RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5015
(94 letters)
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 142 bits (361), Expect = 9e-42
Identities = 48/81 (59%), Positives = 60/81 (74%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
V+ E+GY +VGRIKDMIIRGGENIYP+EIEEF+ THP + + GVPDE+ GEEV
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495
Query: 74 IKLKENAKLNADDIRTFCKGK 94
I L+ A L +D+R FC+GK
Sbjct: 496 IILRPGATLTEEDVRDFCRGK 516
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 134 bits (341), Expect = 4e-40
Identities = 48/84 (57%), Positives = 59/84 (70%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA GVPDER+GE V
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+ LK A L +++ FC+G+
Sbjct: 294 AAFVVLKPGATLTEEELIAFCRGR 317
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 108 bits (273), Expect = 1e-29
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY +V R KDMII GG N+YP+EIEE + +HP VLEA GVPD GE V + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420
Query: 77 KENAKLNADDIRTFCK 92
KE A L +++ FC+
Sbjct: 421 KEGASLTEEELIAFCR 436
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 109 bits (273), Expect = 2e-29
Identities = 42/84 (50%), Positives = 58/84 (69%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V + +GVPDE+ GEE+
Sbjct: 434 DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
++L + +++R FCK +
Sbjct: 494 VAWVRLHPGHAASEEELREFCKAR 517
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 103 bits (260), Expect = 3e-28
Identities = 37/78 (47%), Positives = 49/78 (62%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY +V R KDMII GGENIYP E+E + HP V + GVPDE GE V + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Query: 77 KENAKLNADDIRTFCKGK 94
+ A L+A+++ FC+ +
Sbjct: 295 RPGATLDAEELIAFCRER 312
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 104 bits (261), Expect = 8e-28
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D + EDGY +VGR+KD+II GGENIYP+EIE + HP V EA GVPDER GE V
Sbjct: 407 DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERV 466
Query: 71 GISIKLKE--NAKLNADDIRTFCKGK 94
+ LK +A+L A+++R F + +
Sbjct: 467 VAVVVLKPGGDAELTAEELRAFLRKR 492
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 102 bits (256), Expect = 8e-28
Identities = 38/82 (46%), Positives = 55/82 (67%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D L EDGY + GRIK++I RGGE I P+E+EE + HP V EA +GVPDE GEEV
Sbjct: 231 DLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEV 290
Query: 71 GISIKLKENAKLNADDIRTFCK 92
++ L+ ++K+ +++R F +
Sbjct: 291 AAAVVLRADSKVTIEELRDFAR 312
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 102 bits (256), Expect = 3e-27
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D + DGY +VVGRIKD I RGGE I P+EIE + +HP V +A G+PDE +GE +
Sbjct: 370 DLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERI 429
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+ + A ++R F + +
Sbjct: 430 CAFVVPRGGAAPTLAELRAFLREQ 453
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 101 bits (255), Expect = 5e-27
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
+ EDGY + RIKD+II GGENIYP+E+E+ + HP V E GVPDE+ GE
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463
Query: 74 IKLKENAKLNADDIRTFCKGK 94
+ LK A L+A ++R F +G+
Sbjct: 464 VVLKPGATLDAKELRAFLRGR 484
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 94.6 bits (236), Expect = 2e-24
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
L E+GY +V R KDM I GG N+YP E+EE + HP V EA GVPDER+GE
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460
Query: 74 IKLKENAKLNADDIRTFCK 92
+ LK A+L +++ +C+
Sbjct: 461 VVLKPGAELTEEELIAYCR 479
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 92.3 bits (230), Expect = 1e-23
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
L DGY ++ GR KD+IIRGGENI +EIE+ + HP V E +PDER+GE V
Sbjct: 325 RLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAV 384
Query: 74 IKLKENAKLNADDIRTFCKGK 94
+ A L ++ +
Sbjct: 385 VVPAPGASLTLAELTEHLAAQ 405
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 90.8 bits (226), Expect = 2e-23
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D L E+GY + GR KD+I GGEN+YP E+E + HP V EA GVPDE GE +
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ L+ A A++++ +
Sbjct: 290 VAFVVLRPGADALAEELKAHLR 311
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 90.4 bits (225), Expect = 5e-23
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 14 VLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 72
V+ EDGY +++GR D II+ GG + EIEE + HP V E GVPD GE V
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382
Query: 73 SIKLKENAKLNADDIRTFCKGK 94
+ + A L ++R + + K
Sbjct: 383 VVVPEAGAALTLAELRAWAREK 404
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 88.8 bits (221), Expect = 2e-22
Identities = 31/84 (36%), Positives = 42/84 (50%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D+ EDG+ V R KD I R GENI E+E I HP V EA VP E +EV
Sbjct: 308 DRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEV 367
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+ L+ L+ + + FC+ +
Sbjct: 368 KAVVVLRPGETLDPEALLEFCRDR 391
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 87.0 bits (216), Expect = 1e-21
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A G+P E EEV
Sbjct: 451 DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV 510
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
++ L+ A L+ + +R +C+
Sbjct: 511 VAAVVLEPGAALDPEGLRAYCREH 534
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 86.6 bits (215), Expect = 2e-21
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
V+ E GY ++V R KDMI+ G N+YP EIEE + +HP VLE A GVPDE GE V +
Sbjct: 444 VMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLF 503
Query: 74 IKLKENAKLNADDIRTFCK 92
+ +K++ L +D++ FCK
Sbjct: 504 V-VKKDPALTEEDVKAFCK 521
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 84.9 bits (210), Expect = 5e-21
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 18 DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
D G V GR+ DMII GGENI+P E+E + P V E G+PDER G+ V +
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446
Query: 76 LKENAKLNADDIRTFC 91
+E L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 84.2 bits (209), Expect = 9e-21
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
+GY V+GR D+II GGENIYP+EIE + HP V EA GVPD+ G+ +
Sbjct: 300 AEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVP 359
Query: 77 KENAKLNADDIRTFCKGK 94
+ ++ ++++ F K
Sbjct: 360 -NDDPVSVEELQAFLADK 376
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 84.2 bits (209), Expect = 1e-20
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDG V GR DMI+ GGEN++P E+E+ + HP+V+EA GV DE G+ + +
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498
Query: 77 KENAKLNADDIRTFCKGK 94
A L+ D I+ + +
Sbjct: 499 APGAALDEDAIKDYVRDN 516
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 82.9 bits (205), Expect = 3e-20
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D +++EDGY ++V R KDMI+ G N+YP E+E+ + P VL+ A GVPDE+ GE +
Sbjct: 439 DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI 498
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + +K L + + +
Sbjct: 499 KVFVVVKPGETLTKEQVMEHMR 520
