
T ss_pred CCCCCHHHHHHHHH
Confidence 55566677777654
No 29
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.90 E-value=8.2e-23 Score=141.81 Aligned_cols=90 Identities=36% Similarity=0.536 Sum_probs=84.0
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|+++|.||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++.++...+
T Consensus 415 ~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~ 494 (537)
T PRK13382 415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT 494 (537)
T ss_pred CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999888888999999988776677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 495 ~~~l~~~l~~ 504 (537)
T PRK13382 495 PETLKQHVRD 504 (537)
T ss_pred HHHHHHHHHH
Confidence 7889888875
No 30
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.90 E-value=9.9e-23 Score=141.94 Aligned_cols=92 Identities=34% Similarity=0.590 Sum_probs=84.8
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
.++|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+.|.+||.|.+++|+++++...++.+++++++.++..
T Consensus 430 ~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~ 509 (562)
T PRK05677 430 DSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGET 509 (562)
T ss_pred CCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999998888888999998877666
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++|++++++
T Consensus 510 ~~~~~l~~~~~~ 521 (562)
T PRK05677 510 LTKEQVMEHMRA 521 (562)
T ss_pred CCHHHHHHHHHH
Confidence 788888888875
No 31
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.90 E-value=1.1e-22 Score=140.67 Aligned_cols=91 Identities=37% Similarity=0.547 Sum_probs=83.8
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.+||+|.+++|++.++...++.+++++++.++ .
T Consensus 405 ~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~ 483 (527)
T TIGR02275 405 DAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-A 483 (527)
T ss_pred CcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-C
Confidence 457999999999999999999999999999999999999999999999999999999999998888899999988765 4
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+..+|+++|++
T Consensus 484 ~~~~~l~~~l~~ 495 (527)
T TIGR02275 484 LKAAQLRRFLRE 495 (527)
T ss_pred CCHHHHHHHHHh
Confidence 678899999875
No 32
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.89 E-value=1.4e-22 Score=138.69 Aligned_cols=92 Identities=35% Similarity=0.481 Sum_probs=83.4
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+++|||+|||+++++++|.+++.||.+|+||.+|.+|+|.+||++|.++|.|.++++++.+++..++...+++++.++..
T Consensus 358 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 437 (488)
T PRK09088 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP 437 (488)
T ss_pred cCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999988777788888888877655
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++.++|++
T Consensus 438 ~~~~~l~~~~~~ 449 (488)
T PRK09088 438 LDLERIRSHLST 449 (488)
T ss_pred CCHHHHHHHHHh
Confidence 677888888875
No 33
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.89 E-value=1.1e-22 Score=142.36 Aligned_cols=90 Identities=29% Similarity=0.421 Sum_probs=80.9
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC-
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL- 82 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~- 82 (94)
+|||+|||+|+++++|+++|.||.+|+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++|++.++...
T Consensus 419 ~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 498 (579)
T PLN03102 419 HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK 498 (579)
T ss_pred cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc
Confidence 5899999999999999999999999999999999999999999999999999999999998888899999998765432
Q ss_pred ---------CHHHHHHHHhc
Q psy5015 83 ---------NADDIRTFCKG 93 (94)
Q Consensus 83 ---------~~~~l~~~l~~ 93 (94)
+..+++++|++
T Consensus 499 ~~~~~~~~~~~~~l~~~~~~ 518 (579)
T PLN03102 499 EDRVDKLVTRERDLIEYCRE 518 (579)
T ss_pred ccccccccccHHHHHHHHHh
Confidence 35677887765
No 34
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.89 E-value=8.9e-23 Score=139.04 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=81.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
++|||+|||+|+++ +|.++|.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.. ..
T Consensus 330 ~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~ 406 (458)
T PRK09029 330 DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EA 406 (458)
T ss_pred CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--cc
Confidence 57899999999999 9999999999999999999999999999999999999999999999888889999988763 35
Q ss_pred CHHHHHHHHhcC
Q psy5015 83 NADDIRTFCKGK 94 (94)
Q Consensus 83 ~~~~l~~~l~~~ 94 (94)
+.++|+++|+++
T Consensus 407 ~~~~l~~~~~~~ 418 (458)
T PRK09029 407 AVVNLAEWLQDK 418 (458)
T ss_pred CHHHHHHHHHhh
Confidence 778899888763
No 35
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.89 E-value=1.6e-22 Score=140.51 Aligned_cols=90 Identities=28% Similarity=0.448 Sum_probs=83.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+|+||++|++|+|.+||++|.+||.|.+|+|++.++...++.+++++++.++...+
T Consensus 379 ~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~ 458 (540)
T PRK13388 379 HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD 458 (540)
T ss_pred cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC
Confidence 58999999999999999999999999999999999999999999999999999999999888888888889888877778
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|+.
T Consensus 459 ~~~l~~~l~~ 468 (540)
T PRK13388 459 PDAFAAFLAA 468 (540)
T ss_pred HHHHHHHHHh
Confidence 8888888863
No 36
>PLN02246 4-coumarate--CoA ligase
Probab=99.89 E-value=1.7e-22 Score=139.96 Aligned_cols=92 Identities=23% Similarity=0.314 Sum_probs=84.6
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.++||+|||+++++++|++++.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.++...++.++++++..++..
T Consensus 409 ~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 488 (537)
T PLN02246 409 DKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE 488 (537)
T ss_pred cCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999988888888999999887766
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++|+++|++
T Consensus 489 ~~~~~l~~~l~~ 500 (537)
T PLN02246 489 ITEDEIKQFVAK 500 (537)
T ss_pred CCHHHHHHHHHh
Confidence 778889988875
No 37
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.89 E-value=4.2e-23 Score=146.19 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=68.0
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
|+++|||+|||+|++++||+++|.||.||+||+ +|++|+|.+||++|.+||.|.+|+|++. ..++.++|+|++++
T Consensus 483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~ 558 (651)
T PLN02736 483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDP 558 (651)
T ss_pred hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCH
Confidence 346899999999999999999999999999997 7999999999999999999999999973 34678999999865
No 38
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.89 E-value=2.1e-22 Score=143.62 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=80.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
++|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.++...
T Consensus 363 ~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~ 442 (705)
T PRK06060 363 NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATI 442 (705)
T ss_pred CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCc
Confidence 46899999999999999999999999999999999999999999999999999999999988778889999998765444
Q ss_pred CH---HHHHHHHhc
Q psy5015 83 NA---DDIRTFCKG 93 (94)
Q Consensus 83 ~~---~~l~~~l~~ 93 (94)
+. .+++++|++
T Consensus 443 ~~~~~~~i~~~l~~ 456 (705)
T PRK06060 443 DGSVMRDLHRGLLN 456 (705)
T ss_pred ChHHHHHHHHHHHH
Confidence 43 466666654
No 39
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.89 E-value=2.8e-22 Score=137.17 Aligned_cols=90 Identities=34% Similarity=0.450 Sum_probs=84.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+|+||.+|.+|+|.+||++|.++|+|.++++++.+++..++.++++|+++++...+
T Consensus 370 ~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~ 449 (496)
T PRK06839 370 DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLI 449 (496)
T ss_pred CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999988889999999998877778
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 450 ~~~l~~~~~~ 459 (496)
T PRK06839 450 EKDVIEHCRL 459 (496)
T ss_pred HHHHHHHHHh
Confidence 8889988865
No 40
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.89 E-value=3.3e-22 Score=139.00 Aligned_cols=90 Identities=32% Similarity=0.444 Sum_probs=83.9
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|+++|.||.+|+||++|.+|+|.+||++|.++|+|.+++|+++++...++.+.+++++.++...+
T Consensus 399 ~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~ 478 (542)
T PRK06155 399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALE 478 (542)
T ss_pred CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999887788888899888777788
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
..+++++|++
T Consensus 479 ~~~~~~~~~~ 488 (542)
T PRK06155 479 PVALVRHCEP 488 (542)
T ss_pred HHHHHHHHHh
Confidence 8899988875
No 41
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.89 E-value=3.7e-22 Score=138.30 Aligned_cols=91 Identities=34% Similarity=0.460 Sum_probs=84.3
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
++|||+|||+++++++|.+++.||.+|+||++|++|+|.+||++|.+||.|.+++|++.++...++.+.+++++.++...
T Consensus 415 ~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~ 494 (538)
T TIGR03208 415 AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL 494 (538)
T ss_pred CCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999988788899999999877677
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++.+++++
T Consensus 495 ~~~~l~~~~~~ 505 (538)
T TIGR03208 495 DFAAMVAFLKA 505 (538)
T ss_pred CHHHHHHHHHh
Confidence 88888888863
No 42
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.89 E-value=1.1e-22 Score=144.39 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
+|||+|||+|++|+||+++|.||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+ .++.++|+|++.
T Consensus 492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~ 563 (660)
T PLN02861 492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPD 563 (660)
T ss_pred ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcC
Confidence 689999999999999999999999999996 79999999999999999999999999876 235788888864
No 43
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=3e-23 Score=138.90 Aligned_cols=93 Identities=37% Similarity=0.519 Sum_probs=87.5
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|+.+|||+|||+++++++|++.+.||.+|+|+.+|++|..+|||+.|..||.|.+|++++.++.--|+..+++|+.++.
T Consensus 410 F~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~- 488 (542)
T COG1021 410 FDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP- 488 (542)
T ss_pred cCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC-
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCHHHHHHHHhcC
Q psy5015 81 KLNADDIRTFCKGK 94 (94)
Q Consensus 81 ~~~~~~l~~~l~~~ 94 (94)
..+..+|+++|.++
T Consensus 489 ~~~~~qlr~~L~~~ 502 (542)
T COG1021 489 PLRAAQLRRFLRER 502 (542)
T ss_pred CCCHHHHHHHHHHc
Confidence 37888999998753
No 44
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.89 E-value=2.6e-22 Score=138.94 Aligned_cols=90 Identities=38% Similarity=0.600 Sum_probs=83.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.++|+|.+|+|++.++...++.++++|+..+....+
T Consensus 407 ~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~ 486 (534)
T PRK05852 407 DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT 486 (534)
T ss_pred CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999888888899999987665577
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|.++|++
T Consensus 487 ~~~i~~~~~~ 496 (534)
T PRK05852 487 AEELVQFCRE 496 (534)
T ss_pred HHHHHHHHHH
Confidence 8889888875
No 45
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.89 E-value=3.4e-22 Score=138.37 Aligned_cols=91 Identities=30% Similarity=0.476 Sum_probs=82.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC--
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-- 80 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-- 80 (94)
+++||+|||+++++++|++++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.++...++.++++++++++.
T Consensus 414 ~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~ 493 (546)
T PRK08314 414 GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG 493 (546)
T ss_pred CCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC
Confidence 456999999999999999999999999999999999999999999999999999999999888888999999987653
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.++++++|++
T Consensus 494 ~~~~~~l~~~~~~ 506 (546)
T PRK08314 494 KTTEEEIIAWARE 506 (546)
T ss_pred CCCHHHHHHHHHH
Confidence 3456788888875
No 46
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.88 E-value=1.9e-22 Score=140.06 Aligned_cols=92 Identities=30% Similarity=0.399 Sum_probs=84.6
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+|||+|||+++++++|++++.||.+|+||++|++|+|.+||++|.++|.|.+++|+++++...++.++++|++.++..
T Consensus 414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 493 (546)
T PLN02330 414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK 493 (546)
T ss_pred cCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999998888889999999887666
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++|++++++
T Consensus 494 ~~~~~l~~~~~~ 505 (546)
T PLN02330 494 ESEEDILNFVAA 505 (546)
T ss_pred CCHHHHHHHHHH
Confidence 777888888875
No 47
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.88 E-value=5.2e-22 Score=134.05 Aligned_cols=89 Identities=29% Similarity=0.432 Sum_probs=81.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+++++++|++++.||.|++||++|++|+|.+||+++.++|+|.+++|++.+++..++.+.++++..+ ..
T Consensus 289 ~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~ 366 (414)
T PRK08308 289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EI 366 (414)
T ss_pred CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CC
Confidence 3689999999999999999999999999999999999999999999999999999999998888888888888654 46
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++++++|++
T Consensus 367 ~~~~l~~~l~~ 377 (414)
T PRK08308 367 DPVQLREWCIQ 377 (414)
T ss_pred CHHHHHHHHHH
Confidence 77888888875
No 48
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.88 E-value=4e-22 Score=138.36 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=83.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.++++++.++...++.++++|+..++...+
T Consensus 408 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 487 (539)
T PRK07008 408 DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVT 487 (539)
T ss_pred CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccC
Confidence 58999999999999999999999999999999999999999999999999999999999887788888888887766677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 488 ~~~l~~~~~~ 497 (539)
T PRK07008 488 REELLAFYEG 497 (539)
T ss_pred HHHHHHHHHh
Confidence 8889888875
No 49
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.88 E-value=4.1e-22 Score=138.03 Aligned_cols=88 Identities=25% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||+++++ +|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.+.++++.... ..
T Consensus 394 ~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-~~ 471 (525)
T PRK05851 394 PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR-GP 471 (525)
T ss_pred CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEec-Cc
Confidence 46899999999997 79999999999999999999999999999999999999999999988777777666654321 23
Q ss_pred CHHHHHHHHh
Q psy5015 83 NADDIRTFCK 92 (94)
Q Consensus 83 ~~~~l~~~l~ 92 (94)
+.++++++|+
T Consensus 472 ~~~~~~~~~~ 481 (525)
T PRK05851 472 DEAGARSEVV 481 (525)
T ss_pred chHHHHHHHH
Confidence 4444444443
No 50
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.88 E-value=8.5e-22 Score=136.38 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.++||+|||+|+++++|.+++.||.+++||++|.+|+|.+||+.|.++|.|.+++|++.+. .++..+++++++.++..
T Consensus 403 ~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~~ 481 (540)
T PRK06164 403 TDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGAS 481 (540)
T ss_pred cCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999874 45567889998877766
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++.++|++
T Consensus 482 ~~~~~l~~~~~~ 493 (540)
T PRK06164 482 PDEAGLMAACRE 493 (540)
T ss_pred CCHHHHHHHHHh
Confidence 788889888875
No 51
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.88 E-value=1.1e-21 Score=136.09 Aligned_cols=92 Identities=47% Similarity=0.820 Sum_probs=84.3
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.++||+|||+++++++|++++.||.+++||++|.+|+|.+||++|.++|.|.+++|++.++...++.+++++++.++..
T Consensus 425 ~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 504 (558)
T PRK12583 425 DEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA 504 (558)
T ss_pred CCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999998877888999999887666
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++++++|++
T Consensus 505 ~~~~~i~~~~~~ 516 (558)
T PRK12583 505 ASEEELREFCKA 516 (558)
T ss_pred CCHHHHHHHHHh
Confidence 778888888765
No 52
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.88 E-value=7.6e-22 Score=136.19 Aligned_cols=90 Identities=34% Similarity=0.577 Sum_probs=83.3
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.++|.|.++++++.++...++.+.++|++.++...+
T Consensus 395 ~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~ 474 (516)
T PRK13383 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD 474 (516)
T ss_pred cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999888888999999988776677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.+++++++++
T Consensus 475 ~~~l~~~~~~ 484 (516)
T PRK13383 475 AAQLRDYLKD 484 (516)
T ss_pred HHHHHHHHHH
Confidence 7888888775
No 53
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.88 E-value=1.2e-21 Score=136.16 Aligned_cols=90 Identities=33% Similarity=0.487 Sum_probs=83.3
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.++++|++|.+|+|.+||++|.++|.|.+++|++.+++..++.+++++++.++...+
T Consensus 418 ~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~ 497 (547)
T PRK13295 418 DGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLD 497 (547)
T ss_pred CCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999888888999999988776677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.+++.+++++
T Consensus 498 ~~~l~~~~~~ 507 (547)
T PRK13295 498 FEEMVEFLKA 507 (547)
T ss_pred HHHHHHHHHh
Confidence 7888888764
No 54
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.88 E-value=8.1e-22 Score=135.14 Aligned_cols=90 Identities=36% Similarity=0.489 Sum_probs=83.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|++++.||.|++||++|.+++|.+||+.|.++|+|.+++|++.+++..++.+.+++++.+....+
T Consensus 372 ~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 451 (497)
T PRK06145 372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT 451 (497)
T ss_pred CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999888888899999988766677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 452 ~~~l~~~~~~ 461 (497)
T PRK06145 452 LEALDRHCRQ 461 (497)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 55
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.88 E-value=1.4e-21 Score=134.06 Aligned_cols=91 Identities=41% Similarity=0.622 Sum_probs=84.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+++++++|.+++.||.+|++|++|.+++|.+||++|.++|+|.++++++.++...++.+.++++.+++...
T Consensus 390 ~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 469 (513)
T PRK07656 390 ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL 469 (513)
T ss_pred cCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999888888889999998876677
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|+++|++
T Consensus 470 ~~~~l~~~~~~ 480 (513)
T PRK07656 470 TEEELIAYCRE 480 (513)
T ss_pred CHHHHHHHHHh
Confidence 88889888875
No 56
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.88 E-value=9.1e-22 Score=137.31 Aligned_cols=90 Identities=32% Similarity=0.445 Sum_probs=80.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+|+||++|++|+|.+||+.|.+||.|.+++|++.+++..++.+++++++.++...+
T Consensus 431 ~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~ 510 (570)
T PRK04319 431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS 510 (570)
T ss_pred CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999988899999999988764433
Q ss_pred H---HHHHHHHhc
Q psy5015 84 A---DDIRTFCKG 93 (94)
Q Consensus 84 ~---~~l~~~l~~ 93 (94)
. ++|+++|++
T Consensus 511 ~~~~~~l~~~~~~ 523 (570)
T PRK04319 511 EELKEEIRGFVKK 523 (570)
T ss_pred HHHHHHHHHHHHH
Confidence 2 567777764
No 57
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.88 E-value=1e-21 Score=136.82 Aligned_cols=91 Identities=27% Similarity=0.474 Sum_probs=83.9
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|+++++||.+|+||++|.+|+|.+||+++.++|.|.++++++.++...++.+++++++.++...+
T Consensus 441 dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~ 520 (567)
T PRK06178 441 DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT 520 (567)
T ss_pred CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC
Confidence 58999999999999999999999999999999999999999999999999999999998887788899999988776678
Q ss_pred HHHHHHHHhcC
Q psy5015 84 ADDIRTFCKGK 94 (94)
Q Consensus 84 ~~~l~~~l~~~ 94 (94)
.++|+++++++
T Consensus 521 ~~~l~~~~~~~ 531 (567)
T PRK06178 521 AAALQAWCREN 531 (567)
T ss_pred HHHHHHHHHhc
Confidence 88899888763
No 58
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.88 E-value=1.4e-21 Score=134.47 Aligned_cols=91 Identities=35% Similarity=0.659 Sum_probs=83.8
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+.+||+|||+++++++|++++.||.++++|.+|.+|+|.+||+++.++|.|.++++++.+++..++.+.+++++.++...
T Consensus 406 ~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 485 (533)
T PRK07798 406 GVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP 485 (533)
T ss_pred CCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999888778889999998877667
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++++++++
T Consensus 486 ~~~~l~~~l~~ 496 (533)
T PRK07798 486 DLAELRAHCRS 496 (533)
T ss_pred CHHHHHHHHhh
Confidence 88889888875
No 59
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.88 E-value=1.2e-21 Score=135.75 Aligned_cols=90 Identities=36% Similarity=0.512 Sum_probs=83.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.++++|++|.+|+|.+||++|.++|.|.+++|++.+++..++.+++++++.++...+
T Consensus 415 ~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~ 494 (545)
T PRK08162 415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT 494 (545)
T ss_pred CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999998887788899999988776677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 495 ~~~l~~~~~~ 504 (545)
T PRK08162 495 EEEIIAHCRE 504 (545)
T ss_pred HHHHHHHHHH
Confidence 8889888865
No 60
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.87 E-value=1.4e-21 Score=135.02 Aligned_cols=90 Identities=33% Similarity=0.475 Sum_probs=82.9
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|++++.||.||++|++|.+|+|.+||++|.++|.|.+++|++.+++..++.++++++..++...+
T Consensus 393 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (528)
T PRK07470 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVD 472 (528)
T ss_pred CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999887788888888887766678
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 473 ~~~~~~~l~~ 482 (528)
T PRK07470 473 EAELLAWLDG 482 (528)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 61
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.87 E-value=1.3e-21 Score=136.41 Aligned_cols=90 Identities=38% Similarity=0.670 Sum_probs=83.6
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.||++|++|.+|+|.+||+++.++|.|.++++++.++...++.+++++++.++...+
T Consensus 444 ~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~ 523 (573)
T PRK05605 444 DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD 523 (573)
T ss_pred CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999888888999999988776778
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|++++++
T Consensus 524 ~~~l~~~~~~ 533 (573)
T PRK05605 524 PEGLRAYCRE 533 (573)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 62
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.87 E-value=1.1e-21 Score=136.02 Aligned_cols=90 Identities=39% Similarity=0.531 Sum_probs=82.5
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.++||+|||+++++++|++++.||.+|++|++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++
T Consensus 406 ~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~-- 483 (536)
T PRK10946 406 DANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP-- 483 (536)
T ss_pred ccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--
Confidence 457999999999999999999999999999999999999999999999999999999999988888889999988764
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++++++++
T Consensus 484 ~~~~~l~~~~~~ 495 (536)
T PRK10946 484 LKAVQLRRFLRE 495 (536)
T ss_pred CCHHHHHHHHHh
Confidence 677888888864
No 63
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.87 E-value=1.2e-21 Score=140.15 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=77.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+|++++||+++|.||.||+||++|++|+|.|||+++.+|+.+.++++++.+++..++.+++++. +...+
T Consensus 590 ~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~ 666 (718)
T PRK08043 590 RGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELT 666 (718)
T ss_pred CCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccC
Confidence 689999999999999999999999999999999999999999999999888888888888878888877653 33467
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 667 ~~~l~~~~~~ 676 (718)
T PRK08043 667 REKLQQYARE 676 (718)
T ss_pred HHHHHHHHHh
Confidence 7889988875
No 64
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.87 E-value=1.6e-21 Score=134.07 Aligned_cols=90 Identities=36% Similarity=0.504 Sum_probs=79.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|++++.||.|++||++|.+|+|.+||++|.+||.|.++++++.+++..++.+++++++.++...+
T Consensus 378 ~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~ 457 (501)
T PRK13390 378 PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS 457 (501)
T ss_pred CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999988888999999887654333
Q ss_pred ---HHHHHHHHhc
Q psy5015 84 ---ADDIRTFCKG 93 (94)
Q Consensus 84 ---~~~l~~~l~~ 93 (94)
.++|++++++
T Consensus 458 ~~~~~~l~~~~~~ 470 (501)
T PRK13390 458 DELARELIDYTRS 470 (501)
T ss_pred hhhHHHHHHHHHH
Confidence 3467776654
No 65
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.87 E-value=6.9e-22 Score=140.63 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=64.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
+|||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+++|++.... ..++|+|++..
