BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5016
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
V + + L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 107 SDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166
SD V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 167 VGISI--KLKENAKLNAYEDKSISSDYHEFE 195
V + +L E +A + SS+ +F+
Sbjct: 444 VTACVVPRLGETLSADALDTFCRSSELADFK 474
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
V + + L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 107 SDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166
SD V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 167 VGISI--KLKENAKLNAYEDKSISSDYHEFE 195
V + +L E +A + SS+ +F+
Sbjct: 444 VTACVVPRLGETLSADALDTFCRSSELADFK 474
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
V + + L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 107 SDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166
SD V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 167 VGISI--KLKENAKLNAYEDKSISSDYHEFE 195
V + +L E +A + SS+ +F+
Sbjct: 444 VTACVVPRLGETLSADALDTFCRSSELADFK 474
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
V + + L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 107 SDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166
SD V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 167 VGISI--KLKENAKLNAYEDKSISSDYHEFE 195
V + +L E +A + SS+ +F+
Sbjct: 444 VTACVVPRLGETLSADALDTFCRSSELADFK 474
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
V + + L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 107 SDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166
SD V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 167 VGISI--KLKENAKLNAYEDKSISSDYHEFE 195
V + +L E +A + SS+ +F+
Sbjct: 444 VTACVVPRLGETLSADALDTFCRSSELADFK 474
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V +G +++GR+ D II GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
V + + L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 107 SDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166
SD V +G +++GR+ D II GGENI+P EIE + T P V E G+ D+R G+
Sbjct: 384 SDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 167 VGISI--KLKENAKLNAYEDKSISSDYHEFE 195
V + +L E +A + SS+ +F+
Sbjct: 444 VTACVVPRLGETLSADALDTFCRSSELADFK 474
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 392 RSIFEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
+S F D F + D GY ++GR KD++I GG N+YPKEIE I P V+E+
Sbjct: 369 KSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESA 428
Query: 445 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
GVP GE V + + A ++ + G+++KF
Sbjct: 429 VIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKF 469
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 38/161 (23%)
Query: 21 AKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
A+V D + +P G G + ++G GYW +KTK D + TG K
Sbjct: 331 ARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGK----- 385
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
+ E GY ++GR KD++I GG N+YPKE
Sbjct: 386 --------------------------------IDERGYVHILGRGKDLVITGGFNVYPKE 413
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
IE I P V+E+ GVP GE V + + A ++
Sbjct: 414 IESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATID 454
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
++GY + R+KDMII GGEN+YP EIE I P V E G+PDE+ G E+ +I +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG-EIAAAIVV 460
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ +++ I +C +++++
Sbjct: 461 ADQNEVSEQQIVEYCGTRLARY 482
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
++GY + R+KDMII GGEN+YP EIE I P V E G+PDE+ GE +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461
Query: 174 KEN 176
+N
Sbjct: 462 DQN 464
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 38/160 (23%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
K+VD R VP G G L RG GY++ + + D ++ YS
Sbjct: 373 KIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDED-----------NYYYSG 421
Query: 82 MAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
++R DG +VVGRIKD I RGGE I +EIE
Sbjct: 422 DLVQRT--------------------------PDGNLRVVGRIKDQINRGGEKIASEEIE 455
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
+ I HP V+ A + DE+ GE+ + + N +L A
Sbjct: 456 KLILLHPEVMHAALVAIVDEQFGEK-SCAFIVSRNPELKA 494
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
DG +VVGRIKD I RGGE I +EIE+ I HP V+ A + DE+ GE+ + +
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK-SCAFIVS 487
Query: 465 ENAKLNADDIR 475
N +L A +R
Sbjct: 488 RNPELKAVVLR 498
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 37/157 (23%)
Query: 21 AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
++V D ++R V G G LL RG + GY++ E+ + D + RTG
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG---------- 412
