Query psy5016
Match_columns 485
No_of_seqs 259 out of 2981
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:41:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 8.7E-39 3E-43 340.4 21.0 249 226-485 154-469 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.5E-38 5E-43 341.2 21.9 251 225-485 176-504 (536)
3 3nyq_A Malonyl-COA ligase; A/B 100.0 1.7E-37 5.6E-42 330.8 22.2 250 225-485 153-477 (505)
4 2d1s_A Luciferase, luciferin 4 100.0 1E-37 3.5E-42 335.7 19.5 249 227-485 192-511 (548)
5 3g7s_A Long-chain-fatty-acid-- 100.0 6.8E-38 2.3E-42 337.0 17.4 256 227-485 180-511 (549)
6 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.2E-37 7.6E-42 329.5 20.5 248 226-485 152-473 (504)
7 3etc_A AMP-binding protein; ad 100.0 5.4E-37 1.8E-41 332.3 23.7 189 288-485 348-548 (580)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.6E-37 5.3E-42 333.5 17.7 249 225-485 180-500 (539)
9 3rix_A Luciferase, luciferin 4 100.0 3.7E-38 1.3E-42 339.1 11.5 248 228-485 191-509 (550)
10 3r44_A Fatty acyl COA syntheta 100.0 5.1E-37 1.7E-41 327.9 19.0 246 225-485 168-482 (517)
11 1pg4_A Acetyl-COA synthetase; 100.0 1.5E-36 5.3E-41 333.1 21.5 194 288-485 385-590 (652)
12 3fce_A D-alanine--poly(phospho 100.0 1.3E-36 4.3E-41 324.2 18.8 253 225-485 142-473 (512)
13 3e7w_A D-alanine--poly(phospho 100.0 3.6E-36 1.2E-40 320.6 21.8 252 226-485 142-472 (511)
14 1amu_A GRSA, gramicidin synthe 100.0 3.2E-36 1.1E-40 325.1 21.0 248 226-485 181-498 (563)
15 3o83_A Peptide arylation enzym 100.0 2.2E-37 7.5E-42 332.7 10.0 248 226-485 190-509 (544)
16 1v25_A Long-chain-fatty-acid-C 100.0 7.8E-37 2.7E-41 328.2 13.8 246 227-485 176-505 (541)
17 3c5e_A Acyl-coenzyme A synthet 100.0 7.1E-36 2.4E-40 322.9 18.6 247 225-485 204-531 (570)
18 3l8c_A D-alanine--poly(phospho 100.0 2.7E-36 9.2E-41 322.2 14.5 254 225-485 143-481 (521)
19 4gr5_A Non-ribosomal peptide s 100.0 8.9E-37 3.1E-41 329.8 10.2 253 225-485 212-540 (570)
20 2v7b_A Benzoate-coenzyme A lig 100.0 1.8E-35 6.2E-40 316.5 20.0 247 226-485 182-501 (529)
21 3ipl_A 2-succinylbenzoate--COA 100.0 1.5E-35 5.1E-40 314.9 19.1 241 225-485 161-466 (501)
22 3rg2_A Enterobactin synthase c 100.0 3.7E-35 1.3E-39 320.1 19.7 247 226-485 183-503 (617)
23 1ry2_A Acetyl-coenzyme A synth 100.0 2.8E-35 9.6E-40 323.6 18.9 194 288-485 391-606 (663)
24 3ivr_A Putative long-chain-fat 100.0 1.7E-36 5.7E-41 323.0 8.0 248 224-485 157-470 (509)
25 3tsy_A Fusion protein 4-coumar 100.0 6E-36 2E-40 342.6 11.4 251 225-485 223-551 (979)
26 3ite_A SIDN siderophore synthe 100.0 1.2E-34 4.1E-39 312.3 11.6 188 288-485 301-511 (562)
27 4dg8_A PA1221; ANL superfamily 100.0 6.5E-34 2.2E-38 310.5 15.5 246 226-485 163-482 (620)
28 2vsq_A Surfactin synthetase su 100.0 2.7E-33 9.3E-38 329.0 20.9 252 225-485 605-929 (1304)
29 3kxw_A Saframycin MX1 syntheta 100.0 3.6E-34 1.2E-38 310.0 11.0 252 225-483 165-530 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 5.5E-33 1.9E-37 299.5 15.0 247 225-482 174-526 (576)