T Consensus 495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~ 567 (666)
T PLN02614 495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQ 567 (666)
T ss_pred cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCH
Confidence 689999999999999999999999999996 7999999999999999999999999987532 25888888643
No 66
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.87 E-value=2.2e-21 Score=133.09 Aligned_cols=91 Identities=38% Similarity=0.538 Sum_probs=83.6
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.++||+|||+++++++|.+++.||.||+||++|.+|+|.+||+++.++++|.++++++.++...++.++++++..++...
T Consensus 375 ~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 454 (504)
T PRK07514 375 ADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAAL 454 (504)
T ss_pred cCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999888778889999998876667
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++++++++
T Consensus 455 ~~~~l~~~~~~ 465 (504)
T PRK07514 455 DEAAILAALKG 465 (504)
T ss_pred CHHHHHHHHHh
Confidence 77888888775
No 67
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.87 E-value=1.1e-21 Score=136.97 Aligned_cols=91 Identities=26% Similarity=0.398 Sum_probs=82.3
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC-
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK- 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~- 81 (94)
.+|||+|||+++++++|.++|.||.+|+||++|.+|+|.+||++|.+||.|.+++|++.++...++.+++++++.++..
T Consensus 428 ~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~ 507 (576)
T PRK05620 428 ADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP 507 (576)
T ss_pred cCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999888888999998877643
Q ss_pred --CCHHHHHHHHhc
Q psy5015 82 --LNADDIRTFCKG 93 (94)
Q Consensus 82 --~~~~~l~~~l~~ 93 (94)
.+.++|+++|++
T Consensus 508 ~~~~~~~l~~~l~~ 521 (576)
T PRK05620 508 TRETAERLRDQLRD 521 (576)
T ss_pred ccccHHHHHHHHHh
Confidence 346788888875
No 68
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.87 E-value=2.6e-21 Score=134.30 Aligned_cols=92 Identities=27% Similarity=0.365 Sum_probs=84.8
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+|||+|||+++++++|++++.||.+|+|+++|.+|+|.+||+++.+||.|.+|+|++.+++..++.+.+++++.++..
T Consensus 407 ~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 486 (542)
T PRK06018 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET 486 (542)
T ss_pred cCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999998887888999999888777
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++++++++
T Consensus 487 ~~~~~l~~~~~~ 498 (542)
T PRK06018 487 ATREEILKYMDG 498 (542)
T ss_pred CCHHHHHHHHHh
Confidence 788888888875
No 69
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.87 E-value=1.8e-21 Score=135.53 Aligned_cols=90 Identities=34% Similarity=0.509 Sum_probs=83.7
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|.+++.||.||+||++|.+|+|.+||++|.++|.|.+++|++.++...++.++++++..++...+
T Consensus 430 ~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~ 509 (563)
T PRK06710 430 DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS 509 (563)
T ss_pred cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999888888999999988876677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.+++++++++
T Consensus 510 ~~~l~~~~~~ 519 (563)
T PRK06710 510 EEELNQFARK 519 (563)
T ss_pred HHHHHHHHHH
Confidence 8888888865
No 70
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.87 E-value=2e-21 Score=132.92 Aligned_cols=89 Identities=31% Similarity=0.440 Sum_probs=80.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+++||+|||+++++++|++++.||. |+++|++|.+|+|.+||++|.++|.|.+++|++.++...++.+++++++.+ .
T Consensus 348 ~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~ 425 (471)
T PRK07787 348 ADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD--D 425 (471)
T ss_pred CCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC--C
Confidence 4789999999999999999999996 899999999999999999999999999999999988877889999988743 3
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++.++|++
T Consensus 426 ~~~~~l~~~l~~ 437 (471)
T PRK07787 426 VAADELIDFVAQ 437 (471)
T ss_pred CCHHHHHHHHHh
Confidence 677788888765
No 71
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.87 E-value=1e-21 Score=138.23 Aligned_cols=88 Identities=26% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeee--EEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
++||+|||+|+++ +|+|+|.||.||+||++|++|+|.|||++|.+ ||.|.+ +++++.+++. ++.++++++++++.
T Consensus 475 ~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~ 552 (612)
T PRK12476 475 GTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT 552 (612)
T ss_pred CCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc
Confidence 4699999999985 99999999999999999999999999999985 899999 6677777765 78889999887764
Q ss_pred C-CCHHHHHHHHhc
Q psy5015 81 K-LNADDIRTFCKG 93 (94)
Q Consensus 81 ~-~~~~~l~~~l~~ 93 (94)
. .+.++|.++|++
T Consensus 553 ~~~~~~~l~~~~~~ 566 (612)
T PRK12476 553 SRADPAPAIDAIRA 566 (612)
T ss_pred ccccHHHHHHHHHH
Confidence 2 566666666653
No 72
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.87 E-value=1.8e-21 Score=133.43 Aligned_cols=87 Identities=36% Similarity=0.526 Sum_probs=78.4
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|+|.+++|++.+++..++.+++++.. ..
T Consensus 359 ~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~ 434 (487)
T PRK07638 359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SA 434 (487)
T ss_pred cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CC
Confidence 46899999999999999999999999999999999999999999999999999999999988788888888763 35
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++++++|++
T Consensus 435 ~~~~l~~~~~~ 445 (487)
T PRK07638 435 TKQQLKSFCLQ 445 (487)
T ss_pred CHHHHHHHHHH
Confidence 66778887764
No 73
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.87 E-value=3.2e-21 Score=134.40 Aligned_cols=91 Identities=37% Similarity=0.665 Sum_probs=81.4
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+++|||+|||+++++++|.++|.||.+++||++|.+|+|.+||+.|.+||.|.++++++.++...++.+.+++++.+. .
T Consensus 438 ~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~ 516 (562)
T PRK12492 438 DAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-G 516 (562)
T ss_pred cCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-C
Confidence 357899999999999999999999999999999999999999999999999999999999888788888888887543 3
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++++++++
T Consensus 517 ~~~~~i~~~~~~ 528 (562)
T PRK12492 517 LSVEELKAYCKE 528 (562)
T ss_pred CCHHHHHHHHHH
Confidence 567788888765
No 74
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.87 E-value=4e-21 Score=132.28 Aligned_cols=91 Identities=34% Similarity=0.527 Sum_probs=83.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.++||+|||+++++++|.+++.||.+|+||++|.+|+|.+||+.|.++|.|.++++++.++...++.+++++++.++...
T Consensus 377 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 456 (509)
T PRK12406 377 RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL 456 (509)
T ss_pred CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999988778889999998776666
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|++++++
T Consensus 457 ~~~~l~~~l~~ 467 (509)
T PRK12406 457 DEADIRAQLKA 467 (509)
T ss_pred CHHHHHHHHHH
Confidence 77888888765
No 75
>PRK08315 AMP-binding domain protein; Validated
Probab=99.87 E-value=3.9e-21 Score=133.45 Aligned_cols=91 Identities=53% Similarity=0.895 Sum_probs=83.3
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.++||+|||+++++++|.+++.||.++++|++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...
T Consensus 425 ~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 504 (559)
T PRK08315 425 ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATL 504 (559)
T ss_pred CCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999888777888899988776667
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++++++++
T Consensus 505 ~~~~l~~~l~~ 515 (559)
T PRK08315 505 TEEDVRDFCRG 515 (559)
T ss_pred CHHHHHHHHHh
Confidence 78888888875
No 76
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.87 E-value=2.3e-21 Score=134.92 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=69.8
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeee------EEEEEeeCCCCCceEEEEEE
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE------AYAYGVPDERMGEEVGISIK 75 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~ 75 (94)
+++|||+|||+|+++++|+++|.||.+|+||++|++|+|.|||++|.+||+|.+ ++|++.++. ...++++++
T Consensus 407 ~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~ 484 (539)
T PRK06334 407 GGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTT 484 (539)
T ss_pred CCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEe
Confidence 357899999999999999999999999999999999999999999999999987 677766643 223444444
Q ss_pred EcCCCCCCHHHHHHHHhc
Q psy5015 76 LKENAKLNADDIRTFCKG 93 (94)
Q Consensus 76 ~~~~~~~~~~~l~~~l~~ 93 (94)
.. .+.++++++|++
T Consensus 485 ~~----~~~~~~~~~l~~ 498 (539)
T PRK06334 485 FP----TSISEVNDILKN 498 (539)
T ss_pred cc----CChHHHHHHHHh
Confidence 21 356778888765
No 77
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=99.87 E-value=1.5e-21 Score=140.50 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=65.8
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
|+.+|||+|||+|++++||+|+|+||.+|+||+ +|++|+|.+||+++.+||.|.+|+|++.. ....++|+|++.
T Consensus 566 f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d 640 (746)
T PTZ00342 566 FTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVD 640 (746)
T ss_pred cCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECC
Confidence 456899999999999999999999999999995 79999999999999999999999999863 233688888864
No 78
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.87 E-value=2.2e-21 Score=145.75 Aligned_cols=75 Identities=21% Similarity=0.099 Sum_probs=70.3
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
+++||+|||+|++++||.++|.||.||+||++|+||+|.|||++|.+||.|.+++|++.++...+..+++++++.
T Consensus 676 ~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~ 750 (1389)
T TIGR03443 676 RDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQ 750 (1389)
T ss_pred ccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEecc
Confidence 368999999999999999999999999999999999999999999999999999999888877778899999876
No 79
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.86 E-value=4.1e-21 Score=131.90 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=82.7
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.++++++..++...+
T Consensus 393 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 472 (515)
T TIGR03098 393 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD 472 (515)
T ss_pred ccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCC
Confidence 45899999999999999999999999999999999999999999999999999999999888889999998876666678
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 473 ~~~l~~~l~~ 482 (515)
T TIGR03098 473 RAALLAECRA 482 (515)
T ss_pred HHHHHHHHHh
Confidence 8888888875
No 80
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.86 E-value=4.2e-21 Score=131.97 Aligned_cols=90 Identities=37% Similarity=0.516 Sum_probs=83.0
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+|+++++|.+++.||.+++||++|.+|+|.+||+.|.++|.|.++++++.+++..++.+++++++.++...+
T Consensus 394 ~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (523)
T PRK08316 394 GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVT 473 (523)
T ss_pred CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999888888999999988766677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.+++.+++++
T Consensus 474 ~~~l~~~~~~ 483 (523)
T PRK08316 474 EDELIAHCRA 483 (523)
T ss_pred HHHHHHHHHH
Confidence 7788887764
No 81
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.86 E-value=4.4e-21 Score=133.42 Aligned_cols=91 Identities=40% Similarity=0.595 Sum_probs=80.0
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+++|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|..+|.|.+++|++.++...++.+.++++.. +..
T Consensus 434 ~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~ 512 (560)
T PRK08751 434 DADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPA 512 (560)
T ss_pred ccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCC
Confidence 3578999999999999999999999999999999999999999999999999999999999887787777777654 345
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+++++++++
T Consensus 513 ~~~~~l~~~~~~ 524 (560)
T PRK08751 513 LTAEDVKAHARA 524 (560)
T ss_pred CCHHHHHHHHHH
Confidence 677788887764
No 82
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.86 E-value=8e-21 Score=131.16 Aligned_cols=90 Identities=34% Similarity=0.571 Sum_probs=83.1
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|++++.||.+++++++|.+|+|.+||++|.++|+|.+++|++.+++..++.+.+++++.+....+
T Consensus 392 ~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 471 (524)
T PRK06188 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD 471 (524)
T ss_pred CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999998887788999999988766677
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 472 ~~~l~~~~~~ 481 (524)
T PRK06188 472 AAELQAHVKE 481 (524)
T ss_pred HHHHHHHHHH
Confidence 7888888865
No 83
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.86 E-value=4.9e-21 Score=133.04 Aligned_cols=76 Identities=34% Similarity=0.522 Sum_probs=70.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 79 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 79 (94)
+|||+|||+|+++++|++++.||.+++||++|.+|+|.+||++|..||.|.+|+|++.++...++.++++++..+.
T Consensus 401 ~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~ 476 (540)
T PRK05857 401 DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE 476 (540)
T ss_pred CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC
Confidence 5899999999999999999999999999999999999999999999999999999999987777788888876543
No 84
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.85 E-value=5.1e-21 Score=133.87 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=76.6
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCee--eEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
.++||+|||++++ ++|+++|+||.||+||++|++|+|.+||++|++||.|. ++++++.+++. ++.++++++..++.
T Consensus 437 ~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~ 514 (579)
T PRK09192 437 ADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISD 514 (579)
T ss_pred CCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCC
Confidence 4789999999999 89999999999999999999999999999999999998 89999988875 45788888776554
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.++|++++++
T Consensus 515 ~~~~~~l~~~~~~ 527 (579)
T PRK09192 515 EERRGQLIHALAA 527 (579)
T ss_pred hHHHHHHHHHHHH
Confidence 5566677777654
No 85
>PLN02479 acetate-CoA ligase
Probab=99.85 E-value=5.8e-21 Score=133.31 Aligned_cols=90 Identities=41% Similarity=0.551 Sum_probs=79.3
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC--
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-- 81 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-- 81 (94)
+|||+|||+++++++|+++|.||.+|+||++|.+|+|.+||++|.+||.|.+++|++.++...++.+++++++.++..
T Consensus 429 ~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 508 (567)
T PLN02479 429 NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKS 508 (567)
T ss_pred CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccccc
Confidence 579999999999999999999999999999999999999999999999999999999988777888999999876532
Q ss_pred ---CCHHHHHHHHhc
Q psy5015 82 ---LNADDIRTFCKG 93 (94)
Q Consensus 82 ---~~~~~l~~~l~~ 93 (94)
...++|.+++++
T Consensus 509 ~~~~~~~~l~~~~~~ 523 (567)
T PLN02479 509 DEAALAEDIMKFCRE 523 (567)
T ss_pred chhhhHHHHHHHHHh
Confidence 234567777654
No 86
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.85 E-value=7.2e-21 Score=135.99 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=63.5
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
|||+|||+|++++||+++|.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+. ...++++|++.+
T Consensus 535 ~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~ 606 (696)
T PLN02387 535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPSQ 606 (696)
T ss_pred ceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeCH
Confidence 49999999999999999999999999997 699999999999999999999999998653 235778888643
No 87
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.85 E-value=1.2e-20 Score=129.64 Aligned_cols=91 Identities=38% Similarity=0.611 Sum_probs=79.9
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+++++++|.+++.||.|+++|++|.+|+|.+||.+|.++|.|.++++++..++..++.++++++++++...
T Consensus 367 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 446 (502)
T PRK08276 367 PHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADA 446 (502)
T ss_pred CCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCC
Confidence 35999999999999999999999999999999999999999999999999999999999988888899999998765443
Q ss_pred CH---HHHHHHHhc
Q psy5015 83 NA---DDIRTFCKG 93 (94)
Q Consensus 83 ~~---~~l~~~l~~ 93 (94)
+. +++++++++
T Consensus 447 ~~~~~~~i~~~~~~ 460 (502)
T PRK08276 447 GDALAAELIAWLRG 460 (502)
T ss_pred ChhhHHHHHHHHHh
Confidence 33 356666654
No 88
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.85 E-value=1.8e-20 Score=130.34 Aligned_cols=91 Identities=43% Similarity=0.692 Sum_probs=81.2
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
..+|||+|||+++++++|.+++.||.+++||++|.+|+|.+||+++.++|+|.++++++.++...++.++++++..+ ..
T Consensus 432 ~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~ 510 (557)
T PRK07059 432 TADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PA 510 (557)
T ss_pred ccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CC
Confidence 35799999999999999999999999999999999999999999999999999999999998888888888888654 34
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++++++|++
T Consensus 511 ~~~~~l~~~~~~ 522 (557)
T PRK07059 511 LTEEDVKAFCKE 522 (557)
T ss_pred CCHHHHHHHHHH
Confidence 667788887765
No 89
>PRK12316 peptide synthase; Provisional
Probab=99.85 E-value=8.3e-21 Score=153.52 Aligned_cols=90 Identities=24% Similarity=0.247 Sum_probs=82.6
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+|++++||.++|+||.|++||++|+||+|.|||++|.++|+|.+++|++.++. .++.++++|++.++...
T Consensus 2379 ~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~ 2457 (5163)
T PRK12316 2379 GERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAED 2457 (5163)
T ss_pred CCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCcc
Confidence 45799999999999999999999999999999999999999999999999999999988765 77889999998877677
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|+++|++
T Consensus 2458 ~~~~l~~~l~~ 2468 (5163)
T PRK12316 2458 LLAELRAWLAA 2468 (5163)
T ss_pred CHHHHHHHHHh
Confidence 88889998875
No 90
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.85 E-value=1.8e-20 Score=129.21 Aligned_cols=90 Identities=37% Similarity=0.586 Sum_probs=79.9
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC-
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL- 82 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~- 82 (94)
++||+|||+++++++|.+++.||.+|++|++|.+|+|.+||++|.+||.|.++++++.++...++.+++++++.++...
T Consensus 381 ~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (511)
T PRK13391 381 GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPG 460 (511)
T ss_pred CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999988888889888887664332
Q ss_pred --CHHHHHHHHhc
Q psy5015 83 --NADDIRTFCKG 93 (94)
Q Consensus 83 --~~~~l~~~l~~ 93 (94)
..++++++|++
T Consensus 461 ~~~~~~l~~~~~~ 473 (511)
T PRK13391 461 PALAAELIAFCRQ 473 (511)
T ss_pred cchHHHHHHHHHh
Confidence 24678888765
No 91
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.85 E-value=1.4e-20 Score=139.38 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=78.0
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
++|||+|||++++++||++++.||.||+||++|++|+|.|||+++.+||.+.+++|++.+++..++.+++++. +...
T Consensus 1008 ~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~ 1084 (1140)
T PRK06814 1008 ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDA 1084 (1140)
T ss_pred CCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCc
Confidence 4789999999999999999999999999999999999999999999999999999999998888888776654 2345
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++.+++++
T Consensus 1085 ~~~~l~~~~~~ 1095 (1140)
T PRK06814 1085 TRAAFLAHAKA 1095 (1140)
T ss_pred CHHHHHHHHHH
Confidence 67788888764
No 92
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.85 E-value=1.5e-20 Score=130.45 Aligned_cols=91 Identities=34% Similarity=0.602 Sum_probs=81.6
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC-CC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-NA 80 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~ 80 (94)
+.++||+|||+++++++|++++.||.+|+|+.+|.+|+|.+||++|.++|+|.++++++.+++..++.+++++++.+ ..
T Consensus 407 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 486 (547)
T PRK06087 407 DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH 486 (547)
T ss_pred CCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999998888889999999875 34
Q ss_pred CCCHHHHHHHHh
Q psy5015 81 KLNADDIRTFCK 92 (94)
Q Consensus 81 ~~~~~~l~~~l~ 92 (94)
..+.+++.++++
T Consensus 487 ~~~~~~~~~~~~ 498 (547)
T PRK06087 487 SLTLEEVVAFFS 498 (547)
T ss_pred CCCHHHHHHHHH
Confidence 466777877764
No 93
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.85 E-value=2e-20 Score=139.67 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEee------CCCCCceEEEEEEE
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP------DERMGEEVGISIKL 76 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~------~~~~~~~~~~~v~~ 76 (94)
+++||+|||+|+++++|.++++||.|++||++|++|+|.|||++|.+||+|.+++|+... .......++++++.
T Consensus 835 ~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~ 914 (1296)
T PRK10252 835 GERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVS 914 (1296)
T ss_pred CCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEc
Confidence 456999999999999999999999999999999999999999999999999999877653 11122478899998
Q ss_pred cCCCCCCHHHHHHHHhc
Q psy5015 77 KENAKLNADDIRTFCKG 93 (94)
Q Consensus 77 ~~~~~~~~~~l~~~l~~ 93 (94)
.++...+.++|++++++
T Consensus 915 ~~~~~~~~~~l~~~l~~ 931 (1296)
T PRK10252 915 QSGLPLDTSALQAQLRE 931 (1296)
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 77666778889988875
No 94
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.84 E-value=3e-20 Score=128.92 Aligned_cols=90 Identities=40% Similarity=0.583 Sum_probs=81.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC-CC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KL 82 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~ 82 (94)
++||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.+++++++.++. ..
T Consensus 420 ~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 499 (541)
T TIGR03205 420 GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPF 499 (541)
T ss_pred cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcC
Confidence 47999999999999999999999999999999999999999999999999999999999887788899999987654 35
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++++++++
T Consensus 500 ~~~~l~~~~~~ 510 (541)
T TIGR03205 500 SLDELRAFLAG 510 (541)
T ss_pred CHHHHHHHHHh
Confidence 67888888765
No 95
>PRK12316 peptide synthase; Provisional
Probab=99.84 E-value=1.3e-20 Score=152.51 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=80.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+|++++||.++|+||.|++||++|+||+|.|||++|.+||.|.+|+|++.+ ++.++++|++.++...
