Query psy5015
Match_columns 94
No_of_seqs 245 out of 1355
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 23:39:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 99.9 2.9E-27 9.9E-32 162.9 13.1 94 1-94 407-500 (536)
2 4fuq_A Malonyl COA synthetase; 99.9 4.6E-27 1.6E-31 161.0 12.2 94 1-94 372-465 (503)
3 1t5h_X 4-chlorobenzoyl COA lig 99.9 1.3E-26 4.4E-31 158.6 13.3 90 4-93 378-467 (504)
4 2d1s_A Luciferase, luciferin 4 99.9 9.3E-27 3.2E-31 160.9 10.8 93 2-94 415-507 (548)
5 1mdb_A 2,3-dihydroxybenzoate-A 99.9 2E-26 7E-31 158.8 11.6 93 1-94 403-495 (539)
6 3nyq_A Malonyl-COA ligase; A/B 99.9 6.3E-26 2.1E-30 155.5 12.0 93 1-93 378-472 (505)
7 3g7s_A Long-chain-fatty-acid-- 99.9 2.8E-26 9.5E-31 158.3 9.2 92 3-94 412-507 (549)
8 1pg4_A Acetyl-COA synthetase; 99.9 9.2E-26 3.1E-30 158.7 11.8 91 3-93 492-585 (652)
9 3etc_A AMP-binding protein; ad 99.9 1.2E-25 4.3E-30 156.3 12.1 90 4-93 451-543 (580)
10 3r44_A Fatty acyl COA syntheta 99.9 9.1E-26 3.1E-30 155.0 11.1 89 4-93 389-477 (517)
11 1amu_A GRSA, gramicidin synthe 99.9 2.1E-25 7.3E-30 154.6 11.9 89 3-93 405-493 (563)
12 3rix_A Luciferase, luciferin 4 99.9 4.8E-27 1.6E-31 162.2 2.4 93 1-93 412-504 (550)
13 1v25_A Long-chain-fatty-acid-C 99.9 4.7E-26 1.6E-30 157.1 6.1 91 2-93 409-499 (541)
14 3rg2_A Enterobactin synthase c 99.9 1.1E-24 3.7E-29 152.2 12.4 91 1-93 407-497 (617)
15 3ipl_A 2-succinylbenzoate--COA 99.9 7.8E-25 2.7E-29 149.5 11.1 88 4-93 374-461 (501)
16 4gr5_A Non-ribosomal peptide s 99.9 2.5E-26 8.7E-31 159.2 2.9 92 3-94 444-536 (570)
17 3fce_A D-alanine--poly(phospho 99.9 1.4E-24 4.8E-29 148.6 11.2 91 2-93 374-468 (512)
18 3o83_A Peptide arylation enzym 99.9 5.4E-26 1.9E-30 156.8 3.2 92 1-93 412-503 (544)
19 1ry2_A Acetyl-coenzyme A synth 99.9 6.7E-25 2.3E-29 154.7 7.8 90 4-93 502-601 (663)
20 3c5e_A Acyl-coenzyme A synthet 99.9 1.4E-24 4.7E-29 150.8 8.7 90 4-93 432-526 (570)
21 3tsy_A Fusion protein 4-coumar 99.9 1.2E-25 4E-30 163.4 3.5 94 1-94 454-547 (979)
22 3e7w_A D-alanine--poly(phospho 99.9 1E-23 3.6E-28 144.4 12.2 88 5-93 376-467 (511)
23 3l8c_A D-alanine--poly(phospho 99.9 1.3E-24 4.6E-29 148.9 7.8 92 2-93 377-476 (521)
24 3ivr_A Putative long-chain-fat 99.9 1.8E-25 6E-30 153.0 2.7 91 4-94 374-466 (509)
25 2vsq_A Surfactin synthetase su 99.9 1.9E-23 6.6E-28 155.3 11.0 89 3-93 836-924 (1304)
26 2v7b_A Benzoate-coenzyme A lig 99.9 3E-23 1E-27 142.5 10.0 90 4-94 405-497 (529)
27 4gs5_A Acyl-COA synthetase (AM 99.9 6.7E-24 2.3E-28 140.6 5.8 90 2-93 225-318 (358)
28 3qov_A Phenylacetate-coenzyme 99.9 8.8E-23 3E-27 137.5 8.5 90 3-93 297-399 (436)
29 3ite_A SIDN siderophore synthe 99.9 5.8E-24 2E-28 146.9 2.7 91 3-93 402-506 (562)
30 2y4o_A Phenylacetate-coenzyme 99.9 1.2E-22 4.1E-27 137.1 6.0 90 4-93 305-405 (443)
31 2y27_A Phenylacetate-coenzyme 99.9 7.9E-23 2.7E-27 137.8 4.4 90 4-93 303-401 (437)
32 3kxw_A Saframycin MX1 syntheta 99.9 6.4E-23 2.2E-27 142.1 3.2 87 5-93 436-527 (590)
33 4dg8_A PA1221; ANL superfamily 99.9 1.5E-21 5.3E-26 136.8 9.1 84 5-91 396-479 (620)
34 3gqw_A Fatty acid AMP ligase; 99.9 9.6E-22 3.3E-26 135.6 6.9 87 3-92 437-523 (576)
35 3lax_A Phenylacetate-coenzyme 99.7 7.1E-17 2.4E-21 91.2 9.0 60 25-84 1-60 (109)
36 3gxs_A Phenylacetate-coenzyme 99.7 2.7E-16 9.4E-21 88.9 7.6 55 25-80 1-55 (109)
37 4b2g_A GH3-1 auxin conjugating 98.4 1.6E-06 5.5E-11 61.2 7.5 43 7-49 412-458 (609)
38 4eql_A 4-substituted benzoates 98.3 1.4E-06 4.8E-11 61.3 6.1 44 7-50 400-447 (581)
39 4epl_A Jasmonic acid-amido syn 98.2 2E-05 6.7E-10 55.5 9.7 81 7-90 407-499 (581)
40 2cvi_A 75AA long hypothetical 83.5 3.1 0.00011 21.2 6.1 43 40-92 15-57 (83)
41 2djw_A Probable transcriptiona 83.4 2.6 9E-05 21.9 4.3 21 40-60 15-35 (92)
42 2zbc_A 83AA long hypothetical 77.6 5.2 0.00018 20.1 5.6 43 40-92 15-57 (83)
43 3hgu_A EHPF; phenazine, antibi 77.0 1.5 5.2E-05 28.4 2.4 31 6-36 329-368 (369)
44 3hhe_A Ribose-5-phosphate isom 65.3 12 0.00042 23.7 4.5 48 5-59 183-231 (255)
45 3dxs_X Copper-transporting ATP 64.8 10 0.00035 18.1 5.4 45 40-92 17-61 (74)
46 4a4j_A Pacszia, cation-transpo 62.1 11 0.00038 17.6 5.1 45 40-93 17-61 (69)
47 1smp_I Erwinia chrysanthemi in 61.2 11 0.00039 20.5 3.3 29 3-31 55-85 (101)
48 1i96_V Translation initiation 59.7 18 0.0006 19.2 4.1 59 6-77 26-85 (89)
49 2kke_A Uncharacterized protein 59.5 10 0.00036 17.3 2.5 17 36-52 18-34 (53)
50 2zzt_A Putative uncharacterize 59.3 19 0.00064 19.3 6.8 40 40-79 12-51 (107)
51 2cg4_A Regulatory protein ASNC 58.2 23 0.00077 19.9 6.3 42 40-91 82-123 (152)
52 1jiw_I Proteinase inhibitor; p 54.1 14 0.00047 20.3 2.9 27 3-29 58-86 (106)
53 1yj7_A ESCJ; mixed alpha/beta, 52.3 29 0.00099 20.5 4.3 46 40-85 92-139 (171)
54 4ap8_A Molybdopterin synthase 51.2 24 0.00081 20.2 3.7 27 26-53 5-31 (135)
55 3byp_A CZRB protein; membrane 51.0 24 0.00082 18.1 4.2 41 39-79 11-53 (94)
56 3i4p_A Transcriptional regulat 50.8 33 0.0011 19.6 5.4 20 40-59 79-98 (162)
57 1m0s_A Ribose-5-phosphate isom 49.6 24 0.00081 21.8 3.8 44 7-60 157-200 (219)
58 2b3g_B Cellular tumor antigen 49.0 12 0.0004 15.0 1.5 15 37-51 12-26 (28)
59 1o8b_A Ribose 5-phosphate isom 47.7 31 0.001 21.3 4.1 44 7-60 156-199 (219)
60 2pfu_A Biopolymer transport EX 45.7 26 0.00087 18.1 3.1 21 30-50 31-51 (99)
61 3h90_A Ferrous-iron efflux pum 45.2 42 0.0014 21.1 4.5 41 39-79 207-247 (283)
62 2f8m_A Ribose 5-phosphate isom 45.0 35 0.0012 21.4 4.1 48 7-60 173-221 (244)
63 3u5r_E Uncharacterized protein 44.8 17 0.00058 21.7 2.6 40 11-50 146-185 (218)
64 3bpd_A Uncharacterized protein 43.9 38 0.0013 18.3 4.0 25 31-55 53-77 (100)
65 3kwm_A Ribose-5-phosphate isom 40.9 40 0.0014 20.9 3.8 40 14-60 166-205 (224)
66 2cqa_A RUVB-like 2; TIP48, TIP 40.5 33 0.0011 18.4 3.0 21 8-28 64-85 (95)
67 2vh1_A FTSQ, cell division pro 39.5 25 0.00085 21.1 2.7 24 37-60 33-57 (220)
68 2hz5_A Dynein light chain 2A, 39.1 10 0.00036 20.7 0.9 21 39-59 10-33 (106)
69 2xmw_A PACS-N, cation-transpor 37.2 32 0.0011 15.6 4.7 27 32-58 8-36 (71)
70 2cfx_A HTH-type transcriptiona 36.9 55 0.0019 18.1 6.7 21 40-60 78-98 (144)
71 2ra9_A Uncharacterized protein 36.8 11 0.00037 22.1 0.7 32 8-50 20-53 (150)
72 2p5v_A Transcriptional regulat 36.7 58 0.002 18.4 6.1 42 40-91 85-126 (162)
73 2jwk_A Protein TOLR; periplasm 36.6 39 0.0013 16.3 4.6 30 13-50 7-39 (74)
74 2l69_A Rossmann 2X3 fold prote 36.6 6.6 0.00022 21.3 -0.2 23 28-50 19-45 (134)
75 1kwa_A Hcask/LIN-2 protein; PD 36.4 43 0.0015 16.8 4.7 25 28-52 48-75 (88)
76 1uwd_A Hypothetical protein TM 35.8 50 0.0017 17.4 3.8 26 40-65 62-87 (103)
77 3cq1_A Putative uncharacterize 35.4 51 0.0018 17.4 3.8 27 40-66 61-87 (103)
78 2g9o_A Copper-transporting ATP 35.2 45 0.0015 16.6 4.4 27 32-58 8-36 (90)
79 3my2_A Lipopolysaccharide expo 35.1 47 0.0016 19.4 3.4 22 5-26 77-98 (175)
80 2e1c_A Putative HTH-type trans 34.9 67 0.0023 18.6 5.7 20 40-59 100-119 (171)
81 2roe_A Heavy metal binding pro 34.9 34 0.0012 15.5 2.4 43 40-93 15-57 (66)
82 3uji_P Envelope glycoprotein G 34.7 14 0.00049 13.9 0.8 8 5-12 14-21 (23)
83 2z17_A Pleckstrin homology SEC 34.6 44 0.0015 17.3 3.0 25 28-52 70-97 (104)
84 2kt2_A Mercuric reductase; nme 34.3 37 0.0013 15.4 4.9 44 40-92 15-58 (69)
85 3mly_P HIV-1 GP120 third varia 34.2 15 0.00051 13.8 0.8 8 5-12 14-21 (23)
86 1uj6_A Ribose 5-phosphate isom 33.9 68 0.0023 19.8 4.1 40 14-60 169-208 (227)
87 2cyy_A Putative HTH-type trans 33.5 64 0.0022 17.9 5.7 21 39-59 79-99 (151)
88 3bk3_C Crossveinless 2, bone m 33.3 7.8 0.00027 19.4 -0.2 17 6-22 1-17 (67)
89 3e17_A Tight junction protein 32.9 51 0.0017 16.6 3.6 25 28-52 44-71 (88)
90 2vh2_A FTSQ, cell division pro 32.8 24 0.00082 21.9 1.9 24 37-60 60-83 (255)
91 1zx8_A Hypothetical protein TM 32.8 28 0.00097 19.9 2.1 18 7-24 73-90 (136)
92 1y7n_A Amyloid beta A4 precurs 32.6 53 0.0018 16.7 3.9 23 28-50 53-78 (90)
93 2dbb_A Putative HTH-type trans 32.5 67 0.0023 17.8 6.0 20 41-60 83-102 (151)
94 1cc8_A Protein (metallochapero 32.0 45 0.0015 15.7 2.9 43 40-93 19-62 (73)
95 3l7o_A Ribose-5-phosphate isom 31.7 87 0.003 19.4 4.3 43 11-60 162-204 (225)
96 2ejy_A 55 kDa erythrocyte memb 31.7 50 0.0017 17.2 2.9 23 28-50 59-84 (97)
97 3a69_A Flagellar HOOK protein 31.6 55 0.0019 22.1 3.6 38 1-39 76-116 (402)
98 1yg0_A COP associated protein; 31.5 40 0.0014 14.9 5.1 44 40-92 16-59 (66)
99 4e0q_A COP9 signalosome comple 31.3 10 0.00036 21.6 0.1 7 5-11 90-96 (141)
100 3dqg_A Heat shock 70 kDa prote 31.0 57 0.0019 18.7 3.2 38 13-50 87-130 (151)
101 4b4t_U RPN8, 26S proteasome re 30.4 13 0.00046 24.4 0.5 7 5-11 91-97 (338)
102 1mwy_A ZNTA; open-faced beta-s 28.8 50 0.0017 15.2 2.9 27 32-58 8-36 (73)
103 3fry_A Probable copper-exporti 28.6 49 0.0017 15.6 2.4 19 39-58 19-37 (73)
104 3o46_A Maguk P55 subfamily mem 28.1 64 0.0022 16.2 4.0 25 28-52 51-78 (93)
105 2krx_A ASL3597 protein; struct 28.1 49 0.0017 17.7 2.4 22 72-93 11-35 (94)
106 3pur_A Lysine-specific demethy 27.6 1.2E+02 0.0041 21.5 4.8 41 7-48 370-410 (528)
107 1p6t_A Potential copper-transp 27.0 81 0.0028 17.0 4.2 45 40-92 89-133 (151)
108 2aj0_A Probable cadmium-transp 26.9 54 0.0019 15.0 2.7 27 32-58 8-36 (71)
109 1xtz_A Ribose-5-phosphate isom 26.2 1.1E+02 0.0037 19.4 4.1 40 14-60 199-238 (264)
110 2yt7_A Amyloid beta A4 precurs 25.9 75 0.0026 16.3 3.9 23 28-50 60-85 (101)
111 2jxo_A Ezrin-radixin-moesin-bi 25.8 73 0.0025 16.1 3.1 27 26-52 52-82 (98)
112 2pn6_A ST1022, 150AA long hypo 25.7 91 0.0031 17.2 5.2 21 39-59 77-97 (150)
113 3iwl_A Copper transport protei 25.4 43 0.0015 15.6 1.8 42 40-93 16-57 (68)
114 3mlz_P HIV-1 GP120 third varia 25.4 19 0.00064 13.8 0.3 8 5-12 15-22 (25)
115 2xmm_A SSR2857 protein, ATX1; 25.2 42 0.0014 14.7 1.7 19 40-58 16-34 (64)
116 2e7k_A Maguk P55 subfamily mem 25.1 75 0.0026 16.0 4.4 24 28-51 52-77 (91)
117 2raq_A Conserved protein MTH88 25.1 88 0.003 16.8 6.5 55 36-93 17-71 (97)
118 1fvq_A Copper-transporting ATP 25.0 58 0.002 14.7 3.4 53 31-92 6-60 (72)
119 1i1g_A Transcriptional regulat 24.9 91 0.0031 16.9 4.2 43 39-91 76-118 (141)
120 2ia0_A Putative HTH-type trans 24.8 1.1E+02 0.0036 17.6 4.7 19 39-57 96-114 (171)
121 2i04_A Membrane-associated gua 24.7 71 0.0024 15.6 3.2 24 28-51 48-74 (85)
122 2l3m_A Copper-ION-binding prot 24.6 59 0.002 14.6 4.9 54 31-92 9-64 (71)
123 1yjr_A Copper-transporting ATP 24.5 61 0.0021 14.8 2.7 27 32-58 9-37 (75)
124 3gge_A PDZ domain-containing p 24.3 88 0.003 16.5 4.7 28 28-55 51-81 (95)
125 1ed7_A Chitinase A1, (CHBD-CHI 24.3 59 0.002 14.5 2.2 18 3-22 4-21 (45)
126 3zxw_B Ribulose bisphosphate c 24.3 1E+02 0.0034 17.2 5.3 40 39-80 69-108 (118)
127 3ju3_A Probable 2-oxoacid ferr 23.8 31 0.0011 18.8 1.1 22 28-49 93-114 (118)
128 1vq8_Q 50S ribosomal protein L 23.8 9.7 0.00033 20.6 -0.9 29 7-35 34-69 (96)
129 1va8_A Maguk P55 subfamily mem 23.5 91 0.0031 16.4 4.6 26 26-51 68-97 (113)
130 3kv4_A PHD finger protein 8; e 23.5 1.7E+02 0.006 20.1 5.0 41 7-48 305-345 (447)
131 1tig_A IF3-C, translation init 23.5 13 0.00043 19.9 -0.5 59 6-77 31-90 (94)
132 1cpz_A Protein (COPZ); copper 23.4 61 0.0021 14.4 5.3 45 40-92 15-59 (68)
133 3lno_A Putative uncharacterize 23.3 94 0.0032 16.5 3.3 27 40-66 64-91 (108)
134 2ego_A General receptor for ph 22.8 85 0.0029 15.8 4.3 25 28-52 59-86 (96)
135 1mhn_A SurviVal motor neuron p 22.8 32 0.0011 16.3 0.9 16 7-22 4-21 (59)
136 2w25_A Probable transcriptiona 22.5 1.1E+02 0.0037 16.9 5.2 20 41-60 82-101 (150)
137 3n8e_A Stress-70 protein, mito 22.4 61 0.0021 19.2 2.3 37 13-49 107-149 (182)
138 2l6o_A Uncharacterized protein 21.9 1.1E+02 0.0037 16.9 3.1 43 7-53 45-88 (114)
139 3kv5_D JMJC domain-containing 21.9 1.3E+02 0.0045 20.9 4.1 41 7-48 340-380 (488)
140 1v58_A Thiol:disulfide interch 21.9 30 0.001 21.2 0.9 31 11-44 39-69 (241)
141 1wqc_A OMTX1; toxin; NMR {Opis 21.9 19 0.00064 14.3 -0.0 15 42-56 3-17 (26)
142 2eaq_A LIM domain only protein 21.8 86 0.0029 15.5 2.9 25 26-50 47-75 (90)
143 1wif_A RSGI RUH-020, riken cDN 21.7 1.1E+02 0.0038 16.8 4.2 24 28-51 72-98 (126)
144 4e81_A Chaperone protein DNAK; 21.2 64 0.0022 19.7 2.3 37 13-49 88-130 (219)
145 3h0x_A 78 kDa glucose-regulate 21.2 78 0.0027 18.1 2.6 37 13-49 87-130 (152)
146 2cs7_A Pneumococcal histidine 21.2 48 0.0016 15.9 1.3 21 3-23 7-28 (55)
147 1osd_A MERP, hypothetical prot 21.2 72 0.0024 14.3 5.0 54 31-92 7-62 (72)
148 3k3o_A PHF8, PHD finger protei 21.1 1.5E+02 0.0051 19.9 4.1 42 7-49 221-262 (371)
149 3cjk_B Copper-transporting ATP 21.1 75 0.0026 14.5 5.2 53 32-92 7-61 (75)
150 1kvi_A Copper-transporting ATP 20.9 78 0.0027 14.7 4.7 54 31-92 12-67 (79)
151 2nnz_A Hypothetical protein; b 20.8 73 0.0025 18.5 2.3 18 6-23 91-108 (153)
152 3bc8_A O-phosphoseryl-tRNA(SEC 20.7 1.8E+02 0.0063 19.9 4.6 17 35-51 179-195 (450)
153 1vae_A Rhophilin 2, rhophilin, 20.6 1.1E+02 0.0037 16.2 3.0 25 28-52 58-85 (111)
154 3qik_A Phosphatidylinositol 3, 20.5 1.1E+02 0.0037 16.4 2.8 23 28-50 61-86 (101)
155 1q8l_A Copper-transporting ATP 20.5 86 0.0029 15.0 2.9 46 39-92 23-68 (84)
156 2ofg_X Zinc-transporting ATPas 20.4 1.1E+02 0.0036 16.0 5.2 54 31-92 12-67 (111)
157 2o95_A 26S proteasome non-ATPa 20.3 27 0.00094 20.6 0.5 9 5-13 94-102 (187)