31 4gs5_A Acyl-COA synthetase (AM 100.0 1E-31 3.6E-36 274.0 13.8 221 227-485 37-323 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 5E-30 1.7E-34 267.7 14.2 173 288-484 213-403 (436)
33 2y27_A Phenylacetate-coenzyme 100.0 1.9E-29 6.4E-34 263.5 12.2 174 288-484 217-405 (437)
34 2y4o_A Phenylacetate-coenzyme 100.0 4.1E-29 1.4E-33 261.4 13.8 174 288-484 219-409 (443)
35 4fuq_A Malonyl COA synthetase; 99.9 1.5E-26 5.2E-31 246.0 17.6 166 10-212 318-492 (503)
36 3ni2_A 4-coumarate:COA ligase; 99.9 2E-26 6.8E-31 246.9 17.9 167 8-211 351-526 (536)
37 2d1s_A Luciferase, luciferin 4 99.9 9.6E-26 3.3E-30 242.3 15.7 149 10-195 360-511 (548)
38 3etc_A AMP-binding protein; ad 99.9 9.7E-26 3.3E-30 244.0 15.3 165 9-211 390-570 (580)
39 3nyq_A Malonyl-COA ligase; A/B 99.9 1.8E-25 6.1E-30 237.9 16.1 151 10-197 322-479 (505)
40 1amu_A GRSA, gramicidin synthe 99.9 2.1E-25 7.1E-30 240.6 16.0 160 15-213 351-522 (563)
41 1mdb_A 2,3-dihydroxybenzoate-A 99.9 2.2E-25 7.4E-30 239.1 15.6 139 15-191 356-495 (539)
42 1t5h_X 4-chlorobenzoyl COA lig 99.9 3.7E-25 1.3E-29 235.1 16.9 147 11-195 320-473 (504)
43 3rix_A Luciferase, luciferin 4 99.9 2.8E-26 9.7E-31 246.5 7.8 168 9-213 357-534 (550)
44 3g7s_A Long-chain-fatty-acid-- 99.9 1.5E-25 5.1E-30 240.8 12.5 160 15-211 361-533 (549)
45 1v25_A Long-chain-fatty-acid-C 99.9 2.2E-25 7.4E-30 239.2 11.3 161 15-213 360-529 (541)
46 4gr5_A Non-ribosomal peptide s 99.9 4.6E-26 1.6E-30 245.9 5.6 161 15-212 388-563 (570)
47 1pg4_A Acetyl-COA synthetase; 99.9 7.7E-25 2.6E-29 240.2 15.1 164 10-210 433-611 (652)
48 3l8c_A D-alanine--poly(phospho 99.9 3.9E-25 1.3E-29 235.8 11.3 164 15-215 327-507 (521)
49 3o83_A Peptide arylation enzym 99.9 1.7E-25 5.7E-30 240.2 7.5 161 15-213 365-533 (544)
50 3r44_A Fatty acyl COA syntheta 99.9 1.5E-24 5E-29 231.4 14.6 161 11-211 336-504 (517)
51 3e7w_A D-alanine--poly(phospho 99.9 3E-24 1E-28 228.5 16.7 159 15-211 323-494 (511)
52 3c5e_A Acyl-coenzyme A synthet 99.9 1.7E-24 5.8E-29 233.8 14.1 164 10-211 372-553 (570)
53 3fce_A D-alanine--poly(phospho 99.9 3.2E-24 1.1E-28 228.3 15.2 160 15-212 324-496 (512)
54 3ivr_A Putative long-chain-fat 99.9 2.6E-25 8.8E-30 236.6 6.5 161 15-213 326-494 (509)
55 3tsy_A Fusion protein 4-coumar 99.9 7.2E-25 2.5E-29 250.8 8.7 169 9-214 399-576 (979)
56 3t5a_A Long-chain-fatty-acid-- 99.9 1E-24 3.5E-29 229.7 8.9 183 225-413 181-480 (480)
57 3rg2_A Enterobactin synthase c 99.9 9.1E-24 3.1E-28 230.1 16.3 160 15-213 360-527 (617)
58 2v7b_A Benzoate-coenzyme A lig 99.9 6.6E-24 2.3E-28 226.8 13.6 147 10-195 350-501 (529)
59 1ry2_A Acetyl-coenzyme A synth 99.9 8.2E-24 2.8E-28 232.4 11.2 165 10-211 440-628 (663)
60 2vsq_A Surfactin synthetase su 99.9 8.4E-23 2.9E-27 240.0 16.8 162 15-215 782-955 (1304)
61 4dg8_A PA1221; ANL superfamily 99.9 3.9E-23 1.3E-27 225.3 10.9 160 15-214 338-507 (620)
62 3ipl_A 2-succinylbenzoate--COA 99.9 1.8E-22 6.1E-27 214.2 15.3 152 15-212 332-489 (501)