T Consensus 884 ~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~ 959 (5163)
T PRK12316 884 GERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGD 959 (5163)
T ss_pred CCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCC
Confidence 567999999999999999999999999999999999999999999999999999999886 5689999998876667
Q ss_pred CHHHHHHHHhcC
Q psy5015 83 NADDIRTFCKGK 94 (94)
Q Consensus 83 ~~~~l~~~l~~~ 94 (94)
..++|+++|+++
T Consensus 960 ~~~~l~~~l~~~ 971 (5163)
T PRK12316 960 WREALKAHLAAS 971 (5163)
T ss_pred CHHHHHHHHHhh
Confidence 788899988753
No 96
>PRK12467 peptide synthase; Provisional
Probab=99.84 E-value=1.4e-20 Score=150.53 Aligned_cols=91 Identities=22% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+|++++||+++|+||.|++||++|+||+|.|||++|.++|+|.+|+|++... ..++.+++++++......
T Consensus 3469 g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~ 3547 (3956)
T PRK12467 3469 GGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGD 3547 (3956)
T ss_pred CceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcc
Confidence 4578999999999999999999999999999999999999999999999999999998754 467789999998765556
Q ss_pred CHHHHHHHHhcC
Q psy5015 83 NADDIRTFCKGK 94 (94)
Q Consensus 83 ~~~~l~~~l~~~ 94 (94)
..++++++|+++
T Consensus 3548 ~~~~l~~~l~~~ 3559 (3956)
T PRK12467 3548 WRETLRDHLAAS 3559 (3956)
T ss_pred cHHHHHHHHhcc
Confidence 678888888753
No 97
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.84 E-value=5.3e-20 Score=126.22 Aligned_cols=90 Identities=43% Similarity=0.667 Sum_probs=83.0
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|.+++.||.++++|++|.+++|.+||+.|.++|+|.++++++.+++..++.+.+++++.++...+
T Consensus 394 ~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (521)
T PRK06187 394 GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD 473 (521)
T ss_pred CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999998887788999999988877778
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.+++++++++
T Consensus 474 ~~~l~~~l~~ 483 (521)
T PRK06187 474 AKELRAFLRG 483 (521)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 98
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.84 E-value=5.9e-20 Score=125.98 Aligned_cols=90 Identities=16% Similarity=0.011 Sum_probs=73.5
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEee-CCCCCceEEEEEEEcCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP-DERMGEEVGISIKLKENAK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+||+|||+|+++++ ++++.||.+|+||++|.+|+|.+||+.+.++|.|.++++++.. .....+.+++++++.+...
T Consensus 372 ~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~ 450 (502)
T TIGR01734 372 GQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDF 450 (502)
T ss_pred CcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccc
Confidence 3469999999999976 9999999999999999999999999999999999999999876 3445677888888765432
Q ss_pred CCH----HHHHHHHhc
Q psy5015 82 LNA----DDIRTFCKG 93 (94)
Q Consensus 82 ~~~----~~l~~~l~~ 93 (94)
... .++++++++
T Consensus 451 ~~~~~~~~~i~~~~~~ 466 (502)
T TIGR01734 451 EKEFQLTKAIKKELKK 466 (502)
T ss_pred ccchhhHHHHHHHHhh
Confidence 221 455666553
No 99
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.84 E-value=5.4e-20 Score=127.75 Aligned_cols=90 Identities=34% Similarity=0.510 Sum_probs=80.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC-CC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KL 82 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~ 82 (94)
++||+|||+++++++|.+++.||.+|+||++|.+|+|.+||++|.++|.|.+++|++.++...++.+++++++.+.. ..
T Consensus 398 ~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 477 (542)
T PRK07786 398 GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAAL 477 (542)
T ss_pred CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999998877788888888877543 35
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
..+++.++|++
T Consensus 478 ~~~~l~~~l~~ 488 (542)
T PRK07786 478 TLEDLAEFLTD 488 (542)
T ss_pred CHHHHHHHHHh
Confidence 66788888765
No 100
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.84 E-value=4.4e-20 Score=124.69 Aligned_cols=89 Identities=30% Similarity=0.435 Sum_probs=79.5
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.++||+|||+++++++|.+++.||.+|++|++|.+|+|.+||++|.++|.|.++++++.++...+..+.+++++.++ .
T Consensus 318 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~ 395 (436)
T TIGR01923 318 QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--I 395 (436)
T ss_pred cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--C
Confidence 36899999999999999999999999999999999999999999999999999999998877777788888887653 5
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.+++.++|++
T Consensus 396 ~~~~l~~~l~~ 406 (436)
T TIGR01923 396 SQAKLIAYLTE 406 (436)
T ss_pred CHHHHHHHHHH
Confidence 67778877764
No 101
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.84 E-value=2.7e-20 Score=137.40 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC--CeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
++|||+|||++++++||++++.||.||+||++|++|+|.|||++|.+|| .+.+++|++.+++..++.++++++..
T Consensus 1017 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~--- 1093 (1146)
T PRK08633 1017 GIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG--- 1093 (1146)
T ss_pred CCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---
Confidence 4599999999999999999999999999999999999999999999998 46679999999988888888888762
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.+++++++++
T Consensus 1094 ~~~~~~l~~~~~~ 1106 (1146)
T PRK08633 1094 AEDVEELKRAIKE 1106 (1146)
T ss_pred ccCHHHHHHHHHh
Confidence 3566778877753
No 102
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.84 E-value=3.3e-20 Score=132.00 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
+|||+|||+|++++||+++|.||.+|+||. +|++|+|.+||+++.+||.|.+++|++.. .++.++|+|++++
T Consensus 492 dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~ 564 (660)
T PLN02430 492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNE 564 (660)
T ss_pred ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCH
Confidence 799999999999999999999999999996 79999999999999999999999999842 3467889998754
No 103
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.83 E-value=3.8e-20 Score=132.28 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=62.8
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeE--EEEEeeCCCCCceEEEEEEEc
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEA--YAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~ 77 (94)
|+.+|||+|||+|++++||+++|+||.||+|| .+|++|+|.+||+++.+||.|.++ +|+..++ ...++++|++.
T Consensus 532 f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~ 608 (700)
T PTZ00216 532 LDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTD 608 (700)
T ss_pred ccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecC
Confidence 45689999999999999999999999999999 899999999999999999999973 3433322 34688888764
No 104
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.83 E-value=9.8e-20 Score=124.42 Aligned_cols=88 Identities=38% Similarity=0.596 Sum_probs=78.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|.+++.||.+|++|++|.+|+|.+||+.+.++|.|.++++++.++...+..++++++.. ...+
T Consensus 359 ~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~ 436 (483)
T PRK03640 359 DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVT 436 (483)
T ss_pred cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCC
Confidence 57999999999999999999999999999999999999999999999999999999988877777787877754 3577
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++++++|++
T Consensus 437 ~~~l~~~~~~ 446 (483)
T PRK03640 437 EEELRHFCEE 446 (483)
T ss_pred HHHHHHHHHH
Confidence 7888888865
No 105
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.82 E-value=1.8e-19 Score=125.44 Aligned_cols=89 Identities=39% Similarity=0.626 Sum_probs=78.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+++++++|.+++.||.+|+|+++|.+++|.+||++|.++|.|.+++|++.++...++.++++++..+ ...+
T Consensus 431 ~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~ 509 (560)
T PRK08974 431 DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLT 509 (560)
T ss_pred cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCCC
Confidence 589999999999999999999999999999999999999999999999999999999998877877777776543 3456
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.+++++++++
T Consensus 510 ~~~l~~~l~~ 519 (560)
T PRK08974 510 EEELITHCRR 519 (560)
T ss_pred HHHHHHHHHh
Confidence 6778777764
No 106
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.82 E-value=1e-19 Score=127.04 Aligned_cols=75 Identities=33% Similarity=0.399 Sum_probs=67.0
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
++||+|||+|+++ +|+++|.||.+|+||++|++|+|.|||++|.+||.+ .++++++++. .++.++++|+++++..
T Consensus 436 ~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~ 510 (578)
T PRK05850 436 GPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGD 510 (578)
T ss_pred CCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccC
Confidence 5799999999998 999999999999999999999999999999999985 4778888876 6788999999876543
No 107
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.81 E-value=3.4e-19 Score=122.06 Aligned_cols=90 Identities=23% Similarity=0.112 Sum_probs=75.0
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+.+||+|||++++ ++|++++.||.+|+||++|.+++|.+||+.+.++|.|.++++++.++...++.+++++++.++...
T Consensus 374 g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 452 (503)
T PRK04813 374 GQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE 452 (503)
T ss_pred CceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc
Confidence 3469999999999 899999999999999999999999999999999999999999998776667888888887654211
Q ss_pred C----HHHHHHHHhc
Q psy5015 83 N----ADDIRTFCKG 93 (94)
Q Consensus 83 ~----~~~l~~~l~~ 93 (94)
. ..+++++|++
T Consensus 453 ~~~~~~~~l~~~~~~ 467 (503)
T PRK04813 453 REFELTKAIKKELKE 467 (503)
T ss_pred ccchhHHHHHHHHHh
Confidence 1 1346666653
No 108
>PRK12467 peptide synthase; Provisional
Probab=99.81 E-value=2.6e-19 Score=143.39 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=76.9
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+.+||+|||++++++||.++|+||.|++||++|++|+|.|||++|.++|+|.+|+|++.+ ...+..++++++.......
T Consensus 1952 ~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~ 2030 (3956)
T PRK12467 1952 GSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLV 2030 (3956)
T ss_pred CccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccc
Confidence 457999999999999999999999999999999999999999999999999999999886 4456789999987654221
Q ss_pred --------CHHHHHHHHhc
Q psy5015 83 --------NADDIRTFCKG 93 (94)
Q Consensus 83 --------~~~~l~~~l~~ 93 (94)
..++|+++|++
T Consensus 2031 ~~~~~~~~~~~~l~~~l~~ 2049 (3956)
T PRK12467 2031 DDDEAQVALRAILKNHLKA 2049 (3956)
T ss_pred cccccccccHHHHHHHHHh
Confidence 34567777764
No 109
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.81 E-value=4.7e-19 Score=119.79 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=71.6
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC-
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN- 83 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~- 83 (94)
.|++|||+++++++|+|+|.||.||+||++|++|+|.+||++|.+||.|.+++|.. .++.+.++|+++++...+
T Consensus 275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~ 349 (386)
T TIGR02372 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAE 349 (386)
T ss_pred ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHH
Confidence 47999999999999999999999999999999999999999999999999998852 356788999887654333
Q ss_pred -HHHHHHHHhc
Q psy5015 84 -ADDIRTFCKG 93 (94)
Q Consensus 84 -~~~l~~~l~~ 93 (94)
.++|++++++
T Consensus 350 ~~~~l~~~~~~ 360 (386)
T TIGR02372 350 LEIELRATAAR 360 (386)
T ss_pred HHHHHHHHHHH
Confidence 4577777764
No 110
>PRK05691 peptide synthase; Validated
Probab=99.81 E-value=3.8e-19 Score=143.05 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+.+||+|||++++++||.++|+||.|++||++|++|+|.|||++|.+||+|.+++|+..... .+..++++++..++...
T Consensus 1503 ~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~ 1581 (4334)
T PRK05691 1503 GARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEA 1581 (4334)
T ss_pred CceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCC
Confidence 34699999999999999999999999999999999999999999999999999999866544 45788999988776666
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|+++|++
T Consensus 1582 ~~~~l~~~l~~ 1592 (4334)
T PRK05691 1582 EAERLKAALAA 1592 (4334)
T ss_pred CHHHHHHHHHH
Confidence 77889888875
No 111
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.81 E-value=6.4e-19 Score=121.34 Aligned_cols=90 Identities=29% Similarity=0.333 Sum_probs=78.7
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC--
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-- 81 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-- 81 (94)
++||+|||+++++++|.+++.||.+|+||++|.+++|.+||+.|.++|+|.++++++.++......+.+++++.++..
T Consensus 383 ~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 462 (508)
T TIGR02262 383 GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID 462 (508)
T ss_pred cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccc
Confidence 589999999999999999999999999999999999999999999999999999999887777778888888766542
Q ss_pred -CCHHHHHHHHhc
Q psy5015 82 -LNADDIRTFCKG 93 (94)
Q Consensus 82 -~~~~~l~~~l~~ 93 (94)
...+++++++++
T Consensus 463 ~~~~~~i~~~~~~ 475 (508)
T TIGR02262 463 TALETELKEHVKD 475 (508)
T ss_pred cccHHHHHHHHHH
Confidence 235677777664
No 112
>PRK05691 peptide synthase; Validated
Probab=99.80 E-value=6.7e-19 Score=141.68 Aligned_cols=90 Identities=24% Similarity=0.236 Sum_probs=76.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC--
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-- 80 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-- 80 (94)
+++||+|||+|++++||+++|+||.|++||++|++|+|.|||++|.+||+|.+|+|++... ..++.++++++.....
T Consensus 2566 ~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~-~~~~~lva~vv~~~~~~~ 2644 (4334)
T PRK05691 2566 GGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDT-PSGKQLAGYLVSAVAGQD 2644 (4334)
T ss_pred CCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeC-CCCcEEEEEEEecccccc
Confidence 4579999999999999999999999999999999999999999999999999999998854 3567888888864321
Q ss_pred ----CCCHHHHHHHHhc
Q psy5015 81 ----KLNADDIRTFCKG 93 (94)
Q Consensus 81 ----~~~~~~l~~~l~~ 93 (94)
....++|+++|++
T Consensus 2645 ~~~~~~~~~~l~~~l~~ 2661 (4334)
T PRK05691 2645 DEAQAALREALKAHLKQ 2661 (4334)
T ss_pred cccccccHHHHHHHHHh
Confidence 2234678888765
No 113
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.79 E-value=1.3e-19 Score=127.78 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred CCCCeEEcCceEEE----ecCCeEEEEeecCCeEE-eCcEEeC--hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEE
Q psy5015 2 DGYACGLKQDQFVL----REDGYGQVVGRIKDMII-RGGENIY--PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74 (94)
Q Consensus 2 ~~~~~~~TGD~~~~----~~~G~~~~~GR~~d~i~-~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 74 (94)
+++|||+|||+|++ +++|+++|.||.+|+|| .+|++|+ |.|+|.++.+||.|.+++|++.+++ .+.++|
T Consensus 437 ~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V 512 (614)
T PRK08180 437 DEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLV 512 (614)
T ss_pred ccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEE
Confidence 46899999999999 46899999999999888 5798766 7888999999999999999998765 467888
Q ss_pred EEcCC
Q psy5015 75 KLKEN 79 (94)
Q Consensus 75 ~~~~~ 79 (94)
+++++
T Consensus 513 ~~~~~ 517 (614)
T PRK08180 513 FPNLD 517 (614)
T ss_pred EcCHH
Confidence 87654
No 114
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.79 E-value=9e-19 Score=123.49 Aligned_cols=74 Identities=26% Similarity=0.249 Sum_probs=66.4
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
|+.||||+|||+|.++++|+|++.||.+++|| .+|++|.|+.||+.+.++|.|.+.+|++... ..+.|+|++..
T Consensus 445 f~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k----~~~~AlIvp~~ 519 (613)
T COG1022 445 FTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDK----KFLVALIVPDF 519 (613)
T ss_pred ccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCC----cceEEEEeCCH
Confidence 67899999999999999999999999999999 6999999999999999999999999998322 25788888643
No 115
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.77 E-value=5.3e-18 Score=117.72 Aligned_cols=75 Identities=29% Similarity=0.336 Sum_probs=63.6
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEee--CCCCCceEEEEEEEc
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP--DERMGEEVGISIKLK 77 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~--~~~~~~~~~~~v~~~ 77 (94)
.+|||+|||+++++++|.++++||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.+ +...++.+++++...
T Consensus 412 ~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~ 488 (545)
T PRK07768 412 ADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESN 488 (545)
T ss_pred CCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEec
Confidence 468999999999999999999999999999999999999999999999999998777665 333444555555443
No 116
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.74 E-value=3.6e-18 Score=120.63 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=56.8
Q ss_pred CCCCCeEEcCceEEE-e---cCCeEEEEeecCCeEEe-CcEEeChHHHH--HHHhcCCCeeeEEEEEeeCCC
Q psy5015 1 MDGYACGLKQDQFVL-R---EDGYGQVVGRIKDMIIR-GGENIYPKEIE--EFIQTHPNVLEAYAYGVPDER 65 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~-~---~~G~~~~~GR~~d~i~~-~G~~v~~~~iE--~~l~~~~~v~~~~v~~~~~~~ 65 (94)
|+++|||+|||+|++ + ++|+++|.||.||+||+ +|++|+|.+|| .++.+||.|.+|+|++.+++.
T Consensus 448 f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~ 519 (624)
T PRK12582 448 FDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF 519 (624)
T ss_pred cCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc
Confidence 346899999999998 4 46999999999999995 79999999885 688899999999999987664
No 117
>KOG1256|consensus
Probab=99.71 E-value=2.4e-17 Score=116.54 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 79 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 79 (94)
||++||++|||+|+++++|.|.|.||.++++| .+|++|.|+.||++..+.+.|.+.+|.+-.. ...++++|++++.
T Consensus 523 ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~---~~~LvaiVvpd~e 599 (691)
T KOG1256|consen 523 IDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL---RSFLVAIVVPDPE 599 (691)
T ss_pred hccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc---hhcEEEEEecChh
Confidence 57899999999999999999999999999999 5899999999999999999999999986643 3468899998653
No 118
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.69 E-value=4.1e-16 Score=106.00 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=62.8
Q ss_pred CCeEEcCceEEEecC-C-----eEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 4 YACGLKQDQFVLRED-G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~-G-----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
.+||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.+||.|...+.+........+.+.+.|+..
T Consensus 288 ~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~ 367 (422)
T TIGR02155 288 VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELK 367 (422)
T ss_pred eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence 469999999999875 4 4689999999999999999999999999999999865655565555556777777776
Q ss_pred CC
Q psy5015 78 EN 79 (94)
Q Consensus 78 ~~ 79 (94)
++
T Consensus 368 ~~ 369 (422)
T TIGR02155 368 PE 369 (422)
T ss_pred cC
Confidence 43
No 119
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.66 E-value=1.8e-16 Score=106.18 Aligned_cols=53 Identities=32% Similarity=0.305 Sum_probs=51.3
Q ss_pred eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEE
Q psy5015 6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 58 (94)
||+|||+++++++|++++.||.+|+++++|.+++|.+||+++..+|.|.+|+|
T Consensus 356 ~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 356 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999999999999999999999999999999999999998764
No 120
>KOG1179|consensus
Probab=99.62 E-value=4.7e-15 Score=102.97 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=82.6
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCC-CCceEEEEEEEcCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKENAK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~ 81 (94)
||-||.|||+-.+|+.|++||.+|+.|.+.++|+||+..|||.+|.....++++.|+++.-+. .|..-+|.|++.|..+
T Consensus 486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~ 565 (649)
T KOG1179|consen 486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTE 565 (649)
T ss_pred CcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCccc
Confidence 678999999999999999999999999999999999999999999999999999999998765 4677788888888888
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.+.+-+++++
T Consensus 566 ~d~~~l~~~l~~ 577 (649)
T KOG1179|consen 566 KDLEKLYQHLRE 577 (649)
T ss_pred chHHHHHHHHHh
Confidence 888888777764
No 121
>KOG1180|consensus
Probab=99.57 E-value=4.6e-15 Score=102.95 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 78 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 78 (94)
.+||+|||+|.+.+||+|.|++|.+|++| .+|+.|+++-+|.++...|.|...+|++... ...++++|++++
T Consensus 514 ~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~---~s~~VaiVVPn~ 586 (678)
T KOG1180|consen 514 QRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSN---KSKPVAIVVPNQ 586 (678)
T ss_pred cEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccc---cceeEEEEcCCc
Confidence 34999999999999999999999999999 6999999999999999999999999986644 346899999865
No 122
>KOG1178|consensus
Probab=99.40 E-value=1.3e-12 Score=96.44 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=79.7
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC-C
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-L 82 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~ 82 (94)
+..|+|||.++..++|.+.+.||.|++||.+|.|+.+.+|++++..||.|.++.+....+..-++.+.++++.....+ .
T Consensus 453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~ 532 (1032)
T KOG1178|consen 453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV 532 (1032)
T ss_pred hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence 468999999999999999999999999999999999999999999999999999999998888899999999876543 3
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
....|++++..
T Consensus 533 ~~~~i~~~l~~ 543 (1032)
T KOG1178|consen 533 LIRDIRNYLKK 543 (1032)
T ss_pred hHHHHHHhhcc
Confidence 34667777764
No 123
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=99.15 E-value=3.7e-11 Score=80.93 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRG 34 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~ 34 (94)
+|||+|||+|+++++|++++.||.||+||++
T Consensus 387 ~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 387 DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 5799999999999999999999999999975
No 124
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.15 E-value=5.9e-10 Score=76.84 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=50.7
Q ss_pred EEcCceEEEec-C----Ce----EEEEeecCCeEEeCcEEeChHHHHHHHhcC---CCeeeEEEEEeeCCCC-CceEEEE
Q psy5015 7 GLKQDQFVLRE-D----GY----GQVVGRIKDMIIRGGENIYPKEIEEFIQTH---PNVLEAYAYGVPDERM-GEEVGIS 73 (94)
Q Consensus 7 ~~TGD~~~~~~-~----G~----~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~v~~~~v~~~~~~~~-~~~~~~~ 73 (94)
|+|||++++.. + |. +...||.|||++++|.+|+|.+||++|.++ +.+...+-+....... ...+.+.
T Consensus 300 YrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 379 (445)
T TIGR03335 300 YDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVS 379 (445)
T ss_pred eecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEE
Confidence 89999999732 2 32 445699999999999999999999999994 6665444333333322 3356666
Q ss_pred EEEcCC
Q psy5015 74 IKLKEN 79 (94)
Q Consensus 74 v~~~~~ 79 (94)
+...+.