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 82.6 bits (204), Expect = 4e-20
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDG+ +VGR K+MII GGENIYP E+E+ I +V E G + GE I
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442
Query: 77 KENAKLNADDIRTFCK 92
K ++ L D+ C+
Sbjct: 443 KSSSVLIEKDVIEHCR 458
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 82.0 bits (203), Expect = 6e-20
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDG+ +V R KDMI+ GG N++P+E+E+ + HP V + GVPDE+ GE V + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464
Query: 77 KENAKLNADDIRTFCK 92
+ A ++A +++ K
Sbjct: 465 RPGAAVDAAELQAHVK 480
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 81.5 bits (202), Expect = 1e-19
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
V+ DGY ++ R KD+II GGENI E+E + HP VLEA PDE+ GE
Sbjct: 410 VVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469
Query: 74 IKLKENAKLNADDIRTFCKGK 94
+ LK A + +++ +C+ K
Sbjct: 470 VVLKPGASVTEEELIEYCREK 490
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 81.5 bits (202), Expect = 1e-19
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
V+ E+GY VV R KDMI GGEN+ +E+EE + THP V E G+PD + E V
Sbjct: 404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463
Query: 74 IKLKENAKLNADDIRTFCKGK 94
+ K A + D++ C+ +
Sbjct: 464 VVPKAGATVTEDELIAHCRAR 484
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 79.5 bits (196), Expect = 5e-19
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L G + GRIK++I RGGE I P+ +E + +HPNV+EA +GVPD+ GE V I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477
Query: 75 KLKENAKLNADDIRTFCKGK 94
+E+A A+++ FC+ +
Sbjct: 478 VPRESAPPTAEELVQFCRER 497
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 78.1 bits (193), Expect = 2e-18
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L E+G+ V+ R D+II GGENIYP EIEE + +HP V EA GVPD++ G +V ++
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428
Query: 75 KLKENAKLNADDIRTFCKGK 94
+ ++ ++ +++R FC+ K
Sbjct: 429 -VVKSGEVTEEELRHFCEEK 447
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 77.8 bits (192), Expect = 2e-18
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L G+ + GR DM I GG N+YP+EIEE + THP V E GVPD G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462
Query: 75 -KLKENAKLNADDIRTFCKGK 94
++ A ++ ++ + GK
Sbjct: 463 CVARDGAPVDEAELLAWLDGK 483
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 78.1 bits (192), Expect = 2e-18
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
DGY +V R KDMII GG N+YP+ IE+ I HP V E G+PD+ GE +KL
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492
Query: 77 KENAK-LNADDIRTFCKGK 94
+ AK + D++R F GK
Sbjct: 493 RPGAKPFSLDELRAFLAGK 511
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 77.6 bits (192), Expect = 2e-18
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L EDGY + R DMII GG NIYP+EIE + THP V + +GVPDE MGE V +
Sbjct: 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV 438
Query: 75 KLKENAKLN---ADDIRTFCKGK 94
+ + A A ++ + +G+
Sbjct: 439 QPADGADAGDALAAELIAWLRGR 461
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 77.3 bits (191), Expect = 3e-18
Identities = 32/76 (42%), Positives = 40/76 (52%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
DGY + GR KD+IIRGG NI P IEE + HP V A A G PD GE ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516
Query: 77 KENAKLNADDIRTFCK 92
K A ++ F +
Sbjct: 517 KPGASATEAELLAFAR 532
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 76.6 bits (189), Expect = 5e-18
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 2 DGY-ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60
DG+ A G D V+ E+G+ ++V R KDMI+ G N+YP EIE+ + HP VLE A G
Sbjct: 431 DGWLATG---DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVG 487
Query: 61 VPDERMGEEVGISIKLKENAKLNADDIRTFCK 92
VP E GE V I + +K++ L +++ T C+
Sbjct: 488 VPSEVSGEAVKIFV-VKKDPSLTEEELITHCR 518
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 75.6 bits (186), Expect = 1e-17
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
DG+ VV R KDM I GGEN+YP EIE + HP + E G+ D + GE ++I
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPA 433
Query: 78 ENAKLNADDIRTFCKGK 94
+ A L+ + IR+ +
Sbjct: 434 DGAPLDLERIRSHLSTR 450
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 74.6 bits (184), Expect = 2e-17
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D + E+GY VGR DMI G + P EIEE I HP V EA GVPD +G+ +
Sbjct: 237 DLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + L+ ++ C+
Sbjct: 297 VAVVVSADGESLDEKELLKHCR 318
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 74.8 bits (184), Expect = 2e-17
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D+ V DG+ + V RIKD I R GENI E+E+ + +HP V A + VP E +EV
Sbjct: 406 DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV 465
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
++ L++ L + C+ +
Sbjct: 466 MAAVVLRDGTALEPVALVRHCEPR 489
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 74.9 bits (184), Expect = 3e-17
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V+ DG+ ++V R KD+II G N+YP EIE+ + HP V A GVPDER GE V
Sbjct: 447 DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAV 506
Query: 71 GISIKLKENAKLNADDIRTFCK 92
+ + ++ L+ ++++ +CK
Sbjct: 507 KLFVVARD-PGLSVEELKAYCK 527
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 74.3 bits (183), Expect = 3e-17
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
DGY + GR KD+IIRGG NI P+ IEE + HP V A A G PD GE ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305
Query: 77 KENAKLNADDIRTFCK 92
K A + ++ F K
Sbjct: 306 KPGATVTEGELLAFVK 321
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 74.1 bits (182), Expect = 4e-17
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E G+ +V R KDMI+ G N+YP EIE+ I P VLE A GVPDE+ GE V + I +
Sbjct: 449 EQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-V 507
Query: 77 KENAKLNADDIRTFCK 92
K++ L A+D++ +
Sbjct: 508 KKDPALTAEDVKAHAR 523
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 73.8 bits (182), Expect = 5e-17
Identities = 34/78 (43%), Positives = 43/78 (55%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E GY +VGR KD+II GG N+YPKE+E I P V+E+ GVP GE V +
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 77 KENAKLNADDIRTFCKGK 94
K A L+ I KG+
Sbjct: 449 KPGAALDEAAILAALKGR 466
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 73.1 bits (180), Expect = 1e-16
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
VL DGY ++ R KD+II GGENI E+E+ + HP VL A PD + GE
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF 484
Query: 74 IKLKENAKLNADDIRTFCK 92
++LK+ A ++I C+
Sbjct: 485 VELKDGASATEEEIIAHCR 503
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 72.7 bits (178), Expect = 1e-16
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D L G +VGR DMII GGEN+YP+ +E + HP V + GVPDER G +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+ L + ++A +R + K +
Sbjct: 462 AAFVVLHPGSGVDAAQLRDYLKDR 485
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 72.4 bits (178), Expect = 2e-16
Identities = 29/54 (53%), Positives = 36/54 (66%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + R MII GG NIYP+E E + THP V +A +GVP+E +GEEV