158 4evu_A Putative periplasmic pr 20.2 42 0.0014 17.0 1.1 33 29-61 21-56 (72)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.95 E-value=2.9e-27 Score=162.85 Aligned_cols=94 Identities=23% Similarity=0.341 Sum_probs=88.5
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|+++|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|+..++.
T Consensus 407 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 486 (536)
T 3ni2_A 407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS 486 (536)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred ccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999988899999999998887
Q ss_pred CCCHHHHHHHHhcC
Q psy5015 81 KLNADDIRTFCKGK 94 (94)
Q Consensus 81 ~~~~~~l~~~l~~~ 94 (94)
..+.++|+++|+++
T Consensus 487 ~~~~~~l~~~l~~~ 500 (536)
T 3ni2_A 487 QATEDEIKQYISKQ 500 (536)
T ss_dssp CCCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 88899999999864
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.95 E-value=4.6e-27 Score=160.96 Aligned_cols=94 Identities=32% Similarity=0.502 Sum_probs=88.3
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|..+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++.++.
T Consensus 372 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 451 (503)
T 4fuq_A 372 FRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA 451 (503)
T ss_dssp BCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred hCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999998899999999998888
Q ss_pred CCCHHHHHHHHhcC
Q psy5015 81 KLNADDIRTFCKGK 94 (94)
Q Consensus 81 ~~~~~~l~~~l~~~ 94 (94)
..+.++++++|+++
T Consensus 452 ~~~~~~l~~~l~~~ 465 (503)
T 4fuq_A 452 TIDEAQVLHGLDGQ 465 (503)
T ss_dssp CCCHHHHHHHHBTT
T ss_pred CCCHHHHHHHHHhh
Confidence 88999999998764
No 3
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.94 E-value=1.3e-26 Score=158.57 Aligned_cols=90 Identities=37% Similarity=0.593 Sum_probs=85.7
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++...+
T Consensus 378 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 457 (504)
T 1t5h_X 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS 457 (504)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC
T ss_pred CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC
Confidence 68999999999999999999999999999999999999999999999999999999999988899999999998877788
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 458 ~~~l~~~~~~ 467 (504)
T 1t5h_X 458 ADALDTFCRS 467 (504)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 8999999975
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.94 E-value=9.3e-27 Score=160.85 Aligned_cols=93 Identities=24% Similarity=0.353 Sum_probs=87.2
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+.+|||+|||+|+++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++..
T Consensus 415 ~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~ 494 (548)
T 2d1s_A 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN 494 (548)
T ss_dssp CTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred cCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999888899999999988777
Q ss_pred CCHHHHHHHHhcC
Q psy5015 82 LNADDIRTFCKGK 94 (94)
Q Consensus 82 ~~~~~l~~~l~~~ 94 (94)
.+.++|+++|+++
T Consensus 495 ~~~~~l~~~~~~~ 507 (548)
T 2d1s_A 495 MTEKEVMDYVASQ 507 (548)
T ss_dssp CCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh
Confidence 8889999998764
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.94 E-value=2e-26 Score=158.81 Aligned_cols=93 Identities=30% Similarity=0.467 Sum_probs=85.1
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|..+|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++++ .
T Consensus 403 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~ 481 (539)
T 1mdb_A 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-E 481 (539)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-S
T ss_pred ccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-C
Confidence 346899999999999999999999999999999999999999999999999999999999999888889999999874 4
Q ss_pred CCCHHHHHHHHhcC
Q psy5015 81 KLNADDIRTFCKGK 94 (94)
Q Consensus 81 ~~~~~~l~~~l~~~ 94 (94)
..+.++|+++|+++
T Consensus 482 ~~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 482 APKAAELKAFLRER 495 (539)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhC
Confidence 57788999998763
No 6
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.94 E-value=6.3e-26 Score=155.50 Aligned_cols=93 Identities=30% Similarity=0.360 Sum_probs=85.0
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC-
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE- 78 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~- 78 (94)
|..+|||+|||+|+++++|+++|.||. |++||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++.+
T Consensus 378 f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~ 457 (505)
T 3nyq_A 378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP 457 (505)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST
T ss_pred hcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC
Confidence 346899999999999999999999998 599999999999999999999999999999999999988999999999876
Q ss_pred CCCCCHHHHHHHHhc
Q psy5015 79 NAKLNADDIRTFCKG 93 (94)
Q Consensus 79 ~~~~~~~~l~~~l~~ 93 (94)
....+.++|+++|++
T Consensus 458 ~~~~~~~~l~~~l~~ 472 (505)
T 3nyq_A 458 AAPPALGTLADHVAA 472 (505)
T ss_dssp TSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 445678899998875
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.93 E-value=2.8e-26 Score=158.34 Aligned_cols=92 Identities=27% Similarity=0.399 Sum_probs=68.1
Q ss_pred CCC--eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC-
Q psy5015 3 GYA--CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN- 79 (94)
Q Consensus 3 ~~~--~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~- 79 (94)
.+| ||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++
T Consensus 412 ~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 491 (549)
T 3g7s_A 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY 491 (549)
T ss_dssp TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT
T ss_pred CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc
Confidence 445 99999999999999999999999999999999999999999999999999999999998888999999999876
Q ss_pred -CCCCHHHHHHHHhcC
Q psy5015 80 -AKLNADDIRTFCKGK 94 (94)
Q Consensus 80 -~~~~~~~l~~~l~~~ 94 (94)
...+.++|+++|+++
T Consensus 492 ~~~~~~~~l~~~l~~~ 507 (549)
T 3g7s_A 492 RGKVDEEDIIEWVRER 507 (549)
T ss_dssp TTSCCHHHHHHHHHTT
T ss_pred cCcCCHHHHHHHHHHh
Confidence 567889999999864
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.93 E-value=9.2e-26 Score=158.66 Aligned_cols=91 Identities=23% Similarity=0.371 Sum_probs=83.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...
T Consensus 492 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~ 571 (652)
T 1pg4_A 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP 571 (652)
T ss_dssp STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999998888999999999877555
Q ss_pred C---HHHHHHHHhc
Q psy5015 83 N---ADDIRTFCKG 93 (94)
Q Consensus 83 ~---~~~l~~~l~~ 93 (94)
+ .++|+++|++
T Consensus 572 ~~~~~~~l~~~l~~ 585 (652)
T 1pg4_A 572 SPELYAEVRNWVRK 585 (652)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 4 4678888764
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.93 E-value=1.2e-25 Score=156.32 Aligned_cols=90 Identities=30% Similarity=0.424 Sum_probs=82.7
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.+.++|++.++...+
T Consensus 451 ~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~ 530 (580)
T 3etc_A 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS 530 (580)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999998999999999998875544
Q ss_pred H---HHHHHHHhc
Q psy5015 84 A---DDIRTFCKG 93 (94)
Q Consensus 84 ~---~~l~~~l~~ 93 (94)
. ++|+++|++
T Consensus 531 ~~~~~~l~~~l~~ 543 (580)
T 3etc_A 531 DSLKNELQDHVKN 543 (580)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3 578887764
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.93 E-value=9.1e-26 Score=154.96 Aligned_cols=89 Identities=34% Similarity=0.567 Sum_probs=82.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++++ +.++...+
T Consensus 389 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~ 467 (517)
T 3r44_A 389 NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVS 467 (517)
T ss_dssp TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCC
T ss_pred CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999988888888888 66666788
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 468 ~~~l~~~l~~ 477 (517)
T 3r44_A 468 EQQIVEYCGT 477 (517)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999999875
No 11
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.93 E-value=2.1e-25 Score=154.63 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=82.2
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++++... ..
T Consensus 405 g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~ 482 (563)
T 1amu_A 405 GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HI 482 (563)
T ss_dssp TSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CC
T ss_pred CCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CC
Confidence 4679999999999999999999999999999999999999999999999999999999998888889999998764 46
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|+++|++
T Consensus 483 ~~~~l~~~l~~ 493 (563)
T 1amu_A 483 PLEQLRQFSSE 493 (563)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 78899998875
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.93 E-value=4.8e-27 Score=162.16 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|+.+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++.++.
T Consensus 412 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~ 491 (550)
T 3rix_A 412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491 (550)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEC--------------------------------------------------------
T ss_pred cCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999988899999999988877
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.++|+++|++
T Consensus 492 ~~~~~~l~~~~~~ 504 (550)
T 3rix_A 492 TMTEKEIVDYVAS 504 (550)
T ss_dssp -------------
T ss_pred CCCHHHHHHHHHH
Confidence 7777888888765
No 13
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.92 E-value=4.7e-26 Score=157.07 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=60.2
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
..+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++. +..
T Consensus 409 ~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~ 487 (541)
T 1v25_A 409 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEK 487 (541)
T ss_dssp CTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------
T ss_pred cCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCC
Confidence 3479999999999999999999999999999999999999999999999999999999999988889999999876 344
Q ss_pred CCHHHHHHHHhc
Q psy5015 82 LNADDIRTFCKG 93 (94)
Q Consensus 82 ~~~~~l~~~l~~ 93 (94)
.+.++++++|++
T Consensus 488 ~~~~~l~~~~~~ 499 (541)
T 1v25_A 488 PTPEELNEHLLK 499 (541)
T ss_dssp ------------
T ss_pred CCHHHHHHHHHh
Confidence 566778887765
No 14
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.92 E-value=1.1e-24 Score=152.24 Aligned_cols=91 Identities=36% Similarity=0.502 Sum_probs=84.0
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|++++||+|||+|++++||.++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++++++.+
T Consensus 407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-- 484 (617)
T 3rg2_A 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE-- 484 (617)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence 456899999999999999999999999999999999999999999999999999999999998888889999999876
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.+++++++++
T Consensus 485 ~~~~~~l~~~l~~ 497 (617)
T 3rg2_A 485 PLRAVQVRRFLRE 497 (617)
T ss_dssp CCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 4678889998875
No 15
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.92 E-value=7.8e-25 Score=149.46 Aligned_cols=88 Identities=26% Similarity=0.442 Sum_probs=81.8
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
+|||+|||+|+++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++... ..+
T Consensus 374 ~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~~~ 451 (501)
T 3ipl_A 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--DIS 451 (501)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCC
T ss_pred CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--CCC
Confidence 689999999999999999999999999999999999999999999999999999999999888889999988643 467
Q ss_pred HHHHHHHHhc
Q psy5015 84 ADDIRTFCKG 93 (94)
Q Consensus 84 ~~~l~~~l~~ 93 (94)
.++|+++|++
T Consensus 452 ~~~l~~~l~~ 461 (501)
T 3ipl_A 452 KAQLIAYLSK 461 (501)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8899998875
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.92 E-value=2.5e-26 Score=159.18 Aligned_cols=92 Identities=22% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC-CC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~ 81 (94)
++|||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|++.+. ..