63 3ite_A SIDN siderophore synthe 99.9 6.8E-23 2.3E-27 220.5 8.5 144 15-195 352-511 (562)
64 3gqw_A Fatty acid AMP ligase; 99.9 4.4E-22 1.5E-26 214.3 9.7 137 15-192 390-526 (576)
65 3kxw_A Saframycin MX1 syntheta 99.8 4.4E-22 1.5E-26 215.1 6.1 137 15-192 379-529 (590)
66 3qov_A Phenylacetate-coenzyme 99.7 6.2E-18 2.1E-22 176.1 12.2 128 15-193 261-402 (436)
67 2y4o_A Phenylacetate-coenzyme 99.7 4.6E-18 1.6E-22 177.4 10.9 128 15-192 268-407 (443)
68 2y27_A Phenylacetate-coenzyme 99.7 8.1E-18 2.8E-22 175.2 9.6 128 15-192 266-403 (437)
69 4gs5_A Acyl-COA synthetase (AM 99.6 5.3E-16 1.8E-20 157.7 8.3 139 33-210 195-344 (358)
70 3hgu_A EHPF; phenazine, antibi 99.5 8.2E-14 2.8E-18 141.6 11.9 111 288-423 238-368 (369)
71 3t5a_A Long-chain-fatty-acid-- 99.3 5.4E-13 1.8E-17 140.0 6.1 70 15-123 399-480 (480)
72 3lax_A Phenylacetate-coenzyme 99.2 9.4E-11 3.2E-15 98.1 9.2 60 412-471 1-60 (109)
73 3gxs_A Phenylacetate-coenzyme 99.1 1.5E-10 5E-15 97.0 8.0 70 412-482 1-74 (109)
74 3lax_A Phenylacetate-coenzyme 99.0 4.2E-10 1.4E-14 94.1 8.2 63 122-184 1-63 (109)
75 3gxs_A Phenylacetate-coenzyme 98.9 1.3E-09 4.3E-14 91.2 7.3 67 122-189 1-71 (109)
76 4b2g_A GH3-1 auxin conjugating 97.8 9.7E-05 3.3E-09 79.0 11.9 89 352-464 393-493 (609)
77 4eql_A 4-substituted benzoates 97.7 0.00021 7.3E-09 76.1 12.2 104 311-437 325-447 (581)
78 4epl_A Jasmonic acid-amido syn 97.5 0.00072 2.5E-08 72.0 13.0 89 352-464 388-488 (581)
79 3hgu_A EHPF; phenazine, antibi 97.0 0.0003 1E-08 70.7 3.7 54 16-70 292-349 (369)
80 4b2g_A GH3-1 auxin conjugating 97.0 0.0017 5.8E-08 69.4 9.0 86 103-189 411-511 (609)
81 4eql_A 4-substituted benzoates 96.7 0.0031 1.1E-07 67.2 8.4 49 100-148 396-448 (581)
82 4epl_A Jasmonic acid-amido syn 96.5 0.012 4.1E-07 62.6 11.0 85 101-188 404-500 (581)
83 2cvi_A 75AA long hypothetical 43.6 47 0.0016 24.7 5.7 47 427-483 15-61 (83)
84 2zbc_A 83AA long hypothetical 29.2 76 0.0026 23.2 4.8 47 427-483 15-61 (83)
85 2djw_A Probable transcriptiona 21.4 88 0.003 23.6 3.9 46 427-482 15-60 (92)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.7e-39 Score=340.44 Aligned_cols=249 Identities=18% Similarity=0.160 Sum_probs=210.0
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------- 284 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------- 284 (485)
.++-+.++|||||||.||.++++|.+...........+.++..+..... |++|.++...
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 233 (503)
T 4fuq_A 154 ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDP 233 (503)
T ss_dssp TTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCH
T ss_pred CCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCH
Confidence 4555778999999999999999999988888777776666633322222 6666554320
Q ss_pred --------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC--
Q psy5016 285 --------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF-- 324 (485)
Q Consensus 285 --------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~-- 324 (485)
..++||+++++++.+.+.+.++ ..+++.||+||++.