T Consensus 380 ~e~~~~ 385 (445)
T TIGR03335 380 LECEDK 385 (445)
T ss_pred EEecCc
Confidence 666554
No 125
>PTZ00297 pantothenate kinase; Provisional
Probab=99.06 E-value=6.4e-10 Score=85.17 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=56.9
Q ss_pred EEcCce-EEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 7 GLKQDQ-FVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 7 ~~TGD~-~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
-.|++. +.|.+||+|.|+||++++|| .+|++|+|+.||+.+.++|.|.+++|++...+ .++|+|+++
T Consensus 837 e~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd 905 (1452)
T PTZ00297 837 RRTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPN 905 (1452)
T ss_pred HHHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeC
Confidence 346665 35668999999999999999 69999999999999999999999999987544 378888864
No 126
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.05 E-value=3.1e-09 Score=72.98 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=59.2
Q ss_pred EEcCceEEEecC----Ce-----EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 7 GLKQDQFVLRED----GY-----GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 7 ~~TGD~~~~~~~----G~-----~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
|+|||++.+.++ |+ ..+.||.||++++.|.+|+|..||.+|.+.+.+..-+.+.....+..+.+.+.|++.
T Consensus 304 YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~ 383 (438)
T COG1541 304 YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE 383 (438)
T ss_pred EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence 999999999763 32 469999999999999999999999999999999844433343455667888888887
Q ss_pred CC
Q psy5015 78 EN 79 (94)
Q Consensus 78 ~~ 79 (94)
+.
T Consensus 384 ~~ 385 (438)
T COG1541 384 NE 385 (438)
T ss_pred Cc
Confidence 54
No 127
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=98.96 E-value=2.3e-09 Score=56.93 Aligned_cols=46 Identities=39% Similarity=0.637 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 42 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 42 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
|||++|.+||+|.+|+|++.+++..|+.+++++++ +.++|+++|++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~ 46 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRD 46 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHH
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhh
Confidence 79999999999999999999998889999999998 44888888875
No 128
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=1.9e-09 Score=76.58 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=44.8
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 51 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 51 (94)
++|+|||++++..+|.+.+.||.|.++|++|++|.+.|||..+.++|
T Consensus 596 ~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 596 RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 38999999999999999999999999999999999999999998875
No 129
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=98.31 E-value=8.4e-06 Score=45.47 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=37.6
Q ss_pred cEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 35 GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 35 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|.||+|.+||++|.++|++...+.+.+......+.+.+.|.+.++.
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~ 46 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF 46 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc
Confidence 7899999999999999999966666666556678888999988764
No 130
>KOG3628|consensus
Probab=98.09 E-value=2e-05 Score=59.42 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCCeEEcCceEEEec------CC----eEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeeeEEEEEeeCCCCCceEE
Q psy5015 3 GYACGLKQDQFVLRE------DG----YGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVG 71 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~------~G----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~ 71 (94)
+.+|-||||+|++.. ++ .||++|-.+..+-++|.+-+|.+||+.+.. ||.|..|+|+-... .++
T Consensus 1217 ~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvV 1291 (1363)
T KOG3628|consen 1217 GKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVV 1291 (1363)
T ss_pred cccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEE
Confidence 568999999999842 22 489999999999999999999999988876 99999999985533 355
Q ss_pred EEEEEcC
Q psy5015 72 ISIKLKE 78 (94)
Q Consensus 72 ~~v~~~~ 78 (94)
.++++..
T Consensus 1292 vviE~~g 1298 (1363)
T KOG3628|consen 1292 VVIECHG 1298 (1363)
T ss_pred EEEEecC
Confidence 5555543
No 131
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=97.67 E-value=0.00037 Score=48.45 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=46.1
Q ss_pred EEcCceEEEecC----Ce----E-EEEeecCCeEEe---C--cEEeChHHHHHHHh-cCCCeeeEEEEEeeCCCCCceEE
Q psy5015 7 GLKQDQFVLRED----GY----G-QVVGRIKDMIIR---G--GENIYPKEIEEFIQ-THPNVLEAYAYGVPDERMGEEVG 71 (94)
Q Consensus 7 ~~TGD~~~~~~~----G~----~-~~~GR~~d~i~~---~--G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~~~~~ 71 (94)
|+|||++.+.++ |. + .+.||.+|++++ + +.+++|..++.++. ..+.+.+..++.. ....+.
T Consensus 297 YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~----~~~~l~ 372 (430)
T TIGR02304 297 YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT----GSAQLE 372 (430)
T ss_pred eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc----cCCeEE
Confidence 899999887543 32 2 388999999986 3 45669999998755 5788888776632 123455
Q ss_pred EEEEE
Q psy5015 72 ISIKL 76 (94)
Q Consensus 72 ~~v~~ 76 (94)
+.++.
T Consensus 373 v~~~~ 377 (430)
T TIGR02304 373 LIADC 377 (430)
T ss_pred EEEEe
Confidence 55554
No 132
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=97.54 E-value=0.00074 Score=48.07 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=49.4
Q ss_pred EEcCceEEEec--CC--eEEEEeecCCeEEeCcEEeChHHHHHHHhcC---C--CeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 7 GLKQDQFVLRE--DG--YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH---P--NVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 7 ~~TGD~~~~~~--~G--~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
|+.||++++.. ++ .+.|+||.+.++++.|++++-.++++++.+. . .+.+..+.+.........-..++.+.
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~ 450 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE 450 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence 89999999853 34 6899999999999999999999999999874 2 34555555443222333555666665
Q ss_pred CC
Q psy5015 78 EN 79 (94)
Q Consensus 78 ~~ 79 (94)
..
T Consensus 451 ~~ 452 (528)
T PF03321_consen 451 GE 452 (528)
T ss_dssp S-
T ss_pred CC
Confidence 43
No 133
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=96.81 E-value=0.028 Score=40.86 Aligned_cols=43 Identities=5% Similarity=-0.017 Sum_probs=38.2
Q ss_pred EEcCceEEEecC----CeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 7 GLKQDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 7 ~~TGD~~~~~~~----G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
|+.||++++..- -.+.|+||.+.++++.|++++-.+++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 899999998532 3588999999999999999999999998877
No 134
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=94.58 E-value=0.49 Score=34.75 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=37.9
Q ss_pred EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
|+.||+.++.. .-.+.|++|.+.+..+.|.+++-.++..++.+.
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 89999998852 346899999999999999999999998887763
No 135
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=93.38 E-value=0.2 Score=36.70 Aligned_cols=44 Identities=7% Similarity=0.008 Sum_probs=38.2
Q ss_pred EEcCceEEEe----cCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 7 GLKQDQFVLR----EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 7 ~~TGD~~~~~----~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
|+.||+.++. ..-.+.|++|.+.+..+.|.+++-.++..++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 8999999884 2346899999999999999999999999888773
No 136
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=87.57 E-value=2.3 Score=21.07 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=30.0
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
...|++.|.+.|+|..+.+-.. .+ .+.|...+.. .+.++|.+.+++
T Consensus 13 ~~~v~~~l~~~~GV~~v~vd~~----~~---~v~v~~~~~~-~~~~~i~~~i~~ 58 (62)
T PF00403_consen 13 AKKVEKALSKLPGVKSVKVDLE----TK---TVTVTYDPDK-TSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHHTSTTEEEEEEETT----TT---EEEEEESTTT-SCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEECC----CC---EEEEEEecCC-CCHHHHHHHHHH
Confidence 4678999999999977655311 11 2344444443 677888887764
No 137
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=84.58 E-value=6.9 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.5
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeC
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPD 63 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~ 63 (94)
...|++.+.+.|+|.+|.|+...+
T Consensus 77 a~~i~~~v~~~~~V~~A~vvv~~~ 100 (177)
T PF09580_consen 77 ADRIANRVKKVPGVEDATVVVTDD 100 (177)
T ss_pred HHHHHHHHhcCCCceEEEEEEECC
Confidence 456778888899999999997744
No 138
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=76.75 E-value=3.3 Score=20.66 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.6
Q ss_pred cCceEEEecCCeEEEEeec
Q psy5015 9 KQDQFVLREDGYGQVVGRI 27 (94)
Q Consensus 9 TGD~~~~~~~G~~~~~GR~ 27 (94)
-|.+.+.+++|.+.|.|+.
T Consensus 32 ~~~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 32 GGGILYVDEDGRYLIQGQL 50 (57)
T ss_dssp TTEEEEEETTSSEEEES-E
T ss_pred CCeEEEEcCCCCEEEEeEE
Confidence 5789999999999999874
No 139
>KOG3628|consensus
Probab=75.70 E-value=8.2 Score=30.85 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=42.5
Q ss_pred CeEEcCceEEEecCCeEEEEe-ecCCeEEeCcEEeChHH----------HHHHHhcCCCeeeEEEEEeeCCCCCceEEEE
Q psy5015 5 ACGLKQDQFVLREDGYGQVVG-RIKDMIIRGGENIYPKE----------IEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~G-R~~d~i~~~G~~v~~~~----------iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 73 (94)
.|.|||=+|++.+ |.++++| +.|....+.|......+ |+.+.+..+.|-++.++- .+++.+.
T Consensus 571 ~FmRtGLlGFv~~-gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv 643 (1363)
T KOG3628|consen 571 PFMRTGLLGFVHN-GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVV 643 (1363)
T ss_pred hhhhhcceeeeeC-CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEE
Confidence 4789999999985 5555555 54555557777766544 345555567777877774 3345554
Q ss_pred EEEcCC
Q psy5015 74 IKLKEN 79 (94)
Q Consensus 74 v~~~~~ 79 (94)
+.-.|.
T Consensus 644 ~~esP~ 649 (1363)
T KOG3628|consen 644 VLESPD 649 (1363)
T ss_pred EEeCcc
Confidence 444443
No 140
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=73.76 E-value=18 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCeeeEEEEEeeC
Q psy5015 41 KEIEEFIQTHPNVLEAYAYGVPD 63 (94)
Q Consensus 41 ~~iE~~l~~~~~v~~~~v~~~~~ 63 (94)
..|.+.+.+.|+|.+|.++...+
T Consensus 57 ~~Ia~~v~~v~~V~dA~vvVtg~ 79 (158)
T TIGR02898 57 DEIASEAAKVKGVKDATVVITGN 79 (158)
T ss_pred HHHHHHHhcCCCCceEEEEEECC
Confidence 45677778899999999987654
No 141
>PHA02553 6 baseplate wedge subunit; Provisional
Probab=71.47 E-value=21 Score=26.62 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=41.1
Q ss_pred CCeEEeCcEEeChHHHHHHHhc-CCCeeeEEEEEeeCCCCC--ceEEEEEEEcCCCCCCH---HHHHHHHhc
Q psy5015 28 KDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG--EEVGISIKLKENAKLNA---DDIRTFCKG 93 (94)
Q Consensus 28 ~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~--~~~~~~v~~~~~~~~~~---~~l~~~l~~ 93 (94)
-.++...+.-|.+.+-|....+ +|+|..+.++........ ..+.+.|+++.+..++. ++|+++|.+
T Consensus 305 P~~~rt~~RAVTa~DYE~lA~~~~p~V~rA~~~~~~~~spp~~G~V~VvVvP~~g~~ls~~l~~~I~~yL~~ 376 (611)
T PHA02553 305 PRMREAQRRAVTASDYEAFVSERFGSIVQAVQCGGDSLKPPVYGYVFIAVKPKSGLYLTDVQKEDIKNYLKK 376 (611)
T ss_pred hHhhhcccccccHHHHHHHHHhhCCccEEEEEccCCcCCCCCCceEEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 3444556788999999998877 799998887653221110 13555556655544443 556666654
No 142
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=71.04 E-value=15 Score=23.63 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=28.7
Q ss_pred cCceEEEecCCeEEEEeecCCeEEeCcE---EeChHHHHHHHhcCCCeeeEEEEEe
Q psy5015 9 KQDQFVLREDGYGQVVGRIKDMIIRGGE---NIYPKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 9 TGD~~~~~~~G~~~~~GR~~d~i~~~G~---~v~~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
-|.+.+.++||.+.|.|. ++...+. ++.-...+..+.+.| .+..+++.
T Consensus 54 ~~~i~Y~~~dg~y~i~G~---l~d~~~~~~~~~t~~~~~~~~~~l~--~~~i~~g~ 104 (232)
T PRK10877 54 ESGVLYITDDGKHIIQGP---MYDVSGTAPVNVTNQLLLKKLNALE--KEMIVYKA 104 (232)
T ss_pred CCeEEEEcCCCCEEEeee---eEecCCCCCCChHHHHHHHHHHhhh--hhcEEecC
Confidence 367999999999999997 4555543 343333334444454 23444443
No 143
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=69.72 E-value=7 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=25.5
Q ss_pred EEcCceEEEecCCeE-------EEEeecCCeEEeCcEE
Q psy5015 7 GLKQDQFVLREDGYG-------QVVGRIKDMIIRGGEN 37 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~-------~~~GR~~d~i~~~G~~ 37 (94)
|.-||++.+.-|+.+ +|.||+..++++.|.-
T Consensus 35 y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A 72 (98)
T PRK04306 35 FEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRA 72 (98)
T ss_pred ccCCCEEEEEecCceecCCccccccCCCEEEEeecCeE
Confidence 788999999988876 5899998888877653
No 144
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=69.49 E-value=13 Score=18.73 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=29.2
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
...++.+.|.++|.|.+|..+.-.. .+.+.+.. .+.++|.+++.
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vtG~~-----d~~~~v~~-----~d~~~l~~~i~ 54 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVTGEY-----DLILKVRA-----RDMEELEEFIR 54 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSSS-----SEEEEEEE-----SSHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCCC-----CEEEEEEE-----CCHHHHHHHHH
Confidence 4677888999999999988773322 24555554 35566666643
No 145
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=66.90 E-value=8 Score=27.03 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=36.8
Q ss_pred EcCceEEEecCCeEE--------EEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCC
Q psy5015 8 LKQDQFVLREDGYGQ--------VVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 64 (94)
Q Consensus 8 ~TGD~~~~~~~G~~~--------~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 64 (94)
..||.+-.-.+|.|- -.|..-..+.. -|..+.|++||+.|.+.|.++-.+++....+
T Consensus 78 ~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETS 143 (383)
T COG0075 78 EPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETS 143 (383)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCc
Confidence 356666666666431 22222233332 4899999999999999999877777655543
No 146
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=66.84 E-value=30 Score=21.93 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=24.9
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCC-----CCc--eEEEEEEEcCCCCCC
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDER-----MGE--EVGISIKLKENAKLN 83 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~-----~~~--~~~~~v~~~~~~~~~ 83 (94)
-.++++.|.++++|..|.|....... ..+ ...+++.++++...+
T Consensus 117 e~eL~~tI~~i~gV~~A~V~l~~Pe~~~f~~~~~~~sASV~l~~~~g~~l~ 167 (206)
T PF01514_consen 117 EGELERTIESIDGVESARVHLVLPERSVFGENQQPPSASVVLKLKPGSELS 167 (206)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEE----BTTB----EEEEEEEEE-TTS--G
T ss_pred HHHHHHHHHcCCCeeEEEEEEecCCccccccCCCCCeEEEEEEECCCCChH
Confidence 46889999999999998886543221 112 233455556666555
No 147
>KOG2768|consensus
Probab=62.80 E-value=9.1 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=25.6
Q ss_pred CceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 10 QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 10 GD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
|--|.+|.++.|.+.|| +.+.++|++|+.+
T Consensus 148 gTsGSidg~~rLviKGr-----------fq~kq~e~VLRrY 177 (231)
T KOG2768|consen 148 GTSGSIDGQQRLVIKGR-----------FQQKQFENVLRRY 177 (231)
T ss_pred ccccccCCCceEEEecc-----------ccHHHHHHHHHHH
Confidence 44577888999999998 7899999999984
No 148
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=61.70 E-value=12 Score=23.01 Aligned_cols=30 Identities=13% Similarity=-0.123 Sum_probs=22.6
Q ss_pred EEcCceEEEecCCeE-------EEEeecCCeEEeCcE
Q psy5015 7 GLKQDQFVLREDGYG-------QVVGRIKDMIIRGGE 36 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~-------~~~GR~~d~i~~~G~ 36 (94)
|.-||++.+.-||.+ ++.||+..++++.|.
T Consensus 34 yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~ 70 (160)
T PTZ00189 34 FKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPR 70 (160)
T ss_pred ccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCe
Confidence 778999999888765 477777777665543
No 149
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=61.19 E-value=14 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=18.2
Q ss_pred CeEEeCcEEeChHHHHHHHhcC
Q psy5015 29 DMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 29 d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
...+++|..+++.+||+-+...
T Consensus 50 ~~y~Igg~~~SL~dIe~~ILR~ 71 (117)
T PF04784_consen 50 VRYNIGGQRFSLDDIEHGILRG 71 (117)
T ss_pred eEEEECCEEecHHHHHHhhccC
Confidence 4567999999999999876654
No 150
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=61.07 E-value=21 Score=20.45 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 13 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
+.++++|.+.+.|| .++..|+++|...
T Consensus 50 g~id~~~rlii~G~-----------~~~~~i~~~l~~y 76 (110)
T smart00653 50 GSIDGKGRLIVNGR-----------FTPKKLQDLLRRY 76 (110)
T ss_pred eeECCCCeEEEEEe-----------eCHHHHHHHHHHH
Confidence 44555566666666 7899999999774
No 151
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=60.86 E-value=38 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=24.6
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
..+|++.+.++|+|.+.--+-....+....+.+.+++.++.+
T Consensus 215 ~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~ 256 (299)
T PRK09509 215 RQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLP 256 (299)
T ss_pred HHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCC
Confidence 456888888889876644333333223335566677765543
No 152
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=59.80 E-value=46 Score=21.70 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.1
Q ss_pred CceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHH
Q psy5015 10 QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 46 (94)
Q Consensus 10 GD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~ 46 (94)
|.+.+.++||.+.|.|.. +..+|.++.-..++..
T Consensus 58 ~~i~Y~t~dg~y~i~G~l---~d~~~~nlT~~~~~~~ 91 (251)
T PRK11657 58 GVTIYLTPDGKHAISGYM---YDEKGENLSEALLEKE 91 (251)
T ss_pred ceEEEEcCCCCEEEEEEE---EcCCCCccCHHHHHHH
Confidence 347888999999999975 4456788888777763
No 153
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=59.67 E-value=13 Score=25.67 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=19.4
Q ss_pred CeEEcCceEEEecC--------CeEEEEeecCC
Q psy5015 5 ACGLKQDQFVLRED--------GYGQVVGRIKD 29 (94)
Q Consensus 5 ~~~~TGD~~~~~~~--------G~~~~~GR~~d 29 (94)
+..-|.|+|.+..+ .++.++||.+.
T Consensus 318 ~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 318 GFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred cEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 45779999988654 27999999874
No 154
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=59.05 E-value=4.7 Score=14.39 Aligned_cols=6 Identities=0% Similarity=-0.485 Sum_probs=4.6
Q ss_pred CCeEEc
Q psy5015 4 YACGLK 9 (94)
Q Consensus 4 ~~~~~T 9 (94)
.||+||
T Consensus 8 ~~WWrt 13 (14)
T PF08255_consen 8 HGWWRT 13 (14)
T ss_pred eeEEEc
Confidence 478887
No 155
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=56.69 E-value=5.7 Score=20.01 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.0
Q ss_pred EeChHHHHHHHhcCCCeeeEEEEEe
Q psy5015 37 NIYPKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 37 ~v~~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
.+++..+++.|.++|.|.++.+--.
T Consensus 33 ~~~~~~~~~~l~~~p~V~~v~V~r~ 57 (69)
T PF08478_consen 33 SLDLKKIEQRLEKLPWVKSVSVSRR 57 (69)
T ss_dssp CSHHHHHHHCCCCTTTEEEEEEEEE
T ss_pred EECHHHHHHHHHcCCCEEEEEEEEe
Confidence 5788999999999999999887643
No 156
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=56.60 E-value=15 Score=15.21 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.3
Q ss_pred EecCCeEEEEeecCCeEE
Q psy5015 15 LREDGYGQVVGRIKDMII 32 (94)
Q Consensus 15 ~~~~G~~~~~GR~~d~i~ 32 (94)
++++|.+++..+....|+
T Consensus 9 v~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EETTSEEEEEECCCTEEE
T ss_pred EeCCCCEEEEECCCCEEE
Confidence 458999999998777665
No 157
>KOG1556|consensus
Probab=55.06 E-value=4.7 Score=26.61 Aligned_cols=10 Identities=0% Similarity=-0.214 Sum_probs=7.8
Q ss_pred CeEEcCceEE
Q psy5015 5 ACGLKQDQFV 14 (94)
Q Consensus 5 ~~~~TGD~~~ 14 (94)
|||+||-.-+
T Consensus 94 GWYhTGPkl~ 103 (309)
T KOG1556|consen 94 GWYHTGPKLR 103 (309)
T ss_pred eeeccCCccc
Confidence 8999996544
No 158
>PLN00190 60S ribosomal protein L21; Provisional
Probab=54.51 E-value=15 Score=22.49 Aligned_cols=29 Identities=14% Similarity=-0.126 Sum_probs=22.2
Q ss_pred EEcCceEEEecCCeE-------EEEeecCCeEEeCc
Q psy5015 7 GLKQDQFVLREDGYG-------QVVGRIKDMIIRGG 35 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~-------~~~GR~~d~i~~~G 35 (94)
|.-||++.+.-||.+ ++.||+..++++.|
T Consensus 34 yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~ 69 (158)
T PLN00190 34 FKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTK 69 (158)
T ss_pred hcCCCEEEEEecCCeecCCCcccccCCCeEEEeecC
Confidence 778999999888765 47888777776554
No 159
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=53.72 E-value=15 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.9
Q ss_pred EEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 22 QVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 22 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
++++|...+|+.-.-+..|.++|..|.+
T Consensus 131 FLvdr~G~VV~Rf~p~t~P~d~~~~Ie~ 158 (162)
T COG0386 131 FLVDRDGNVVKRFSPKTKPEDIELAIEK 158 (162)
T ss_pred EEEcCCCcEEEeeCCCCChhhHHHHHHH
Confidence 6899999999998899999999987765
No 160
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=53.33 E-value=3.7 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=22.7
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 48 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~ 48 (94)
.||++++.+..+ -+...+|--+|.+|.+..|+..+.