T Consensus 444 ~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~ 523 (570)
T 4gr5_A 444 GERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP 523 (570)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEC--------------------------------------------------------
T ss_pred CCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC
Confidence 45899999999999999999999999999999999999999999999999999999999888888889999987653 34
Q ss_pred CCHHHHHHHHhcC
Q psy5015 82 LNADDIRTFCKGK 94 (94)
Q Consensus 82 ~~~~~l~~~l~~~ 94 (94)
.+.++|+++|+++
T Consensus 524 ~~~~~l~~~l~~~ 536 (570)
T 4gr5_A 524 PDAAELRRHVAEA 536 (570)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHhh
Confidence 5677888888753
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.92 E-value=1.4e-24 Score=148.65 Aligned_cols=91 Identities=18% Similarity=0.070 Sum_probs=80.5
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+++|||+|||+|++ ++|+++|.||.||+||++|++|+|.+||++|.+||.|.+|+|++.++...++.++++|++.++..
T Consensus 374 ~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~ 452 (512)
T 3fce_A 374 DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF 452 (512)
T ss_dssp TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc
Confidence 45789999999999 79999999999999999999999999999999999999999999998888889999999877654
Q ss_pred CCH----HHHHHHHhc
Q psy5015 82 LNA----DDIRTFCKG 93 (94)
Q Consensus 82 ~~~----~~l~~~l~~ 93 (94)
.+. ++|+++|++
T Consensus 453 ~~~~~~~~~l~~~l~~ 468 (512)
T 3fce_A 453 EKEFKLTSAIKKELNE 468 (512)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHh
Confidence 443 467777765
No 18
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.92 E-value=5.4e-26 Score=156.83 Aligned_cols=92 Identities=36% Similarity=0.441 Sum_probs=26.3
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|+++|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++.+ .
T Consensus 412 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~ 490 (544)
T 3o83_A 412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-P 490 (544)
T ss_dssp BCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------------
T ss_pred CCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-C
Confidence 357899999999999999999999999999999999999999999999999999999999999888999999998765 3
Q ss_pred CCCHHHHHHHHhc
Q psy5015 81 KLNADDIRTFCKG 93 (94)
Q Consensus 81 ~~~~~~l~~~l~~ 93 (94)
..+.++++++|++
T Consensus 491 ~~~~~~l~~~~~~ 503 (544)
T 3o83_A 491 ELKAVVLRRHLME 503 (544)
T ss_dssp -------------
T ss_pred CCCHHHHHHHHHh
Confidence 4556677777654
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.91 E-value=6.7e-25 Score=154.65 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=78.5
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC--
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-- 81 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-- 81 (94)
+|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++..
T Consensus 502 ~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~ 581 (663)
T 1ry2_A 502 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 581 (663)
T ss_dssp TTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred CCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence 689999999999999999999999999999999999999999999999999999999998888899999999987643
Q ss_pred -C-C------HHHHHHHHhc
Q psy5015 82 -L-N------ADDIRTFCKG 93 (94)
Q Consensus 82 -~-~------~~~l~~~l~~ 93 (94)
. + .++|+++|++
T Consensus 582 ~~~~~~~~~l~~~l~~~l~~ 601 (663)
T 1ry2_A 582 TATDDELQDIKKHLVFTVRK 601 (663)
T ss_dssp ------CCSHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 2 1 4677777764
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.91 E-value=1.4e-24 Score=150.76 Aligned_cols=90 Identities=30% Similarity=0.391 Sum_probs=79.9
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC-C
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-L 82 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~ 82 (94)
++||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++.++.. .
T Consensus 432 ~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 511 (570)
T 3c5e_A 432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH 511 (570)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS
T ss_pred CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc
Confidence 589999999999999999999999999999999999999999999999999999999999888889999999876531 1
Q ss_pred C----HHHHHHHHhc
Q psy5015 83 N----ADDIRTFCKG 93 (94)
Q Consensus 83 ~----~~~l~~~l~~ 93 (94)
+ .++|+++|++
T Consensus 512 ~~~~~~~~l~~~l~~ 526 (570)
T 3c5e_A 512 DPEQLTKELQQHVKS 526 (570)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 2 4567777754
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.91 E-value=1.2e-25 Score=163.37 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
|+++|||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++|++.++.
T Consensus 454 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~ 533 (979)
T 3tsy_A 454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS 533 (979)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------------
T ss_pred ccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999888889999999988776
Q ss_pred CCCHHHHHHHHhcC
Q psy5015 81 KLNADDIRTFCKGK 94 (94)
Q Consensus 81 ~~~~~~l~~~l~~~ 94 (94)
..+.++|+++|+++
T Consensus 534 ~~~~~~l~~~l~~~ 547 (979)
T 3tsy_A 534 ELSEDDVKQFVSKQ 547 (979)
T ss_dssp --------------
T ss_pred CCCHHHHHHHHHHh
Confidence 77778888888753
No 22
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.91 E-value=1e-23 Score=144.41 Aligned_cols=88 Identities=18% Similarity=0.042 Sum_probs=78.0
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 84 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 84 (94)
+||+|||+|++ +||+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.+++++++.++...+.
T Consensus 376 ~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~ 454 (511)
T 3e7w_A 376 WAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE 454 (511)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSH
T ss_pred EEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccch
Confidence 38999999999 59999999999999999999999999999999999999999999998888899999999987654443
Q ss_pred ----HHHHHHHhc
Q psy5015 85 ----DDIRTFCKG 93 (94)
Q Consensus 85 ----~~l~~~l~~ 93 (94)
++|+++|++
T Consensus 455 ~~~~~~l~~~l~~ 467 (511)
T 3e7w_A 455 FQLTSAIKKELAA 467 (511)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 566766654
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.91 E-value=1.3e-24 Score=148.87 Aligned_cols=92 Identities=21% Similarity=0.146 Sum_probs=72.5
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCC-CCceEEEEEEEcCCC
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKENA 80 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~ 80 (94)
+++|||+|||+|+++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.++.. .++.++++|+++++.
T Consensus 377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 4678999999999999999999999999999999999999999999999999999999887554 457889999998764
Q ss_pred CCC-------HHHHHHHHhc
Q psy5015 81 KLN-------ADDIRTFCKG 93 (94)
Q Consensus 81 ~~~-------~~~l~~~l~~ 93 (94)
..+ .++|+++|++
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~ 476 (521)
T 3l8c_A 457 KERFDRELELTKAIKASVKD 476 (521)
T ss_dssp GGGCSSHHHHHHHHHHHSGG
T ss_pred ccccccchhhHHHHHHHHHh
Confidence 321 4678887765
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.91 E-value=1.8e-25 Score=153.00 Aligned_cols=91 Identities=31% Similarity=0.494 Sum_probs=23.4
Q ss_pred CCeEEcCceEEEecCCeEEEEeec--CCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+|||+|||+|+++++|+++|.||. +|+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.+++++++.++..
T Consensus 374 ~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 453 (509)
T 3ivr_A 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES 453 (509)
T ss_dssp GGSEEEEEEEEECTTSCEEEEEEC--------------------------------------------------------
T ss_pred cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC
Confidence 689999999999999999999999 999999999999999999999999999999999999888899999999888777
Q ss_pred CCHHHHHHHHhcC
Q psy5015 82 LNADDIRTFCKGK 94 (94)
Q Consensus 82 ~~~~~l~~~l~~~ 94 (94)
.+.++|+++|+++
T Consensus 454 ~~~~~l~~~l~~~ 466 (509)
T 3ivr_A 454 IAADALAEFVASL 466 (509)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHhh
Confidence 7778888888753
No 25
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.90 E-value=1.9e-23 Score=155.25 Aligned_cols=89 Identities=25% Similarity=0.259 Sum_probs=81.8
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
+++||+|||+|++++||.++|+||.|++||++|+||+|.|||++|.+||+|.+|+|++.++..++..++++++..+ ..
T Consensus 836 g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~ 913 (1304)
T 2vsq_A 836 GETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QL 913 (1304)
T ss_dssp TCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SS
T ss_pred CCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CC
Confidence 5679999999999999999999999999999999999999999999999999999999988878889999998754 46
Q ss_pred CHHHHHHHHhc
Q psy5015 83 NADDIRTFCKG 93 (94)
Q Consensus 83 ~~~~l~~~l~~ 93 (94)
+.++|+++|++
T Consensus 914 ~~~~l~~~l~~ 924 (1304)
T 2vsq_A 914 SAEDVKAHLKK 924 (1304)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 78889998875
No 26
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.89 E-value=3e-23 Score=142.53 Aligned_cols=90 Identities=26% Similarity=0.321 Sum_probs=75.1
Q ss_pred CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 83 (94)
++||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+++|++. ++..++.+++++++.++...+
T Consensus 405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~ 483 (529)
T 2v7b_A 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS 483 (529)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999 556777889999987654322
Q ss_pred ---HHHHHHHHhcC
Q psy5015 84 ---ADDIRTFCKGK 94 (94)
Q Consensus 84 ---~~~l~~~l~~~ 94 (94)
.++|+++|+++
T Consensus 484 ~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 484 EILAEELKAFVKDR 497 (529)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhh
Confidence 35788888753
No 27
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.89 E-value=6.7e-24 Score=140.63 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh---cCCCeeeEEEE-EeeCCCCCceEEEEEEEc
Q psy5015 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPNVLEAYAY-GVPDERMGEEVGISIKLK 77 (94)
Q Consensus 2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~ 77 (94)
..+|||+|||+|+++++| ++|+||.||+||++|+||+|.|||++|. +||.|.+++|+ +.+++..++.++++|+..
T Consensus 225 ~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~ 303 (358)
T 4gs5_A 225 TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA 303 (358)
T ss_dssp GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence 357999999999999888 6678999999999999999999998774 58999998776 667887888888888754
Q ss_pred CCCCCCHHHHHHHHhc
Q psy5015 78 ENAKLNADDIRTFCKG 93 (94)
Q Consensus 78 ~~~~~~~~~l~~~l~~ 93 (94)
.. ..+.++|+++|++
T Consensus 304 ~~-~~~~~~l~~~l~~ 318 (358)
T 4gs5_A 304 MP-EALTERLTAEIRS 318 (358)
T ss_dssp CC-HHHHHHHHHHHHH
T ss_pred CC-CcCHHHHHHHHHh
Confidence 32 3455778888875
No 28
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.88 E-value=8.8e-23 Score=137.48 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCeEEcCceEEEecCC------e---EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEE
Q psy5015 3 GYACGLKQDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G------~---~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 73 (94)
..+||+|||+++++++| + ++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.+.++
T Consensus 297 ~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~ 376 (436)
T 3qov_A 297 PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVE 376 (436)
T ss_dssp CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEE
T ss_pred eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEE
Confidence 36899999999999998 5 69999999999999999999999999999999999999999888788899999
Q ss_pred EEEcCCCCCC----HHHHHHHHhc
Q psy5015 74 IKLKENAKLN----ADDIRTFCKG 93 (94)
Q Consensus 74 v~~~~~~~~~----~~~l~~~l~~ 93 (94)
|++. +...+ .++++++|++
T Consensus 377 v~~~-~~~~~~~~~~~~l~~~l~~ 399 (436)
T 3qov_A 377 VELS-DLSTDNYIELEKIRRDIIR 399 (436)
T ss_dssp EEEC-TTCCCCHHHHHHHHHHHHH
T ss_pred EEEc-CccccchhhHHHHHHHHHH
Confidence 9998 55554 5666666653
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.88 E-value=5.8e-24 Score=146.90 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLKENAK 81 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 81 (94)
+++||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+| |.+.+++|++.+++..++..++.++..++..
T Consensus 402 g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~ 481 (562)
T 3ite_A 402 GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAA 481 (562)
T ss_dssp TEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred CCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccc
Confidence 345999999999999999999999999999999999999999999998 7788888888888877766665555443322
Q ss_pred CC-------------HHHHHHHHhc
Q psy5015 82 LN-------------ADDIRTFCKG 93 (94)
Q Consensus 82 ~~-------------~~~l~~~l~~ 93 (94)
.. .++|+++|++
T Consensus 482 ~~~~~~~~~~~~~~~~~~l~~~~~~ 506 (562)
T 3ite_A 482 VRGELRWINENYKEINNSLRQACEQ 506 (562)
T ss_dssp -------------------------
T ss_pred ccccccccccchhhHHHHHHHHHHh
Confidence 21 2467777765
No 30
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.87 E-value=1.2e-22 Score=137.08 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCeEEcCceEEEecC-CeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 4 YACGLKQDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 4 ~~~~~TGD~~~~~~~-G~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
.+||+|||+++++++ |++ +|.||.||+||++|.+|+|.+||++|.+||+|.++++++++++..++.+.++|++.
T Consensus 305 ~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~ 384 (443)
T 2y4o_A 305 VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELR 384 (443)
T ss_dssp CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEEC
Confidence 589999999999999 986 89999999999999999999999999999999999999988776778899999987
Q ss_pred C--CC---CCCHHHHHHHHhc
Q psy5015 78 E--NA---KLNADDIRTFCKG 93 (94)
Q Consensus 78 ~--~~---~~~~~~l~~~l~~ 93 (94)
+ +. ..+.++++++|++
T Consensus 385 ~~~~~~~~~~~~~~l~~~l~~ 405 (443)
T 2y4o_A 385 SEAAASVTDGERAALARELQH 405 (443)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHHHHHHHH
Confidence 5 21 2334567766654
No 31
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.87 E-value=7.9e-23 Score=137.76 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=77.6
Q ss_pred CCeEEcCceEEEec-CCeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 4 YACGLKQDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 4 ~~~~~TGD~~~~~~-~G~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
++||+|||++++++ +|++ +|.||.||+||++|.+|+|.+||++|.+||.|.++++++++++..++.++++|++.
T Consensus 303 ~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~ 382 (437)
T 2y27_A 303 IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPC 382 (437)
T ss_dssp CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBC
T ss_pred hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEEC
Confidence 58999999999999 6985 89999999999999999999999999999999999999888777778899999987
Q ss_pred CCCC---CCHHHHHHHHhc
Q psy5015 78 ENAK---LNADDIRTFCKG 93 (94)
Q Consensus 78 ~~~~---~~~~~l~~~l~~ 93 (94)
++.. .+.++++++|++
T Consensus 383 ~~~~~~~~~~~~l~~~l~~ 401 (437)
T 2y27_A 383 PETAPDTAAIQVAKQALAY 401 (437)
T ss_dssp TTTTTCHHHHHHHHHHHHH
T ss_pred CCccchhhhHHHHHHHHHH
Confidence 6543 234566666654
No 32
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.86 E-value=6.4e-23 Score=142.06 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=74.3
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHH-hcCCCee--eEEEEEeeCCCCCceEEEEEEEcCCC-
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA- 80 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~- 80 (94)
+||+|||+|+++ +|.++|.||.||+||++|++|+|.|||++| ..+|.|. +|+|++++++. ++.+++++++.++.
T Consensus 436 ~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~ 513 (590)
T 3kxw_A 436 IYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM 513 (590)
T ss_dssp CBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC
T ss_pred cEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc
Confidence 499999999999 999999999999999999999999999999 7899998 79999988765 67788888887653
Q ss_pred -CCCHHHHHHHHhc
Q psy5015 81 -KLNADDIRTFCKG 93 (94)
Q Consensus 81 -~~~~~~l~~~l~~ 93 (94)
..+.++|.++|++
T Consensus 514 ~~~~~~~l~~~l~~ 527 (590)
T 3kxw_A 514 DDVAQDNLFNEIFE 527 (590)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHH
Confidence 2345667776654
No 33
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.86 E-value=1.5e-21 Score=136.81 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=68.2
Q ss_pred CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 84 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 84 (94)
+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..+. ++++++... ....
T Consensus 396 ~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~--~~~~ 472 (620)
T 4dg8_A 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA--DASP 472 (620)
T ss_dssp EEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT--TCCC
T ss_pred eEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh--HHHH
Confidence 7999999999999999999999999999999999999999999999999999999988764444 444444332 2233
Q ss_pred HHHHHHH
Q psy5015 85 DDIRTFC 91 (94)
Q Consensus 85 ~~l~~~l 91 (94)
+++++.|
T Consensus 473 ~~l~~~L 479 (620)
T 4dg8_A 473 QALLRQL 479 (620)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 4454443
No 34
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.85 E-value=9.6e-22 Score=135.64 Aligned_cols=87 Identities=25% Similarity=0.314 Sum_probs=69.1
Q ss_pred CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015 3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 82 (94)
.+|||+|||+|++ +||+++|.||.||+||++|++|+|.|||++|.+||.|.++++++...+.. ...+++........