T Consensus 234 ~~~~~~i~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~~~~ 309 (503)
T 4fuq_A 234 DKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG----HAVLERYGMTETNMNT 309 (503)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS----CCEEECCEETTTEECB
T ss_pred HHHHHHHhhcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC----CCccceEcccccCccc
Confidence 0118899999999999999886 45679999999743
Q ss_pred --CCccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCc
Q psy5016 325 --KDVKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKD 398 (485)
Q Consensus 325 --~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD 398 (485)
.......++++|+|+|+++++| | + +..+++|++|||+|+|+ +++.||| +++.+++.| ..+| ||+|||
T Consensus 310 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~~~TGD 382 (503)
T 4fuq_A 310 SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGP---NVFKGYWRMPEKTKSEF---RDDG-FFITGD 382 (503)
T ss_dssp CCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHTB---CTTS-CEEEEE
T ss_pred ccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECC---chhhhhcCChhhhHhhh---CCCC-CeEcce
Confidence 2223455778999999999999 7 3 56799999999999999 9999999 899999888 5678 999999
Q ss_pred eEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHH
Q psy5016 399 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC 478 (485)
Q Consensus 399 ~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l 478 (485)
+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+++++...+.++++++|
T Consensus 383 l~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 462 (503)
T 4fuq_A 383 LGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGL 462 (503)
T ss_dssp EEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred eEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HhhCCCC
Q psy5016 479 KGKVSKF 485 (485)
Q Consensus 479 ~~~l~~y 485 (485)
+++|++|
T Consensus 463 ~~~L~~~ 469 (503)
T 4fuq_A 463 DGQLAKF 469 (503)
T ss_dssp BTTBCGG
T ss_pred HhhcccC
Confidence 9999876
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.5e-38 Score=341.19 Aligned_cols=251 Identities=16% Similarity=0.133 Sum_probs=210.2
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhc----ccCCCcccccchh-hccchhhhHhh--------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ----KSDIDWEYADKCE-KSMQGWAKTLS-------------- 285 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~----~~~~~~~~~~~~~-pl~~~~~~~~~-------------- 285 (485)
..++-+.++|||||||.||.++++|.+.......... ...++..+...+. |++|.++....
T Consensus 176 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 255 (536)
T 3ni2_A 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255 (536)
T ss_dssp CTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC
T ss_pred CccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc
Confidence 3455567899999999999999999988776655433 2334422222222 78887665300
Q ss_pred ----------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCcccccccc
Q psy5016 286 ----------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEF 319 (485)
Q Consensus 286 ----------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~ 319 (485)
.++||+++++++.+++.+.|+. ..+++.||+
T Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~---~~l~~~YG~ 332 (536)
T 3ni2_A 256 PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQ---ARLGQGYGM 332 (536)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTT---SEEEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCC---CCccccccc
Confidence 0189999999999999998853 456799999
Q ss_pred CCCCC---------CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016 320 QEKMF---------KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV 386 (485)
Q Consensus 320 TEt~~---------~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~ 386 (485)
||++. .......++++|+|+++++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.|
T Consensus 333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~~~~-- 407 (536)
T 3ni2_A 333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD---QIMKGYLNDPEATSRTI-- 407 (536)
T ss_dssp GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB--
T ss_pred cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCc---ccchhhcCChhHHHhhc--
Confidence 99752 1223456789999999999999 74 56799999999999999 9999999 899998888
Q ss_pred cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016 387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 466 (485)
Q Consensus 387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~ 466 (485)
+.+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|+..++
T Consensus 408 -~~~g-~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 485 (536)
T 3ni2_A 408 -DKEG-WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485 (536)
T ss_dssp -CTTS-CEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred -cCCC-ceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC
Confidence 5678 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHhhCCCC
Q psy5016 467 AKLNADDIRTFCKGKVSKF 485 (485)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~y 485 (485)
...+.++|+++|+++|+.|
T Consensus 486 ~~~~~~~l~~~l~~~l~~~ 504 (536)
T 3ni2_A 486 SQATEDEIKQYISKQVIFY 504 (536)
T ss_dssp CCCCHHHHHHHHHTTSCGG
T ss_pred CCCCHHHHHHHHHHhccCC
Confidence 8888999999999999876
No 3
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.7e-37 Score=330.82 Aligned_cols=250 Identities=18% Similarity=0.120 Sum_probs=206.4
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhHh-------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKTL------------------- 284 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~~------------------- 284 (485)
.....+.++|||||||.||.++++|...........+.++++..+...+ .|++|.++...