Query: 81 AMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
D L DGY V GR KD I RGGE + +E+
Sbjct: 413 ---------------------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
E + HP V +A +PD+ +GE + I ++ A
Sbjct: 446 ENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +GE + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476
Query: 462 KLKENAKLNADDIRTFCK 479
++ A A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 37/157 (23%)
Query: 21 AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
++V D ++R V G G LL RG + GY++ E+ + D + RTG
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG---------- 412
Query: 81 AMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
D L DGY V GR KD I RGGE + +E+
Sbjct: 413 ---------------------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
E + HP V +A PD+ +GE + I ++ A
Sbjct: 446 ENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEA 482
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L DGY V GR KD I RGGE + +E+E + HP V +A PD+ +GE + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI 476
Query: 462 KLKENAKLNADDIRTFCK 479
++ A A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 40/148 (27%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
VVD +R +P G GE+++RG GYW + T+ + W TG
Sbjct: 333 AVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTG----------- 380
Query: 82 MAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKE 139
D DGY GR K++I GGEN+YP E
Sbjct: 381 --------------------------DMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE 414
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
+E ++ HP + +A GVPD + E +
Sbjct: 415 VEGALKQHPAIADAVVIGVPDPQWSEAI 442
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 405 DGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
DGY GR K++I GGEN+YP E+E ++ HP + +A GVPD + E +
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV 447
Query: 463 LKENAKLNADDIRTFCKGKVSKF 485
K + AD + F ++++
Sbjct: 448 CKPGESIAADALAEFVASLIARY 470
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 395 FEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 447
F D F + D GY ++GR D++I GG N+YP EIE I P V+E+ G
Sbjct: 372 FRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIG 431
Query: 448 VPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
VP GE V + A ++ + G+++ F
Sbjct: 432 VPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXF 469
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
GFF + D + E GY ++GR D++I GG N+YP EIE I P V+E+ GVP
Sbjct: 376 GFF--ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 160 DERMGEEVGISIKLKENAKLN 180
GE V + A ++
Sbjct: 434 HADFGEGVTAVVVRDXGATID 454
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 395 FEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 447
F D F + D GY ++GR D++I GG N+YP EIE I P V+E+ G
Sbjct: 372 FRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIG 431
Query: 448 VPDERMGEEVGISIKLKEN---AKLNADDIRTFCKGKVSKF 485
VP GE V + L +++ A+++ F +++ F
Sbjct: 432 VPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXF 472
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
GFF + D + E GY ++GR D++I GG N+YP EIE I P V+E+ GVP
Sbjct: 376 GFF--ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 160 DERMGEEVGISIKL 173
GE V + L
Sbjct: 434 HADFGEGVTAFVVL 447
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
GFF + D + E GY ++GR D++I GG N+YP EIE I P V+E+ GVP
Sbjct: 376 GFF--ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 160 DERMGEEVGISIKL 173
GE V + L
Sbjct: 434 HADFGEGVTAFVVL 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 395 FEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 447
F D F + D GY ++GR D++I GG N+YP EIE I P V+E+ G
Sbjct: 372 FRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIG 431
Query: 448 VPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
VP GE V + L + + G+++ F
Sbjct: 432 VPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXF 469
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D + +GY V GR KD I RGGE I +EIE + HP V+ A + DE MGE+
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476
Query: 458 GISIKLKENAKLNADDIRTFCK 479
+ +KE L A +R F +
Sbjct: 477 CAYLVVKE--PLRAVQVRRFLR 496
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
GF+ S D + +GY V GR KD I RGGE I +EIE + HP V+ A +
Sbjct: 411 GFYCS--GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSME 468
Query: 160 DERMGEEVGISIKLKE 175
DE MGE+ + +KE
Sbjct: 469 DELMGEKSCAYLVVKE 484
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21 AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
AKVVD + + + GEL +RG M GY + + T I D WL +G
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 421
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D ED + +V R+K +I G + P E
Sbjct: 422 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
+E + HPN+ +A G+PD+ GE
Sbjct: 454 LESILLQHPNIFDAGVAGLPDDDAGE 479