T Consensus 437 ~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~ 513 (576)
T 3gqw_A 437 ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDEE 513 (576)
T ss_dssp HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCHH
T ss_pred CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCc--cEEEEEEEecCchh
Confidence 3689999999999 69999999999999999999999999999999999999988888876643 34444444433223
Q ss_pred CHHHHHHHHh
Q psy5015 83 NADDIRTFCK 92 (94)
Q Consensus 83 ~~~~l~~~l~ 92 (94)
..++++++|+
T Consensus 514 ~~~~l~~~l~ 523 (576)
T 3gqw_A 514 RRGQLIHALA 523 (576)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445655554
No 35
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.71 E-value=7.1e-17 Score=91.17 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=54.8
Q ss_pred eecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH
Q psy5015 25 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 84 (94)
Q Consensus 25 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 84 (94)
.|.|||||++|.|+||.+||++|.+||+|.++++++++++.+++.+.++|++.++...+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence 389999999999999999999999999999999999999888999999999988765554
No 36
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.67 E-value=2.7e-16 Score=88.88 Aligned_cols=55 Identities=24% Similarity=0.424 Sum_probs=50.2
Q ss_pred eecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 25 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 25 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
||.||||+++|.|++|.+||++|.+||+|.++++++.+++.+++.+.+++++ ++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~ 55 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL 55 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc
Confidence 8999999999999999999999999999999888888877778889999998 653
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.36 E-value=1.6e-06 Score=61.24 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=39.4
Q ss_pred EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
|++||++++.. ...+.|.||.++++++.|.++++.+||+++.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 99999999974 45799999999999999999999999999884
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.30 E-value=1.4e-06 Score=61.27 Aligned_cols=44 Identities=7% Similarity=-0.012 Sum_probs=40.1
Q ss_pred EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
|++||++++.. ..++.|.||.++++++.|+++++.+||+++.+.
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 99999999985 357899999999999999999999999999853
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.17 E-value=2e-05 Score=55.51 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=54.4
Q ss_pred EEcCceEEEecC----CeEEEEeecCCeEEeCcEEeChHHHHHHHhc------CC--CeeeEEEEEeeCCCCCceEEEEE
Q psy5015 7 GLKQDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT------HP--NVLEAYAYGVPDERMGEEVGISI 74 (94)
Q Consensus 7 ~~TGD~~~~~~~----G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~------~~--~v~~~~v~~~~~~~~~~~~~~~v 74 (94)
|++||++++..- ..+.|.||.++++++.|.++++.+||+++.+ .. .+.+..+........+ +-+.+.
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~w 485 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFW 485 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEE
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEE
Confidence 999999998742 4689999999999999999999999999875 12 3556555543222223 333445
Q ss_pred EEcCCCCCCHHHHHHH
Q psy5015 75 KLKENAKLNADDIRTF 90 (94)
Q Consensus 75 ~~~~~~~~~~~~l~~~ 90 (94)
++.. ..+.+.+.+.
T Consensus 486 E~~~--~~~~~~l~~~ 499 (581)
T 4epl_A 486 EISG--ETNEDVLQDC 499 (581)
T ss_dssp EESS--CCCHHHHHHH
T ss_pred eecC--CCCHHHHHHH
Confidence 6642 2344444443
No 40
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=83.54 E-value=3.1 Score=21.19 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=29.1
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
..++++.|.++|.|.+|..+.-+. ...+.+.. .+.+++.+++.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~-----~d~~~l~~~i~ 57 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVET-----DTLKDLDQFIT 57 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEE-----SSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEE-----CCHHHHHHHHH
Confidence 478999999999999988763322 24455543 45666666654
No 41
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=83.45 E-value=2.6 Score=21.89 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.1
Q ss_pred hHHHHHHHhcCCCeeeEEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~ 60 (94)
..++.+.|.++|.|.+|..+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt 35 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVT 35 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEES
T ss_pred HHHHHHHHhcCCCeEEEEEee
Confidence 578889999999999998773
No 42
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=77.58 E-value=5.2 Score=20.05 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=27.9
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
..++.+.|.++|.|.+|..+.-+. ...+.+.. .+.+++.+++.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~-----d~l~~v~~-----~d~~~l~~~~~ 57 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVY-----DIVVKVEA-----DSMDKLKDFVT 57 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSC-----SEEEEEEC-----SSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEeccC-----CEEEEEEE-----CCHHHHHHHHH
Confidence 478889999999999988763221 24444443 45566665553
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.97 E-value=1.5 Score=28.40 Aligned_cols=31 Identities=10% Similarity=-0.056 Sum_probs=14.2
Q ss_pred eEEcCceEEEecC--C-------eEEEEeecCCeEEeCcE
Q psy5015 6 CGLKQDQFVLRED--G-------YGQVVGRIKDMIIRGGE 36 (94)
Q Consensus 6 ~~~TGD~~~~~~~--G-------~~~~~GR~~d~i~~~G~ 36 (94)
.|+|||+++..+. | .+..++|.++..++.|.
T Consensus 329 ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 329 RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 5899999988653 3 24567777888877774
No 44
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=65.30 E-value=12 Score=23.73 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=33.3
Q ss_pred CeEEc-CceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEE
Q psy5015 5 ACGLK-QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 5 ~~~~T-GD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 59 (94)
-|+|+ +|-.++.++|++.+--+-.. --.|.+++..|.+.|+|-+.-.+
T Consensus 183 ~~lR~~~~gp~vTDnGN~IlD~~f~~-------i~dp~~l~~~l~~i~GVVe~GLF 231 (255)
T 3hhe_A 183 ITLRMNGDDPFKTDGGHFIFDAFWGR-------ILQPKLLSEALLAIPGVVEHGLF 231 (255)
T ss_dssp EEECEETTEECCCTTSCEEEEECCSC-------CSCHHHHHHHHHTSTTEEEESEE
T ss_pred EEEeeCCCCcEEcCCCCEEEEeeCCC-------cCCHHHHHHHHhcCCCEeeeccc
Confidence 46666 45456677787765444332 24899999999999999876555
No 45
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=64.75 E-value=10 Score=18.11 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
...||..|.+.|+|..+.+-.... .+.|...+ ...+.++|.+.++
T Consensus 17 ~~~ie~~l~~~~gv~~~~v~~~~~-------~~~v~~~~-~~~~~~~i~~~i~ 61 (74)
T 3dxs_X 17 SNSVEAALMNVNGVFKASVALLQN-------RADVVFDP-NLVKEEDIKEEIE 61 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEEGGGT-------EEEEEECT-TTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEecCC-------EEEEEECC-CCCCHHHHHHHHH
Confidence 467999999999998776642221 23344433 2357777877665
No 46
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=62.09 E-value=11 Score=17.63 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=28.8
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
...||..|.+.|+|..+.+-.. .+ . +.|.. + ...+.++|.+.+++
T Consensus 17 ~~~i~~~l~~~~gv~~~~v~~~----~~-~--~~v~~-~-~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 17 ASSIERAIAKVPGVQSCQVNFA----LE-Q--AVVSY-H-GETTPQILTDAVER 61 (69)
T ss_dssp HHHHHHHHHTSTTEEEEEEETT----TT-E--EEEEE-C-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEEec----CC-E--EEEEE-C-CCCCHHHHHHHHHH
Confidence 4679999999999987665321 11 1 23333 2 35677888877653
No 47
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=61.19 E-value=11 Score=20.48 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=21.4
Q ss_pred CCCeEEcCceEE-EecCCe-EEEEeecCCeE
Q psy5015 3 GYACGLKQDQFV-LREDGY-GQVVGRIKDMI 31 (94)
Q Consensus 3 ~~~~~~TGD~~~-~~~~G~-~~~~GR~~d~i 31 (94)
..+|+-|+|--. .+.||. +.|..|.++.-
T Consensus 55 p~~W~ptPDGi~L~~~dGs~l~ff~r~~~~y 85 (101)
T 1smp_I 55 PVGWRPTPDGLTLTQADGSAVAFFSRNRDRY 85 (101)
T ss_dssp CCEEEECSSEEEEECTTSCEEEEEEEETTEE
T ss_pred CcccccCCCEEEEEcCCCCEEEEecccCCcc
Confidence 358999999544 567774 78889988733
No 48
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=59.72 E-value=18 Score=19.16 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=32.5
Q ss_pred eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
|+.-||-+.+. +.|.|| ...+++.-..+|... ..+.+.+.+-......|.....++.+.
T Consensus 26 FL~~GdKVKvt----i~fRGR---------E~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m~l~Pk 85 (89)
T 1i96_V 26 FLQEGHKVKVT----IMFRGR---------EVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPV 85 (89)
T ss_pred HHHCCCEEEEE----EEECCc---------cccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEEEEEeC
Confidence 55556666553 556666 334566666666663 445555544433333566666666654
No 49
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=59.46 E-value=10 Score=17.29 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=13.8
Q ss_pred EEeChHHHHHHHhcCCC
Q psy5015 36 ENIYPKEIEEFIQTHPN 52 (94)
Q Consensus 36 ~~v~~~~iE~~l~~~~~ 52 (94)
.+++|.|||..-...|.
T Consensus 18 vrlypdeiealksrvpa 34 (53)
T 2kke_A 18 VRLYPDEIEALKSRVPA 34 (53)
T ss_dssp EEECHHHHHHHHTTCCS
T ss_pred EEeChhHHHHHHhcCCC
Confidence 67999999987766664
No 50
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=59.27 E-value=19 Score=19.29 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=26.1
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 79 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 79 (94)
..+|++.+.++|+|.++-=+-....+....+.+-+++.+.
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~ 51 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGK 51 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCC
Confidence 4668888999999987765544443333456677777654
No 51
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.20 E-value=23 Score=19.91 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=27.9
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHH
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC 91 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 91 (94)
..++.+.+.++|.|.+|..+.- ...+.+.+.. .+.+++.+++
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG-----~~d~~~~v~~-----~d~~~l~~~l 123 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTG-----HYSIFIKVMC-----RSIDALQHVL 123 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESS-----SCSEEEEEEE-----SCHHHHHHHH
T ss_pred HHHHHHHHhCCcCeEEEEEEec-----ccCEEEEEEE-----CCHHHHHHHH
Confidence 4678899999999999987622 2224444443 3556666655
No 52
>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} SCOP: b.61.2.1 PDB: 2rn4_A
Probab=54.09 E-value=14 Score=20.34 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCCeEEcCceEE-EecCCe-EEEEeecCC
Q psy5015 3 GYACGLKQDQFV-LREDGY-GQVVGRIKD 29 (94)
Q Consensus 3 ~~~~~~TGD~~~-~~~~G~-~~~~GR~~d 29 (94)
..+|+-|+|=-. .+.||. +.|..|.++
T Consensus 58 p~~W~ptPdGi~L~~~dGs~l~ff~r~~~ 86 (106)
T 1jiw_I 58 PRAWRPTPAGIALLERGGLTLMLLGRQGE 86 (106)
T ss_dssp CCEEEEETTEEEEECTTSCEEEEEEEEET
T ss_pred CcccccCCCeEEEEcCCCCEEEeeeecCC
Confidence 358999999554 566774 778888877
No 53
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=52.33 E-value=29 Score=20.54 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEE--EEEEEcCCCCCCHH
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG--ISIKLKENAKLNAD 85 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 85 (94)
-.|++..|.++++|..|-|...-.......+. +++.++++..++..
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l~~~ 139 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAPS 139 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGGG
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCCcHh
Confidence 35688999999999998885543222222333 44455666655543
No 54
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=51.18 E-value=24 Score=20.19 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=21.3
Q ss_pred ecCCeEEeCcEEeChHHHHHHHhcCCCe
Q psy5015 26 RIKDMIIRGGENIYPKEIEEFIQTHPNV 53 (94)
Q Consensus 26 R~~d~i~~~G~~v~~~~iE~~l~~~~~v 53 (94)
+..|+|++.-..+++.++.+.+.. |..
T Consensus 5 ~~~d~i~it~e~l~~~~~~~~v~~-p~~ 31 (135)
T 4ap8_A 5 KSKDVINFTAEKLSVDEVSQLVIS-PLC 31 (135)
T ss_dssp CCCEEEEEESSCCCHHHHHHHTCC-TTC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhcC-CCC
Confidence 567899999999999999887644 544
No 55
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=50.99 E-value=24 Score=18.06 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=25.0
Q ss_pred ChHHHHHHHhcC--CCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015 39 YPKEIEEFIQTH--PNVLEAYAYGVPDERMGEEVGISIKLKEN 79 (94)
Q Consensus 39 ~~~~iE~~l~~~--~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 79 (94)
...+|++.+.++ |+|.++-=+-....+....+.+.+++.+.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~ 53 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGD 53 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCC
Confidence 356788888888 99887654433332222345566776554
No 56
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=50.84 E-value=33 Score=19.59 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.8
Q ss_pred hHHHHHHHhcCCCeeeEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~ 59 (94)
..++.+.|.++|.|.+|..+
T Consensus 79 ~~~~~~~l~~~peV~~~~~v 98 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRM 98 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEeeec
Confidence 46788889999999998875
No 57
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=49.57 E-value=24 Score=21.77 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=30.5
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
+|.| ++.++|++.+--+-.. --.|.+++..|.+.|+|-+.-.+.
T Consensus 157 ~R~g---~vTdnGn~IlD~~~~~-------i~~p~~l~~~l~~i~GVve~GlF~ 200 (219)
T 1m0s_A 157 YREG---VVTDNGNVILDVHNFS-------ILNPVEIEKELNNVAGVVTNGIFA 200 (219)
T ss_dssp ECTT---CCCTTSCEEEEEESCC-------CSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eeCc---eEcCCCCEEEEecCCC-------CCCHHHHHHHHhcCCCeeeeccEe
Confidence 4554 5667787654433321 238999999999999998876664
No 58
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=49.02 E-value=12 Score=15.03 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=11.0
Q ss_pred EeChHHHHHHHhcCC
Q psy5015 37 NIYPKEIEEFIQTHP 51 (94)
Q Consensus 37 ~v~~~~iE~~l~~~~ 51 (94)
.++|.+||+.+.+-|
T Consensus 12 mlspddi~qw~s~dp 26 (28)
T 2b3g_B 12 MLSPDDIEQWFTEDP 26 (28)
T ss_dssp GCCHHHHHHHHHC--
T ss_pred hcChHHHHHHhhcCC
Confidence 478999999887755
No 59
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=47.69 E-value=31 Score=21.27 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=30.4
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
+|.| ++.++|++.+--+-.. --.|.+++..|.+.|+|-+.-.+.
T Consensus 156 ~R~g---~vTdnGn~IlD~~~~~-------i~~p~~l~~~l~~i~GVve~GlF~ 199 (219)
T 1o8b_A 156 YRQG---VVTDNGNVILDVHGME-------ILDPIAMENAINAIPGVVTVGLFA 199 (219)
T ss_dssp ECTT---CCCTTSCEEEEEESCC-------BSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eeCc---eEeCCCCEEEEeeCCC-------CCCHHHHHHHHhcCCCcceeeeEe
Confidence 4544 6677787654433321 237999999999999998876664
No 60
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=45.75 E-value=26 Score=18.12 Aligned_cols=21 Identities=5% Similarity=0.156 Sum_probs=16.1
Q ss_pred eEEeCcEEeChHHHHHHHhcC
Q psy5015 30 MIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 30 ~i~~~G~~v~~~~iE~~l~~~ 50 (94)
.+-++|..+.+.+++..|.+.