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~ 232 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS 232 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 3445577899999999999999999998888877776666663333222 26666655420
Q ss_pred -------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016 285 -------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE 321 (485)
Q Consensus 285 -------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE 321 (485)
..++||+++++++.+++.+.++ ..+++.||+||
T Consensus 233 ~~~~~~~i~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~----~~~~~~YG~TE 308 (505)
T 3nyq_A 233 TEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG----RRVIERYGMTE 308 (505)
T ss_dssp HHHHHHHHTTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS----CCCEEEEEETT
T ss_pred hHHHHHHHhhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC----Ceeecccchhh
Confidence 0117899999999999998876 45679999999
Q ss_pred CCC----CCccCccccCcccccCCcEEEE-cC-CCCCCC---CCceEEEEecCCCCccccccc-CcccccccccccCCCC
Q psy5016 322 KMF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTT---RKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAG 391 (485)
Q Consensus 322 t~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~---g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g 391 (485)
++. ........+++|+|+++++++| |+ +.+++. |++|||+|+|+ +++.||| +++.+++.| ..+|
T Consensus 309 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g 382 (505)
T 3nyq_A 309 TLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP---NLFTEYLNRPDATAAAF---TEDG 382 (505)
T ss_dssp TEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEEST---TSCCEETTCHHHHHHTB---CTTS
T ss_pred cccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecC---chhhhhCCChhHhhhhh---cCCC
Confidence 742 2333456789999999999999 65 555654 89999999999 9999999 899999888 5678
Q ss_pred CeEecCceEEEecCCeEEEEecC-CCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC-CCCC
Q psy5016 392 RSIFEKDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-NAKL 469 (485)
Q Consensus 392 ~~~~TGD~~~~d~~G~l~i~GR~-~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~-~~~~ 469 (485)
||+|||+|++|+||+++|+||+ ||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|++.+ +...
T Consensus 383 -~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~ 461 (505)
T 3nyq_A 383 -FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP 461 (505)
T ss_dssp -CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC
T ss_pred -CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC
Confidence 9999999999999999999998 589999999999999999999999999999999999999999999999986 4467
Q ss_pred CHHHHHHHHHhhCCCC
Q psy5016 470 NADDIRTFCKGKVSKF 485 (485)
Q Consensus 470 ~~~~l~~~l~~~l~~y 485 (485)
+.++|+++|+++|++|
T Consensus 462 ~~~~l~~~l~~~L~~~ 477 (505)
T 3nyq_A 462 ALGTLADHVAARLAPH 477 (505)
T ss_dssp CHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHhhCCCC
Confidence 7899999999999876
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1e-37 Score=335.69 Aligned_cols=249 Identities=16% Similarity=0.129 Sum_probs=208.2
Q ss_pred cCCcceeeccccccCCcEEEecccchhhHHHhhhcc---cCCCcccccchh-hccchhhhHh------------------
Q psy5016 227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK---SDIDWEYADKCE-KSMQGWAKTL------------------ 284 (485)
Q Consensus 227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~---~~~~~~~~~~~~-pl~~~~~~~~------------------ 284 (485)
.+-+.++|||||||.||.++++|.+........... ..++..+...+. |++|.++...
