RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5015
(94 letters)
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 98.2 bits (243), Expect = 3e-26
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
DG+ D V +G +++GR+ DMII GGENI+P EIE + T P V E G+
Sbjct: 378 DGWYR--TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 62 PDERMGEEVGISIKLKENAKLNADDIRTFCKGK 94
D+R G+ V + + L+AD + TFC+
Sbjct: 436 ADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 92.3 bits (228), Expect = 3e-24
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE
Sbjct: 419 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 478
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+ L+ + +I + +
Sbjct: 479 AAVVVLEHGKTMTEKEIVDYVASQ 502
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 89.7 bits (222), Expect = 3e-23
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 496 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555
Query: 71 GISIKLKENAKLNAD---DIRTFCKGK 94
+ L + + + ++R + + +
Sbjct: 556 YAYVTLNHGEEPSPELYAEVRNWVRKE 582
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 88.1 bits (217), Expect = 1e-22
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60
D L DGY V GR KD I RGGE + +E+E + HP V +A
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462
Query: 61 VPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 94
+PD+ +GE + I ++ A A +++ F + +
Sbjct: 463 MPDQFLGERSCVFIIPRDEA-PKAAELKAFLRER 495
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 87.3 bits (215), Expect = 2e-22
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
DQ DG + +GRI + + G + +E+E + H + E D + +
Sbjct: 397 DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 456
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+++ + + +R F +
Sbjct: 457 CAYFVSEKH--IPLEQLRQFSSEE 478
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 86.5 bits (213), Expect = 4e-22
Identities = 22/84 (26%), Positives = 35/84 (41%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 411 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 470
Query: 71 GISIKLKENAKLNADDIRTFCKGK 94
+ + + K
Sbjct: 471 LAVVVPRGEKPTPEELNEHLLKAG 494
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 81.8 bits (201), Expect = 2e-20
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
D +DGY ++GR+ D++ G + EIE I P V E G D+ G+ V
Sbjct: 486 DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 545
Query: 71 GISIKLKENAKLNA 84
+ LK + +
Sbjct: 546 AAFVVLKNKSSWST 559
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
transglycosylase, N-terminal domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 355
Score = 24.8 bits (53), Expect = 2.0
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 20 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57
+ + R+K I E + ++E ++HP + AY
Sbjct: 307 IKEEIKRVKQAIK---EGELWRLVDERARSHPKLYSAY 341
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal
domain {Legionella pneumophila [TaxId: 446]}
Length = 145
Score = 24.2 bits (52), Expect = 2.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 44 EEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
+E + H N + A+ + E+V SI
Sbjct: 102 KELLPKHSNGMRFSAFDGNANLLIEQVYYSI 132
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 24.2 bits (52), Expect = 3.2
Identities = 4/30 (13%), Positives = 15/30 (50%)
Query: 21 GQVVGRIKDMIIRGGENIYPKEIEEFIQTH 50
G+++ + + E+ + ++E F+ +
Sbjct: 182 GELISNFISVAEQFAEDFFAADVESFLNEY 211
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator
RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 69
Score = 23.1 bits (50), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 20 YGQVVGRIKDMIIRG----GENIYPKEIEEFIQTHPN-VLEAYA 58
+V G ++D II G G + +I + N V EA+
Sbjct: 4 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQ 47
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
{Leishmania major [TaxId: 5664]}
Length = 131
Score = 23.2 bits (50), Expect = 5.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 38 IYPKEIEEFIQTHPNVLEAYAYGVP 62
+YP E E FI+ N ++ +P
Sbjct: 93 VYPCETEMFIEGRVNGFKSKMDALP 117
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 23.5 bits (49), Expect = 5.5
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 48 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK--LNADD 86
VL A V E ++K+ + ++
Sbjct: 27 NCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTEN 67
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 23.3 bits (49), Expect = 6.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 75 KLKENAKLNADDIRTFCKG 93
+L++ LN D TF +
Sbjct: 359 RLEKGLPLNKYDRDTFYQM 377
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 23.0 bits (49), Expect = 6.7
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 30 MIIRGGENIY---PKEIEEFIQTHPNVLEAY 57
++ G+ I +E + + + P V+E Y
Sbjct: 221 YVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 251
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 23.1 bits (49), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 30 MIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 62
+II GG + I + QT + L A+ GV
Sbjct: 113 LIIAGGVGEFEAGISKDGQTREHALLAFTLGVR 145
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 382
Score = 23.1 bits (48), Expect = 7.4
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 48 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 81
V +A E V I ++ +N +
Sbjct: 13 ILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTR 46
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia
coli [TaxId: 562]}
Length = 116
Score = 22.8 bits (48), Expect = 8.6
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 45 EFIQTHPNVLEAYAYGVPDERMGEEV 70
EF Q HP L Y + + E +
Sbjct: 2 EFNQFHPTAL--YHPQARNFLLTEAL 25
>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 450
Score = 22.9 bits (49), Expect = 8.7
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 83
YP+EI E I ++ G P ++ + +
Sbjct: 46 YPREINEPIDFVARLVHTLKLGKPAAVPLVNEKMNEWFDKTFRYE 90
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 22.9 bits (48), Expect = 9.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 75 KLKENAKLNADDIRTFCKG 93
+ + A LN D TF G
Sbjct: 337 RFRLGAALNEPDPSTFYGG 355
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 21.9 bits (47), Expect = 9.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 64 ERMGEEVGISIKLKENAKLNADDI 87
ER EE + I + ++ + DI
Sbjct: 46 ERALEEAKVHIDIFKSVEAQVKDI 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.142 0.415
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 383,006
Number of extensions: 17101
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 30
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)