T Consensus 31 ~i~~~~~~v~~~~L~~~l~~~ 51 (99)
T 2pfu_A 31 SMFIGNDPVTDETMITALNAL 51 (99)
T ss_dssp EEEETTEEECSSSHHHHHHHH
T ss_pred CEEECCEecCHHHHHHHHHHH
Confidence 344578889999999888764
No 61
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=45.23 E-value=42 Score=21.07 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 79 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 79 (94)
...+|++.+.++|+|.+..=+-....+....+.+.+++.++
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~ 247 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDS 247 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTT
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCC
Confidence 34678888888998876543333322222345566666554
No 62
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=45.00 E-value=35 Score=21.44 Aligned_cols=48 Identities=10% Similarity=-0.090 Sum_probs=31.4
Q ss_pred EEc-CceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 7 GLK-QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 7 ~~T-GD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
+|+ ++-.++.++|++.+--+-..- --.|.+++..|.+.|+|-+.-.+.
T Consensus 173 lR~~~~~p~vTDnGn~IlD~~f~~~------i~dp~~l~~~l~~i~GVVe~GlF~ 221 (244)
T 2f8m_A 173 IRKRNGEIFITDNKNYIVDFFFTEP------IQDLLETCTRIKMTTGVVDHGIFV 221 (244)
T ss_dssp ECEETTEECCCTTSCEEEEEECSSC------CSSHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEcCCCcEEcCCCCEEEEecCCCC------CCCHHHHHHHHhcCCCcceeeeEe
Confidence 554 344466777876554333221 138999999999999998765553
No 63
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=44.80 E-value=17 Score=21.71 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=26.5
Q ss_pred ceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 11 D~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
-...+|++|.+.+.|+.++.-......+...++++.|.++
T Consensus 146 ~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 146 DFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp EEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred eEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 3456788888888888776522233356678888877663
No 64
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=43.87 E-value=38 Score=18.33 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred EEeCcEEeChHHHHHHHhcCCCeee
Q psy5015 31 IIRGGENIYPKEIEEFIQTHPNVLE 55 (94)
Q Consensus 31 i~~~G~~v~~~~iE~~l~~~~~v~~ 55 (94)
|.+.|.++...+|+++|....++..
T Consensus 53 ItIEG~dIdfd~I~~~IE~~GgvIH 77 (100)
T 3bpd_A 53 ITILGNNLDYEQIKGVIEDMGGVIH 77 (100)
T ss_dssp EEEEEEEECHHHHHHHHHTTTCEEE
T ss_pred EEEEecCCCHHHHHHHHHHcCCeEE
Confidence 4478999999999999999987643
No 65
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=40.87 E-value=40 Score=20.89 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=27.7
Q ss_pred EEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 14 ~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
.+.++|++.+--+-. .--.|.+++..|.+.|+|-+.-.+.
T Consensus 166 ~vTDnGn~IlD~~~~-------~i~dp~~l~~~l~~i~GVVe~GlF~ 205 (224)
T 3kwm_A 166 TITDNGNVILDVYNL-------KIDNPLKLETELNQITGVVTNGIFA 205 (224)
T ss_dssp CCCTTSCEEEEEESC-------CBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred cCccCCCEEEEcCCC-------CCCCHHHHHHHHcCCCCEeeeCccc
Confidence 456677765543322 1237999999999999998765553
No 66
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=40.49 E-value=33 Score=18.42 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.0
Q ss_pred EcCceEEEecC-CeEEEEeecC
Q psy5015 8 LKQDQFVLRED-GYGQVVGRIK 28 (94)
Q Consensus 8 ~TGD~~~~~~~-G~~~~~GR~~ 28 (94)
..||..+++.+ |.+.-+||.+
T Consensus 64 ~~GDVI~Id~~sG~V~klGRs~ 85 (95)
T 2cqa_A 64 QAGDVITIDKATGKISKLGRSF 85 (95)
T ss_dssp CTTSEEEEETTTTEEEEEECCC
T ss_pred eeCCEEEEEccCCEEEEEEEee
Confidence 56999999875 9999999985
No 67
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=39.47 E-value=25 Score=21.14 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=21.1
Q ss_pred EeChHHHHHHHh-cCCCeeeEEEEE
Q psy5015 37 NIYPKEIEEFIQ-THPNVLEAYAYG 60 (94)
Q Consensus 37 ~v~~~~iE~~l~-~~~~v~~~~v~~ 60 (94)
.+++..+++.|. ++|.|.++.|.-
T Consensus 33 ~vd~~~i~~~l~~~~P~V~~a~V~r 57 (220)
T 2vh1_A 33 TQDVNIIQTQIEQRLPWIKQVSVRK 57 (220)
T ss_dssp GSCHHHHHHHHHHHCTTEEEEEEEE
T ss_pred EECHHHHHHHHHhcCCCEEEEEEEE
Confidence 578999999999 999999988863
No 68
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=39.10 E-value=10 Score=20.73 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=12.4
Q ss_pred ChHHHHHHHhc---CCCeeeEEEE
Q psy5015 39 YPKEIEEFIQT---HPNVLEAYAY 59 (94)
Q Consensus 39 ~~~~iE~~l~~---~~~v~~~~v~ 59 (94)
++.+||+.|.+ +|+|....++
T Consensus 10 ~~~evEe~l~RI~~~kgV~G~iIl 33 (106)
T 2hz5_A 10 SMAEVEETLKRLQSQKGVQGIIVV 33 (106)
T ss_dssp -----CHHHHHHHTSTTEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEE
Confidence 56677776655 6999888877
No 69
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=37.21 E-value=32 Score=15.57 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=18.8
Q ss_pred EeCcEEe--ChHHHHHHHhcCCCeeeEEE
Q psy5015 32 IRGGENI--YPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 32 ~~~G~~v--~~~~iE~~l~~~~~v~~~~v 58 (94)
++.|..- ....||..|.+.++|..+.+
T Consensus 8 ~v~gm~C~~C~~~i~~~l~~~~gv~~~~v 36 (71)
T 2xmw_A 8 QLEGMRCAACASSIERAIAKVPGVQSCQV 36 (71)
T ss_dssp EEECCCSHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EECCcccHHHHHHHHHHHhcCCCeEEEEE
Confidence 3444433 24679999999999987655
No 70
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=36.89 E-value=55 Score=18.12 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.2
Q ss_pred hHHHHHHHhcCCCeeeEEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~ 60 (94)
..++.+.+.++|.|.+|..+.
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t 98 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA 98 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE
T ss_pred HHHHHHHHhcChhhheeeeee
Confidence 457788888999999998764
No 71
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=36.79 E-value=11 Score=22.06 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=20.1
Q ss_pred EcCceE--EEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015 8 LKQDQF--VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 8 ~TGD~~--~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
+.||+. +++.||.+++. |..|.+ .+-..+.++
T Consensus 20 ~cgd~dli~I~~dG~W~y~----------G~pI~r-~lVrLFssi 53 (150)
T 2ra9_A 20 LCSEVPLFDINALGDWTYL----------GTSLPA-KFAKLFASI 53 (150)
T ss_dssp --CCCCSEEECTTSCEEET----------TEECCH-HHHHHHHTT
T ss_pred CccCcCceEECCCCcEEEC----------CccccH-HHHHHHHHh
Confidence 457754 88999998875 455665 566665553
No 72
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.68 E-value=58 Score=18.38 Aligned_cols=42 Identities=12% Similarity=0.255 Sum_probs=26.5
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHH
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC 91 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 91 (94)
..++.+.+.++|.|.+|..+.-+ ....+.+.. .+.+++.+++
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~-----~d~~~~v~~-----~d~~~l~~~l 126 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGE-----TDYLLQAFF-----TDMNAFSHFV 126 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSS-----CSEEEEEEE-----SSHHHHHHHH
T ss_pred HHHHHHHHhcChhhhEeeeecCC-----CCEEEEEEE-----CCHHHHHHHH
Confidence 56778888899999998875321 124444443 3555666555
No 73
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=36.59 E-value=39 Score=16.29 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=20.9
Q ss_pred EEEecCCeEEEEeecCCeEEeCc---EEeChHHHHHHHhcC
Q psy5015 13 FVLREDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTH 50 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~ 50 (94)
..++.+|.+++- ..| ..+++.+++..|.+.
T Consensus 7 v~I~~dG~~~~~--------~~~~~~~~v~~~~L~~~l~~~ 39 (74)
T 2jwk_A 7 LEVAGIGKYAIS--------IGGERQEGLTEEMVTQLSRQE 39 (74)
T ss_dssp EEECSSSCEEEE--------ETTEEEEEECHHHHHHHHHHH
T ss_pred EEEecCccEEEe--------cCCCcCcccCHHHHHHHHHHH
Confidence 456777776653 125 789999999888653
No 74
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.56 E-value=6.6 Score=21.29 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=17.9
Q ss_pred CCeEEeCcEEe----ChHHHHHHHhcC
Q psy5015 28 KDMIIRGGENI----YPKEIEEFIQTH 50 (94)
Q Consensus 28 ~d~i~~~G~~v----~~~~iE~~l~~~ 50 (94)
+|+||-+|+++ +|.++.+.+..+
T Consensus 19 kdiikkngfkvrtvrspqelkdsieel 45 (134)
T 2l69_A 19 KDIIKKNGFKVRTVRSPQELKDSIEEL 45 (134)
T ss_dssp HHHHHHTTCEEEEECSHHHHHHHHHHH
T ss_pred HHHHHhcCceEEEecCHHHHHHHHHHH
Confidence 67888888876 788888877764
No 75
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=36.41 E-value=43 Score=16.83 Aligned_cols=25 Identities=4% Similarity=0.207 Sum_probs=19.7
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcCCC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTHPN 52 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~~~ 52 (94)
|.++.++|..+ +..++.+.|...++
T Consensus 48 D~I~~Ing~~v~~~~~~~~~~~l~~~~~ 75 (88)
T 1kwa_A 48 DEIREINGISVANQTVEQLQKMLREMRG 75 (88)
T ss_dssp CEEEEETTEEGGGSCHHHHHHHHHHCCE
T ss_pred CEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence 44555999999 58899999988765
No 76
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=35.81 E-value=50 Score=17.37 Aligned_cols=26 Identities=19% Similarity=-0.009 Sum_probs=18.5
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCC
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDER 65 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~ 65 (94)
..+|+++|.+.|+|.++-|....++.
T Consensus 62 ~~~i~~al~~l~gv~~v~V~l~~~p~ 87 (103)
T 1uwd_A 62 LSDAEEAIKKIEGVNNVEVELTFDPP 87 (103)
T ss_dssp HHHHHHHHHTSSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhCCCcceEEEEEecCCC
Confidence 35788888889999887665444443
No 77
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=35.41 E-value=51 Score=17.36 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=19.6
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCC
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERM 66 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~ 66 (94)
..+|++.|.+.|+|.++-|-...++.+
T Consensus 61 ~~~i~~al~~l~gv~~V~V~l~~~p~W 87 (103)
T 3cq1_A 61 GEAVRQALSRLPGVEEVEVEVTFEPPW 87 (103)
T ss_dssp HHHHHHHHHTSTTCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhCCCceeEEEEEecCCCC
Confidence 467899999899998876665544433
No 78
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=35.19 E-value=45 Score=16.62 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=18.9
Q ss_pred EeCcEEeC--hHHHHHHHhcCCCeeeEEE
Q psy5015 32 IRGGENIY--PKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 32 ~~~G~~v~--~~~iE~~l~~~~~v~~~~v 58 (94)
++.|.... ...||..|.+.++|..+.+
T Consensus 8 ~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v 36 (90)
T 2g9o_A 8 IIDGMHCKSCVSNIESTLSALQYVSSIVV 36 (90)
T ss_dssp EEESCCHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred EECCcCCHHHHHHHHHHHHcCCCeeEEEE
Confidence 34444332 3679999999999987665
No 79
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=35.14 E-value=47 Score=19.43 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.9
Q ss_pred CeEEcCceEEEecCCeEEEEee
Q psy5015 5 ACGLKQDQFVLREDGYGQVVGR 26 (94)
Q Consensus 5 ~~~~TGD~~~~~~~G~~~~~GR 26 (94)
-|..+.|.|.+..+..+.+.|-
T Consensus 77 ~w~i~A~~a~~~~~~~v~L~gn 98 (175)
T 3my2_A 77 TWSVKADKAKLTNDRMLYLYGH 98 (175)
T ss_dssp EEEEECSEEEECTTSEEEEEEE
T ss_pred eEEEEeCeEEECCCCEEEEECC
Confidence 4999999999988877777764
No 80
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.92 E-value=67 Score=18.56 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.1
Q ss_pred hHHHHHHHhcCCCeeeEEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~ 59 (94)
..++.+.|.++|.|.+|..+
T Consensus 100 ~~~v~~~l~~~peV~~~~~v 119 (171)
T 2e1c_A 100 YSEVASNLAKYPEIVEVYET 119 (171)
T ss_dssp HHHHHHHHHTSTTEEEEEEC
T ss_pred HHHHHHHHhcCcCeEEEEEe
Confidence 47888899999999998875
No 81
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=34.86 E-value=34 Score=15.49 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=26.5
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
...||..|.+.|+|..+.+-. ..+. +.+ + ...+.+++.+.+.+
T Consensus 15 ~~~i~~~l~~~~gv~~~~v~~----~~~~---~~v---~-~~~~~~~i~~~i~~ 57 (66)
T 2roe_A 15 VMAVTKALKKVPGVEKVEVSL----EKGE---ALV---E-GTADPKALVQAVEE 57 (66)
T ss_dssp HHHHHHHHHTSTTCCCEEECS----SSCB---EEE---C-SCCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeEEEEEEe----CCCE---EEE---C-CCCCHHHHHHHHHH
Confidence 467899999999998765521 1121 222 2 24677777776653
No 82
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=34.75 E-value=14 Score=13.89 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=5.0
Q ss_pred CeEEcCce
Q psy5015 5 ACGLKQDQ 12 (94)
Q Consensus 5 ~~~~TGD~ 12 (94)
-||.||++
T Consensus 14 ~fy~t~~I 21 (23)
T 3uji_P 14 AFYTTKNI 21 (26)
T ss_pred eEEecccc
Confidence 36677764
No 83
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=34.64 E-value=44 Score=17.31 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=18.5
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcCCC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTHPN 52 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~~~ 52 (94)
|-++.++|.++ +..++.+.|...++
T Consensus 70 D~I~~vng~~v~~~~~~~~~~~l~~~~~ 97 (104)
T 2z17_A 70 DVLANINGVSTEGFTYKQVVDLIRSSGN 97 (104)
T ss_dssp CBCCEETTEECTTCCHHHHHHHHHHTTT
T ss_pred CEEEEECCEEcCCCCHHHHHHHHHhCCC
Confidence 44556999999 56788888877654
No 84
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=34.26 E-value=37 Score=15.37 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=27.0
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
...||..|.+.|+|..+.+-.. .+ .+.+...+. .+.+++.+.+.
T Consensus 15 ~~~i~~~l~~~~gv~~~~v~~~----~~---~~~v~~~~~--~~~~~i~~~i~ 58 (69)
T 2kt2_A 15 AAHVKEALEKVPGVQSALVSYP----KG---TAQLAIVPG--TSPDALTAAVA 58 (69)
T ss_dssp HHHHHHHHHHSTTEEEEEEETT----TT---EEEEEECTT--SCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeEEEEEcc----CC---EEEEEECCC--CCHHHHHHHHH
Confidence 4779999999999987655311 11 123333332 46677777664
No 85
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=34.16 E-value=15 Score=13.84 Aligned_cols=8 Identities=13% Similarity=-0.188 Sum_probs=5.0
Q ss_pred CeEEcCce
Q psy5015 5 ACGLKQDQ 12 (94)
Q Consensus 5 ~~~~TGD~ 12 (94)
-||.||++
T Consensus 14 ~fy~t~~i 21 (23)
T 3mly_P 14 AFYATNGI 21 (26)
T ss_pred eEEecccc
Confidence 36677764
No 86
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=33.91 E-value=68 Score=19.79 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=27.9
Q ss_pred EEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 14 ~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
++.++|++.+--+-.. --.|.+++..|.+.|+|-+.-.+.