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~G~~~v~~~~~~ 271 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFD 271 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHhcCcEEEEcCCCC
Confidence 445677999999999999999999887777665554 445422222222 7777665420
Q ss_pred -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016 285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM 323 (485)
Q Consensus 285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~ 323 (485)
..++||+++++++.+++.+.|+. ..+++.||+||++
T Consensus 272 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~i~~~YG~TE~~ 348 (548)
T 2d1s_A 272 EETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNL---PGVRQGYGLTETT 348 (548)
T ss_dssp HHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC---SCCEEEEECGGGS
T ss_pred HHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCC---Cceeecccccccc
Confidence 00179999999999999998853 4567999999975
Q ss_pred C----CCccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016 324 F----KDVKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF 395 (485)
Q Consensus 324 ~----~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~ 395 (485)
. ........+++|+|+|+++++| | + +..+++|+.|||+++|+ +++.||| +++.+++.| +.+| ||+
T Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~~~ 421 (548)
T 2d1s_A 349 SAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP---MLMKGYVNNPEATKELI---DEEG-WLH 421 (548)
T ss_dssp SEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB---CTTS-CEE
T ss_pred ceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCH---HHhhhhcCChHHhhhcc---cCCc-EEE
Confidence 3 1122356789999999999999 7 3 66799999999999999 9999999 888888888 5678 999
Q ss_pred cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016 396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 475 (485)
Q Consensus 396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 475 (485)
|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+++++...+.++|+
T Consensus 422 TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 501 (548)
T 2d1s_A 422 TGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVM 501 (548)
T ss_dssp EEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred ccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999887778899999
Q ss_pred HHHHhhCCCC
Q psy5016 476 TFCKGKVSKF 485 (485)
Q Consensus 476 ~~l~~~l~~y 485 (485)
++|+++|++|
T Consensus 502 ~~~~~~l~~~ 511 (548)
T 2d1s_A 502 DYVASQVSNA 511 (548)
T ss_dssp HHHHTTSCGG
T ss_pred HHHHHhcccc
Confidence 9999999875
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.8e-38 Score=336.99 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=189.8
Q ss_pred cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------------
Q psy5016 227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS-------------------- 285 (485)
Q Consensus 227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~-------------------- 285 (485)
+..+.++|||||||.||.++++|.+...........++++..+...+. |++|.++....
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 259 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEM 259 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHH
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHH
Confidence 445677999999999999999999988888777776666633332222 77776554300
Q ss_pred -----------------------------------------hhccCCCCCHHHHHHHHhhhhhc-c--cCccccccccCC
Q psy5016 286 -----------------------------------------SEYNSYAGPVTLRRNLIDPLEIV-Q--NRIDDVEYEFQE 321 (485)
Q Consensus 286 -----------------------------------------~l~~g~~~~~~l~~~~~~~~~~~-~--~~~i~~~YG~TE 321 (485)
.++||+++++++.+++.+.+... + ...+++.||+||
T Consensus 260 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 339 (549)
T 3g7s_A 260 LAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339 (549)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGG
T ss_pred HHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccc
Confidence 01789999999999998873211 1 144579999999
Q ss_pred CCC-----CCccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016 322 KMF-----KDVKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR 392 (485)
Q Consensus 322 t~~-----~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~ 392 (485)
++. ........+++|+|+++++++| | + +..+++|+.|||+|+|+ +++.||| +++.+++.|.....+++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~g~~ 416 (549)
T 3g7s_A 340 ACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGP---NIFKGYWKREKENQECWWYDEKGRK 416 (549)
T ss_dssp GSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEEST---TSCSEETTCTTGGGTSEEECTTCCE
T ss_pred cchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECc---chhhhhCCChhhhhhhhhccCCCCc
Confidence 753 1122256789999999999999 6 3 56689999999999999 9999999 89999888732223335
Q ss_pred eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC--CCCC
Q psy5016 393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--AKLN 470 (485)
Q Consensus 393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~--~~~~ 470 (485)
||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+++++ ...+
T Consensus 417 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 496 (549)
T 3g7s_A 417 FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD 496 (549)
T ss_dssp EEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCC
T ss_pred eEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999886 5678
Q ss_pred HHHHHHHHHhhCCCC
Q psy5016 471 ADDIRTFCKGKVSKF 485 (485)
Q Consensus 471 ~~~l~~~l~~~l~~y 485 (485)
.++|+++|+++|++|
T Consensus 497 ~~~l~~~l~~~L~~~ 511 (549)
T 3g7s_A 497 EEDIIEWVRERISGY 511 (549)
T ss_dssp HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHhccCc
Confidence 899999999999986
No 6
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.2e-37 Score=329.49 Aligned_cols=248 Identities=19% Similarity=0.218 Sum_probs=204.5
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCC--Ccccccchh-hccchhhhH-------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDI--DWEYADKCE-KSMQGWAKT------------------- 283 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~--~~~~~~~~~-pl~~~~~~~------------------- 283 (485)
.++.+.++|||||||.||.++++|.+...........+++ ...+...+. |++|.++..