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 464 KENAKLNADDIRTFCKGKVS 483
+ + +I + +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVT 507
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21 AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
AKVVD + + + GEL +RG M GY + + T I D WL +G
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 421
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D ED + +V R+K +I G + P E
Sbjct: 422 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
+E + HPN+ +A G+PD+ GE
Sbjct: 454 LESILLQHPNIFDAGVAGLPDDDAGE 479
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 464 KENAKLNADDIRTFCKGKVS 483
+ + +I + +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVT 507
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21 AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
AKVVD + + + GEL +RG M GY + + T I D WL +G
Sbjct: 376 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 426
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D ED + +V R+K +I G + P E
Sbjct: 427 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 458
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
+E + HPN+ +A G+PD+ GE
Sbjct: 459 LESILLQHPNIFDAGVAGLPDDDAGE 484
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 464 KENAKLNADDIRTFCKGKVS 483
+ + +I + +V+
Sbjct: 493 EHGKTMTEKEIVDYVASQVT 512
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 38/164 (23%)
Query: 21 AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
AK+VD + + + GEL ++G M GY + + T I D WL +G
Sbjct: 406 AKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSG--------- 456
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D +DGY +V R+K +I G + P E
Sbjct: 457 ----------------------------DIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAE 488
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
+E + HP + +A G+PD GE + L+E + E
Sbjct: 489 LESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQE 532
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
+DGY +V R+K +I G + P E+E + HP + +A G+PD GE + L
Sbjct: 463 KDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVL 522
Query: 464 KENAKLNADDIRTFCKGKVS 483
+E + ++ + G+V+
Sbjct: 523 EEGKTMTEQEVMDYVAGQVT 542
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21 AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
AKVVD + + + GEL +RG M GY + + T I D WL +G
Sbjct: 376 AKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 426
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D ED + +V R+K +I G + P E
Sbjct: 427 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAE 458
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
+E + HPN+ +A G+PD+ GE
Sbjct: 459 LESILLQHPNIFDAGVAGLPDDDAGE 484
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 464 KENAKLNADDIRTFCKGKVS 483
+ + +I + +V+
Sbjct: 493 EHGKTMTEKEIVDYVASQVT 512
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
+ +GY + R KD+II GGENIYP +IE + P + +A G PD+ G+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 455
+ +GY + R KD+II GGENIYP +IE + P + +A G PD+ G+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
Y D + EDGY VGR D+I G + P E+E + HP VLE GVPD
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512
Query: 163 MGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAH-PNRTTPY 211
G+ + +I L + DY +++ + + H N T PY
Sbjct: 513 RGQVIKATIVL--------------TKDYTPSDSLKNELQDHVKNVTAPY 548
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D + EDGY VGR D+I G + P E+E + HP VLE GVPD G+ +
Sbjct: 458 DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517
Query: 458 GISIKLKEN 466
+I L ++
Sbjct: 518 KATIVLTKD 526
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
+ L+ D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493
Query: 163 MGEEV 167
GE V
Sbjct: 494 RGEVV 498
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
+ L+ D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493
Query: 163 MGEEV 167
GE V
Sbjct: 494 RGEVV 498
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 37/147 (25%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXXX 96
GE+ ++G M GY + + TKE I + WL TG
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG-------------------------- 423
Query: 97 XXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
IG++ E+ + +V R+K +I G + P E+E + HP++ +A
Sbjct: 424 -DIGYY----------DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 157 GVPDERMGEEVGISIKLKENAKLNAYE 183
GVPD GE G + L+ + E
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKE 499
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469
+V R+K +I G + P E+E + HP++ +A GVPD GE G + L+ +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 470 NADDIRTFCKGKVS 483
++ + +VS
Sbjct: 496 TEKEVMDYVASQVS 509
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 37/147 (25%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXXX 96