T Consensus 36 nWFk~~~~~~~n--------~KIEqIidKnG~~ITs~qld~l~~ 71 (145)
T PF08339_consen 36 NWFKEDNSGNYN--------HKIEQIIDKNGRRITSDQLDKLLE 71 (145)
T ss_pred hhhhccccccch--------hhHHHHhcCCCCEEcHhHHHHHhc
Confidence 367776666422 133444556788888888888776
No 161
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=53.24 E-value=46 Score=19.68 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=29.2
Q ss_pred eEEcCce----------EEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCC
Q psy5015 6 CGLKQDQ----------FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN 52 (94)
Q Consensus 6 ~~~TGD~----------~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 52 (94)
|||.+|- ..+.++|.++++-.+.-. .-.|.|.+|.++......
T Consensus 52 WwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr----~g~V~~~~I~eaA~taGL 104 (127)
T PF11253_consen 52 WWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGR----PGHVEPSDIREAAPTAGL 104 (127)
T ss_pred EEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCC----CCCCCHHHHHHHHhhcCC
Confidence 7888763 334578999987654321 356999999988765433
No 162
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=51.63 E-value=22 Score=20.32 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=25.6
Q ss_pred CeEEcCceEEEecCC--eEEEEeecCCeEEe-CcE-------EeChHHHH
Q psy5015 5 ACGLKQDQFVLREDG--YGQVVGRIKDMIIR-GGE-------NIYPKEIE 44 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G--~~~~~GR~~d~i~~-~G~-------~v~~~~iE 44 (94)
..|+.||.+.+..++ .-.++||...+.+- +|. -..|.|+.
T Consensus 2 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~ 51 (121)
T cd04717 2 LQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETF 51 (121)
T ss_pred CEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHcc
Confidence 479999999996543 34457777766663 232 34566663
No 163
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=51.41 E-value=40 Score=18.67 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=17.8
Q ss_pred EEcCceEEEecCC--eEEEEeecCCeE
Q psy5015 7 GLKQDQFVLREDG--YGQVVGRIKDMI 31 (94)
Q Consensus 7 ~~TGD~~~~~~~G--~~~~~GR~~d~i 31 (94)
|+.||.+++..+. .-+.+||..++.
T Consensus 3 ~~vGD~V~v~~~~~~~~~~v~~I~~i~ 29 (119)
T PF01426_consen 3 YKVGDFVYVKPDDPPEPPYVARIEEIW 29 (119)
T ss_dssp EETTSEEEEECTSTTSEEEEEEEEEEE
T ss_pred EeCCCEEEEeCCCCCCCCEEEEEEEEE
Confidence 7899999997665 556666665444
No 164
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=48.50 E-value=46 Score=21.23 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=38.1
Q ss_pred ecCCeEEeCcEEeChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHH
Q psy5015 26 RIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFC 91 (94)
Q Consensus 26 R~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l 91 (94)
|....+.....-......+...++. |+|.++.++.... ..| .+.++|....+ .++. ++++++|
T Consensus 107 R~~~~~~~~~~~gt~~dy~~~a~~~~~gV~~v~v~~~~~-~~G-~V~v~v~~~~g-~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 107 RILESLRSPSRAGTADDYEYWALSVSPGVADVKVYPNWN-GPG-TVDVYVLGANG-APSQELLAAVQAYI 173 (243)
T ss_pred HHHHhhcccccCCCHHHHHHHHHHhCCCceEEEEecCCC-CCC-EEEEEEccCCC-CCCHHHHHHHHHHh
Confidence 3333444444557889999988887 9999999986644 223 34445544433 3332 4455555
No 165
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=47.91 E-value=52 Score=18.77 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.7
Q ss_pred CeEEeCcEEeChHHHHHHHhcC
Q psy5015 29 DMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 29 d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
..+-++|..++..+++..+.+.
T Consensus 60 g~~~~~~~~v~~~~L~~~l~~~ 81 (121)
T TIGR02804 60 NQLYFNDKPISLEELEAEIAQL 81 (121)
T ss_pred CCEEECCcccCHHHHHHHHHhh
Confidence 3344578889999999988764
No 166
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=43.96 E-value=86 Score=20.16 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=27.3
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCC-CceEEEEEEEcCCCCC
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKL 82 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~ 82 (94)
...+|++.+.++|+|.+..-+-....+. .-...+.+.+.++.+.
T Consensus 193 ~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~ 237 (268)
T TIGR01297 193 DLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDL 237 (268)
T ss_pred cHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCCh
Confidence 4678888888899886654443333333 3355677777665443
No 167
>PRK05934 type III secretion system protein; Validated
Probab=43.66 E-value=1.1e+02 Score=21.22 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCeeeEEEEE-eeCCCC-CceEEEEEE--EcCCCCCCHHHHH
Q psy5015 41 KEIEEFIQTHPNVLEAYAYG-VPDERM-GEEVGISIK--LKENAKLNADDIR 88 (94)
Q Consensus 41 ~~iE~~l~~~~~v~~~~v~~-~~~~~~-~~~~~~~v~--~~~~~~~~~~~l~ 88 (94)
.|++..|.+.++|..|.|.- .|.+.. .+.+.|-|+ +.++...+.++++
T Consensus 74 GELaRTIesld~VesARVHLAlPe~s~~~~~pTASVvLtL~~G~tLs~~QV~ 125 (341)
T PRK05934 74 EQLEKDLTMFHPVAQATVALSLETEDDPMSPAEISVILSLPKAETLSPSLLH 125 (341)
T ss_pred HHHHHHHHcccCcceeEEEEeCCCCCccCCCCceEEEEecCCCCcCCHHHHH
Confidence 46777788899999988844 443322 233444444 4666677776654
No 168
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=43.50 E-value=60 Score=18.20 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=37.0
Q ss_pred CeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 29 DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 29 d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
|..|- +.-+..++-..|.++++|..+-+....-...-+.+...++ +..++.+++++.+.+
T Consensus 10 DVlKP--~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiE---G~~id~d~i~~~Ie~ 69 (95)
T PF02680_consen 10 DVLKP--HEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIE---GDDIDFDEIKEAIEE 69 (95)
T ss_dssp EEEEE--SSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEE---ESSE-HHHHHHHHHH
T ss_pred EeecC--CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEE---eCCCCHHHHHHHHHH
Confidence 45555 4456678889999999998877665554333333433333 556888888887754
No 169
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=42.87 E-value=25 Score=15.87 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.2
Q ss_pred EEecCCeEEEEeecC
Q psy5015 14 VLREDGYGQVVGRIK 28 (94)
Q Consensus 14 ~~~~~G~~~~~GR~~ 28 (94)
.+|.+|.+|+.|-..
T Consensus 19 avD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 19 AVDSNGNIYVTGYTN 33 (38)
T ss_pred EECCCCCEEEEEeec
Confidence 368899999999764
No 170
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=42.53 E-value=99 Score=20.44 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.4
Q ss_pred hHHHHHHHhcCCCeeeEEEEEe
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
-.|+++.|.+.++|.+|-|...
T Consensus 109 egELarTI~~idgV~~ArVhL~ 130 (249)
T PRK15348 109 EQRIEGMLSQMEGVINAKVTIA 130 (249)
T ss_pred HHHHHHHHHhCCCeeEeEEEEE
Confidence 3779999999999999988544
No 171
>KOG0640|consensus
Probab=41.72 E-value=1.2e+02 Score=21.18 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=35.6
Q ss_pred EEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEE
Q psy5015 13 FVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~ 59 (94)
+++.+.|.+|+.|-+|.-|| +.| |+-.-|+.+-++|.+-.-|.++
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred EEecCCccEEEEeccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEE
Confidence 34567899999999999999 566 6788899988889876555444
No 172
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=41.48 E-value=35 Score=19.69 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=12.9
Q ss_pred EEcCceEEEecCCeEEE
Q psy5015 7 GLKQDQFVLREDGYGQV 23 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~ 23 (94)
+..||++++-+.+.+.|
T Consensus 60 ~~~GDi~Yw~pg~~l~i 76 (120)
T PF04126_consen 60 VEAGDIAYWPPGGALAI 76 (120)
T ss_dssp B-TTEEEEECCCTEEEE
T ss_pred ccCceEEEeCCCCEEEE
Confidence 57899999988887653
No 173
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=41.32 E-value=6.9 Score=20.40 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=16.8
Q ss_pred eEEeCcEEeChHHHHHHHhc
Q psy5015 30 MIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 30 ~i~~~G~~v~~~~iE~~l~~ 49 (94)
+++..|..|++.++.+.+.+
T Consensus 22 if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 22 IFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HHHHcCCccCHHHHHHHHCC
Confidence 34578999999999999977
No 174
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=40.86 E-value=92 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.1
Q ss_pred hHHHHHHHhcCCCeeeEEEEEe
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
-.|+++.|.++++|.+|-|...
T Consensus 109 e~EL~rtI~~i~~V~~ArVhl~ 130 (193)
T TIGR02544 109 EQRLEQTLSQIDGVISARVHVV 130 (193)
T ss_pred HHHHHHHHHhcCCeeeeEEEEE
Confidence 4688899999999999888543
No 175
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.04 E-value=38 Score=17.01 Aligned_cols=26 Identities=15% Similarity=-0.079 Sum_probs=19.6
Q ss_pred CcEEeChHHHHHHHhcCCCeeeEEEE
Q psy5015 34 GGENIYPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 34 ~G~~v~~~~iE~~l~~~~~v~~~~v~ 59 (94)
.+..-.+..+-+.|++.|+|.++.++
T Consensus 50 ~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 50 STMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred CchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 44444677888888899999987765
No 176
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=39.57 E-value=76 Score=18.23 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=33.5
Q ss_pred EcCceEEEecCC----eEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 8 LKQDQFVLREDG----YGQVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 8 ~TGD~~~~~~~G----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
+.|+.++....+ .+.++||..|.|-..|+---|..+-++...
T Consensus 19 ~~Grfv~l~l~~~~~~~fVyvG~~rdYIl~~gfCSCp~~~~svvl~ 64 (117)
T COG5431 19 KRGRFVFLYLKRSKVKFFVYVGKERDYILEGGFCSCPDFLGSVVLK 64 (117)
T ss_pred ccCcEEEEeeCCceEEEEEEEccccceEEEcCcccCHHHHhHhhhc
Confidence 458888887664 356899999999999998889888777655
No 177
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=38.10 E-value=57 Score=16.55 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=17.4
Q ss_pred CCCeEEcCceEEEecCCeEEEEe
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVG 25 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~G 25 (94)
+|-|+..||...+...+.+++.+
T Consensus 36 ~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 36 DDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred CCEEECCCCEEEeCCCCEEEEEe
Confidence 35688888888888777777655
No 178
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=37.89 E-value=74 Score=18.97 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=22.6
Q ss_pred eEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 12 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 12 ~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
...+|++|.+.+.+..++.....+......+++++|.+
T Consensus 113 ~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 150 (171)
T cd02969 113 FFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDA 150 (171)
T ss_pred EEEECCCCeEEEeecccCCcccccccccHHHHHHHHHH
Confidence 44456677666666555443332345677778887765
No 179
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=37.50 E-value=44 Score=14.97 Aligned_cols=20 Identities=10% Similarity=-0.154 Sum_probs=12.4
Q ss_pred CCCeEEcCceEEEecCCeEEEE
Q psy5015 3 GYACGLKQDQFVLREDGYGQVV 24 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~ 24 (94)
...-|..||++.. +|.++..
T Consensus 6 ~~~~Y~~Gd~V~~--~g~~y~a 25 (41)
T PF02839_consen 6 PGTTYNAGDRVSY--NGKLYQA 25 (41)
T ss_dssp TTCEE-TT-EEEE--TTEEEEE
T ss_pred CCCEEcCCCEEEE--CCCEEEE
Confidence 4556889999987 4666643
No 180
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=37.43 E-value=51 Score=16.72 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.2
Q ss_pred hHHHHHHHhcCCCeeeEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v 58 (94)
..+|++.|.+.|++.++-|
T Consensus 54 ~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 54 REEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHHTSTT-SEEEE
T ss_pred HHHHHHHHHhCCCCceEeC
Confidence 3578888888899877643
No 181
>PHA03247 large tegument protein UL36; Provisional
Probab=37.23 E-value=2.8e+02 Score=25.35 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=45.6
Q ss_pred CCCeEEcCceEEE-ecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 3 GYACGLKQDQFVL-REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~-~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+-+.|++||..++ |+-| .|+...-+. .++++.++-..|..+..- .+...+.-.++-||...++ .
T Consensus 147 g~avyr~~d~~yiFDPHg----~~~~s~A~V---~~~~~~evY~yLt~y~~~-------~~e~~w~aa~VyFv~~~~~-~ 211 (3151)
T PHA03247 147 GMGLYRDGDTAYLFDPHG----LREGSPAFV---AKVRAGEVYTYLTYYTQD-------HPEARWAGAMVFFVPSGPG-P 211 (3151)
T ss_pred eeEEEEcCCeeEEeCCCC----CCCCCceeE---EEecHHHHHHHHHhhcCC-------CCccceeeeEEEEEecCCC-C
Confidence 3467999998886 6666 455555554 789999999999765321 1223344345555555443 4
Q ss_pred CCHHHHHHHH
Q psy5015 82 LNADDIRTFC 91 (94)
Q Consensus 82 ~~~~~l~~~l 91 (94)
...++|....
T Consensus 212 ~~~~~L~sAv 221 (3151)
T PHA03247 212 AAPADLTAAA 221 (3151)
T ss_pred CCHHHHHHHH
Confidence 5666666543
No 182
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=36.93 E-value=51 Score=19.52 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=23.9
Q ss_pred CCCeEEcCceEEEecC--CeEEEEeecCCeEEe
Q psy5015 3 GYACGLKQDQFVLRED--GYGQVVGRIKDMIIR 33 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~--G~~~~~GR~~d~i~~ 33 (94)
++--|+.||-+++.++ |.-+++||...+++.
T Consensus 8 ~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~ 40 (135)
T cd04710 8 NGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPK 40 (135)
T ss_pred CCeEEeCCCEEEEecCCCCCCCEEEEEEEEEec
Confidence 4456999999999754 666789998887664
No 183
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=36.11 E-value=65 Score=19.67 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=23.5
Q ss_pred EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeee
Q psy5015 7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE 55 (94)
Q Consensus 7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 55 (94)
||--|++.+|= +|.+|.. ..|+++.|++++ ++|.|.+
T Consensus 86 YrfEDIdvLDLRVCYNGEWy~t-----------r~vs~~ai~~iL-~~p~V~~ 126 (155)
T PF10777_consen 86 YRFEDIDVLDLRVCYNGEWYNT-----------RFVSDQAIDKIL-QSPQVPD 126 (155)
T ss_pred eeecccCeeEEeEEEcceeeee-----------ccCCHHHHHHHH-cCCCCCH
Confidence 56667666542 4555543 468888888865 5666654
No 184
>PLN02384 ribose-5-phosphate isomerase
Probab=36.05 E-value=1.3e+02 Score=20.07 Aligned_cols=39 Identities=18% Similarity=-0.032 Sum_probs=25.5
Q ss_pred EEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEE
Q psy5015 13 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 57 (94)
.++.++|++.+--.-. +.--.|.+++..|.+.|+|-+.=
T Consensus 204 p~vTDnGN~IlD~~f~------~~i~dp~~l~~~L~~ipGVVE~G 242 (264)
T PLN02384 204 PFVTDNGNYIVDLYFK------RDIGDLKVASDAILRLAGVVEHG 242 (264)
T ss_pred cEECCCCCEEEEecCC------CCCCCHHHHHHHHhCCCcEeccC
Confidence 3566677665432221 11238999999999999998763
No 185
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=35.96 E-value=41 Score=20.68 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=20.0
Q ss_pred CeEEcCceEEEe-cCCeEEEEeecCCeEE
Q psy5015 5 ACGLKQDQFVLR-EDGYGQVVGRIKDMII 32 (94)
Q Consensus 5 ~~~~TGD~~~~~-~~G~~~~~GR~~d~i~ 32 (94)
..|+.||.+++. +.+.-+.++|...+.+
T Consensus 2 ~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~ 30 (164)
T cd04709 2 NMYRVGDYVYFESSPNNPYLIRRIEELNK 30 (164)
T ss_pred cEEecCCEEEEECCCCCCCEEEEEEEEEe
Confidence 368999999997 3454577788766554
No 186
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=35.19 E-value=24 Score=17.42 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=9.3
Q ss_pred EEcCceEEEecCC
Q psy5015 7 GLKQDQFVLREDG 19 (94)
Q Consensus 7 ~~TGD~~~~~~~G 19 (94)
|.+||++.+-..|
T Consensus 1 f~~GDvV~LKSGG 13 (53)
T PF09926_consen 1 FKIGDVVQLKSGG 13 (53)
T ss_pred CCCCCEEEEccCC
Confidence 5678888876555
No 187
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=35.08 E-value=64 Score=18.20 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=27.4
Q ss_pred eEEcCceEEEecCCeEEEEee-c--CCeEEeCcEEeChHHHHHHHhcCCCe
Q psy5015 6 CGLKQDQFVLREDGYGQVVGR-I--KDMIIRGGENIYPKEIEEFIQTHPNV 53 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR-~--~d~i~~~G~~v~~~~iE~~l~~~~~v 53 (94)
.|.++|.. +|..|..|.+-. . .......+..+++.++-+.+++|...
T Consensus 30 ~~~~~D~L-IDs~G~~y~l~~~~~~~~~l~~~~~~lsl~ev~~LIq~H~~~ 79 (101)
T PF13642_consen 30 IWSDDDRL-IDSQGQSYQLKQSNSNKLSLQPSSQQLSLEEVTELIQAHAFS 79 (101)
T ss_dssp ---TT--E-EETT-EEEEE-T-----TSSEEEEEE--HHHHHHHHHHHHHH
T ss_pred CCCCCCEE-EeCCCCEEEeccccccchhcccCCCcccHHHHHHHHHHHHHh
Confidence 35667766 588998887755 2 23444678999999999999998543
No 188
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=34.62 E-value=74 Score=16.85 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=15.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIK 28 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~ 28 (94)
.|.++.|+..++.+++.+.+.|..+
T Consensus 24 ~G~l~~g~~v~vlr~~~~~~~g~i~ 48 (84)
T cd03692 24 DGKIKRNAKVRVLRNGEVIYEGKIS 48 (84)
T ss_pred ECEEeCCCEEEEEcCCCEEEEEEEE
Confidence 3566777777777766655555433
No 189
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=34.61 E-value=54 Score=21.44 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred eEEEecCCeEEEEeec-------CCeEEeCcEEeChHHHHH-HHhcCCCeeeEEEE
Q psy5015 12 QFVLREDGYGQVVGRI-------KDMIIRGGENIYPKEIEE-FIQTHPNVLEAYAY 59 (94)
Q Consensus 12 ~~~~~~~G~~~~~GR~-------~d~i~~~G~~v~~~~iE~-~l~~~~~v~~~~v~ 59 (94)
...+.++|.|.|.|.. +..|++.|. |-|.+|+. ---.+..|.|+-+.
T Consensus 153 V~~VLpNGNL~I~G~Kev~vN~~~e~i~vsGv-VRP~DI~~~NtI~S~~IAdARI~ 207 (230)
T COG2063 153 VVQVLPNGNLVIEGEKEVRVNGEKEIIRVSGV-VRPDDISGDNTISSTRIADARIE 207 (230)
T ss_pred EEEEcCCCCEEEEEEEEEEECCceEEEEEeee-EcccccCCCCeecchheeeeEEE
Confidence 4456789999999976 455566654 78888873 11234456666554
No 190
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=34.38 E-value=39 Score=13.41 Aligned_cols=11 Identities=18% Similarity=-0.040 Sum_probs=7.1
Q ss_pred EEecCCeEEEE
Q psy5015 14 VLREDGYGQVV 24 (94)
Q Consensus 14 ~~~~~G~~~~~ 24 (94)
..|.+|.+++-
T Consensus 11 ~~D~~G~lWig 21 (24)
T PF07494_consen 11 YEDSDGNLWIG 21 (24)
T ss_dssp EE-TTSCEEEE
T ss_pred EEcCCcCEEEE
Confidence 35778888874
No 191
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=34.14 E-value=62 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.9
Q ss_pred eEEcCceEEEecCCeEEEEee
Q psy5015 6 CGLKQDQFVLREDGYGQVVGR 26 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR 26 (94)
|.-++|.|.++.+..+++.|-
T Consensus 95 W~v~A~~a~l~~d~~l~L~gn 115 (192)
T PRK10893 95 WSVRADKAKLTNDRMLYLYGH 115 (192)
T ss_pred EEEEeCeEEECCCCEEEEECC
Confidence 999999999998877877764
No 192
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=34.11 E-value=70 Score=16.87 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=13.5
Q ss_pred EEcCceEEE----ecCCeEEEEeec
Q psy5015 7 GLKQDQFVL----REDGYGQVVGRI 27 (94)
Q Consensus 7 ~~TGD~~~~----~~~G~~~~~GR~ 27 (94)
|+.||..++ +.+|++++....
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~~ 27 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYID 27 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEEC
Confidence 667776654 456777766653
No 193
>PF07193 DUF1408: Protein of unknown function (DUF1408); InterPro: IPR009848 This entry is represented by Bacteriophage bIL285, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Lactococcus lactis and related phage proteins of around 75 residues in length. The function of this family is unknown.
Probab=34.09 E-value=51 Score=17.06 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=11.2
Q ss_pred ecCCeEEEEeecCC
Q psy5015 16 REDGYGQVVGRIKD 29 (94)
Q Consensus 16 ~~~G~~~~~GR~~d 29 (94)
.+||.+|+..|++.
T Consensus 41 r~dgs~y~~~r~~~ 54 (75)
T PF07193_consen 41 RPDGSMYMTSRKKN 54 (75)
T ss_pred cCCCeEEEEEcccc
Confidence 57899999988754
No 194
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=33.44 E-value=71 Score=20.83 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=22.0
Q ss_pred eEEEecCCeEEEEeec-------CCeEEeCcEEeChHHHH
Q psy5015 12 QFVLREDGYGQVVGRI-------KDMIIRGGENIYPKEIE 44 (94)
Q Consensus 12 ~~~~~~~G~~~~~GR~-------~d~i~~~G~~v~~~~iE 44 (94)
+..+.++|.|.|.|++ ++.|.+.|. |-|.+|.