T Consensus 169 ~vTdnGn~ilD~~~~~-------i~~~~~l~~~l~~i~GVve~GlF~ 208 (227)
T 1uj6_A 169 YFTDGGHLIADCRFGP-------IGDPLGLHRALLEIPGVVETGLFV 208 (227)
T ss_dssp CCCTTSCEEEEECCCS-------CSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEcCCCCEEEEeeCCC-------CCCHHHHHHHHhCCCCcceeccEe
Confidence 5666777654333321 238999999999999998765553
No 87
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=33.54 E-value=64 Score=17.95 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.4
Q ss_pred ChHHHHHHHhcCCCeeeEEEE
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~ 59 (94)
...++.+.+.++|.|.+|..+
T Consensus 79 ~~~~~~~~l~~~p~V~~~~~~ 99 (151)
T 2cyy_A 79 KYSEVASNLAKYPEIVEVYET 99 (151)
T ss_dssp CHHHHHHHHHTCTTEEEEEEC
T ss_pred cHHHHHHHHhcCCCeeEeeEe
Confidence 347788899999999998875
No 88
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=33.28 E-value=7.8 Score=19.37 Aligned_cols=17 Identities=6% Similarity=-0.068 Sum_probs=12.1
Q ss_pred eEEcCceEEEecCCeEE
Q psy5015 6 CGLKQDQFVLREDGYGQ 22 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~ 22 (94)
||.+||...-..+|..+
T Consensus 1 ~~~~g~~~~C~~eGe~~ 17 (67)
T 3bk3_C 1 WLITGTEASCENEGEVL 17 (67)
T ss_dssp CCSCCEECBCSSTTCEE
T ss_pred CceecCCCceEECCEEE
Confidence 77788877666677655
No 89
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=32.88 E-value=51 Score=16.56 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=18.8
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcCCC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTHPN 52 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~~~ 52 (94)
|.++.++|..+ +..++.+.+.+.++
T Consensus 44 D~Il~ing~~v~~~~~~~~~~~i~~~~~ 71 (88)
T 3e17_A 44 DIILKINGTVTENMSLTDARKLIEKSRG 71 (88)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHTTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 45556999998 67778888877655
No 90
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=32.77 E-value=24 Score=21.93 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=20.3
Q ss_pred EeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 37 NIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 37 ~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
.+++.++++.|.++|.|.++.|.-
T Consensus 60 ~vd~~~i~~~l~~~PwV~~a~V~r 83 (255)
T 2vh2_A 60 TQDVNIIQQQIERLPWIQQASVRK 83 (255)
T ss_dssp SCHHHHHHHHTSCCSSEEEEEEEE
T ss_pred EEcHHHHHHHHHcCCCeeEEEEEE
Confidence 477889999999999999988754
No 91
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=32.75 E-value=28 Score=19.87 Aligned_cols=18 Identities=6% Similarity=-0.413 Sum_probs=14.5
Q ss_pred EEcCceEEEecCCeEEEE
Q psy5015 7 GLKQDQFVLREDGYGQVV 24 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~ 24 (94)
+..||++++-+.|.|.|.
T Consensus 73 ~~~GDIaYw~pgg~LaIF 90 (136)
T 1zx8_A 73 VEIGDVGYWPPGKALCLF 90 (136)
T ss_dssp BCTTEEEEEGGGTEEEEE
T ss_pred CCCCcEEEeCCCCEEEEE
Confidence 567999999998887644
No 92
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.64 E-value=53 Score=16.72 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=17.5
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTH 50 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~ 50 (94)
|-++.++|..+ +..++.+.+.+.
T Consensus 53 D~Il~Ing~~v~~~~~~~~~~~l~~~ 78 (90)
T 1y7n_A 53 HRIIEINGQSVVATPHEKIVHILSNA 78 (90)
T ss_dssp CEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44555999999 688888888753
No 93
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.50 E-value=67 Score=17.81 Aligned_cols=20 Identities=10% Similarity=-0.168 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCeeeEEEEE
Q psy5015 41 KEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 41 ~~iE~~l~~~~~v~~~~v~~ 60 (94)
.++.+.+.++|.|.+|..+.
T Consensus 83 ~~~~~~l~~~peV~~~~~vt 102 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGV 102 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEeEec
Confidence 46777888899999998763
No 94
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=32.04 E-value=45 Score=15.65 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=26.2
Q ss_pred hHHHHHHHhcCC-CeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 40 PKEIEEFIQTHP-NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 40 ~~~iE~~l~~~~-~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
...||..|.+.+ +|..+.+-. ..+. +.|.. ..+.+++.+.+++
T Consensus 19 ~~~ie~~l~~~~~GV~~~~v~~----~~~~---~~v~~----~~~~~~i~~~i~~ 62 (73)
T 1cc8_A 19 SGAVNKVLTKLEPDVSKIDISL----EKQL---VDVYT----TLPYDFILEKIKK 62 (73)
T ss_dssp HHHHHHHHHTTTTSEEEEEEET----TTTE---EEEEE----SSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCceEEEEEC----CCCE---EEEEE----eCCHHHHHHHHHH
Confidence 367899999999 998765531 1221 22222 2567777777653
No 95
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=31.75 E-value=87 Score=19.38 Aligned_cols=43 Identities=7% Similarity=-0.028 Sum_probs=29.2
Q ss_pred ceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 11 D~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
|-.++.++|++.+--+-. .--.|.+++..|.+.|+|-+.-.+.
T Consensus 162 ~~p~vTDnGn~IlD~~f~-------~i~~p~~l~~~l~~i~GVVe~GlF~ 204 (225)
T 3l7o_A 162 GVRFVTDMKNFIIDLDLG-------SIPDPIAFGNMLDHQVGVVEHGLFN 204 (225)
T ss_dssp TEECCCTTSCEEEEECCS-------CCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCcEEcCCCCEEEEecCC-------CCCCHHHHHHHHhcCCCeeeeeeec
Confidence 444566677765543322 2247999999999999998765553
No 96
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=31.69 E-value=50 Score=17.22 Aligned_cols=23 Identities=9% Similarity=0.330 Sum_probs=18.0
Q ss_pred CCeEEeCcEEeC---hHHHHHHHhcC
Q psy5015 28 KDMIIRGGENIY---PKEIEEFIQTH 50 (94)
Q Consensus 28 ~d~i~~~G~~v~---~~~iE~~l~~~ 50 (94)
|-++.++|..+. ..++.+.+...
T Consensus 59 D~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 59 DEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 444559999998 79999988764
No 97
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=31.63 E-value=55 Score=22.11 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCCCCeEEcCc---eEEEecCCeEEEEeecCCeEEeCcEEeC
Q psy5015 1 MDGYACGLKQD---QFVLREDGYGQVVGRIKDMIIRGGENIY 39 (94)
Q Consensus 1 ~~~~~~~~TGD---~~~~~~~G~~~~~GR~~d~i~~~G~~v~ 39 (94)
++++|||..-| --++..+|.|.+ .....++...|.+|.
T Consensus 76 I~G~GFF~V~~~~G~~~YTR~G~F~~-D~~G~LV~~~G~~v~ 116 (402)
T 3a69_A 76 ISQNGFFRLVDSNGSVFYSRNGQFKL-DENRNLVNMQGMQLT 116 (402)
T ss_dssp CSSSCEEEEECTTCCEEEESCCEEEE-CTTSCEECTTCCEEE
T ss_pred EcCCcEEEEEcCCCCEEEEeceeEEE-CCCCCEEcCCCCEee
Confidence 36789987632 235667777764 344445555565554
No 98
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=31.50 E-value=40 Score=14.93 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=26.2
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
...||..|.+.++|..+.+- ...+. +.+...+. .+.+++.+.+.
T Consensus 16 ~~~i~~~l~~~~gv~~~~v~----~~~~~---~~v~~~~~--~~~~~i~~~i~ 59 (66)
T 1yg0_A 16 VDKIEKFVGEIEGVSFIDVS----VEKKS---VVVEFDAP--ATQDLIKEALL 59 (66)
T ss_dssp HHHHHHHHTTSSSEEEEEEE----TTTTE---EEEEECTT--CCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEE----cCCCE---EEEEECCC--CCHHHHHHHHH
Confidence 47799999999999876552 11221 23333332 36667766654
No 99
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=31.31 E-value=10 Score=21.63 Aligned_cols=7 Identities=14% Similarity=-0.093 Sum_probs=5.9
Q ss_pred CeEEcCc
Q psy5015 5 ACGLKQD 11 (94)
Q Consensus 5 ~~~~TGD 11 (94)
|||.||.
T Consensus 90 GWY~s~~ 96 (141)
T 4e0q_A 90 GWYTTGD 96 (141)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 8999975
No 100
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=31.02 E-value=57 Score=18.67 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=25.7
Q ss_pred EEEecCCeEEEEeec------CCeEEeCcEEeChHHHHHHHhcC
Q psy5015 13 FVLREDGYGQVVGRI------KDMIIRGGENIYPKEIEEFIQTH 50 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~------~d~i~~~G~~v~~~~iE~~l~~~ 50 (94)
..+|.+|.|.+..+. ..+...+..+++..+|+.++...
T Consensus 87 f~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a 130 (151)
T 3dqg_A 87 FDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEA 130 (151)
T ss_dssp EEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHH
T ss_pred EEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHH
Confidence 456888988776543 33333444688999999988653
No 101
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.37 E-value=13 Score=24.35 Aligned_cols=7 Identities=0% Similarity=-0.377 Sum_probs=6.0
Q ss_pred CeEEcCc
Q psy5015 5 ACGLKQD 11 (94)
Q Consensus 5 ~~~~TGD 11 (94)
|||.||.
T Consensus 91 GWY~tg~ 97 (338)
T 4b4t_U 91 GWYHSGP 97 (338)
T ss_dssp EEEECCS
T ss_pred EEEecCC
Confidence 8999985
No 102
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=28.84 E-value=50 Score=15.21 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=19.0
Q ss_pred EeCcEEe--ChHHHHHHHhcCCCeeeEEE
Q psy5015 32 IRGGENI--YPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 32 ~~~G~~v--~~~~iE~~l~~~~~v~~~~v 58 (94)
++.|..- ....||..|.+.++|..+.+
T Consensus 8 ~v~gm~C~~C~~~ie~~l~~~~gV~~~~v 36 (73)
T 1mwy_A 8 KVSGMDCAACARKVENAVRQLAGVNQVQV 36 (73)
T ss_dssp EEESCCSTTHHHHHHHHHHTSSSEEEEEE
T ss_pred EECCcCCHHHHHHHHHHHhcCCCeeEEEE
Confidence 3444433 23679999999999987655
No 103
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.58 E-value=49 Score=15.62 Aligned_cols=19 Identities=0% Similarity=0.004 Sum_probs=15.7
Q ss_pred ChHHHHHHHhcCCCeeeEEE
Q psy5015 39 YPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v 58 (94)
-...||..|.+ |+|..+.+
T Consensus 19 C~~~ie~~l~~-~gv~~~~v 37 (73)
T 3fry_A 19 CVARVKKALEE-AGAKVEKV 37 (73)
T ss_dssp GHHHHHHHHHH-TTCEEEEE
T ss_pred HHHHHHHHhcc-CCcEEEEE
Confidence 46789999999 99987665
No 104
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=28.13 E-value=64 Score=16.20 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcCCC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTHPN 52 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~~~ 52 (94)
|.++.++|..+ +..++...|...++
T Consensus 51 D~I~~ing~~v~~~~~~~~~~~l~~~~~ 78 (93)
T 3o46_A 51 DELREVNGIPVEDKRPEEIIQILAQSQG 78 (93)
T ss_dssp CEEEEETTEESTTSCHHHHHHHHHHCCE
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 45556999999 67788888877653
No 105
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=28.12 E-value=49 Score=17.71 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=13.8
Q ss_pred EEEEEcCCCC---CCHHHHHHHHhc
Q psy5015 72 ISIKLKENAK---LNADDIRTFCKG 93 (94)
Q Consensus 72 ~~v~~~~~~~---~~~~~l~~~l~~ 93 (94)
.+|++.++.. .+.+++..+|+.
T Consensus 11 ~yVvLEp~~~EqfLT~~Ell~~Lk~ 35 (94)
T 2krx_A 11 NFVVLETNQPEQFLTTIELLEKLKG 35 (94)
T ss_dssp CEEEEESSSCSEEECHHHHHHHHHH
T ss_pred CEEEecCCCCcccCCHHHHHHHHHH
Confidence 4566666542 577787777753
No 106
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=27.65 E-value=1.2e+02 Score=21.47 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.6
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 48 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~ 48 (94)
..-||..++ +.|.++.+-...|.|-++|.-++...++..+.
T Consensus 370 l~pGEtlfI-PsGW~HaV~tleDSIaiggNFl~~~nl~~qlr 410 (528)
T 3pur_A 370 IKEGQTLLI-PAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMR 410 (528)
T ss_dssp EETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCGGGHHHHHH
T ss_pred ECCCCEEEe-cCCceEEEecCCCeEEEcCcccchhhHHHHHH
Confidence 467888888 68999999899999999999999998888776
No 107
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=27.04 E-value=81 Score=17.02 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=27.4
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
...||..|.+.|+|..+.+-.. .+ .+.|...++ ..+.++|.+.+.
T Consensus 89 ~~~ie~~l~~~~gv~~~~v~~~----~~---~~~v~~~~~-~~~~~~i~~~i~ 133 (151)
T 1p6t_A 89 ANRIEKRLNKIEGVANAPVNFA----LE---TVTVEYNPK-EASVSDLKEAVD 133 (151)
T ss_dssp HHHHHHHHTTSSSEEECCEETT----TT---EEEEEECTT-TCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEcc----CC---EEEEEECCC-CCCHHHHHHHHH
Confidence 4779999999999977654311 11 233444433 356677776654
No 108
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=26.89 E-value=54 Score=15.01 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=19.0
Q ss_pred EeCcEEe--ChHHHHHHHhcCCCeeeEEE
Q psy5015 32 IRGGENI--YPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 32 ~~~G~~v--~~~~iE~~l~~~~~v~~~~v 58 (94)
++.|..- ....||..|...++|..+.+
T Consensus 8 ~v~gm~C~~C~~~ie~~l~~~~gv~~~~v 36 (71)
T 2aj0_A 8 RVDGLSCTNCAAKFERNVKEIEGVTEAIV 36 (71)
T ss_dssp EEESCCCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred EECCcccHHHHHHHHHHHHcCCCeEEEEE
Confidence 3444433 34779999999999977655
No 109
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=26.22 E-value=1.1e+02 Score=19.45 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=28.2
Q ss_pred EEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEE
Q psy5015 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 14 ~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 60 (94)
++.++|++.+--+-.. --.|.+++..|...|+|-+.-.+.
T Consensus 199 ~vTDnGN~IlD~~f~~-------i~dp~~l~~~l~~i~GVVe~GlF~ 238 (264)
T 1xtz_A 199 VVTDNNNFIIDADFGE-------ISDPRKLHREIKLLVGVVETGLFI 238 (264)
T ss_dssp CCCTTSCEEEEEECSS-------BSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEcCCCCEEEEeeCCC-------CCCHHHHHHHHhcCCCccccceEe
Confidence 5666787655434333 137999999999999998765553
No 110
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=25.94 E-value=75 Score=16.30 Aligned_cols=23 Identities=4% Similarity=0.096 Sum_probs=18.0
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTH 50 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~ 50 (94)
|.++.++|..+ +..++.+.|...