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEV 447
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 71.9 bits (177), Expect = 2e-16
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
+G+ C D + DGY VVGR KD I RGGE I +EIE + HP V+ A +
Sbjct: 408 NGFYC--SGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSM 465
Query: 62 PDERMGE 68
DE MGE
Sbjct: 466 EDELMGE 472
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 71.5 bits (176), Expect = 2e-16
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+ V +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315
Query: 75 KLKENAKLNADDIRTFCKG 93
+L+ A L+ ++R C+
Sbjct: 316 QLRAGAGLDLAELRDHCRQ 334
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 71.3 bits (175), Expect = 4e-16
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+G+ +VGR K+MI+ GG NI+P+EIE + HP V E GVPD GE+ IK
Sbjct: 373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432
Query: 77 KENAKLNADDIRTFCKGK 94
+ +++FC +
Sbjct: 433 SATKQ----QLKSFCLQR 446
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 70.6 bits (173), Expect = 7e-16
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 2 DGYACGLKQD---QFV-------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 51
DGY G +D F+ L E+G VVGR +MI+ GGEN+YP E+E+ + THP
Sbjct: 403 DGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHP 462
Query: 52 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT 89
+V EA GV DE+ G+ + + LK A + ++
Sbjct: 463 DVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQ 500
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 70.3 bits (172), Expect = 1e-15
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V DGY ++ R KD+II GGENI E+E + THP VLEA PDER GE
Sbjct: 436 DLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESP 495
Query: 71 GISIKLKENAKLN-----ADDIRTFCKGK 94
+ LK + A+DI FC+ +
Sbjct: 496 CAFVTLKPGVDKSDEAALAEDIMKFCRER 524
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 69.8 bits (171), Expect = 1e-15
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 75
E+GY VV R KDMII GGENIY E+E + +HP+++E G DE+ GE V ++
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470
Query: 76 LKENAKLNADDIRTFCKGK 94
++A L +D+ F +
Sbjct: 471 RNDDAALTLEDLAEFLTDR 489
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 69.3 bits (170), Expect = 2e-15
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 58
D EDGY +++GR D + GE I P EIE + HP V EA
Sbjct: 365 DLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 68.6 bits (168), Expect = 3e-15
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L +G+ V+GR D+II GGENIYP+EIE + HP + EA PD G +V ++
Sbjct: 330 LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWG-QVPVAY 388
Query: 75 KLKENAKLNADDIRTFCKGK 94
+ + ++ + + K
Sbjct: 389 -IVSESDISQAKLIAYLTEK 407
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 68.6 bits (168), Expect = 3e-15
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E GY ++ GR KD+I+RGGENI +E+E+ + HP + +A +PDER+GE + L
Sbjct: 422 EAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481
Query: 77 KEN 79
K
Sbjct: 482 KAP 484
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 68.5 bits (168), Expect = 4e-15
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+GY + R+K MI G ++P E+E + HP VLE G PD R GE V + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381
Query: 77 KENA--KLNADDIRTFCKG 93
K + K+ +DI +C+
Sbjct: 382 KPDYRGKVTEEDIIEWCRE 400
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 68.3 bits (167), Expect = 4e-15
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 18 DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
D G + +GR D I GGEN+YP+E+E + HP V GVPD R+ E V ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484
Query: 76 LKEN 79
L++
Sbjct: 485 LRDG 488
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 68.2 bits (167), Expect = 5e-15
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L DGY + R +DM+I GG NIYP EIE + P V + +G+PD GE + +
Sbjct: 389 LDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVV 448
Query: 75 KLKENAKLNADDIRTFCKG 93
+ + A L+ DIR K
Sbjct: 449 EPQPGATLDEADIRAQLKA 467
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 68.0 bits (167), Expect = 5e-15
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDG +V R K++I G + P E+E + HP V +A G+PDE GE + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443
Query: 77 KENAKLNADDIRTFCKGK 94
K +KL +++ + K
Sbjct: 444 KPGSKLTEQEVKDYVAKK 461
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 67.6 bits (166), Expect = 7e-15
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+EV +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477
Query: 75 KLKENAKLNADDIRTFC 91
+L+E A+ + ++R C
Sbjct: 478 QLREGARPDLAELRAHC 494
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 67.2 bits (164), Expect = 1e-14
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
L E+G+ + R KDMII GGENI E+E I P V EA GV D+R GE + +
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
Query: 75 KLKENAKLNADDIRTFCKGK 94
L A L + + C+ +
Sbjct: 443 VLNPGATLTLEALDRHCRQR 462
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 65.7 bits (161), Expect = 4e-14
Identities = 31/78 (39%), Positives = 41/78 (52%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY Q+ R KD+I GGE I E+E + HP V EA GVP E+ GE + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468
Query: 77 KENAKLNADDIRTFCKGK 94
K AK+ +++ K
Sbjct: 469 KPGAKVTEEELLEHLAKK 486
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 65.5 bits (160), Expect = 4e-14
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
DGY ++ GR KD+IIRGGENI EIE + HP + + PDER+GE + +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491
Query: 78 ENAKLNADDIRTFCKGK 94
L+ +++ F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 65.1 bits (159), Expect = 6e-14
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D DGY V GR+KD I RGGE I +E+E + HP V +A +PDE +GE+
Sbjct: 420 DLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKS 479
Query: 71 GISIKLKENAKLNADDIRTF 90
I +KE L A +R F
Sbjct: 480 CAFIVVKE-PPLRAAQLRRF 498
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 64.9 bits (158), Expect = 7e-14
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
+GY ++ GR KD+IIRGGENI EIE + HP V + PDER+GE + K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489
Query: 78 ENAKLNADDIRTFCKGK 94
L+ + F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 63.6 bits (154), Expect = 2e-13
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 10 QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 394 GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 453
Query: 70 VGISIKLKENAKLNADDIRTFCKGK 94
+ + K +++
Sbjct: 454 PLAVVVPRG-EKPTPEELNEHLLKA 477
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 62.7 bits (153), Expect = 4e-13
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+GY + R+K MI G ++P E+E + HP + EA PD R GE V + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487
Query: 77 KENA--KLNADDIRTFCKG 93
+ A K ++I + +
Sbjct: 488 RPEARGKTTEEEIIAWARE 506
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 62.0 bits (150), Expect = 8e-13
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
+ EDG+ V R KDMI+ G N+YP+E+EE + H V E GVPD GE V +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500