T Consensus 150 V~~VlpNGNLvI~GeK~i~vN~~~e~irlsGi-VRP~DI~ 188 (230)
T PRK12700 150 VIGVLPNGNLQIAGEKQIAINRGSEYVRFSGV-VDPRSIT 188 (230)
T ss_pred EEEECCCCCEEEEEEEEEEECCCEEEEEEEEE-ECHHHCC
Confidence 4456789999999976 344445543 7777775
No 195
>PRK05529 cell division protein FtsQ; Provisional
Probab=33.35 E-value=77 Score=20.76 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=21.1
Q ss_pred EEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 36 ENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 36 ~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
..+++..+++.+.++|.|+++.|.-
T Consensus 92 ~~vd~~~~~~~l~~~P~V~sa~V~r 116 (255)
T PRK05529 92 PLVDPETVRKKLAAFPLIRSYSVES 116 (255)
T ss_pred eeECHHHHHHHHhcCCCEeEEEEEE
Confidence 4678999999999999999887753
No 196
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=32.95 E-value=1.1e+02 Score=19.73 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCeeeEEEEEeeCCCC-CceEEEEEEEcCCC
Q psy5015 41 KEIEEFIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENA 80 (94)
Q Consensus 41 ~~iE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~ 80 (94)
.++++.+++.|++.++.-+-....+. .-...+.+..+++.
T Consensus 208 ~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~ 248 (284)
T PF01545_consen 208 EKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDM 248 (284)
T ss_dssp HHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTS
T ss_pred hHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCC
Confidence 67778888888887766554443333 22344555555543
No 197
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=32.80 E-value=1.3e+02 Score=19.08 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=26.6
Q ss_pred EEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEE
Q psy5015 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 14 ~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 59 (94)
.+.++|++.+--.-++. -.|.+++..|.+.|+|.+.-.+
T Consensus 164 ~~Td~gn~i~D~~~~~~-------~~~~~l~~~l~~i~GVve~GlF 202 (213)
T cd01398 164 VVTDNGNYILDVHFGTI-------EDPEALEKELKSIPGVVEHGLF 202 (213)
T ss_pred EECCCCCEEEEecCCCC-------CCHHHHHHHHhcCCCeeeeCCC
Confidence 44566666554343322 4899999999999999876444
No 198
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.64 E-value=43 Score=15.90 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.4
Q ss_pred EeCcEEeChHHHHHHHhcC
Q psy5015 32 IRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 32 ~~~G~~v~~~~iE~~l~~~ 50 (94)
+-.|.++++..++.++...
T Consensus 29 ~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 29 QQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HHcCcccCHHHHHHHHHHc
Confidence 4579999999999988653
No 199
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.43 E-value=60 Score=18.10 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEeCcEEeChHHHHHHHhcCCCee
Q psy5015 31 IIRGGENIYPKEIEEFIQTHPNVL 54 (94)
Q Consensus 31 i~~~G~~v~~~~iE~~l~~~~~v~ 54 (94)
|.+.|.++.-.+|+..|.+..++.
T Consensus 53 itIeG~~ldydei~~~iE~~Gg~I 76 (97)
T COG1888 53 ITIEGTNLDYDEIEEVIEELGGAI 76 (97)
T ss_pred EEEEcCCCCHHHHHHHHHHcCCee
Confidence 457899999999999999987653
No 200
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=32.30 E-value=67 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=28.8
Q ss_pred ecCCeEE--eCcEEeChHHHHHHHhcCCCeeeEEEEEee
Q psy5015 26 RIKDMII--RGGENIYPKEIEEFIQTHPNVLEAYAYGVP 62 (94)
Q Consensus 26 R~~d~i~--~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 62 (94)
|...+|+ +........++|+.|.+.-++.+|.|++.+
T Consensus 51 r~~GiV~I~i~~~~~~~~~Le~~L~~~fgL~~a~VVp~~ 89 (321)
T COG2390 51 REEGIVKISINSPVEGCLELEQQLKERFGLKEAIVVPSD 89 (321)
T ss_pred HHCCeEEEEeCCCCcchHHHHHHHHHhcCCCeEEEEcCC
Confidence 4444555 566777788899999999999999998764
No 201
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=32.22 E-value=1.1e+02 Score=18.34 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.5
Q ss_pred CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 18 ~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
+|.+.+.|| +++..|+++|...
T Consensus 77 ~~~lii~G~-----------~~~~~i~~~L~~y 98 (138)
T PRK03988 77 GGRLILQGK-----------FSPRVINEKIDRY 98 (138)
T ss_pred CCEEEEEEe-----------eCHHHHHHHHHHH
Confidence 455666555 8899999999874
No 202
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=32.07 E-value=76 Score=19.69 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=21.3
Q ss_pred ceEEEecCCeEEEEeecCCeEEeCcE--------EeChHHHH
Q psy5015 11 DQFVLREDGYGQVVGRIKDMIIRGGE--------NIYPKEIE 44 (94)
Q Consensus 11 D~~~~~~~G~~~~~GR~~d~i~~~G~--------~v~~~~iE 44 (94)
-+..+.++|.|.|.|+.. |++++. -|.|.+|.
T Consensus 99 ~Vv~VlpNGnL~I~G~k~--i~vn~e~~~i~lsGiVRp~DI~ 138 (179)
T PF02107_consen 99 RVVEVLPNGNLVIEGEKQ--IRVNGEEQYIRLSGIVRPEDID 138 (179)
T ss_pred EEEEECCCCcEEEEEEEE--EEECCCEEEEEEEEEECHHHCC
Confidence 345567899999999874 333332 36777765
No 203
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=31.82 E-value=59 Score=19.86 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=28.0
Q ss_pred eEEEEeecCCeEEeCcEEeChHHHHHHHhcCCC
Q psy5015 20 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN 52 (94)
Q Consensus 20 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 52 (94)
.+..+|+.|+. .+.|..|--..+--.|..||.
T Consensus 117 ~l~WL~~~d~~-sidg~tvl~aaltgsl~nhp~ 148 (153)
T PRK09993 117 KLTWLNVNDAL-SIDGKTVLFAALTGSLENHPD 148 (153)
T ss_pred heeeecCCCCc-ccccceeeHHhhhCchhcCcc
Confidence 47788998887 899999999999999998885
No 204
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=31.63 E-value=1.6e+02 Score=19.54 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCeEEeCcEEeCh------------HHHHHHHhcCCCeeeEEEEEeeC---CCC-C---ceEEEEEEEcCCCCCC--HHH
Q psy5015 28 KDMIIRGGENIYP------------KEIEEFIQTHPNVLEAYAYGVPD---ERM-G---EEVGISIKLKENAKLN--ADD 86 (94)
Q Consensus 28 ~d~i~~~G~~v~~------------~~iE~~l~~~~~v~~~~v~~~~~---~~~-~---~~~~~~v~~~~~~~~~--~~~ 86 (94)
+|++.-+|.-.+| +++|+.|...++|..|-|-..-. +.+ . ....+++.-.++.+.+ ..+
T Consensus 87 ~d~Fp~dgLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~ 166 (246)
T COG4669 87 GDIFPKDGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQ 166 (246)
T ss_pred HHhCCcccccCCcHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHH
Confidence 3455555555555 46889999999999988766522 111 1 1344666666554433 356
Q ss_pred HHHHHh
Q psy5015 87 IRTFCK 92 (94)
Q Consensus 87 l~~~l~ 92 (94)
|++.++
T Consensus 167 IK~LV~ 172 (246)
T COG4669 167 IKRLVA 172 (246)
T ss_pred HHHHHH
Confidence 666654
No 205
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=31.50 E-value=26 Score=21.36 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=12.3
Q ss_pred CCCCCeEEcCceEEE
Q psy5015 1 MDGYACGLKQDQFVL 15 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~ 15 (94)
+|...||.|.|++.+
T Consensus 67 ~D~k~~yKtaDI~QM 81 (162)
T cd08047 67 LDKKNLYKTADISQM 81 (162)
T ss_pred cccCceEEecChhhE
Confidence 356789999999977
No 206
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=31.41 E-value=1.2e+02 Score=23.09 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=28.9
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 51 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 51 (94)
++.++||+.++|-+++ .+.|- =+++-.....++|+|.+..|.+-+
T Consensus 553 alVrdGD~I~IDi~~r-~l~g~-~~~~~~~~~~~~~~~~~~~l~~r~ 597 (640)
T TIGR03432 553 GKVRDGDLIEIIIDRN-TLEGT-VNLVGTEDGNQLPEEGAAVLAARP 597 (640)
T ss_pred EEEeCCCEEEEEcCCC-eEEEE-EEEEecccccCChHHHHHHHhcCC
Confidence 4789999999975532 11111 112223457789999999998743
No 207
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=31.40 E-value=96 Score=17.01 Aligned_cols=25 Identities=16% Similarity=-0.040 Sum_probs=20.6
Q ss_pred EeChHHHHHHHhcCCCeeeEEEEEe
Q psy5015 37 NIYPKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 37 ~v~~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
..+..++|+.+.+.++|+.+-+...
T Consensus 61 ~g~td~lee~i~~ve~V~svev~~~ 85 (88)
T TIGR00489 61 EGGTEAAEESLSGIEGVESVEVTDV 85 (88)
T ss_pred CcChHHHHHHHhcCCCccEEEEEEE
Confidence 3678999999999999988776644
No 208
>PRK10775 cell division protein FtsQ; Provisional
Probab=31.26 E-value=85 Score=20.89 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.7
Q ss_pred EeChHHHHHHHhcCCCeeeEEEE
Q psy5015 37 NIYPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 37 ~v~~~~iE~~l~~~~~v~~~~v~ 59 (94)
.+++..+++.+.++|.|.++.|-
T Consensus 90 ~~Dl~~i~~~l~~lPWV~~a~Vr 112 (276)
T PRK10775 90 TQDVNIIQQQIERLPWIKQVSVR 112 (276)
T ss_pred EEcHHHHHHHHHcCCCeeEEEEE
Confidence 67899999999999999998774
No 209
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=31.24 E-value=48 Score=18.66 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=21.6
Q ss_pred EEcCceEEEecCCeE-------EEEeecCCeEEeCc
Q psy5015 7 GLKQDQFVLREDGYG-------QVVGRIKDMIIRGG 35 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~-------~~~GR~~d~i~~~G 35 (94)
|.-||.+.++-|..+ +|.|++.-++-..|
T Consensus 33 y~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g 68 (98)
T COG2139 33 YKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRG 68 (98)
T ss_pred ccCCCEEEEEeCcccccCCCCccccCcceEEEeccC
Confidence 778999998877654 48888877776655
No 210
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=31.00 E-value=84 Score=16.51 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.4
Q ss_pred EEEecCCeEEEEeecCCe
Q psy5015 13 FVLREDGYGQVVGRIKDM 30 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~ 30 (94)
..-+++|.|.+.|...+.
T Consensus 33 ~~Td~~G~F~l~G~~~e~ 50 (80)
T PF01060_consen 33 TKTDSDGNFELSGSTNEF 50 (80)
T ss_pred EEECCCceEEEEEEccCC
Confidence 445788999999998876
No 211
>COG5475 Uncharacterized small protein [Function unknown]
Probab=30.53 E-value=48 Score=16.70 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=15.1
Q ss_pred eEEcCceEEEecCC-eEEEEeec
Q psy5015 6 CGLKQDQFVLREDG-YGQVVGRI 27 (94)
Q Consensus 6 ~~~TGD~~~~~~~G-~~~~~GR~ 27 (94)
-|.|||.+++-+.| .+.+.|=.
T Consensus 4 ~FstgdvV~lKsGGP~Mtvs~~s 26 (60)
T COG5475 4 SFSTGDVVTLKSGGPRMTVSGYS 26 (60)
T ss_pred eeecCcEEEeecCCceEEEeccc
Confidence 48899999997666 34455443
No 212
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=29.91 E-value=1.6e+02 Score=19.18 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=28.3
Q ss_pred eEEcC-ceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEE
Q psy5015 6 CGLKQ-DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57 (94)
Q Consensus 6 ~~~TG-D~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 57 (94)
+.|.. +-.++.++|++.+--+-. .-..|.+++..|.+.|+|-+.=
T Consensus 161 ~~R~~~~~p~vTDnGN~IlD~~f~-------~i~dp~~l~~~L~~ipGVVe~G 206 (228)
T PRK13978 161 ERRVNEDVAFITDNGNYILDCKLP-------KGIDPYKFHEYLIHLTGVFETG 206 (228)
T ss_pred EEEecCCCceECCCCcEEEEecCC-------CcCCHHHHHHHHhcCCcEeeeC
Confidence 45533 223456667665443322 2237999999999999998763
No 213
>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex
Probab=29.70 E-value=34 Score=21.00 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=12.1
Q ss_pred CCCCCeEEcCceEEE
Q psy5015 1 MDGYACGLKQDQFVL 15 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~ 15 (94)
+|...||.|+|++.+
T Consensus 69 ~D~k~~yKtaDI~QM 83 (162)
T PF04658_consen 69 LDKKNFYKTADISQM 83 (162)
T ss_pred cccCeEEEEecccee
Confidence 356679999999976
No 214
>PF01948 PyrI: Aspartate carbamoyltransferase regulatory chain, allosteric domain; InterPro: IPR020545 Aspartate carbamoyltransferase (aspartate transcarbamylase, ATCase) 2.1.3.2 from EC is an allosteric enzyme that plays a central role in the regulation of the pyrimidine pathway in bacteria. The holoenzyme is a dodecamer composed of six catalytic chains, each with an active site, and six regulatory chains lacking catalytic activity []. The catalytic subunits exist as a dimer of catalytic trimers, (c3)2, while the regulatory subunits exist as a trimer of regulatory dimers, (r2)3, therefore the complete holoenzyme can be represented as (c3)2(r2)3. The association of the catalytic subunits c3 with the regulatory subunits r2 is responsible for the establishment of positive co-operativity between catalytic sites for the binding of aspartate and it dictates the pattern of allosteric response toward nucleotide effectors. ATCase from Escherichia coli is the most extensively studied allosteric enzyme []. The crystal structure of the T-state, the T-state with CTP bound, the R-state with N-phosphonacetyl-L-aspartate (PALA) bound, and the R-state with phosphonoacetamide plus malonate bound have been used in interpreting kinetic and mutational studies. A high-resolution structure of E. coli ATCase in the presence of PALA (a bisubstrate analog) allows a detailed description of the binding at the active site of the enzyme and allows a detailed model of the tetrahedral intermediate to be constructed. The entire regulatory chain has been traced showing that the N-terminal regions of the regulatory chains R1 and R6 are located in close proximity to each other and to the regulatory site. This portion of the molecule may be involved in the observed asymmetry between the regulatory binding sites as well as in the heterotropic response of the enzyme []. The C-terminal domain of the regulatory chains have a rubredoxin-like zinc-bound fold. ATCase from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) differs from the other investigated enterobacterial ATCases by its absence of homotropic co-operativity toward the substrate aspartate and its lack of response to ATP which is an allosteric effector (activator) of this family of enzymes. Nevertheless, the E. herbicola ATCase has the same quaternary structure, two trimers of catalytic chains with three dimers of regulatory chains, (c3)2(r2)3, as other enterobacterial ATCases and shows extensive primary structure conservation []. ; PDB: 2BE9_B 1PG5_B 1SKU_D 1Q95_L 8ATC_B 3AT1_D 1RAI_D 4E2F_D 1NBE_B 6AT1_B ....
Probab=29.50 E-value=73 Score=17.87 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=18.9
Q ss_pred eecCCeEEeCcEEeChHHHHHHHhcCCCe
Q psy5015 25 GRIKDMIIRGGENIYPKEIEEFIQTHPNV 53 (94)
Q Consensus 25 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v 53 (94)
|| +|+||+.|..++..++...-.=-|.+
T Consensus 51 G~-KDIIKIe~~~l~~~e~~~laliaP~a 78 (96)
T PF01948_consen 51 GK-KDIIKIEGRFLSDEELDKLALIAPNA 78 (96)
T ss_dssp EE-EEEEEEETC--SHHHHHHHCCTSTT-
T ss_pred Cc-CCEEEECCccCCHhHhheeEEECCCC
Confidence 66 89999999998888877654434554
No 215
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=29.48 E-value=52 Score=16.74 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=28.2
Q ss_pred eCcEEeChHHHHHHHhcC--CCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 33 RGGENIYPKEIEEFIQTH--PNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 33 ~~G~~v~~~~iE~~l~~~--~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
+.|..+++.+|+..|..- +.+. +... ..|..-.|.+++.++.
T Consensus 11 i~gk~lt~~~~~~Ll~~gkT~~ik-----GF~S-K~Gk~F~A~L~l~~~~ 54 (62)
T PF13342_consen 11 IAGKKLTDEEVKELLEKGKTGLIK-----GFKS-KKGKPFDAYLVLDDDK 54 (62)
T ss_pred EcCCCCCHHHHHHHHHcCCccCcc-----Cccc-CCCCEEeEEEEEcCCC
Confidence 789999999999999763 2222 2222 3455677888876653
No 216
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.
Probab=29.08 E-value=19 Score=20.08 Aligned_cols=7 Identities=0% Similarity=-0.273 Sum_probs=5.2
Q ss_pred CeEEcCc
Q psy5015 5 ACGLKQD 11 (94)
Q Consensus 5 ~~~~TGD 11 (94)
|||+|+-
T Consensus 85 GWY~s~p 91 (114)
T PF01398_consen 85 GWYHSHP 91 (114)
T ss_dssp EEEEEES
T ss_pred EEEEccC
Confidence 7888764
No 217
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=29.04 E-value=46 Score=17.53 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=21.1
Q ss_pred eEEEEeecCCeEEeCcEEeChHHHHHHHhcCCC
Q psy5015 20 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN 52 (94)
Q Consensus 20 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 52 (94)
.++=+||.- .| .=..+++++|+.++.++|.
T Consensus 37 ~vF~~~rkP-WI--~Pd~~~ve~i~~vi~sCPS 66 (74)
T COG3592 37 KVFNLGRKP-WI--MPDAVDVEEIVKVIDTCPS 66 (74)
T ss_pred hhcccCCCC-cc--CCCCCCHHHHHHHHHhCCc
Confidence 344467765 33 2346889999999999985
No 218
>PRK00907 hypothetical protein; Provisional
Probab=28.89 E-value=1.1e+02 Score=16.91 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=27.9
Q ss_pred ChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 39 YPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 39 ~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
....|.+++..| |...+..+. ...+..|....+-+...-......++|-+.|++
T Consensus 30 l~~~V~~vv~~h~p~~~~~~i~-~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~ 84 (92)
T PRK00907 30 LETELPRLLAATGVELLQERIS-WKHSSSGKYVSVRIGFRAESREQYDAAHQALRD 84 (92)
T ss_pred HHHHHHHHHHHhCCCCCcCcEE-eccCCCCEEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 467777888876 555444443 344456665554444432222233445555543
No 219
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=28.79 E-value=38 Score=18.11 Aligned_cols=14 Identities=0% Similarity=-0.401 Sum_probs=11.3
Q ss_pred CCCeEEcCceEEEe
Q psy5015 3 GYACGLKQDQFVLR 16 (94)
Q Consensus 3 ~~~~~~TGD~~~~~ 16 (94)
.+|||.+||-|.++
T Consensus 38 mdGYy~agngG~i~ 51 (80)
T PF12433_consen 38 MDGYYAAGNGGWID 51 (80)
T ss_pred CCceEEcCCCceee
Confidence 36899999988775
No 220
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=28.35 E-value=1.4e+02 Score=17.94 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.8
Q ss_pred hHHHHHHHhcCCCeeeEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~ 59 (94)
..++.+.+.++|.|.+|+.+
T Consensus 90 ~~~~~~~l~~~p~V~~~~~v 109 (164)
T PRK11169 90 FEQFNAAVQKLEEIQECHLV 109 (164)
T ss_pred HHHHHHHHhcCcceeeeeee
Confidence 35566788899999998875
No 221
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=28.22 E-value=87 Score=17.97 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=19.0
Q ss_pred CeEEcCceEEEecCC--eEEEEeecCCeEE
Q psy5015 5 ACGLKQDQFVLREDG--YGQVVGRIKDMII 32 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G--~~~~~GR~~d~i~ 32 (94)
.-|+.||.+.+..++ .--++||...+.+
T Consensus 2 ~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e 31 (121)
T cd04714 2 EIIRVGDCVLFKSPGRPSLPYVARIESLWE 31 (121)
T ss_pred CEEEcCCEEEEeCCCCCCCCEEEEEEEEEE
Confidence 468999999997654 3345777655544
No 222
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=58 Score=18.91 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=17.0
Q ss_pred eCc--EEeChHHHHHHHhcCCCe
Q psy5015 33 RGG--ENIYPKEIEEFIQTHPNV 53 (94)
Q Consensus 33 ~~G--~~v~~~~iE~~l~~~~~v 53 (94)
--| ++++|+|+|..+..-|.+
T Consensus 42 K~GTSHkl~~eEle~~lee~~E~ 64 (121)
T COG1504 42 KYGTSHKLALEELEELLEEGPEV 64 (121)
T ss_pred hcCcccccCHHHHHHHHhcCCcE
Confidence 346 999999999999876654
No 223
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=28.11 E-value=40 Score=20.18 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEeec--CCeEEeCcEEeChHH
Q psy5015 21 GQVVGRI--KDMIIRGGENIYPKE 42 (94)
Q Consensus 21 ~~~~GR~--~d~i~~~G~~v~~~~ 42 (94)
..+.||. =++||++|+.|++.+
T Consensus 107 ~sLKgRLl~i~~iKVdge~Vy~~~ 130 (137)
T PF12101_consen 107 ASLKGRLLKIKWIKVDGELVYKAE 130 (137)
T ss_pred eeeEEEEEEEEEEEECCEEEecCC
Confidence 5678887 478999999999875
No 224
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=28.10 E-value=96 Score=22.39 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=33.0
Q ss_pred EeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEE
Q psy5015 32 IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74 (94)
Q Consensus 32 ~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 74 (94)
+..|..|.|.+..+.+.....+..+..-.++..++++...+++
T Consensus 373 ~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~ 415 (454)
T TIGR01219 373 EEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAIT 415 (454)
T ss_pred HhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEe
Confidence 4568899999999998877677666555667777888777664
No 225
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=27.77 E-value=2.5e+02 Score=20.73 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=31.6
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEe-eCC----CCCceEEEEE--EEcCCCCCCHHHHH
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGV-PDE----RMGEEVGISI--KLKENAKLNADDIR 88 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~-~~~----~~~~~~~~~v--~~~~~~~~~~~~l~ 88 (94)
--.|++..|.++++|..|.|... |.. .....+.|-| .++++..++.+++.