GE+ ++G M GY + + TKE I + WL TG
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG-------------------------- 423
Query: 97 XXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
IG++ E+ + +V R+K +I G + P E+E + HP++ +A
Sbjct: 424 -DIGYY----------DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 157 GVPDERMGEEVGISIKLKENAKLNAYE 183
GVPD GE G + L+ + E
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKE 499
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469
+V R+K +I G + P E+E + HP++ +A GVPD GE G + L+ +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 470 NADDIRTFCKGKVS 483
++ + +VS
Sbjct: 496 TEKEVMDYVASQVS 509
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 37/147 (25%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXXX 96
GE+ ++G M GY + + TKE I + WL TG
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG-------------------------- 423
Query: 97 XXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
IG++ E+ + +V R+K +I G + P E+E + HP++ +A
Sbjct: 424 -DIGYY----------DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 157 GVPDERMGEEVGISIKLKENAKLNAYE 183
GVPD GE G + L+ + E
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKE 499
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469
+V R+K +I G + P E+E + HP++ +A GVPD GE G + L+ +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 470 NADDIRTFCKGKVS 483
++ + +VS
Sbjct: 496 TEKEVMDYVASQVS 509
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 158
GFF + D V DGY ++VGR D+I GG I EIE + HP V EA G
Sbjct: 382 GFFRT--GDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439
Query: 159 PDERMGEEV 167
PD +GE +
Sbjct: 440 PDPDLGERI 448
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 398 DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V DGY ++VGR D+I GG I EIE + HP V EA G PD +GE
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 457 V 457
+
Sbjct: 448 I 448
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 40/165 (24%)
Query: 22 KVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
K+VD +P PGE+ IRG M GY D + T TI + WL TG
Sbjct: 367 KIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDE 426
Query: 81 AMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
+V R+K++I G + P E+
Sbjct: 427 LF-------------------------------------IVDRLKELIKYKGFQVAPAEL 449
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDK 185
E + HP + +A G+ DE G EV ++ +K K A ED+
Sbjct: 450 EALLIAHPEISDAAVVGLKDEDAG-EVPVAFVVKSE-KSQATEDE 492
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK-ENAK 468
+V R+K++I G + P E+E + HP + +A G+ DE G EV ++ +K E ++
Sbjct: 429 IVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQ 487
Query: 469 LNADDIRTFCKGKV 482
D+I+ + +V
Sbjct: 488 ATEDEIKQYISKQV 501
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 39/140 (27%)
Query: 22 KVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+V D R VP GE+ ++G GY+ +E+ T+ + PD + RTG
Sbjct: 367 RVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG--------- 417
Query: 80 SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D V E+GY ++ R+KD+I GGE I +
Sbjct: 418 ----------------------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD 449
Query: 140 IEEFIQTHPNVLEAYAYGVP 159
+E + HP V EA +P
Sbjct: 450 LENALMGHPKVKEAAVVAIP 469
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 388 DSAGRSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 440
+ A RS D F V E+GY ++ R+KD+I GGE I ++E + HP V
Sbjct: 401 EEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKV 460
Query: 441 LEAYAYGVP 449
EA +P
Sbjct: 461 KEAAVVAIP 469
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 38/142 (26%)
Query: 36 PGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXX 95
PGE+ IRGH M GY + T ETI D WL TG
Sbjct: 429 PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELF------------- 475
Query: 96 XXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 155
+V R+K++I G + P E+E + HP++ +
Sbjct: 476 ------------------------IVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAV 511
Query: 156 YGVPDERMGE-EVGISIKLKEN 176
+ +E GE V +K K++
Sbjct: 512 VAMKEEAAGEVPVAFVVKSKDS 533
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 468
+V R+K++I G + P E+E + HP++ + + +E GE V +K K++ +
Sbjct: 476 IVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS-E 534
Query: 469 LNADDIRTFCKGKV 482
L+ DD++ F +V
Sbjct: 535 LSEDDVKQFVSKQV 548
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 388 DSAGRSIFEK-DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 446
D GR F D + E+G+ R+K++I G I P E+E + H V +
Sbjct: 411 DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVI 470
Query: 447 GVPDERMGE--EVGISIKLKENAKLNADDIRTFCKGKVSKF 485
G PDE GE + I +K + K++ +DI + + ++S +
Sbjct: 471 GKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGY 511