Query: 75 KLKENAKLNADDIRTFCK 92
LKE + + +++ F +
Sbjct: 501 VLKEGTECSEEELNQFAR 518
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 61.0 bits (148), Expect = 2e-12
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D L +GY VVGR KD I RGGE I +EIE + HP V +A +PDE +GE+
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS 472
Query: 71 GISIKLKENAKLNADDIRTFCKG 93
I +++ A L A +R F +
Sbjct: 473 CAFIVVRDPA-LKAAQLRRFLRE 494
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 60.8 bits (148), Expect = 2e-12
Identities = 29/62 (46%), Positives = 32/62 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
DGY GR D+I G I P EIEE + HP VLEA GVPD GE V + L
Sbjct: 328 ADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVL 387
Query: 77 KE 78
E
Sbjct: 388 AE 389
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 60.6 bits (147), Expect = 2e-12
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D F EDGY V R DMI+ G NI E+E+ + THP+V E GVPDE G+ V
Sbjct: 371 DIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIV 430
Query: 71 GISIKLKENAK---LNADDIRTFCK 92
I L++ K L A+ ++ F K
Sbjct: 431 CAHIVLRDGTKATELLAERLQDFVK 455
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 59.6 bits (144), Expect = 5e-12
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY + R MII GG NIYP+E E + HP V + GVPD MGE+V I+L
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450
Query: 77 KE 78
E
Sbjct: 451 VE 452
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 58.9 bits (143), Expect = 9e-12
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
L GY ++GR II GGEN+YP E+E I V + G+PD GE V
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV 389
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 58.8 bits (143), Expect = 1e-11
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 63
Y G D EDGY + GR D+I G+ I P EIE + HP V EA GVPD
Sbjct: 398 YRTG---DWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPD 454
Query: 64 ERMGEEVGISIKLKENAKLN--ADDIRTFCK 92
G+ V + L + N A++IR
Sbjct: 455 PGKGQIVLAFVVLAAGVEPNELAEEIRRHVA 485
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 58.9 bits (143), Expect = 1e-11
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+G+ V R +MI RGGEN+ E+E I THP + + G+ D E + + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469
Query: 77 KENAKLNADDIRTFC 91
E L+ ++ FC
Sbjct: 470 NEGETLSEEEFFAFC 484
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 55.8 bits (135), Expect = 1e-10
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E G+ +GR K+M+ G +++P E+E + HP VL + G PD G+ ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513
Query: 77 KENAKLNADDIRTFCK 92
K A L A ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 55.8 bits (134), Expect = 1e-10
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 16 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
REDG+ + GR +MII GG NI P E++ + V EA Y +PDE G VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 55.4 bits (134), Expect = 1e-10
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D++ EDGY GR DM+ G + P E+E+ + HP VLEA G DE +
Sbjct: 390 DKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKP 449
Query: 71 GISIKLKENAKLN---ADDIRTFCKGK 94
+ LK+ + + +++ F K K
Sbjct: 450 KAFVVLKDGYQPSPELETELKDFVKDK 476
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 54.4 bits (131), Expect = 3e-10
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY +GR D+II G I P ++E + HP V EA GVPD GE V + L
Sbjct: 329 EDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVL 388
Query: 77 KENAKLN---ADDIRTFCKGK 94
KE + A++++ F K +
Sbjct: 389 KEGYAGSDELAEELQLFVKKR 409
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 54.3 bits (131), Expect = 4e-10
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY VGR D+I G I P E+E + HP V EA G PD GE V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 53.9 bits (130), Expect = 4e-10
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
DGY GR+ D + GEN+ IE + +P+ E Y VPD +G++V ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452
Query: 77 KENAKLNADDIRTF 90
AK + D F
Sbjct: 453 APGAKFDPDAFAEF 466
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 53.9 bits (130), Expect = 5e-10
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 65
D+F DG+ + GR DMI G+ + P E+E + HP V EA VPDE
Sbjct: 320 DRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDED 374
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 53.0 bits (128), Expect = 9e-10
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 72
V GR+KD+II G N YP++IE ++ L A A+ V + E + +
Sbjct: 434 VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 53.1 bits (127), Expect = 1e-09
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V+ DG+ ++ R KD+II GGENI E+E + +P VLE +P GE
Sbjct: 426 DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETP 485
Query: 71 GISIKLKENAKLNADDIRTF 90
+ L++ D +
Sbjct: 486 CAFVVLEKGETTKEDRVDKL 505
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 52.8 bits (127), Expect = 1e-09
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY VGR D+I G I P E+E + HP VLE GVPD G+ V +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483
Query: 77 KEN 79
+
Sbjct: 484 TKG 486
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 52.6 bits (127), Expect = 2e-09
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE-VGISIKLKENAK 81
++GR+ ++ GGE I P+EIE I HP V + + V D G+ V + ++ +++
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAV---VESDSE 405
Query: 82 LNADDIRTFCKGK 94
++ + + K
Sbjct: 406 AAVVNLAEWLQDK 418
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 52.4 bits (126), Expect = 2e-09
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
GY ++ R KD+I GGE I ++E HP V EA GV + E + ++L
Sbjct: 422 AYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481
Query: 77 KENAKLNADDIRTFCKGK 94
K ++I + GK
Sbjct: 482 KPGETATREEILKYMDGK 499
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 51.9 bits (125), Expect = 2e-09
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 70
DGY + GR KD+II G NI+P++IE + P + +A A+ + E GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 52.0 bits (125), Expect = 3e-09
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E G +GR+ D+I G N+YP E+E+ + P V EA Y D GE V K
Sbjct: 303 ERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV----KA 358
Query: 77 KENAKLNAD--DIRTFC 91
K + D +R +C
Sbjct: 359 KVISHEEIDPVQLREWC 375
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 51.9 bits (125), Expect = 3e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY V+GR D+I G + E+EE + HP+V E GV DE G+ + L
Sbjct: 473 EDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVL 532
Query: 77 KENAKLNADDIRT 89
K++ K++AD +
Sbjct: 533 KDDCKIDADQLEN 545
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 51.3 bits (123), Expect = 4e-09
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY VGR D+I G + P E+E + HP V EA G PD GE V + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391
Query: 77 KENAKLNAD---DIRTFCKGK 94
+ + + + ++ TF + +
Sbjct: 392 RPGFEPSEELRRELLTFARQR 412
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 51.2 bits (123), Expect = 4e-09
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