T Consensus 136 legELartI~~i~~V~~ArVhl~lP~~s~F~~~~~~~tASV~l~l~~g~~L~~~qV~ 192 (542)
T PRK06007 136 LEGELARTIESLDGVKAARVHLALPKESVFVREQQPPSASVVLTLKPGRALDPEQVK 192 (542)
T ss_pred HHHHHHHHHHhcCCcceeEEEEECCCCccccccCCCCcEEEEEeccCCCCCCHHHHH
Confidence 34688899999999999988654 321 1122344444 45666677776653
No 226
>KOG2975|consensus
Probab=27.70 E-value=25 Score=23.50 Aligned_cols=8 Identities=0% Similarity=-0.218 Sum_probs=6.4
Q ss_pred CeEEcCce
Q psy5015 5 ACGLKQDQ 12 (94)
Q Consensus 5 ~~~~TGD~ 12 (94)
|||.||--
T Consensus 102 GWyaTg~d 109 (288)
T KOG2975|consen 102 GWYATGHD 109 (288)
T ss_pred EEEecCCC
Confidence 89999943
No 227
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=27.24 E-value=1.3e+02 Score=17.70 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=16.2
Q ss_pred CeEEeCcEEeChHHHHHHHhcC
Q psy5015 29 DMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 29 d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
..+.++|..++..++++.|.+.
T Consensus 72 g~i~~~~~~v~~~~L~~~L~~~ 93 (141)
T PRK11267 72 NSMFIGNDPVTDETMITALDAL 93 (141)
T ss_pred CCEEECCccccHHHHHHHHHHH
Confidence 3445588889999988887763
No 228
>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function. ; PDB: 2K0M_A.
Probab=27.12 E-value=1.1e+02 Score=16.19 Aligned_cols=48 Identities=13% Similarity=0.240 Sum_probs=24.9
Q ss_pred CcEEeChHH----HHHHHhcCCCeee------EEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 34 GGENIYPKE----IEEFIQTHPNVLE------AYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 34 ~G~~v~~~~----iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
.|.+++..+ ++.+|.-||...+ ..+....++..+..-+.+|+-.++..
T Consensus 10 ~g~~l~~~d~~~~l~~ll~~HP~~~~KiG~Gi~~i~V~~hp~~~~srCF~vvR~DGs~ 67 (76)
T PF11523_consen 10 DGERLSEEDEKSVLEALLKYHPEAEEKIGCGIDHIMVRKHPEFKDSRCFFVVRTDGSE 67 (76)
T ss_dssp TTEE--HHH-HHHHHHHHHTSTTHHHHHTT-EEEEEEEESSSS---EEEEEEETTS-E
T ss_pred CcCCcCHHHHHHHHHHHHHhCCcHHHhhcCCeeeEEEeecCCCCcceEEEEEEeCCCe
Confidence 467777776 6777888885321 11222345555556777777766643
No 229
>cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of Mycobacterium tuberculosis LigC and similar ba
Probab=26.92 E-value=78 Score=18.24 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.6
Q ss_pred eEEEecCCeEEEEeec
Q psy5015 12 QFVLREDGYGQVVGRI 27 (94)
Q Consensus 12 ~~~~~~~G~~~~~GR~ 27 (94)
+|.++++|.|.++||.
T Consensus 22 Lg~~~~~g~l~yvG~v 37 (122)
T cd07970 22 LGLYDDGGRLRHVGRT 37 (122)
T ss_pred EEEECCCCCEEEEEEE
Confidence 3445556678888884
No 230
>KOG3050|consensus
Probab=26.83 E-value=27 Score=23.19 Aligned_cols=10 Identities=0% Similarity=-0.300 Sum_probs=8.3
Q ss_pred CeEEcCceEE
Q psy5015 5 ACGLKQDQFV 14 (94)
Q Consensus 5 ~~~~TGD~~~ 14 (94)
|||.||+-..
T Consensus 94 GwYttG~d~t 103 (299)
T KOG3050|consen 94 GWYTTGSDPT 103 (299)
T ss_pred EEeecCCCCC
Confidence 8999998764
No 231
>PF01611 Filo_glycop: Filovirus glycoprotein; InterPro: IPR002561 This entry represents an extracellular domain from the envelope glycoprotein of Ebola virus sp. and Lake Victoria marburgvirus. The extracellular domain is also produced as a separate transcript that gives rise to a non-structural, secreted glycoprotein, which is produced in large amounts and has an unknown function []. Processing of the protein may be involved in viral pathogenicity [].; PDB: 3VE0_I 3CSY_O 3S88_I.
Probab=26.79 E-value=52 Score=22.66 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=21.6
Q ss_pred cCceEEEecCCeEEEEeecCCeEEeCcEE---------eChHHHHHHHhcCC
Q psy5015 9 KQDQFVLREDGYGQVVGRIKDMIIRGGEN---------IYPKEIEEFIQTHP 51 (94)
Q Consensus 9 TGD~~~~~~~G~~~~~GR~~d~i~~~G~~---------v~~~~iE~~l~~~~ 51 (94)
-||++. ..+|.|++-+|....+..+|.. |-|...+..+.+.|
T Consensus 134 pgg~Af-Hk~GAFFLYDRlASTviYRG~tFaEGvIAflIl~k~~~~f~~s~p 184 (364)
T PF01611_consen 134 PGGIAF-HKWGAFFLYDRLASTVIYRGTTFAEGVIAFLILPKTKKDFFQSPP 184 (364)
T ss_dssp -SSEEE-ETTS-EEEESSEEESS--TT-EBEEEEEEEEEESSS---------
T ss_pred CCccee-ecccceeeecccceeeEecceeeecceEEEEEcccchhhhhhCCC
Confidence 467774 4689999999999999988854 44455555554433
No 232
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=26.49 E-value=1e+02 Score=18.00 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=19.5
Q ss_pred eEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 12 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 12 ~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
-+.++++|.+.+.|| .++..|++.|..
T Consensus 62 ~~~id~~~~lii~G~-----------~~~~~i~~~L~~ 88 (125)
T PF01873_consen 62 QGSIDGKGRLIINGR-----------FSSKQIQDLLDK 88 (125)
T ss_dssp EEEEETTTEEEEESS-----------SSCCHHHHHHHH
T ss_pred ceEECCCCEEEEEEe-----------cCHHHHHHHHHH
Confidence 355666677777776 677889988866
No 233
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=26.27 E-value=1.2e+02 Score=16.59 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=20.8
Q ss_pred EeChHHHHHHHhcCCCeeeEEEEEe
Q psy5015 37 NIYPKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 37 ~v~~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
..+..++|+.+.+.++|+.+-+...
T Consensus 61 ~~~td~lee~i~~~e~Vqsvei~~~ 85 (88)
T PRK00435 61 EGGTEPVEEAFANVEGVESVEVEEV 85 (88)
T ss_pred CcCcHHHHHHHhccCCCcEEEEEEE
Confidence 5788999999999999888766654
No 234
>PRK04980 hypothetical protein; Provisional
Probab=26.19 E-value=1.3e+02 Score=17.00 Aligned_cols=54 Identities=15% Similarity=0.069 Sum_probs=34.9
Q ss_pred CeEEcCceEEEe--cCCeEEEEeecCCeEE------------eCcEEeChHHHHHHHhc-CCCeeeEEEEE
Q psy5015 5 ACGLKQDQFVLR--EDGYGQVVGRIKDMII------------RGGENIYPKEIEEFIQT-HPNVLEAYAYG 60 (94)
Q Consensus 5 ~~~~TGD~~~~~--~~G~~~~~GR~~d~i~------------~~G~~v~~~~iE~~l~~-~~~v~~~~v~~ 60 (94)
.-|.-||...+. ++|.++=.=+...+-. ..|. ++++..++|.. +|+.....++.
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~--sL~elk~~i~~iYp~~~~lyvI~ 98 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENM--TLPELKQVIAEIYPNLDQLYVIE 98 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCC--CHHHHHHHHHHHCCCCceEEEEE
Confidence 458889988885 6776552222222211 2366 89999999988 68876666653
No 235
>COG1781 PyrI Aspartate carbamoyltransferase, regulatory subunit [Nucleotide transport and metabolism]
Probab=26.08 E-value=69 Score=19.57 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=21.6
Q ss_pred eecCCeEEeCcEEeChHHHHHHHhcCCC
Q psy5015 25 GRIKDMIIRGGENIYPKEIEEFIQTHPN 52 (94)
Q Consensus 25 GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 52 (94)
|| +|+||+.|..++..|+..+-.-.|.
T Consensus 54 g~-KDiiKIE~~~L~~~e~~~laliaP~ 80 (153)
T COG1781 54 GR-KDIIKIEGRFLSEEEVNKLALIAPN 80 (153)
T ss_pred CC-CceEEECCeecCHHHhhhheeeCCC
Confidence 44 7899999999999999876554554
No 236
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=26.08 E-value=1.5e+02 Score=17.54 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=16.7
Q ss_pred hHHHHHHHhcCCCeeeEEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~ 60 (94)
..++.+.|.++|+|..|+.+.
T Consensus 83 ~~~~~~~l~~~p~V~~~~~~t 103 (153)
T PRK11179 83 YPSALAKLESLDEVVEAYYTT 103 (153)
T ss_pred HHHHHHHHhCCCCEEEEEEcc
Confidence 456777788999999988773
No 237
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=26.06 E-value=91 Score=19.12 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=27.1
Q ss_pred EcCceEEEecCCeEE---EEeecCCeEEeCcEEeChHHHHHHH
Q psy5015 8 LKQDQFVLREDGYGQ---VVGRIKDMIIRGGENIYPKEIEEFI 47 (94)
Q Consensus 8 ~TGD~~~~~~~G~~~---~~GR~~d~i~~~G~~v~~~~iE~~l 47 (94)
-+||+....++|.+. -..+..++++++|.+|....+|.-+
T Consensus 88 vmgg~~i~~~~g~~~~~~d~~~~~e~v~i~g~~IPv~sLe~e~ 130 (156)
T cd07749 88 IMGDVQKRLEDGWWETPVDLNRYKRFVEVEGMKIPVLSLEYEY 130 (156)
T ss_pred EeeceEEecCCCEEecccCchhhhheeeECCEEccCcCHHHHH
Confidence 356666666666543 3445667888899988888777655
No 238
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.73 E-value=14 Score=21.31 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=20.8
Q ss_pred eEEEEeecCCeEEeCcEEe-ChHHHHH
Q psy5015 20 YGQVVGRIKDMIIRGGENI-YPKEIEE 45 (94)
Q Consensus 20 ~~~~~GR~~d~i~~~G~~v-~~~~iE~ 45 (94)
.+.+-||...++.+.|.-+ .|.++|+
T Consensus 63 nfvisG~ISqi~~i~~~iv~e~seleq 89 (124)
T COG4835 63 NFVISGRISQINQIKDRIVKEPSELEQ 89 (124)
T ss_pred eeEEeeehHHHHHHHhHhccCHHHhhH
Confidence 4678899999998999888 6776664
No 239
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=25.51 E-value=31 Score=22.70 Aligned_cols=7 Identities=0% Similarity=-0.287 Sum_probs=6.3
Q ss_pred CeEEcCc
Q psy5015 5 ACGLKQD 11 (94)
Q Consensus 5 ~~~~TGD 11 (94)
|||.||-
T Consensus 80 GWY~tg~ 86 (265)
T cd08064 80 GWYATGS 86 (265)
T ss_pred eeeeCCC
Confidence 8999996
No 240
>KOG0117|consensus
Probab=25.31 E-value=2.7e+02 Score=20.42 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=31.8
Q ss_pred ChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015 39 YPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLKEN 79 (94)
Q Consensus 39 ~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 79 (94)
.-++|-+.+.++ ++|.++.|+..++.....+-.+||.....
T Consensus 177 ~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H 218 (506)
T KOG0117|consen 177 KKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESH 218 (506)
T ss_pred cHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecc
Confidence 346777777774 89999999998887777788899987543
No 241
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=25.25 E-value=79 Score=20.69 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCCCeEEcCc-eE--EEecCCeEEEEeecCCeEEeCcEEeCh
Q psy5015 2 DGYACGLKQD-QF--VLREDGYGQVVGRIKDMIIRGGENIYP 40 (94)
Q Consensus 2 ~~~~~~~TGD-~~--~~~~~G~~~~~GR~~d~i~~~G~~v~~ 40 (94)
+++|||...+ -| ++..+|.|.+ .....++...|.+|.+
T Consensus 98 ~G~GfF~v~~~~G~~~yTR~G~F~~-d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 98 EGQGFFQVQLPDGTIAYTRDGSFKL-DQDGQLVTSGGYPLQP 138 (261)
T ss_pred CCCcEEEEEcCCCCeEEeeCCCeeE-CCCCCEECCCCCEEee
Confidence 5788885532 12 4667787764 3445566678888775
No 242
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=24.91 E-value=83 Score=17.18 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=12.4
Q ss_pred EEEEEcCCCC---CCHHHHHHHHhc
Q psy5015 72 ISIKLKENAK---LNADDIRTFCKG 93 (94)
Q Consensus 72 ~~v~~~~~~~---~~~~~l~~~l~~ 93 (94)
.+|++.++.. .+.+++..+++.
T Consensus 11 ~yVvLEp~~~Eqflt~~Ell~~Lk~ 35 (83)
T PF12095_consen 11 HYVVLEPGQPEQFLTPEELLEKLKE 35 (83)
T ss_dssp -EEEEESSS-SEEE-HHHHHHHHHH
T ss_pred CEEEecCCCCcccCCHHHHHHHHHH
Confidence 5666666543 467777777653
No 243
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=24.79 E-value=2e+02 Score=18.52 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=27.4
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEE
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 57 (94)
+|++ -.++.++|++.+--.-+ .--.|.+++..|.+.|+|-+.-
T Consensus 158 ~R~~-~p~vTd~Gn~IiD~~~~-------~i~~p~~l~~~l~~i~GVve~G 200 (220)
T PRK00702 158 LRMD-EPVVTDNGNYILDVHFG-------RIPDPEALEKELNNIPGVVEHG 200 (220)
T ss_pred EeCC-CCEECCCCCEEEEecCC-------CcCCHHHHHHHhcCCCcEeeec
Confidence 4544 23446667655433322 1238999999999999998763
No 244
>PRK00556 minC septum formation inhibitor; Reviewed
Probab=24.54 E-value=2e+02 Score=18.38 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=12.8
Q ss_pred cCCeEEEEeecCCeEEeCcE
Q psy5015 17 EDGYGQVVGRIKDMIIRGGE 36 (94)
Q Consensus 17 ~~G~~~~~GR~~d~i~~~G~ 36 (94)
.+|.+++.|+..-.+..+|-
T Consensus 126 A~GnI~V~G~l~G~~~a~Gd 145 (194)
T PRK00556 126 SEGNVSVYGECEGAIECFGE 145 (194)
T ss_pred eCCCEEEEEEeccEEEECCC
Confidence 35677777777666665544
No 245
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=24.21 E-value=28 Score=23.20 Aligned_cols=8 Identities=0% Similarity=-0.276 Sum_probs=6.5
Q ss_pred CeEEcCce
Q psy5015 5 ACGLKQDQ 12 (94)
Q Consensus 5 ~~~~TGD~ 12 (94)
|||.||--
T Consensus 86 GWY~tg~~ 93 (280)
T cd08062 86 GWYSTGPK 93 (280)
T ss_pred EEecCCCC
Confidence 89999953
No 246
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=23.94 E-value=81 Score=20.69 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=19.9
Q ss_pred CCCCeEEcCce-E--EEecCCeEEEEeecCCeEEeCcEEeC
Q psy5015 2 DGYACGLKQDQ-F--VLREDGYGQVVGRIKDMIIRGGENIY 39 (94)
Q Consensus 2 ~~~~~~~TGD~-~--~~~~~G~~~~~GR~~d~i~~~G~~v~ 39 (94)
.++|||..-+- | ++..+|.|.+- ....++...|..|.
T Consensus 98 ~G~GFF~V~~~~G~~~YTR~G~F~~d-~~G~Lvt~~G~~vl 137 (256)
T PRK12818 98 QGRGFFTVERNAGNNYYTRDGHFHVD-TQGYLVNDSGYYVL 137 (256)
T ss_pred CCCceEEEEcCCCCeEEeeCCCeeEC-CCCCEEcCCCCEEe
Confidence 46788765432 2 35666766542 33344455565555
No 247
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=23.68 E-value=1.2e+02 Score=15.75 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=21.1
Q ss_pred cCceEEEecCCeEEEEeecCCeEEeCcEEeCh----HHHHHHHhcCCC
Q psy5015 9 KQDQFVLREDGYGQVVGRIKDMIIRGGENIYP----KEIEEFIQTHPN 52 (94)
Q Consensus 9 TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~----~~iE~~l~~~~~ 52 (94)
-.|++.++.+|.-+| .++. .+....| ..++.++.++|.
T Consensus 20 aPdvF~~~d~G~a~~---~~~~---~~~~~~~~e~~~~~~~A~~~CP~ 61 (68)
T COG1141 20 APDVFDYDDEGIAFV---LDGN---IGEGEVPEELEEDAEDAAEACPT 61 (68)
T ss_pred CCcceeeCCCcceEe---ccCc---cccccCChHHHHHHHHHHHhCCc
Confidence 357888888887766 2221 2233333 445566666663
No 248
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.44 E-value=1.2e+02 Score=17.89 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=17.2
Q ss_pred eEEeCcE-EeChHHHHHHHhcCCCeeeEEE
Q psy5015 30 MIIRGGE-NIYPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 30 ~i~~~G~-~v~~~~iE~~l~~~~~v~~~~v 58 (94)
-|+++|. +|.-.++.+++.+. +..++.-
T Consensus 10 GINVGG~nki~MaeLr~~l~~~-Gf~~V~T 38 (137)
T PF08002_consen 10 GINVGGKNKIKMAELREALEDL-GFTNVRT 38 (137)
T ss_dssp S-SBTTBS---HHHHHHHHHHC-T-EEEEE
T ss_pred ceecCCCCcccHHHHHHHHHHc-CCCCceE
Confidence 3778886 59999999999887 3444443
No 249
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=23.43 E-value=2.3e+02 Score=20.98 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=29.1
Q ss_pred EEEecCCeEEEEeecCCeEE--eCcEEeChHHHHHHHhcCCCeee
Q psy5015 13 FVLREDGYGQVVGRIKDMII--RGGENIYPKEIEEFIQTHPNVLE 55 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~i~--~~G~~v~~~~iE~~l~~~~~v~~ 55 (94)
.+.+++.+..+. |.++.+. -++.+.+.+|+.+.+.++|.--.
T Consensus 287 Fy~~~g~R~~L~-~~~~~F~~~~~~~~fs~~ELl~~l~~~PerFS 330 (542)
T PF10079_consen 287 FYLDDGERERLE-REGGQFVVRNGEIRFSEEELLEELESHPERFS 330 (542)
T ss_pred EEecCCeEEEEE-EeCCEEEECCCCeeeCHHHHHHHHHhChhhcc
Confidence 334433444444 7777764 56789999999999999987433
No 250
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=23.41 E-value=26 Score=20.37 Aligned_cols=6 Identities=17% Similarity=-0.109 Sum_probs=5.3
Q ss_pred eEEcCc
Q psy5015 6 CGLKQD 11 (94)
Q Consensus 6 ~~~TGD 11 (94)
|||-||
T Consensus 81 WYR~gd 86 (118)
T PF10856_consen 81 WYRQGD 86 (118)
T ss_pred ehhcCC
Confidence 889888
No 251
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.36 E-value=1.1e+02 Score=20.63 Aligned_cols=34 Identities=9% Similarity=0.315 Sum_probs=25.2
Q ss_pred ecCCeEEeCcEEeChHHH---HHHHhcCCCeeeEEEE
Q psy5015 26 RIKDMIIRGGENIYPKEI---EEFIQTHPNVLEAYAY 59 (94)
Q Consensus 26 R~~d~i~~~G~~v~~~~i---E~~l~~~~~v~~~~v~ 59 (94)
..+..+.++|+.|.|... +.++.+||.|...+.+
T Consensus 82 ~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~l 118 (269)
T PF05278_consen 82 ISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKL 118 (269)
T ss_pred cccceeeECCEEEcHhHHHHHHHHHHhCccHhhcccc
Confidence 445568899999999764 4678889998665443
No 252
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=23.20 E-value=1.3e+02 Score=18.43 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=26.9
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeC---c-------EEeChHHHHH
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRG---G-------ENIYPKEIEE 45 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~---G-------~~v~~~~iE~ 45 (94)
..|+.||-+.+..+..--++||...+.... | .-..|.|+..
T Consensus 28 ~~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~ 78 (159)
T cd04715 28 VEYRLYDDVYVHNGDSEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRM 78 (159)
T ss_pred EEEeCCCEEEEeCCCCCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhcc
Confidence 469999999997654555677766665532 3 2356777654
No 253
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=22.83 E-value=1e+02 Score=20.93 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=23.3
Q ss_pred eCcEEeChHHHHHHHhcCCCeeeEEEEEe
Q psy5015 33 RGGENIYPKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 33 ~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
++.......++|+.|.+.-+++++.|++.