T Consensus 60 D~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 60 DRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp CEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhC
Confidence 44555999999 778888888775
No 111
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=25.79 E-value=73 Score=16.11 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=18.9
Q ss_pred ecCC-eEEeCcEEeCh---HHHHHHHhcCCC
Q psy5015 26 RIKD-MIIRGGENIYP---KEIEEFIQTHPN 52 (94)
Q Consensus 26 R~~d-~i~~~G~~v~~---~~iE~~l~~~~~ 52 (94)
|..| ++.++|..+.- .++.+.+...++
T Consensus 52 ~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 82 (98)
T 2jxo_A 52 RAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (98)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3344 44599999974 788888877643
No 112
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=25.69 E-value=91 Score=17.17 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.0
Q ss_pred ChHHHHHHHhcCCCeeeEEEE
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAY 59 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~ 59 (94)
...++.+.+.++|.|.+|..+
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~ 97 (150)
T 2pn6_A 77 YHVELGNKLAQIPGVWGVYFV 97 (150)
T ss_dssp HHHHHHHHHHTSTTEEEEEEC
T ss_pred HHHHHHHHHhcCchhhhhhhh
Confidence 357788889999999998764
No 113
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=25.36 E-value=43 Score=15.58 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
...||..|.+.++| .+.+- .. .+ . +.|.. ..+.++|.+.+++
T Consensus 16 ~~~i~~~l~~~~gV-~v~v~-~~---~~-~--~~v~~----~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 16 AEAVSRVLNKLGGV-KYDID-LP---NK-K--VCIES----EHSMDTLLATLKK 57 (68)
T ss_dssp HHHHHHHHHHHCSE-EEEEE-TT---TT-E--EEEEE----SSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCe-EEEEE-cC---CC-E--EEEEe----cCCHHHHHHHHHH
Confidence 46789999999999 54432 21 11 1 22322 3577788877754
No 114
>3mlz_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 2.99A {Human immunodeficiency virus 1}
Probab=25.36 E-value=19 Score=13.84 Aligned_cols=8 Identities=13% Similarity=-0.226 Sum_probs=5.1
Q ss_pred CeEEcCce
Q psy5015 5 ACGLKQDQ 12 (94)
Q Consensus 5 ~~~~TGD~ 12 (94)
-||.||++
T Consensus 15 ~fy~t~~i 22 (25)
T 3mlz_P 15 AFYATGQI 22 (26)
T ss_dssp CCCCCCCS
T ss_pred eEEEccce
Confidence 46777764
No 115
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=25.24 E-value=42 Score=14.73 Aligned_cols=19 Identities=5% Similarity=0.087 Sum_probs=15.3
Q ss_pred hHHHHHHHhcCCCeeeEEE
Q psy5015 40 PKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v 58 (94)
...||..|.+.++|..+.+
T Consensus 16 ~~~i~~~l~~~~gv~~~~v 34 (64)
T 2xmm_A 16 AEAVTKAVQNEDAQATVQV 34 (64)
T ss_dssp HHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 4678999999999987554
No 116
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=75 Score=16.00 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=18.0
Q ss_pred CCeEEeCcEEe--ChHHHHHHHhcCC
Q psy5015 28 KDMIIRGGENI--YPKEIEEFIQTHP 51 (94)
Q Consensus 28 ~d~i~~~G~~v--~~~~iE~~l~~~~ 51 (94)
|-++.++|..+ +..++.+.|....
T Consensus 52 D~I~~ing~~v~~~~~~~~~~l~~~~ 77 (91)
T 2e7k_A 52 DIIKEVNGQPVGSDPRALQELLRNAS 77 (91)
T ss_dssp CEEEEETTEECTTCHHHHHHHHHTCC
T ss_pred CEEEEECCEECCCCHHHHHHHHHcCC
Confidence 44555999999 7788888887643
No 117
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=25.08 E-value=88 Score=16.82 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=37.7
Q ss_pred EEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015 36 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 93 (94)
Q Consensus 36 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~ 93 (94)
+.-+..++-..|.++++|..+-+....-...-+.+...+ ++..++.+++++.+.+
T Consensus 17 h~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkiti---EG~~id~d~I~~~IE~ 71 (97)
T 2raq_A 17 HEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTI---QGNDLDFDEITRAIES 71 (97)
T ss_dssp SCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEE---ECSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEE---EecCCCHHHHHHHHHH
Confidence 456677888999999999887766555443333344333 3567888998887764
No 118
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=24.96 E-value=58 Score=14.69 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=28.9
Q ss_pred EEeCcEEe--ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 31 IIRGGENI--YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 31 i~~~G~~v--~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
+++.|..- ....||..+.+.++|..+.+- ...+ . +.+... ...+.+++.+.+.
T Consensus 6 ~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~----~~~~-~--~~v~~~--~~~~~~~i~~~i~ 60 (72)
T 1fvq_A 6 LAVHGMTCSACTNTINTQLRALKGVTKCDIS----LVTN-E--CQVTYD--NEVTADSIKEIIE 60 (72)
T ss_dssp EEECSCCSHHHHHHHHHHHHTSSSEEEECCB----TTTT-E--EEEEEC--TTSCHHHHHHHHH
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeEEEEEE----ecCC-E--EEEEEC--CCCCHHHHHHHHH
Confidence 34445433 236789999999999765431 1122 1 223332 3456666666554
No 119
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.91 E-value=91 Score=16.89 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=26.1
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHH
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC 91 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 91 (94)
...++.+.+.++|.|.+|..+. +.....+.+.. .+.+++.+++
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~~-----G~~d~~~~v~~-----~d~~~l~~~~ 118 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLSS-----GDHMIMAVIWA-----KDGEDLAEII 118 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCCS-----SSSSEEEEEEE-----SSHHHHHHHH
T ss_pred hHHHHHHHHhcCCCeEEEEEec-----CCCCEEEEEEE-----CCHHHHHHHH
Confidence 3567778888899999886541 11224444443 3556666655
No 120
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.77 E-value=1.1e+02 Score=17.65 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=15.8
Q ss_pred ChHHHHHHHhcCCCeeeEE
Q psy5015 39 YPKEIEEFIQTHPNVLEAY 57 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~ 57 (94)
...++.+.+.++|.|.+|.
T Consensus 96 ~~~~~~~~l~~~peV~~~~ 114 (171)
T 2ia0_A 96 YISYISSTLSALPGVLFVA 114 (171)
T ss_dssp HHHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEE
Confidence 3467788888999999998
No 121
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=24.72 E-value=71 Score=15.61 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=17.5
Q ss_pred CCeEEeCcEEeC---hHHHHHHHhcCC
Q psy5015 28 KDMIIRGGENIY---PKEIEEFIQTHP 51 (94)
Q Consensus 28 ~d~i~~~G~~v~---~~~iE~~l~~~~ 51 (94)
|-++.++|..+. ..++.+.+...+
T Consensus 48 D~I~~vng~~v~~~~~~~~~~~l~~~~ 74 (85)
T 2i04_A 48 DVIVSVNDTCVLGHTHAQVVKIFQSIP 74 (85)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 445569999995 577778887764
No 122
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=24.61 E-value=59 Score=14.65 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=30.4
Q ss_pred EEeCcEEe--ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 31 IIRGGENI--YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 31 i~~~G~~v--~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
+++.|..- ....||..|.+.++|..+.+-. ..+ . +.+...+ ...+.++|.+.+.
T Consensus 9 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~----~~~-~--~~v~~~~-~~~~~~~i~~~i~ 64 (71)
T 2l3m_A 9 LQVEGMSCGHCVNAIESSVKELNGVEQVKVQL----AEG-T--VEVTIDS-SVVTLKDIVAVIE 64 (71)
T ss_dssp EEEECCCSHHHHHHHHHHHHTSTTEEEEEEET----TTT-E--EEEEEET-TTSCHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHHHHcCCCeEEEEEEe----cCC-E--EEEEECC-CCCCHHHHHHHHH
Confidence 34445443 2367999999999997765531 112 1 2333333 2356667766654
No 123
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=24.45 E-value=61 Score=14.76 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=18.7
Q ss_pred EeCcEEe--ChHHHHHHHhcCCCeeeEEE
Q psy5015 32 IRGGENI--YPKEIEEFIQTHPNVLEAYA 58 (94)
Q Consensus 32 ~~~G~~v--~~~~iE~~l~~~~~v~~~~v 58 (94)
++.|..- ....||..|.+.++|..+.+
T Consensus 9 ~v~gm~C~~c~~~i~~~l~~~~gv~~~~v 37 (75)
T 1yjr_A 9 VVRGMTCASCVHKIESSLTKHRGILYCSV 37 (75)
T ss_dssp EEETCCTTTHHHHHHHHHTTSTTEEEEEE
T ss_pred EECCcccHHHHHHHHHHHHcCCCEEEEEE
Confidence 3444433 34678999999999977655
No 124
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=24.29 E-value=88 Score=16.53 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=21.3
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcCCCeee
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTHPNVLE 55 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~~~v~~ 55 (94)
|.++.+||..+ +..++-+.|.+.|.-..
T Consensus 51 D~I~~VNG~~v~g~~h~evv~lLk~~~~g~~ 81 (95)
T 3gge_A 51 DHIESINGENIVGWRHYDVAKKLKELKKEEL 81 (95)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHSCTTCE
T ss_pred CEEEEECCEEccCCCHHHHHHHHHhCCCCCE
Confidence 44556999998 78899999998876433
No 125
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=24.29 E-value=59 Score=14.52 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=12.8
Q ss_pred CCCeEEcCceEEEecCCeEE
Q psy5015 3 GYACGLKQDQFVLREDGYGQ 22 (94)
Q Consensus 3 ~~~~~~TGD~~~~~~~G~~~ 22 (94)
.+..|..||.+.. +|..|
T Consensus 4 ~~~~Y~~Gd~Vty--~G~~Y 21 (45)
T 1ed7_A 4 VNTAYTAGQLVTY--NGKTY 21 (45)
T ss_dssp SSEEECTTCCEEE--TTEEE
T ss_pred CCceEcCCCEEEE--CCeEE
Confidence 3456889999887 56555
No 126
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=24.26 E-value=1e+02 Score=17.19 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=26.5
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 80 (94)
-+.|||+...+||+- -.-+++... ....+.+.+|+-+|+.
T Consensus 69 Vl~Ele~C~k~~p~~-yVRliGfD~-~~q~q~~sfIv~RP~~ 108 (118)
T 3zxw_B 69 VLNEVQQCRSEYPNC-FIRVVAFDN-IKQCQVMSFIVYKPNQ 108 (118)
T ss_dssp HHHHHHHHHHHCTTS-EEEEEEEET-TTTEEEEEEEEECC--
T ss_pred HHHHHHHHHHHCCCc-eEEEEEEeC-CcCEEEEEEEEECCCC
Confidence 357899999999973 344555543 3555677888877753
No 127
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=23.80 E-value=31 Score=18.80 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.1
Q ss_pred CCeEEeCcEEeChHHHHHHHhc
Q psy5015 28 KDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 28 ~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
..+.+++|..++|.+|.+.+.+
T Consensus 93 ~~i~~~~G~~~~~~ei~~~i~~ 114 (118)
T 3ju3_A 93 NKILKYNGRHMTEDEILKSAKE 114 (118)
T ss_dssp CCCCCBTTBCCCHHHHHHHHHH
T ss_pred eEEeeeCCeeCCHHHHHHHHHH
Confidence 4556689999999999988764
No 128
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=23.76 E-value=9.7 Score=20.56 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=19.7
Q ss_pred EEcCceEEEecCCeE-------EEEeecCCeEEeCc
Q psy5015 7 GLKQDQFVLREDGYG-------QVVGRIKDMIIRGG 35 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~-------~~~GR~~d~i~~~G 35 (94)
|.-||++.+.-||.+ ++.||+..++++.|
T Consensus 34 yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~ 69 (96)
T 1vq8_Q 34 FDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQG 69 (96)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEET
T ss_pred cCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECC
Confidence 778999999877654 35666655555443
No 129
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.55 E-value=91 Score=16.40 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=18.3
Q ss_pred ecCC-eEEeCcEEeC---hHHHHHHHhcCC
Q psy5015 26 RIKD-MIIRGGENIY---PKEIEEFIQTHP 51 (94)
Q Consensus 26 R~~d-~i~~~G~~v~---~~~iE~~l~~~~ 51 (94)
|..| ++.++|..|. ..++...|...+
T Consensus 68 ~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 97 (113)
T 1va8_A 68 HEGDEVLEINGIEIRGKDVNEVFDLLSDMH 97 (113)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4445 4559999997 677777776654
No 130
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=23.54 E-value=1.7e+02 Score=20.06 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=35.0
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 48 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~ 48 (94)
..-||..++ +.|.++.+--.++.|-++|.-++...++..+.
T Consensus 305 l~pGetlfI-PsGWwH~V~nledsIai~~NF~~~~nl~~~l~ 345 (447)
T 3kv4_A 305 VKQGQTLFI-PTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 345 (447)
T ss_dssp EETTCEEEE-CTTCEEEEEESSCEEEEEEEECCSTTHHHHHH
T ss_pred ECCCcEEec-CCCCeEEEecCCCEEEEccccccccCHHHHHH
Confidence 567898887 58999988888999999999998888877765
No 131
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=23.48 E-value=13 Score=19.94 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=26.6
Q ss_pred eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015 6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLK 77 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~ 77 (94)
|+.-||-+.+. +.|.||. ..+++.-+.+|..+ ..+.+.+.+-......|.....++.+.
T Consensus 31 FL~~GdKVKvt----i~fRGRE---------~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m~l~Pk 90 (94)
T 1tig_A 31 FLEKGDKVKAT----IRFKGRA---------ITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVLAPK 90 (94)
T ss_dssp HHHTTCEEEEE----EECCSCC---------TTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEEEEEEEES
T ss_pred HHHCCCEEEEE----EEECCcc---------ccCHHHHHHHHHHHHHHhhhhhEEecCccccCCEEEEEEEeC
Confidence 44455655553 4455552 23344444555442 223343333322222455666666654
No 132
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=23.45 E-value=61 Score=14.35 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=27.1
Q ss_pred hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
...||..+.+.++|..+.+-.. .+ .+.+...+ ...+.+++.+.+.
T Consensus 15 ~~~i~~~l~~~~gv~~~~v~~~----~~---~~~v~~~~-~~~~~~~i~~~i~ 59 (68)
T 1cpz_A 15 VARIEEAVGRISGVKKVKVQLK----KE---KAVVKFDE-ANVQATEICQAIN 59 (68)
T ss_dssp HHHHHHHHHTSTTEEEEEEETT----TT---EEEEEECT-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEEec----CC---EEEEEECC-CCCCHHHHHHHHH
Confidence 4679999999999987655311 11 12333333 2356677776654
No 133
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=23.35 E-value=94 Score=16.52 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=19.6
Q ss_pred hHHHHHHH-hcCCCeeeEEEEEeeCCCC
Q psy5015 40 PKEIEEFI-QTHPNVLEAYAYGVPDERM 66 (94)
Q Consensus 40 ~~~iE~~l-~~~~~v~~~~v~~~~~~~~ 66 (94)
..+|+++| .+.|++..+-|-...++.+
T Consensus 64 ~~~i~~al~~~l~Gv~~V~V~l~~~p~W 91 (108)
T 3lno_A 64 VSDVKKVLSTNVPEVNEIEVNVVWNPPW 91 (108)
T ss_dssp HHHHHHHHHHHCTTCCCEEEEECCSSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEEEecCCC
Confidence 45788888 8899998877765555443
No 134
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=22.85 E-value=85 Score=15.84 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred CCeEEeCcEEeCh---HHHHHHHhcCCC
Q psy5015 28 KDMIIRGGENIYP---KEIEEFIQTHPN 52 (94)
Q Consensus 28 ~d~i~~~G~~v~~---~~iE~~l~~~~~ 52 (94)
|-++.++|..+.- .++...+...+.
T Consensus 59 D~I~~ing~~v~~~~~~~~~~~l~~~~~ 86 (96)
T 2ego_A 59 DTIASVNGLNVEGIRHREIVDIIKASGN 86 (96)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHTTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 4445599999977 788888877654
No 135
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=22.76 E-value=32 Score=16.26 Aligned_cols=16 Identities=25% Similarity=0.063 Sum_probs=9.4
Q ss_pred EEcCceEE--EecCCeEE
Q psy5015 7 GLKQDQFV--LREDGYGQ 22 (94)
Q Consensus 7 ~~TGD~~~--~~~~G~~~ 22 (94)
|..||++. +.+||.+|
T Consensus 4 ~~~G~~c~A~~s~Dg~wY 21 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIY 21 (59)
T ss_dssp CCTTCEEEEECTTTSCEE
T ss_pred CCcCCEEEEEECCCCCEE
Confidence 56788443 44577643
No 136
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=22.45 E-value=1.1e+02 Score=16.91 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCeeeEEEEE
Q psy5015 41 KEIEEFIQTHPNVLEAYAYG 60 (94)
Q Consensus 41 ~~iE~~l~~~~~v~~~~v~~ 60 (94)
.++.+.+.++|.|.+|..+.