DG V+GR D I GG + P+ +E + THP V + +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 50.6 bits (122), Expect = 6e-09
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 17 EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 65
EDG+ + R KD+I+ GG+NI P+ IE ++ P + +A G D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 50.8 bits (122), Expect = 6e-09
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
DG+ GR D + GEN+ IE + HP + Y VPDER+G++V ++ L
Sbjct: 392 ADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451
Query: 77 KENAKLNADDIRTF 90
++ A + D F
Sbjct: 452 RDGATFDPDAFAAF 465
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 50.7 bits (122), Expect = 6e-09
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY +V R+K++I G + P E+E + +HP + +A PDE GE +
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457
Query: 77 KENAKLNADDIRTF 90
+ ++L+ D++ F
Sbjct: 458 QPGSELSEDEVMQF 471
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 50.3 bits (121), Expect = 8e-09
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEE 69
D GY V R+ D GEN+ E+EE + HP V EA YGV G
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRA 383
Query: 70 VGISIKLKENAKLNAD 85
++ L A +
Sbjct: 384 GMAALTLAPGAAFDPQ 399
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 50.0 bits (120), Expect = 1e-08
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 11 DQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG--------- 60
D L EDGY + GR K++I G+NI P+ IE + P + + G
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVAL 514
Query: 61 -VPDERMGEEVGISIKLKENA 80
VPD E+ S+ +A
Sbjct: 515 IVPDFDALEKWAESLNKVISA 535
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 50.2 bits (120), Expect = 1e-08
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
E+G+ VGR +MI G + P E+EE V EA A+GVPD +G+ + + +
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467
Query: 77 KENAKLNADDIRTFCK 92
+L+ + C+
Sbjct: 468 PGGEELDRAALLAECR 483
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 49.8 bits (119), Expect = 1e-08
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D+ ++ EDGY VGR D+I G I P E+E + HP V+E+ PD GE V
Sbjct: 408 DRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 50.0 bits (120), Expect = 1e-08
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY ++GR D I G+ + P EIE + +HP V EA A GVPD GE + + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406
Query: 77 KENAKLNADDIRT 89
K +A
Sbjct: 407 KPGVTPSAALEAE 419
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 49.4 bits (118), Expect = 2e-08
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
DG+ + R +D+I GGE IY ++E +I P V+E G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 48.7 bits (116), Expect = 4e-08
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY ++GR D+I G + +EIEE + +HP+V E GV DE G+ + L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543
Query: 77 KENAKLNADDIR 88
KE+
Sbjct: 544 KESDSAGDAHDP 555
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 48.4 bits (116), Expect = 4e-08
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 11 DQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
D V+ DG ++VGR D+I GG I EIE + HP V EA GVPD+ +G+
Sbjct: 356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415
Query: 70 V 70
+
Sbjct: 416 I 416
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 48.3 bits (115), Expect = 5e-08
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
EDGY +V R+K++I G I P ++E + +HP +++A VPD+ GE
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGE 493
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 48.0 bits (115), Expect = 6e-08
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY GR+ D+I GE + P E+E + HP V EA G PD GE + + L
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503
Query: 77 KE 78
+
Sbjct: 504 RP 505
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 48.0 bits (115), Expect = 7e-08
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
+DGY + GR+ D+I G + EIE + +HP V EA G+PD+ G+ + + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546
Query: 77 KENAKLNAD 85
K+ + + +
Sbjct: 547 KDGYEPDDE 555
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 47.6 bits (114), Expect = 9e-08
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 73
+G + GR KD+II G+N YP +IE + + A GV DE+ EEV I
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439
Query: 74 IKLKENAK 81
++ +++
Sbjct: 440 VEYRQSLD 447
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 47.6 bits (114), Expect = 9e-08
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
DGY ++GR D+I G + +EIEE I +HP V E GV D G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 47.4 bits (113), Expect = 1e-07
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
DG+ Q+ R KD+I GGE I +IE HP V EA + E + + +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481
Query: 78 ENAKLNADDIRTFCKGK 94
A++ +++ F +GK
Sbjct: 482 PGAEVTREELLAFYEGK 498
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 46.9 bits (112), Expect = 1e-07
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Query: 19 GY----GQVV--GRIKDMIIRGGENIYPKEIEE 45
GY G+VV GR+KD+II G NIYP +IE
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 46.5 bits (110), Expect = 2e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
+DG +V RIK++I G + P E+E + THP+V +A +PDE GE + +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488
Query: 77 KENAKLNADDIRTF 90
AK + +DI F
Sbjct: 489 NPKAKESEEDILNF 502
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 45.6 bits (109), Expect = 4e-07
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
EDGY ++GR+ D+I G + E+E + +HP V EA G PDE GE + + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534
Query: 77 KENAK 81
K+ +
Sbjct: 535 KDGVE 539
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 44.9 bits (107), Expect = 7e-07
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 80
+VGRIKD++I G N YP +IE IQ T V A VPD+ + V I I+LK+
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509
Query: 81 KLNADDIRTFC 91
+ + +
Sbjct: 510 DSDEEAMDRLR 520
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 44.4 bits (105), Expect = 1e-06
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 64
D++V +DG GR DM+ G + P EIE + HP VLEA GV DE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 44.6 bits (106), Expect = 1e-06
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 14 VLREDGY-----------GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--A 58
EDG+ G++ GR KDMII G N Y EIE ++ P V ++ A
Sbjct: 424 AFTEDGWFRTGDLGFLHDGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAA 483
Query: 59 YGVPDERMGEE 69
V D G +
Sbjct: 484 CAVRDAGSGTD 494
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 42.5 bits (100), Expect = 6e-06
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 16 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAYGVPDERMGEEVGI 72
DG V GR+KDM+I G N+YP++IE+ ++ V+ A+ V + GEE GI
Sbjct: 439 LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE-GI 495
Query: 73 SI 74
I
Sbjct: 496 GI 497
Score = 30.5 bits (69), Expect = 0.096
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 15 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA 56
LR DG + VGRI + IRG I EIE + HP V EA