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~ 231 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEF 231 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSC
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCC
Confidence 3455678999999999999999999988877776666665 322222222 777766542
Q ss_pred --------------------------h-----h------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016 284 --------------------------L-----S------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ 320 (485)
Q Consensus 284 --------------------------~-----~------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T 320 (485)
+ . .++||+++++++.+.+.+.++ ..+++.||+|
T Consensus 232 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~----~~~~~~YG~T 307 (504)
T 1t5h_X 232 RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP----GEKVNIYGTT 307 (504)
T ss_dssp CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC----SEEEEEEEET
T ss_pred CHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC----cceeeeeccc
Confidence 0 0 017899999999999999886 3457999999
Q ss_pred CCCCCC-ccCccccCcccccCCcEEEE-cC-C---CCCCCCCceEEEEe-cCCCCccccccc-CcccccccccccCCCCC
Q psy5016 321 EKMFKD-VKNYLITPALKGLYHFKKWM-NP-K---FSTTTRKVALTWPN-SMDSEARIYHYK-KYLREEENITVPDSAGR 392 (485)
Q Consensus 321 Et~~~~-~~~~~~~s~G~p~pg~~v~I-d~-~---~~~~~g~~Gel~v~-g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~ 392 (485)
|+.... ......+++|+|+++++++| |+ + ..+++|+.|||+|+ |+ +++.||| +++.+++.| .+|
T Consensus 308 E~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~---~~~~GY~~~~~~t~~~f----~~g- 379 (504)
T 1t5h_X 308 EAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD---SAFVGYLNQPQATAEKL----QDG- 379 (504)
T ss_dssp TTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCT---TSCCCBTTCHHHHHHHE----ETT-
T ss_pred cccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCc---eeeceecCCchhhhhhh----cCC-
Confidence 973211 11345689999999999999 65 3 66899999999999 88 9999999 888898888 578
Q ss_pred eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016 393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD 472 (485)
Q Consensus 393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 472 (485)
||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+++++...+.+
T Consensus 380 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 459 (504)
T 1t5h_X 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD 459 (504)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHH
T ss_pred ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999887778899
Q ss_pred HHHHHHHh-hCCCC
Q psy5016 473 DIRTFCKG-KVSKF 485 (485)
Q Consensus 473 ~l~~~l~~-~l~~y 485 (485)
+|+++|++ +|++|
T Consensus 460 ~l~~~~~~~~L~~~ 473 (504)
T 1t5h_X 460 ALDTFCRSSELADF 473 (504)
T ss_dssp HHHHHHHTSSCCGG
T ss_pred HHHHHHhhccCccc
Confidence 99999999 89876
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.4e-37 Score=332.33 Aligned_cols=189 Identities=20% Similarity=0.185 Sum_probs=167.2
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEE
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTW 361 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~ 361 (485)
+||+++++++.+++.+.++ ..+++.||+||++. ......+++++|+|+|+++++| |+ +..+++|+.|||+
T Consensus 348 ~gGe~l~~~~~~~~~~~~g----~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~ 423 (580)
T 3etc_A 348 VAGEPLNPEVFNRFLEFTG----IKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIV 423 (580)
T ss_dssp ECSSCCCHHHHHHHHHHHS----CCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred EccCCCCHHHHHHHHHHhC----CeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEE
Confidence 8999999999999999886 45679999999753 1223456789999999999999 65 6779999999999
Q ss_pred EecCC--CCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016 362 PNSMD--SEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 438 (485)
Q Consensus 362 v~g~~--~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~ 438 (485)
|+|+. |.++++||| +++.+++.| .+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||
T Consensus 424 v~~~~g~~~~~~~gY~~~p~~t~~~f----~~g-wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p 498 (580)
T 3etc_A 424 INTMEGKPVGLFVHYGKDPERTEETW----HDG-YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498 (580)
T ss_dssp EECTTCCCTTCCCEETTCHHHHHHHE----ETT-EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred EecCCCCCCeeeccccCCHhHHHhhc----CCC-EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 99721 118999999 999999988 578 9999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HHHHHHHHHhhCCCC
Q psy5016 439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF 485 (485)
Q Consensus 439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~y 485 (485)
+|.+|+|++++++..|+.+.|+|+++++...+ .++|+++|+++|++|
T Consensus 499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~ 548 (580)
T 3etc_A 499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPY 548 (580)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGG
T ss_pred CeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999876544 368999999999876
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.6e-37 Score=333.54 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=206.0
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL------------------- 284 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------- 284 (485)
..++-+.++|||||||.||.++++|.+...........+.++..+...+. |++|.++...