T Consensus 63 I~~~~~~~~~Le~~L~~~fgLk~~iVvp~ 91 (318)
T PRK15418 63 INSRFEGCLELENALRQHFSLQHIRVLPA 91 (318)
T ss_pred EeCCCccHHHHHHHHHHHhCCCEEEEEeC
Confidence 44445677889999999999999988854
No 254
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=22.78 E-value=70 Score=19.88 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=24.3
Q ss_pred EEEEeecCCeEEeCcEEeChHH--HHHHHhc
Q psy5015 21 GQVVGRIKDMIIRGGENIYPKE--IEEFIQT 49 (94)
Q Consensus 21 ~~~~GR~~d~i~~~G~~v~~~~--iE~~l~~ 49 (94)
=++++|....++.-+-.+.|.+ ||..|.+
T Consensus 149 KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~ 179 (183)
T PRK10606 149 KFLVGRDGQVIQRFSPDMTPEDPIVMESIKL 179 (183)
T ss_pred EEEECCCCcEEEEECCCCCCCHHHHHHHHHH
Confidence 4689999999998889999988 8887754
No 255
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.74 E-value=66 Score=19.89 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=13.7
Q ss_pred eEEcCceEEEecCCeEEEEe
Q psy5015 6 CGLKQDQFVLREDGYGQVVG 25 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~G 25 (94)
=|..||++.+.-.|.+-.+|
T Consensus 106 ~~q~GDIVtw~l~~~~~HIg 125 (164)
T PF06940_consen 106 DWQPGDIVTWRLPGGLPHIG 125 (164)
T ss_pred hcCCCCEEEEeCCCCCCeEE
Confidence 47899999997666443333
No 256
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=22.63 E-value=3.3e+02 Score=20.27 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=32.6
Q ss_pred eChHHHHHHHhcCCCeeeEEEEEe-eCCC----CCceEEEEEEE--cCCCCCCHHHHH
Q psy5015 38 IYPKEIEEFIQTHPNVLEAYAYGV-PDER----MGEEVGISIKL--KENAKLNADDIR 88 (94)
Q Consensus 38 v~~~~iE~~l~~~~~v~~~~v~~~-~~~~----~~~~~~~~v~~--~~~~~~~~~~l~ 88 (94)
--=.|++..|.++++|..|.|... |... ....+.|-|++ +++..++.+++.
T Consensus 135 ALegELartI~~l~~V~~ArVhLalPe~s~F~~~~~~~tASV~l~l~~g~~L~~~QV~ 192 (555)
T TIGR00206 135 AIEGELSRTIEALDPVKAASVHLAMPKDALFVEEQEPPSASVRLTLRPGSDLDTNQIE 192 (555)
T ss_pred HHHHHHHHHHHhcCCeeeEEEEEECCCCCccccCCCCCCEEEEEecCCCCCCCHHHHH
Confidence 334788999999999999888554 3221 12334455554 666777776643
No 257
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.59 E-value=1.2e+02 Score=16.89 Aligned_cols=19 Identities=21% Similarity=-0.123 Sum_probs=10.5
Q ss_pred CeEEcCceEEE-----ecCCeEEE
Q psy5015 5 ACGLKQDQFVL-----REDGYGQV 23 (94)
Q Consensus 5 ~~~~TGD~~~~-----~~~G~~~~ 23 (94)
.|.+||-.+++ +++|.+|+
T Consensus 16 rYvnTgTvgrV~dIkkdEdG~~WV 39 (97)
T COG4014 16 RYVNTGTVGRVVDIKKDEDGDIWV 39 (97)
T ss_pred EEeecCceeeEEEEEeecCCceEE
Confidence 35566666554 45666444
No 258
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=22.38 E-value=1.1e+02 Score=20.04 Aligned_cols=36 Identities=6% Similarity=0.030 Sum_probs=18.2
Q ss_pred CCCCeEEcCc-eE--EEecCCeEEEEeecCCeEEeCcEEeC
Q psy5015 2 DGYACGLKQD-QF--VLREDGYGQVVGRIKDMIIRGGENIY 39 (94)
Q Consensus 2 ~~~~~~~TGD-~~--~~~~~G~~~~~GR~~d~i~~~G~~v~ 39 (94)
+++|||..-+ -+ ++..+|.|.+- -...++ ..|+.|-
T Consensus 81 ~G~GFF~V~~~~G~~~YTR~G~F~~d-~~G~L~-~~G~~Vl 119 (252)
T PRK12641 81 KDNGWLTIKDTNGQEAYTKNGHLKIN-SKRKLT-VQNNEVI 119 (252)
T ss_pred cCCcEEEEEcCCCCeEEeeCCCeeEC-CCCCEE-eCCcEec
Confidence 5678876532 12 35566666543 112222 4565554
No 259
>COG3330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.38 E-value=1e+02 Score=19.85 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=16.6
Q ss_pred ceEEEecCCeEEEEeecCC
Q psy5015 11 DQFVLREDGYGQVVGRIKD 29 (94)
Q Consensus 11 D~~~~~~~G~~~~~GR~~d 29 (94)
|+|+++++|.+.-+-|+..
T Consensus 129 diGyl~~dG~fl~laRS~~ 147 (215)
T COG3330 129 DIGYLTPDGRFLTLARSNP 147 (215)
T ss_pred EeeeEcCCCcEEEEEeccc
Confidence 7999999999998888764
No 260
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=22.32 E-value=24 Score=18.69 Aligned_cols=26 Identities=15% Similarity=-0.033 Sum_probs=2.3
Q ss_pred EecCCeEEEEeecCCeEEeCcEEeCh
Q psy5015 15 LREDGYGQVVGRIKDMIIRGGENIYP 40 (94)
Q Consensus 15 ~~~~G~~~~~GR~~d~i~~~G~~v~~ 40 (94)
+++||.+.+.=...-.++.+|.+.++
T Consensus 42 v~~~G~~~~~~~~~~~~n~RG~~ySl 67 (73)
T PF08772_consen 42 VDEDGKIKLHLKKNFQWNLRGTKYSL 67 (73)
T ss_dssp --SS---B------------------
T ss_pred ECCCCCEEEEecCCceeccCCCCccC
Confidence 46788776665555677788877664
No 261
>PRK00106 hypothetical protein; Provisional
Probab=22.26 E-value=41 Score=24.77 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.6
Q ss_pred hHHHHHHHhcCCCeeeEEEEEe
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGV 61 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~ 61 (94)
+.++|.+..++|+|..|+++-.
T Consensus 460 l~~lE~ia~~~~gV~~~yaiqa 481 (535)
T PRK00106 460 LRDLEEIANSFDGVQNSFALQA 481 (535)
T ss_pred HHHHHHHHhcCCcHHHHHHHhc
Confidence 5689999999999999888744
No 262
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.24 E-value=1.2e+02 Score=19.71 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=22.3
Q ss_pred ceEEEecCCeEEEEeec-------CCeEEeCcEEeChHHHH
Q psy5015 11 DQFVLREDGYGQVVGRI-------KDMIIRGGENIYPKEIE 44 (94)
Q Consensus 11 D~~~~~~~G~~~~~GR~-------~d~i~~~G~~v~~~~iE 44 (94)
-+..+.++|.|.|.|++ ++.|.+.|. |-|.+|.
T Consensus 145 ~V~~VlpNGnL~I~GeK~i~vN~e~e~IrlsGv-VRP~DI~ 184 (226)
T PRK12697 145 TVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGV-VNPNTIS 184 (226)
T ss_pred EEEEECCCCCEEEEEEEEEEECCCEEEEEEEEE-ECHHHCC
Confidence 34556789999999986 344445543 6777765
No 263
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6. CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav
Probab=22.05 E-value=37 Score=22.62 Aligned_cols=8 Identities=0% Similarity=-0.346 Sum_probs=7.2
Q ss_pred CeEEcCce
Q psy5015 5 ACGLKQDQ 12 (94)
Q Consensus 5 ~~~~TGD~ 12 (94)
|||.||..
T Consensus 87 GWY~tg~~ 94 (288)
T cd08063 87 GWYTTGPG 94 (288)
T ss_pred EEEecCCC
Confidence 89999987
No 264
>PLN03246 26S proteasome regulatory subunit; Provisional
Probab=21.77 E-value=37 Score=23.02 Aligned_cols=9 Identities=0% Similarity=-0.171 Sum_probs=7.1
Q ss_pred CeEEcCceE
Q psy5015 5 ACGLKQDQF 13 (94)
Q Consensus 5 ~~~~TGD~~ 13 (94)
|||.||--.
T Consensus 91 GWY~tg~~i 99 (303)
T PLN03246 91 GWYSTGPKL 99 (303)
T ss_pred eeecCCCCC
Confidence 899999543
No 265
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=21.63 E-value=2.8e+02 Score=22.40 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC----CCCCHHHHHHHHhc
Q psy5015 41 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN----AKLNADDIRTFCKG 93 (94)
Q Consensus 41 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~~~l~~ 93 (94)
..|...|.+.|+|.++.++|..+. ...|.+++. ..++..++.+.+++
T Consensus 158 ~~l~~~L~~v~GV~~V~~~G~~~~------~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 158 SNVRDELSRVPGVGSVQLFGAQEY------AMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred HHHHHHHhcCCCceEEEEcCCCce------eEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 457788888999999998876543 466776653 35677888887765
No 266
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=21.62 E-value=1.6e+02 Score=16.23 Aligned_cols=15 Identities=7% Similarity=0.392 Sum_probs=13.2
Q ss_pred EEeChHHHHHHHhcC
Q psy5015 36 ENIYPKEIEEFIQTH 50 (94)
Q Consensus 36 ~~v~~~~iE~~l~~~ 50 (94)
.+|.|+.+++++.+|
T Consensus 63 ~~V~~edv~~Iv~~~ 77 (92)
T cd03063 63 GPVTPADVASLLDAG 77 (92)
T ss_pred EeCCHHHHHHHHHHH
Confidence 679999999999876
No 267
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=21.52 E-value=1.7e+02 Score=19.27 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=21.7
Q ss_pred EEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 36 ENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 36 ~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
..+++..+++.|.+.|.|+.+.|--
T Consensus 91 ~~ld~~~~~~~i~~~PwVk~a~V~r 115 (269)
T COG1589 91 LTLDLNAIRENIEKLPWVKSAEVRR 115 (269)
T ss_pred EEEcHHHHHHHHHhCCCeEEEEEEE
Confidence 4688999999999999999987754
No 268
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=21.43 E-value=1.3e+02 Score=21.37 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=18.7
Q ss_pred EEcCceEEEecC-CeEEEEeecCCe
Q psy5015 7 GLKQDQFVLRED-GYGQVVGRIKDM 30 (94)
Q Consensus 7 ~~TGD~~~~~~~-G~~~~~GR~~d~ 30 (94)
...||..+++.+ |.+..+||.+..
T Consensus 171 V~~GDVI~Id~~tG~V~k~Grs~~~ 195 (398)
T PF06068_consen 171 VRVGDVIYIDKNTGRVKKVGRSDSY 195 (398)
T ss_dssp --TTCEEEEETTTTEEEEEEEECCC
T ss_pred CccCcEEEEECCCCeEEEEecccch
Confidence 467999999865 899999998654
No 269
>KOG2394|consensus
Probab=21.11 E-value=1.2e+02 Score=22.66 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.7
Q ss_pred EEEecCCeEEEEeecCCeEEe
Q psy5015 13 FVLREDGYGQVVGRIKDMIIR 33 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~i~~ 33 (94)
+.|.+||.+.+.|=.||.+.+
T Consensus 338 vcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred EEEcCCccEEEecCCcceEEE
Confidence 457889999999999998863
No 270
>KOG2863|consensus
Probab=20.97 E-value=1.2e+02 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.0
Q ss_pred eEEEEeecCCeEEeCcEEeC
Q psy5015 20 YGQVVGRIKDMIIRGGENIY 39 (94)
Q Consensus 20 ~~~~~GR~~d~i~~~G~~v~ 39 (94)
.+|++|++ .+|+++|.||.
T Consensus 103 NIyYlG~a-gVv~~~gvRIg 121 (456)
T KOG2863|consen 103 NIYYLGYA-GVVNFGGVRIG 121 (456)
T ss_pred ceEEeeec-ceEEECCEEEe
Confidence 47889985 58899998874
No 271
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=20.97 E-value=1.2e+02 Score=14.78 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=24.2
Q ss_pred eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeE
Q psy5015 6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 56 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 56 (94)
|+.-.++-..-.+|.+++.|+.++. -....++.++...+++...
T Consensus 13 ~~~~~~i~v~v~~g~v~L~G~v~s~-------~~~~~a~~~a~~v~gv~~V 56 (64)
T PF04972_consen 13 WLPDSNISVSVENGVVTLSGEVPSQ-------EQRDAAERLARSVAGVREV 56 (64)
T ss_dssp CTT-TTEEEEEECTEEEEEEEESSC-------HHHHHHHHHHHCC-STSEE
T ss_pred ccCCCeEEEEEECCEEEEEeeCcHH-------HHHHhHHhhhccCCCcCEE
Confidence 3333344444557778888876531 2344556666777777653
No 272
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.92 E-value=1.3e+02 Score=22.04 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=24.0
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEE
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 76 (94)
.+..+|++...+++|..|+++-. |..+-++|.+
T Consensus 438 rl~~le~i~~~~~gv~~~~aiqa-----Greirv~v~~ 470 (514)
T TIGR03319 438 RLEKLEEIANSFEGVEKSYAIQA-----GREIRVMVKP 470 (514)
T ss_pred HHHHHHHHHHhCCCchhhhhhhc-----CcEEEEEecC
Confidence 46789999999999999998733 3345555543
No 273
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=20.79 E-value=2e+02 Score=17.69 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=24.8
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChH
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 41 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~ 41 (94)
+..|+.+-++.+|....+-|...+|.+.+.++...
T Consensus 75 L~~GEvalY~~~G~~I~L~~~G~ii~~~~~~~~v~ 109 (162)
T PF06890_consen 75 LKPGEVALYDDEGQKIHLKRDGRIIEVTCKTVTVN 109 (162)
T ss_pred CCCCcEEEEcCCCCEEEEEecceEEeccCceEEEe
Confidence 45678888888888776666566666777665554
No 274
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=20.77 E-value=1.3e+02 Score=16.46 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=16.4
Q ss_pred eEEcCceEEEecCC----eEEEEeecCCeE
Q psy5015 6 CGLKQDQFVLREDG----YGQVVGRIKDMI 31 (94)
Q Consensus 6 ~~~TGD~~~~~~~G----~~~~~GR~~d~i 31 (94)
-|+.||.+.+..+. .-..+||...+.
T Consensus 3 ~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~ 32 (123)
T cd04370 3 TYEVGDSVYVEPDDSIKSDPPYIARIEELW 32 (123)
T ss_pred EEecCCEEEEecCCcCCCCCCEEEEEeeee
Confidence 47889999886544 334556655443
No 275
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.73 E-value=1.8e+02 Score=16.48 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=16.7
Q ss_pred CCeEEeCcEEeChHHHHHHHhcC
Q psy5015 28 KDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 28 ~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
+..+.++|..++..++.+.+.++
T Consensus 57 ~g~~~~~~~~v~~~~L~~~l~~~ 79 (122)
T TIGR02803 57 DLSLFVGNDPVARETLGTALDAL 79 (122)
T ss_pred CCCEEECCccCCHHHHHHHHHHH
Confidence 33455578889999988888664
No 276
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=20.70 E-value=1e+02 Score=16.57 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=10.6
Q ss_pred EecCCeEEEEeecC
Q psy5015 15 LREDGYGQVVGRIK 28 (94)
Q Consensus 15 ~~~~G~~~~~GR~~ 28 (94)
+..+|...+.||..
T Consensus 3 ~s~~g~~i~vGrn~ 16 (90)
T PF05670_consen 3 ISSDGFKIIVGRNA 16 (90)
T ss_pred EecCCeEEEEeCCH
Confidence 34678899999954
No 277
>PF07194 P2: P2 response regulator binding domain; InterPro: IPR010808 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The response regulators for CheA bind to the P2 domain, which is found between IPR008207 from INTERPRO and IPR004105 from INTERPRO as either one or two copies. Highly flexible linkers connect P2 to the rest of CheA and impart remarkable mobility to the P2 domain. This feature is thought to enhance the inter CheA dimer phosphotransfer reactions within the signalling complex, thereby amplifying the phosphorylation signal [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0006928 cellular component movement; PDB: 1U0S_A.
Probab=20.59 E-value=1.5e+02 Score=15.63 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=17.5
Q ss_pred eChHHHHHHHhcCCCeeeEEEEE
Q psy5015 38 IYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 38 v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
.++.+|++.+.+.+.|..+-+..
T Consensus 60 ~~~e~i~~~l~~~~~V~~v~V~e 82 (84)
T PF07194_consen 60 EDEEEIEEVLASISEVESVEVEE 82 (84)
T ss_dssp S-HHHHHHHHHTSSS-SEEEEEE
T ss_pred CCHHHHHHHHhCCCcEEEEEEEE
Confidence 46899999999999998876653
No 278
>PF11519 DUF3222: Protein of unknown function (DUF3222); InterPro: IPR021599 This family of proteins with unknown function appears to be restricted to Rhodopseudomonas. ; PDB: 2JS3_B.
Probab=20.48 E-value=20 Score=18.56 Aligned_cols=11 Identities=9% Similarity=-0.139 Sum_probs=3.9
Q ss_pred eEEcCceEEEe
Q psy5015 6 CGLKQDQFVLR 16 (94)
Q Consensus 6 ~~~TGD~~~~~ 16 (94)
|+.|||-..-.
T Consensus 44 wl~tgdei~h~ 54 (74)
T PF11519_consen 44 WLQTGDEIKHA 54 (74)
T ss_dssp TTS--SS----
T ss_pred hhhcCcccccC
Confidence 88888865433
No 279
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=20.48 E-value=1.5e+02 Score=19.83 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=25.3
Q ss_pred CCCCeE--EcCce-EEEecCCeEEEEeecCCeEEeCcEEeCh
Q psy5015 2 DGYACG--LKQDQ-FVLREDGYGQVVGRIKDMIIRGGENIYP 40 (94)
Q Consensus 2 ~~~~~~--~TGD~-~~~~~~G~~~~~GR~~d~i~~~G~~v~~ 40 (94)
.++||| .|.|= -.+..+|.|++ .-...++...|++|-|
T Consensus 98 ~g~gfF~I~~~dG~~~YTR~G~F~~-d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 98 TGDGFFQIQTPDGTIAYTRDGSFTV-DEEGQLVTSNGYPVLD 138 (265)
T ss_pred cCCceEEEEcCCCCEEEeeCCceeE-CCCCCEEeCCCCCccC
Confidence 467775 45665 66677777765 3445566678888877
No 280
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=20.42 E-value=88 Score=15.44 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=21.6
Q ss_pred eEEeCcEEeChHHHHHHHhcC---CCeeeEEEEEeeC
Q psy5015 30 MIIRGGENIYPKEIEEFIQTH---PNVLEAYAYGVPD 63 (94)
Q Consensus 30 ~i~~~G~~v~~~~iE~~l~~~---~~v~~~~v~~~~~ 63 (94)
.|.+.|..-+|.++++.|.+- .+-.--.++....
T Consensus 7 ~Isvs~~~~s~~d~~~~la~kAd~~GA~~y~I~~~~~ 43 (56)
T PF07338_consen 7 TISVSGNFGSPDDAEEALAKKADEKGAKYYRITSASE 43 (56)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHTT-SEEEEEEEEE
T ss_pred EEEEccccCCHHHHHHHHHHHHHHcCCCEEEEEEEEc
Confidence 466777778999999999763 3333444444433
No 281
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=20.35 E-value=2.1e+02 Score=18.45 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.6
Q ss_pred eChHHHHHHHhcCCCeeeEEEE
Q psy5015 38 IYPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 38 v~~~~iE~~l~~~~~v~~~~v~ 59 (94)
-.|.+++..|.+.|+|-+.-.+
T Consensus 181 ~d~~~l~~~l~~i~GVve~GlF 202 (218)
T TIGR00021 181 PDPEALEEELKSIPGVVETGLF 202 (218)
T ss_pred CCHHHHHHHHhcCCCEEEeeee
Confidence 4899999999999999887554
No 282
>PF05771 Pox_A31: Poxvirus A31 protein; InterPro: IPR008786 This family contains the vaccinia virus A31R protein, the function of which is not known.
Probab=20.29 E-value=73 Score=18.41 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=19.1
Q ss_pred ecCCeEEEEeecCCeEEeCcEEeC
Q psy5015 16 REDGYGQVVGRIKDMIIRGGENIY 39 (94)
Q Consensus 16 ~~~G~~~~~GR~~d~i~~~G~~v~ 39 (94)
..+|..+.+||.=+-+.+++.++.
T Consensus 86 s~~G~~y~LG~sI~~Lsl~~~k~~ 109 (114)
T PF05771_consen 86 SENGSTYYLGRSIDRLSLRERKIW 109 (114)
T ss_pred ccCCceehhhchhhheeccceEEe
Confidence 568999999998888888777653
No 283
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=20.18 E-value=57 Score=17.28 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=11.0
Q ss_pred EEecCCeEEEEeecCC
Q psy5015 14 VLREDGYGQVVGRIKD 29 (94)
Q Consensus 14 ~~~~~G~~~~~GR~~d 29 (94)
.+|++|.+|+.--.++
T Consensus 42 wiDe~G~vYi~~s~ee 57 (76)
T PF06970_consen 42 WIDENGNVYIIFSIEE 57 (76)
T ss_pred cCCCCCCEEEEeeHHH
Confidence 4688998887654433
No 284
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=20.15 E-value=1.5e+02 Score=16.08 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.1
Q ss_pred hHHHHHHHhcCCCeeeEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~ 59 (94)
..++.+.+.++|.|..|..+
T Consensus 77 ~~~v~~~l~~~p~v~~~~~~ 96 (108)
T smart00344 77 LEEFLEKLEKLPEVVEVYLV 96 (108)
T ss_pred HHHHHHHHhCCcceEEeeEe
Confidence 46777788889999998865
Done!