Sbjct: 2578 LRADGLVEYVGRIDHQVKIRGFR-IELGEIESRLLEHPAVREA 2619
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 39.7 bits (93), Expect = 6e-05
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
EDGY VGR D+ I P E+E + HP V EA PD I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377
Query: 75 KLKENAKLNAD---DIRTFCKGK 94
LK + + + ++ + +
Sbjct: 378 VLKPGYEPSRELALELFAHVRER 400
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 38.6 bits (90), Expect = 1e-04
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 70
DG + GRI D+I+ G N YP++IE + + P V Y A+ VP E V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 37.1 bits (86), Expect = 4e-04
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 15 LREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
LR+D G+ + R+ D EN+ E+ + + P+V EA YGV
Sbjct: 346 LRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGV 394
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 37.4 bits (87), Expect = 4e-04
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 15 LREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 49
L +DG+ + GRIK++II GGEN+ P IEE ++
Sbjct: 429 LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 37.0 bits (87), Expect = 4e-04
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
EDGY + GR+ D++ G + EIE + HP V EA G PD+ G+ +
Sbjct: 495 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 36.8 bits (85), Expect = 5e-04
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
+DGY + GR+ D+I G I E+E + +HP EA G+ E G+ + + L
Sbjct: 525 KDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL 584
Query: 77 KENAKLNAD 85
E + +
Sbjct: 585 VEGVPYSEE 593
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 36.6 bits (85), Expect = 7e-04
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 18 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 70
DG + GR+KD++I G N YP+++E Q + Y A+ VP ++ + V
Sbjct: 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 36.3 bits (84), Expect = 7e-04
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 63
E+GY +V R D I G + IE I HP VLE + G+ D
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 35.6 bits (83), Expect = 0.001
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 14 VLREDGYG--QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 62
++R+DG+G Q V R+ D GEN+ E+E + P V EA YGV
Sbjct: 446 LMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE 496
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 34.7 bits (80), Expect = 0.003
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 1 MDGY---ACGLKQDQFVLREDGY----GQVV-GRIKDMIIRGGENIYPKEIE 44
M GY A D F + GY G VV GR K++I G NI+P EIE
Sbjct: 383 MSGYLGQAPIDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIE 434
>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase.
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the
first step in aromatic catabolism of phenylacetic acid
(PA) into phenylacetyl-CoA (PA-CoA). Often located in a
conserved gene cluster with enzymes involved in
phenylacetic acid activation (paaG/H/I/J),
phenylacetate-CoA ligase has been found among the
proteobacteria as well as in gram positive prokaryotes.
In the B-subclass proteobacterium Azoarcus evansii,
phenylacetate-CoA ligase has been shown to be induced
under aerobic and anaerobic growth conditions. It
remains unclear however, whether this induction is due
to the same enzyme or to another isoenzyme restricted to
specific anaerobic growth conditions [Energy metabolism,
Other].
Length = 422
Score = 34.0 bits (78), Expect = 0.004
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 22 QVVGRIKDMIIRGGENIYPKEIEEFI 47
++ GR DM+I G N++P ++EE I
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVI 337
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 33.8 bits (78), Expect = 0.006
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 15 LREDGYGQVVGRIKDMIIRG-GENIYPKEIEEFIQTHPNVLEAYAYG 60
L E+GY + GR K++II G N+ P+ +E +Q P + +A +G
Sbjct: 336 LDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFG 382
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 33.1 bits (75), Expect = 0.011
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 10 QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
+D+ + DG+ R D + GG N+ P+E+E I V EA V
Sbjct: 370 RDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 32.9 bits (76), Expect = 0.014
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 15 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
R DG + +GRI + IRG I EIE+ + HP V EA + E + +
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRG-FRIELGEIEQALLQHPGVREAAV--LVREDAAGDKRLV 424
Query: 74 IKLKENAKLNADDIRTFCK 92
+ L+A ++R
Sbjct: 425 AYVVARGALDAAELRAHLA 443
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 32.6 bits (75), Expect = 0.017
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 23 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 81
+V R+K++I G + P E+E + +HP++ +A + DE GE V ++ ++
Sbjct: 430 IVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR-SNGSE 488
Query: 82 LNADDIRTF 90
+ D+I+ F
Sbjct: 489 ITEDEIKQF 497
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 32.6 bits (74), Expect = 0.017
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 56
R DG + GRI + G I EIE + HP V EA
Sbjct: 896 YRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREA 937
Score = 29.5 bits (66), Expect = 0.20
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 16 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY----------AYGVPDER 65
R DG + +GR+ + G I EIE + HP V EA AY VP++
Sbjct: 3435 RADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE 3494
Query: 66 MGE 68
G+
Sbjct: 3495 AGD 3497
Score = 28.8 bits (64), Expect = 0.36
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 16 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA-------------YAYGV 61
R DG + +GRI + IRG I EIE +Q HP V EA AY V
Sbjct: 2392 RADGVVEYLGRIDHQVKIRGFR-IELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVV 2450
Query: 62 PDERM 66
PD+
Sbjct: 2451 PDDAA 2455
Score = 27.2 bits (60), Expect = 1.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 16 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAY-------------AYGV 61
R DG +GR+ + IRG I EIE ++ HP V EA Y V
Sbjct: 4940 RADGVIDYLGRVDHQVKIRGFR-IELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVV 4998
Query: 62 PDE 64
P +
Sbjct: 4999 PQD 5001
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 32.5 bits (74), Expect = 0.019
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 22 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81
++ GR D +I G N++P +IEE + P + Y + +E+ + ++L + +
Sbjct: 315 RITGRSDDXLIIRGVNVFPSQIEEILVKFPELSPHYQITLERVGHLDELIVEVELSDESA 374
Query: 82 LNADDIRTFCK 92
+ +
Sbjct: 375 DTYIEREKIRR 385
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 31.8 bits (72), Expect = 0.030
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 10 QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 66
QD+ +DG ++GR +++ GG N+ P + + ++ +P V A A + R+
Sbjct: 280 QDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRV-RAAAVRLDGRRL 335
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 31.3 bits (72), Expect = 0.046