T Consensus 82 ~~~~~~l~~~p~V~~~~~~~ 101 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSVA 101 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEES
T ss_pred HHHHHHHhcCcCeEEEEEeE
Confidence 67889999999999988763
No 137
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=22.44 E-value=61 Score=19.24 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=24.2
Q ss_pred EEEecCCeEEEEeec------CCeEEeCcEEeChHHHHHHHhc
Q psy5015 13 FVLREDGYGQVVGRI------KDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~------~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
..+|.+|.|.+..+. ..+...+..+++..+|+.++..
T Consensus 107 f~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~ 149 (182)
T 3n8e_A 107 FDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKN 149 (182)
T ss_dssp EEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHH
T ss_pred EEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHH
Confidence 346788888776543 2222233467889999988765
No 138
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=21.93 E-value=1.1e+02 Score=16.93 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=29.6
Q ss_pred EEcCceEEEecCCeEEEEeecC-CeEEeCcEEeChHHHHHHHhcCCCe
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNV 53 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~-d~i~~~G~~v~~~~iE~~l~~~~~v 53 (94)
|...|.. +|..|..|.+-... ..++ +. +++.++-+.+++|...
T Consensus 45 ~~~~d~L-IDs~G~~y~L~~~~~~l~~--~~-lsl~ev~~LIq~H~~~ 88 (114)
T 2l6o_A 45 LQYGDKL-VDSNFHCFVLEEDAHWHPA--AP-LPPEGLNDLIRAHCAT 88 (114)
T ss_dssp CCTTCCE-EETTCEEEEECTTSSEEEE--EE-CCHHHHHHHHHHHHHH
T ss_pred cCCCCEE-EeCCCCEEEecCCCccccc--Cc-ccHHHHHHHHHHHHHh
Confidence 4445554 67788877665555 3333 66 9999999999988543
No 139
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=21.93 E-value=1.3e+02 Score=20.87 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=35.4
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 48 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~ 48 (94)
..-||..++ +.|.++.+--.++.|-++|.-++..-++..+.
T Consensus 340 l~pGe~lfI-PsGWwH~V~nledsIai~~NF~~~~nl~~~l~ 380 (488)
T 3kv5_D 340 VKQGHTLFV-PTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 380 (488)
T ss_dssp EETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHH
T ss_pred eCCCCEEEe-CCCceEEeeCCCCeEEEccccCCccCHHHHHH
Confidence 477898888 58999988888999999999999988887775
No 140
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=21.92 E-value=30 Score=21.16 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=22.0
Q ss_pred ceEEEecCCeEEEEeecCCeEEeCcEEeChHHHH
Q psy5015 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 44 (94)
Q Consensus 11 D~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE 44 (94)
.+.+.++||.+.|.|..=| ..|.++.-..++
T Consensus 39 ~i~y~~~dg~~~i~G~l~d---~~~~~lt~~~~~ 69 (241)
T 1v58_A 39 VTIYLTPDGKHAISGYMYN---EKGENLSNTLIE 69 (241)
T ss_dssp EEEEECTTSSCEEESCCBC---TTCCBHHHHHHH
T ss_pred eEEEEeCCCCEEEEEEEEe---CCCCcccHHHHH
Confidence 5889999999999887544 457666544444
No 141
>1wqc_A OMTX1; toxin; NMR {Opisthacanthus madagascariensis} PDB: 1wqd_A
Probab=21.86 E-value=19 Score=14.31 Aligned_cols=15 Identities=40% Similarity=0.363 Sum_probs=9.7
Q ss_pred HHHHHHhcCCCeeeE
Q psy5015 42 EIEEFIQTHPNVLEA 56 (94)
Q Consensus 42 ~iE~~l~~~~~v~~~ 56 (94)
-+|..|..+++|++|
T Consensus 3 C~evClqh~gNVkeC 17 (26)
T 1wqc_A 3 CYEVCLQQHGNVKEC 17 (26)
T ss_dssp HHHHHHHHCCCSHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 356667777777654
No 142
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=21.77 E-value=86 Score=15.48 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=17.8
Q ss_pred ecCCeE-EeCcEEe---ChHHHHHHHhcC
Q psy5015 26 RIKDMI-IRGGENI---YPKEIEEFIQTH 50 (94)
Q Consensus 26 R~~d~i-~~~G~~v---~~~~iE~~l~~~ 50 (94)
|..|.| .++|..+ +..++...+...
T Consensus 47 ~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 75 (90)
T 2eaq_A 47 QVDDEIIAINNTKFSYNDSKEWEEAMAKA 75 (90)
T ss_dssp CTTCEEEEETTEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCEEccCCCHHHHHHHHHhc
Confidence 444544 5999999 677888877653
No 143
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.73 E-value=1.1e+02 Score=16.80 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.9
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcCC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTHP 51 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~~ 51 (94)
|-++.++|..| +..++-+.|...+
T Consensus 72 D~Il~VnG~~v~~~s~~d~~~~l~~~~ 98 (126)
T 1wif_A 72 DVLISVGHANVLGYTLREFLKLLQNIT 98 (126)
T ss_dssp CBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred CEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence 44556999999 6889999888754
No 144
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=21.21 E-value=64 Score=19.69 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=23.7
Q ss_pred EEEecCCeEEEEeec------CCeEEeCcEEeChHHHHHHHhc
Q psy5015 13 FVLREDGYGQVVGRI------KDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~------~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
..+|.+|.|.+..+. ..+...+...++..+|+..+..
T Consensus 88 f~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~ 130 (219)
T 4e81_A 88 FDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRD 130 (219)
T ss_dssp EEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHH
T ss_pred EEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHH
Confidence 346788888776543 2233333445889999988765
No 145
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=21.20 E-value=78 Score=18.06 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=23.7
Q ss_pred EEEecCCeEEEEeecC-----CeEEe-Cc-EEeChHHHHHHHhc
Q psy5015 13 FVLREDGYGQVVGRIK-----DMIIR-GG-ENIYPKEIEEFIQT 49 (94)
Q Consensus 13 ~~~~~~G~~~~~GR~~-----d~i~~-~G-~~v~~~~iE~~l~~ 49 (94)
..+|.+|.|.+..+.. ..|.+ +. .+++..+|+.++..
T Consensus 87 f~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~ 130 (152)
T 3h0x_A 87 FALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEE 130 (152)
T ss_dssp EEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHH
Confidence 3468889888766532 12222 22 46889999988765
No 146
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=21.17 E-value=48 Score=15.91 Aligned_cols=21 Identities=14% Similarity=-0.140 Sum_probs=13.2
Q ss_pred CCCe-EEcCceEEEecCCeEEE
Q psy5015 3 GYAC-GLKQDQFVLREDGYGQV 23 (94)
Q Consensus 3 ~~~~-~~TGD~~~~~~~G~~~~ 23 (94)
++|+ |...|+...+++|++.-
T Consensus 7 ~DgyvF~p~dIvs~~~~gyvv~ 28 (55)
T 2cs7_A 7 DDGYIFNASDIIEDTGDAYIVP 28 (55)
T ss_dssp TTSCBCCGGGCCEECSSEEEEE
T ss_pred CCCcEECHHHheecCCCeEEEe
Confidence 3454 66677777777776543
No 147
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=21.16 E-value=72 Score=14.34 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=30.6
Q ss_pred EEeCcEEeC--hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 31 IIRGGENIY--PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 31 i~~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
+++.|..-. ...||..|...++|..+.+-.. .+ . +.+...+. ..+.+++.+.+.
T Consensus 7 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~-~--~~v~~~~~-~~~~~~i~~~i~ 62 (72)
T 1osd_A 7 LSVPGMTCSACPITVKKAISKVEGVSKVDVTFE----TR-Q--AVVTFDDA-KTSVQKLTKATA 62 (72)
T ss_dssp EECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT----TT-E--EEEEEETT-TCCHHHHHHHHH
T ss_pred EEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec----CC-E--EEEEECCC-CCCHHHHHHHHH
Confidence 345554443 3679999999999987655311 11 1 22333332 356666666554
No 148
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=21.11 E-value=1.5e+02 Score=19.90 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=35.4
Q ss_pred EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015 7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 49 (94)
Q Consensus 7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 49 (94)
..-||..++ +.|.++.+--.+|.|-++|.-++...++..+.-
T Consensus 221 l~pGEtLfI-PsGWwH~V~nledSIai~~NFl~~~nl~~~l~~ 262 (371)
T 3k3o_A 221 VKQGQTLFI-PTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKA 262 (371)
T ss_dssp EETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHH
T ss_pred ECCCcEEEe-CCCCeEEEecCCCeEEECCcccchhhHHHHHHH
Confidence 467888887 589998888889999999999999888887763
No 149
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=21.10 E-value=75 Score=14.54 Aligned_cols=53 Identities=11% Similarity=-0.059 Sum_probs=30.0
Q ss_pred EeCcEEe--ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 32 IRGGENI--YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 32 ~~~G~~v--~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
++.|..- ....||..|...++|..+.+-.. .+ .+.+...+ ...+.+++.+.+.
T Consensus 7 ~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~---~~~v~~~~-~~~~~~~i~~~i~ 61 (75)
T 3cjk_B 7 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE----EK---NATIIYDP-KLQTPKTLQEAID 61 (75)
T ss_dssp EECCCCSHHHHHHHHHHHHTSTTEEEEEEETT----TT---EEEEEECT-TTCCHHHHHHHHH
T ss_pred EECCccCHHHHHHHHHHHhcCCCeEEEEEEec----CC---EEEEEECC-CCCCHHHHHHHHH
Confidence 3444443 23679999999999987655311 11 13333333 2356666766554
No 150
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=20.92 E-value=78 Score=14.70 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=31.7
Q ss_pred EEeCcEEe--ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 31 IIRGGENI--YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 31 i~~~G~~v--~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
+++.|..- ....||..|.+.++|..+.+-.... .+.+...+ ...+.+++.+.+.
T Consensus 12 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~-------~~~v~~~~-~~~~~~~i~~~i~ 67 (79)
T 1kvi_A 12 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK-------NATIIYDP-KLQTPKTLQEAID 67 (79)
T ss_dssp EEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGT-------EEEEEECT-TTCCHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCC-------EEEEEECC-CCCCHHHHHHHHH
Confidence 44555544 3478999999999998766532211 13333333 2355666666554
No 151
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=20.79 E-value=73 Score=18.48 Aligned_cols=18 Identities=6% Similarity=-0.390 Sum_probs=13.9
Q ss_pred eEEcCceEEEecCCeEEE
Q psy5015 6 CGLKQDQFVLREDGYGQV 23 (94)
Q Consensus 6 ~~~TGD~~~~~~~G~~~~ 23 (94)
-...||++++-+.+.|.|
T Consensus 91 ~~~~GDI~Yy~pg~~LaI 108 (153)
T 2nnz_A 91 VVELGDVAYWIPGKAICL 108 (153)
T ss_dssp CCCTTEEEEETTTTEEEE
T ss_pred cCCCCeEEEeCCCCEEEE
Confidence 467899999987777653
No 152
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=20.72 E-value=1.8e+02 Score=19.89 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=14.8
Q ss_pred cEEeChHHHHHHHhcCC
Q psy5015 35 GENIYPKEIEEFIQTHP 51 (94)
Q Consensus 35 G~~v~~~~iE~~l~~~~ 51 (94)
-.++.++.+|++|.+++
T Consensus 179 ~~~id~~~le~aI~~~~ 195 (450)
T 3bc8_A 179 ELRTDLKAVEAKIQELG 195 (450)
T ss_dssp EEECCHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHhcC
Confidence 36899999999999876
No 153
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.58 E-value=1.1e+02 Score=16.21 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=17.9
Q ss_pred CCeEEeCcEEeC---hHHHHHHHhcCCC
Q psy5015 28 KDMIIRGGENIY---PKEIEEFIQTHPN 52 (94)
Q Consensus 28 ~d~i~~~G~~v~---~~~iE~~l~~~~~ 52 (94)
|-++.++|..|. ..++.+.|...++
T Consensus 58 D~Il~InG~~v~~~~~~d~~~~i~~~~~ 85 (111)
T 1vae_A 58 DYIVSIQGVDCKWLTVSEVMKLLKSFGG 85 (111)
T ss_dssp CEEEEETTEECSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 344559999996 6778888876654
No 154
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=20.52 E-value=1.1e+02 Score=16.44 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=17.5
Q ss_pred CCeEEeCcEEe---ChHHHHHHHhcC
Q psy5015 28 KDMIIRGGENI---YPKEIEEFIQTH 50 (94)
Q Consensus 28 ~d~i~~~G~~v---~~~~iE~~l~~~ 50 (94)
|-++.++|..| +..++...+.+.
T Consensus 61 D~I~~Ing~~v~~~s~~dv~~~i~~~ 86 (101)
T 3qik_A 61 RKIYSINEDLVFLRPFSEVESILNQS 86 (101)
T ss_dssp CBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred CEEEEECCEEcCcCCHHHHHHHHHHh
Confidence 45566999998 688888877663
No 155
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=20.48 E-value=86 Score=15.01 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=27.1
Q ss_pred ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
....||..|.+.++|..+.+- ...+ .+.+...+ ...+.+++.+.+.
T Consensus 23 C~~~ie~~l~~~~GV~~~~v~----~~~~---~~~v~~~~-~~~~~~~i~~~i~ 68 (84)
T 1q8l_A 23 CTSTIEGKIGKLQGVQRIKVS----LDNQ---EATIVYQP-HLISVEEMKKQIE 68 (84)
T ss_dssp SCHHHHHHHHTCTTEEEEEEC----STTT---EEEEEECT-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEE----ecCC---EEEEEECC-CCCCHHHHHHHHH
Confidence 457799999999999776542 1112 12333333 2356666766554
No 156
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=20.40 E-value=1.1e+02 Score=15.97 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=31.7
Q ss_pred EEeCcEEeC--hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015 31 IIRGGENIY--PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 92 (94)
Q Consensus 31 i~~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 92 (94)
+++.|.... ...||..|.+.++|..+.+-.. .+ .+.|...+ ...+.++|.+.+.
T Consensus 12 l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~----~~---~~~V~~~~-~~~~~~~i~~~i~ 67 (111)
T 2ofg_X 12 MQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA----TG---RLTVTYDP-KQVSEITIQERIA 67 (111)
T ss_dssp EEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT----TT---EEEEEECT-TTCSHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC----CC---EEEEEECC-CCCCHHHHHHHHH
Confidence 445555443 3679999999999987665311 11 23334433 2356666766654
No 157
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=20.29 E-value=27 Score=20.56 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=6.9
Q ss_pred CeEEcCceE
Q psy5015 5 ACGLKQDQF 13 (94)
Q Consensus 5 ~~~~TGD~~ 13 (94)
|||+|+...
T Consensus 94 GWY~s~~~~ 102 (187)
T 2o95_A 94 GWYHTGPKL 102 (187)
T ss_dssp EEEECCSSC
T ss_pred EEEcCCCcC
Confidence 899998643
No 158
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=20.25 E-value=42 Score=17.00 Aligned_cols=33 Identities=12% Similarity=-0.103 Sum_probs=23.4
Q ss_pred CeEEeCcEEeChHHHHHHHhcC---CCeeeEEEEEe
Q psy5015 29 DMIIRGGENIYPKEIEEFIQTH---PNVLEAYAYGV 61 (94)
Q Consensus 29 d~i~~~G~~v~~~~iE~~l~~~---~~v~~~~v~~~ 61 (94)
+.|.+.|..-+|.++.+.|.+- .+-.-..++..
T Consensus 21 gtVsvsg~~~sp~D~~~~lskkAdekGA~~y~Ii~~ 56 (72)
T 4evu_A 21 DSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQ 56 (72)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cEEEECCccCChHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 3577888889999999999873 34444555544
Done!