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 41/153 (26%)
Query: 26 HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD----RWLRTGRYKKTSFLYSA 81
+ R + G GE++IRG GYW+ E++ +E D ++ RTG
Sbjct: 373 EDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG----------- 421
Query: 82 MAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
+GF + E+G+ R+K++I G I P E+E
Sbjct: 422 ----------------DVGF----------IDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 174
+ H V + G PDE GE I LK
Sbjct: 456 ALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLK 488
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D EDGY + GR+ D++ G + EIE + HP + EA G+P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
+ +
Sbjct: 557 QAI 559
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 115 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEVGISIK 172
DGY V GRIKD+II G NI+P++IE + P + +A A+ E++ ++ I
Sbjct: 450 DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRIS 509
Query: 173 LKE 175
+E
Sbjct: 510 DEE 512
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEVGISIK 462
DGY V GRIKD+II G NI+P++IE + P + +A A+ E++ ++ I
Sbjct: 450 DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRIS 509
Query: 463 LKE 465
+E
Sbjct: 510 DEE 512
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
Y D +DGY ++GR+ D++ G + EIE I P V E G D+
Sbjct: 504 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 563
Query: 163 MGEEVGISIKLKENAKLNAYEDKSI 187
G+ V + LK + + D +
Sbjct: 564 TGQAVAAFVVLKNKSSWSTATDDEL 588
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
F D +DGY ++GR+ D++ G + EIE I P V E G D+ G
Sbjct: 506 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 565
Query: 455 EEVGISIKLKENA 467
+ V + LK +
Sbjct: 566 QAVAAFVVLKNKS 578
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 38/134 (28%)
Query: 25 DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI 84
D VP G G+L I+G + YW + +K++ T W+R+G
Sbjct: 367 DEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSG-------------- 411
Query: 85 RRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 144
D++ +G GR DM+ G+ + P E+E +
Sbjct: 412 -----------------------DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVL 448
Query: 145 QTHPNVLEAYAYGV 158
H VLEA GV
Sbjct: 449 VQHDAVLEAAVVGV 462
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 391 GRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 450
G I D++ +G GR DM+ G+ + P E+E + H VLEA GV
Sbjct: 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464
Query: 451 ERMGEEVGISIKLKENA--KLNADDIRTFCKGKVS 483
+ + + +E A ++ A++++ F K +++
Sbjct: 465 GGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLA 499
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
DG + GRI D + G I +EIE+ +Q +P V +A V D + I+ L
Sbjct: 851 DGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV--VADRHESGDASINAYLV 908
Query: 465 ENAKLNADDIRTFCKGKVSKF 485
+L+A+D++ K ++ +
Sbjct: 909 NRTQLSAEDVKAHLKKQLPAY 929
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 33/164 (20%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM 82
+++ +++ PFG GEL I G GY TKE + +K LY
Sbjct: 790 ILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENP------FKPGETLYRTG 843
Query: 83 AIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE 142
+ R L DG + GRI D + G I +EIE+
Sbjct: 844 DLARWLP-------------------------DGTIEYAGRIDDQVKIRGHRIELEEIEK 878
Query: 143 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKS 186
+Q +P V +A V D + I+ L +L+A + K+
Sbjct: 879 QLQEYPGVKDAVV--VADRHESGDASINAYLVNRTQLSAEDVKA 920
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 408 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 467
++ GR DM+I G N++P +IEE + P + + + + + + ++++L+ A
Sbjct: 328 AKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387
Query: 468 KLNADD 473
+ D
Sbjct: 388 AASVTD 393
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 118 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
++ GR DM+I G N++P +IEE + P + + + + + + ++++L+ A
Sbjct: 328 AKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387
Query: 178 KLNAY--EDKSISSDY-HEFETM 197
+ E +++ + H +TM
Sbjct: 388 AASVTDGERAALARELQHRIKTM 410
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 403 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
R DG + VGR D + G + P E+E + HP V +A A D R+G++ ++
Sbjct: 457 RADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQA-AVLAQDSRLGDKQLVAYV 515
Query: 463 LKENAKLNAD 472
+ E A D
Sbjct: 516 VAERADAPPD 525
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 113 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 172
R DG + VGR D + G + P E+E + HP V +A A D R+G++ ++
Sbjct: 457 RADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQA-AVLAQDSRLGDKQLVAYV 515
Query: 173 LKENA 177
+ E A
Sbjct: 516 VAERA 520
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 120 VVGRIKDMIIRGGENIYPKEIE 141