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 36/97 (37%)
Query: 16 REDGYGQVVGRIKDMI-IRGGENIY---PKEIEEFIQTHPNVLEA--------------Y 57
DG + +GR D + IRG Y EIE + HP V EA
Sbjct: 338 LPDGNLEFLGRADDQVKIRG----YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLV 393
Query: 58 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 94
AY VP A+L+A ++R F +
Sbjct: 394 AYVVPA--------------AGAELDAAELRAFLAER 416
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 31.0 bits (71), Expect = 0.060
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 11 DQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
D R DG + +GR D + IRG I EIE ++ HP V +A V +E G++
Sbjct: 326 DLVRWRPDGRLEYLGRADDQVKIRG-FRIELGEIEAALRAHPGVADAVVV-VREEGPGDQ 383
Query: 70 --VGISIKLKENAKLNADDIRTF 90
V + K A +A+ +R
Sbjct: 384 RLVAYVV-PKAGAAPDAEALRAA 405
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 30.7 bits (70), Expect = 0.062
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 22 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57
++ GR DM+I G N++P +IE + P V Y
Sbjct: 328 RIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHY 363
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 30.9 bits (70), Expect = 0.076
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 14 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
R DG R+ D + GG + P EIE ++ P V A G R G+ V ++
Sbjct: 415 YTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVA 472
Query: 74 -IKLKENAKLNADDIRTFCK 92
+ + A + + C+
Sbjct: 473 FVIPTDGASPDEAGLMAACR 492
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 30.6 bits (70), Expect = 0.082
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 16 REDGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
+ G +V GR I G I +EIE ++ P V EA VP + V +
Sbjct: 339 YLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKG--EKVVRLV 396
Query: 74 --IKLKENAKLNADDIRTFCK 92
+ KE A L+ ++ K
Sbjct: 397 AFVVGKEGA-LDTKALKKELK 416
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 30.3 bits (69), Expect = 0.11
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEV 70
EDG+ +VGR+K GGE + +EE + + L A A VPDE+ GE++
Sbjct: 380 EDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHA-AVEVPDEKKGEKI 434
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 29.3 bits (66), Expect = 0.20
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 17 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 53
+ G GR + G ++ +E+ HP V
Sbjct: 342 DQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 28.9 bits (65), Expect = 0.28
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-E 68
D F GY + GR D + GG + EIE +VLE A GVP G E
Sbjct: 595 DIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPE 654
Query: 69 EVGISIKLK 77
++ I+ LK
Sbjct: 655 QLVIAAVLK 663
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 28.9 bits (65), Expect = 0.31
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 16 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYA 58
+DG + +GR D + IRG + I EI+ +Q P+V +A
Sbjct: 848 LDDGAVEYLGRSDDQLKIRG-QRIELGEIDRAMQALPDVEQAVT 890
>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase.
Length = 464
Score = 28.8 bits (64), Expect = 0.37
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 27 IKDMIIR---GGENIYPKEIEEFIQTHPNVLEAYAYGVPD 63
IK M +R EN ++I ++ +HP V + Y G+PD
Sbjct: 325 IKTMALRIEKQQEN--ARKIAMYLSSHPRVKKVYYAGLPD 362
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 28.0 bits (63), Expect = 0.66
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 11 DQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA 56
D DG + +GRI D + IRG I EIE + HP V EA
Sbjct: 362 DLVRYLPDGNLEFLGRIDDQVKIRG-YRIELGEIEAALLRHPGVREA 407
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 27.6 bits (62), Expect = 0.86
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 11 DQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNV 53
D+ + EDG+ ++ GR+K++ G+ + P IE + +P+V
Sbjct: 377 DKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHV 420
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 245
Score = 27.1 bits (61), Expect = 1.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 50 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF 90
HPNVLE A G+ +E G G+ ++ K DDIR
Sbjct: 196 HPNVLE--AVGIDEEYPGFAFGLGVERLAMLKYGIDDIRDL 234
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 27.2 bits (61), Expect = 1.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 16 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
R DG + +GRI D + +R G I EIE +++ P V EA + D ++ I
Sbjct: 342 RADGQLEYLGRIDDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYI 400
Query: 75 KLKENAKLNADDIRTFCKGK 94
A ++ +D+R +
Sbjct: 401 VADPGAAIDIEDLRARLATR 420
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed.
Length = 270
Score = 27.1 bits (61), Expect = 1.3
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 25 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY--------GVPDERMGEEVGISI-- 74
GR + + I PK I+EF++T + Y G D + +G+
Sbjct: 81 GRTEPLTI-----YGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGP 135
Query: 75 ---KLKENAKLNADDIRT 89
KLK + +D R
Sbjct: 136 LFGKLKRGEDVTLEDGRI 153
>gnl|CDD|218327 pfam04916, Phospholip_B, Phospholipase B. Phospholipase B (PLB)
catalyzes the hydrolytic cleavage of both acylester
bonds of glycerophospholipids. This family of PLB
enzymes has been identified in mammals, flies and
nematodes but not in yeast. In Drosophila this protein
was named LAMA for laminin ancestor since it is
expressed in the neuronal and glial precursors that
surround the lamina.
Length = 563
Score = 26.7 bits (59), Expect = 1.9
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 9 KQDQFVLRE---DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
K D F G G +G D + G I E+E P ++AYA GV
Sbjct: 42 KSDGFDCTNGLASGKGVAIGYYSDSVNTTGWAIL--EVETNDGHLPGEVQAYAAGV 95
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 26.8 bits (60), Expect = 2.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 15 LREDGYGQVVGR----IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 65
R DG + +GR +K IRG + EIE + HP V A V D
Sbjct: 369 YRPDGTIEFLGRADHQVK---IRG-YRVELGEIEAALARHPGVQRAVVVVVGDGG 419
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 26.7 bits (59), Expect = 2.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 64 ERMGEEVGISIKLKENAKLNADDIRTFCK 92
R + I+ NA LN+D+I FCK
Sbjct: 421 IRYEKFANINK----NADLNSDEIEQFCK 445
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 26.4 bits (59), Expect = 2.1
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 33 RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 88
GG I EI ++ P V ++ G + E + + +KL+E L+ D +
Sbjct: 499 PGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLD-DALV 553
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 26.4 bits (59), Expect = 2.3
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA-----YAYGVPDER 65
D+ L EDG+ + R GGE + +EE + L VPDE+
Sbjct: 1025 DKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAK---ALGGEEVVFAVTAVPDEK 1081
Query: 66 MGEEVGISIKLKENAKLNADDIR 88
GE++ + L + ++++
Sbjct: 1082 KGEKL---VVLHTCGAEDVEELK 1101
>gnl|CDD|182355 PRK10286, PRK10286, O-6-alkylguanine-DNA:cysteine-protein
methyltransferase; Provisional.
Length = 171
Score = 26.0 bits (57), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 1 MDGYACGLKQDQFVLREDGY 20
M GYA G+++ +++LR +GY
Sbjct: 149 MTGYAGGVQRKEWLLRHEGY 168
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 26.0 bits (58), Expect = 3.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 50 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF 90
HPNVLEA P+E G G+ ++ K DIR
Sbjct: 286 HPNVLEAVGI-DPEEYSGFAFGLGLERLAMLKYGIPDIRDL 325
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 25.9 bits (57), Expect = 4.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 64
R DG + +GR+ + IRG I EIE + P V EA P +
Sbjct: 901 RADGVIEYLGRMDHQVKIRG-FRIELGEIEARLLAQPGVREAVVLAQPGD 949
>gnl|CDD|148158 pfam06384, ICAT, Beta-catenin-interacting protein ICAT. This
family consists of several eukaryotic
beta-catenin-interacting (ICAT) proteins. Beta-catenin
is a multifunctional protein involved in both cell
adhesion and transcriptional activation. Transcription
mediated by the beta-catenin/Tcf complex is involved in
embryological development and is upregulated in various
cancers. ICAT selectively inhibits beta-catenin/Tcf
binding in vivo, without disrupting
beta-catenin/cadherin interactions.
Length = 78
Score = 24.8 bits (54), Expect = 4.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 53
L ED Y Q I + + GE + P+E E F++ +
Sbjct: 10 LPEDVYIQQKVEILLALRKLGEKLTPEE-EAFLRANAGA 47
>gnl|CDD|216258 pfam01037, AsnC_trans_reg, AsnC family. The AsnC family is a
family of similar bacterial transcription regulatory
proteins.
Length = 73
Score = 24.4 bits (54), Expect = 4.6
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 41 KEIEEFIQTHPNVLEAYA 58
E + P V+E Y
Sbjct: 12 DAFAEALAAIPEVVECYR 29
>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 350
Score = 24.9 bits (55), Expect = 6.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 60 GVPDERMGEEVGISIKLKENAKLNADDIRTF 90
GV R+GE V + +++ + + DI
Sbjct: 95 GVDTARIGERVLVDPSIRDPPEDDPADIDYI 125
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator
of transcription [Cell division and chromosome
partitioning / Transcription].
Length = 2005
Score = 25.0 bits (54), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 48
LRED Y + +I+ +I + +Y + IQ
Sbjct: 38 LREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQ 71
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing
protein 9. PNPLA9 is a Ca-independent phospholipase
that catalyzes the hydrolysis of glycerophospholipids
at the sn-2 position. PNPLA9 is also known as PLA2G6
(phospholipase A2 group VI) or iPLA2beta. PLA2G6 is
stimulated by ATP and inhibited by bromoenol lactone
(BEL). In humans, PNPLA9 in expressed ubiquitously and
is involved in signal transduction, cell proliferation,
and apoptotic cell death. Mutations in human PLA2G6
leads to infantile neuroaxonal dystrophy (INAD) and
idiopathic neurodegeneration with brain iron
accumulation (NBIA). This family includes PLA2G6 from
Homo sapiens and Rattus norvegicus.
Length = 312
Score = 25.0 bits (55), Expect = 7.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 RIKDMIIRGGENIYPKEIEEFIQTH 50
R+KD + G + +EEF++
Sbjct: 64 RMKDRVFDGSRPYNSEPLEEFLKRE 88
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
Length = 681
Score = 24.8 bits (54), Expect = 8.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 39 YPKEIEEFIQTHPNVLEAYA 58
+P +I E +HP V YA
Sbjct: 500 FPSQINEHWASHPQVFARYA 519
>gnl|CDD|216797 pfam01936, NYN, NYN domain. These domains are found in the
eukaryotic proteins typified by the Nedd4-binding
protein 1 and the bacterial YacP-like proteins
(Nedd4-BP1, YacP nucleases; NYN domains). The NYN
domain shares a common protein fold with two other
previously characterized groups of nucleases, namely
the PIN (PilT N-terminal) and FLAP/5' --> 3'
exonuclease superfamilies. These proteins share a
common set of 4 acidic conserved residues that are
predicted to constitute their active site. Based on the
conservation of the acidic residues and structural
elements Aravind and colleagues suggest that PIN and
NYN domains are likely to bind only a single metal ion,
unlike the FLAP/5' --> 3' exonuclease superfamily,
which binds two metal ions. Based on conserved gene
neighborhoods Aravind and colleagues infer that the
bacterial members are likely to be components of the
processome/degradsome that process tRNAs or ribosomal
RNAs.
Length = 141
Score = 24.5 bits (54), Expect = 8.1
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 35 GENIY------PKEIEEFIQTHPNVLEAYAYGVPDE-------RMGEEVGISIKLKENAK 81
GEN +++ E I++ V+ A AYG + GI ++ K K
Sbjct: 8 GENCPVPAGIDYRKVLEEIKSGGEVVRARAYGNWGDPKLRKFPDALSSTGIPVQHKPLTK 67
Query: 82 L---NADDIR 88
NA D+
Sbjct: 68 GSGKNAVDVG 77
>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase,
TIGR02253. This family of sequences from archaea and
metazoans includes the human uncharacterized protein
CTE7. Pyrococcus species appear to have three different
forms of this enzyme, so it is unclear whether all
members of this family have the same function. This
family is a member of the haloacid dehalogenase (HAD)
superfamily of hydrolases which are characterized by
three conserved sequence motifs. By virtue of an alpha
helical domain in-between the first and second conserved
motif, this family is a member of subfamily IA
(TIGR01549).
Length = 221
Score = 24.7 bits (54), Expect = 8.8
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 28 KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER--------MGEEVGI---SIKL 76
+I R E PK + F+ + + AY P R G +GI + +
Sbjct: 63 DYLIRRLWEEYNPKLVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPV 122
Query: 77 KENAKLNADDIRTF 90
K+ KL +R F
Sbjct: 123 KQWEKLERLGVRDF 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.142 0.415
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,069,625
Number of extensions: 451040
Number of successful extensions: 751
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 178
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)