V GRIKD+II G+N YP++IE
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIE 474
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 410 VVGRIKDMIIRGGENIYPKEIE 431
V GRIKD+II G+N YP++IE
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIE 474
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 128 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 412 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 467
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 418 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 470
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 412 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 467
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 128 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 406 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 461
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 418 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 470
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 406 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 461
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 128 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 403 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 458
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 418 IIRGGENIYPKEI---EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 470
++R GEN+ +I E F P L A+ R GE + I + +E+ +LN
Sbjct: 403 LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELN 458
>pdb|3QNK|A Chain A, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|B Chain B, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|C Chain C, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|D Chain D, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
Length = 517
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 315 VEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSM 365
+E+ F+E+ F DV+ + I P + H ++++P T+ TW + +
Sbjct: 445 IEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRL 495
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 22 KVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIG----------PD-RWLRT 69
++VD + I P GT GE+ + G GYW+ +++ T G P+ WLRT
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464
Query: 70 G 70
G
Sbjct: 465 G 465
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 22 KVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIG----------PD-RWLRT 69
++VD + I P GT GE+ + G GYW+ +++ T G P+ WLRT
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464
Query: 70 G 70
G
Sbjct: 465 G 465
>pdb|4FNQ|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From
Geobacillus Stearothermophilus
Length = 729
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 121 VGRIKDMIIRG-----GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
VGR+ + RG G Y +I + +T +++ D R + G +L
Sbjct: 583 VGRVASLKARGHVAMSGNFGYELDITKLTETEKQMIKQQVAFYKDVRRLVQFGTFYRLLS 642
Query: 176 NAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSY 223
+ N +S+D E Y ++A N Y + DPNQ Y
Sbjct: 643 PFEGNEAAWMFVSADRSEALVAYFRVLAEANAPLSYLRLKGLDPNQDY 690
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 38/95 (40%)
Query: 253 AEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRI 312
+V H+N+ +WE KS+ T + + P T+ R +D + N
Sbjct: 62 VDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEK 121
Query: 313 DDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMN 347
V+Y F + ++L G+ FK +M+
Sbjct: 122 SLVDYRFWGGLVPGNIDHLQDLHDGGVIGFKAFMS 156
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 102 FYSLVSDQFVLREDGYGQVV-GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 160
F + D F + G G VV GR++ II+ GE + I+E ++ +E + + +
Sbjct: 495 FLLPIEDVFSI--SGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDE 552
Query: 161 ERMGEEVGI---SIKLKENAKLNAYEDKSISSDYHEFET-MYDSIMAHPNRTTPYYQWWS 216
R GE VG+ IK +E + + +FE+ +Y R TP+++
Sbjct: 553 GRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFK--G 610
Query: 217 YDPNQSYVTHD 227
Y P + T D
Sbjct: 611 YRPQFYFRTTD 621
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 102 FYSLVSDQFVLREDGYGQVV-GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 160
F + D F + G G VV GR++ II+ GE + I+E ++ +E + + +
Sbjct: 152 FLLPIEDVFSI--SGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDE 209
Query: 161 ERMGEEVGI---SIKLKENAKLNAYEDKSISSDYHEFET-MYDSIMAHPNRTTPYYQWWS 216
R GE VG+ IK +E + + +FE+ +Y R TP+++
Sbjct: 210 GRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFK--G 267
Query: 217 YDPNQSYVTHD 227
Y P + T D
Sbjct: 268 YRPQFYFRTTD 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,127,769
Number of Sequences: 62578
Number of extensions: 665397
Number of successful extensions: 1941
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 185
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)