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~ 259 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSP 259 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSS
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCC
Confidence 34555778999999999999999999887777766666666533332222 7777655420
Q ss_pred ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016 285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK 322 (485)
Q Consensus 285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt 322 (485)
..++||+++++++.+++.+.++ ..+++.||+||+
T Consensus 260 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~----~~~~~~YG~TE~ 335 (539)
T 1mdb_A 260 SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG----CTLQQVFGMAEG 335 (539)
T ss_dssp SHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC----SEEEEEEECTTS
T ss_pred CHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC----CcEEEEEcCCCC
Confidence 0018899999999999998876 456799999996
Q ss_pred CCCC-----ccCccccCcccccCCc-EEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016 323 MFKD-----VKNYLITPALKGLYHF-KKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS 393 (485)
Q Consensus 323 ~~~~-----~~~~~~~s~G~p~pg~-~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~ 393 (485)
+... ......+++|+|+++. +++| |+ +..+++|++|||+|+|+ ++++||| +++.|++.| ..+| |
T Consensus 336 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~ 408 (539)
T 1mdb_A 336 LVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGP---YTIRGYYKAEEHNAASF---TEDG-F 408 (539)
T ss_dssp CEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECT---TSCSSCTTCHHHHHHHB---CTTS-C
T ss_pred cccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCc---ccchhhcCChhhhhhhc---cCCC-C
Confidence 4211 1123457899999765 8999 55 67799999999999999 9999999 888888888 5678 9
Q ss_pred EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016 394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD 473 (485)
Q Consensus 394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~ 473 (485)
|+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|++++ ...+.++
T Consensus 409 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~ 487 (539)
T 1mdb_A 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAE 487 (539)
T ss_dssp EEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHH
T ss_pred eecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999988999999999873 4577899
Q ss_pred HHHHHHhh-CCCC
Q psy5016 474 IRTFCKGK-VSKF 485 (485)
Q Consensus 474 l~~~l~~~-l~~y 485 (485)
|+++|+++ |++|
T Consensus 488 l~~~l~~~~L~~~ 500 (539)
T 1mdb_A 488 LKAFLRERGLAAY 500 (539)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHhCCCCcc
Confidence 99999997 8876
No 9
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.7e-38 Score=339.14 Aligned_cols=248 Identities=16% Similarity=0.123 Sum_probs=132.7
Q ss_pred CCcceeeccccccCCcEEEecccchhhHHHhhhcc---cCCCcccccchh-hccchhhhHh-------------------
Q psy5016 228 NGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK---SDIDWEYADKCE-KSMQGWAKTL------------------- 284 (485)
Q Consensus 228 ~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~---~~~~~~~~~~~~-pl~~~~~~~~------------------- 284 (485)
.-+.++|||||||.||.++++|.+........... ..++..+...+. |++|.++...
T Consensus 191 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~ 270 (550)
T 3rix_A 191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEE 270 (550)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred CEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCH
Confidence 34667999999999999999999887776655543 334422222222 7777665430
Q ss_pred ----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016 285 ----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF 324 (485)
Q Consensus 285 ----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~ 324 (485)
..++||+++++++.+++.+.|+. ..+++.||+||++.
T Consensus 271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~v~~~YG~TE~~~ 347 (550)
T 3rix_A 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL---PGIRQGYGLTETTS 347 (550)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC---SCCEEEEECGGGSS
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCC---CccccccCcCcccc
Confidence 00189999999999999999873 34679999999753
Q ss_pred ----CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016 325 ----KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE 396 (485)
Q Consensus 325 ----~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T 396 (485)
........+++|+|+|+++++| |+ +..+++|+.|||+|+|+ +++.||| +++.+++.| +.+| ||+|
T Consensus 348 ~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~~---~~~g-~~~T 420 (550)
T 3rix_A 348 AILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP---MIMSGYVNNPEATNALI---DKDG-WLHS 420 (550)
T ss_dssp EEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB---CTTS-CEEE
T ss_pred ceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCC---CcchhhcCChhhhhhhc---CCCC-Ceec
Confidence 2233456789999999999999 64 56799999999999999 9999999 888888877 5778 9999
Q ss_pred CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT 476 (485)
Q Consensus 397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 476 (485)
||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..|+.++++|+++++...+.++|++
T Consensus 421 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 500 (550)
T 3rix_A 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500 (550)
T ss_dssp EEEEEECTTCCEEEC-----------------------------------------------------------------
T ss_pred CcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887778889999
Q ss_pred HHHhhCCCC
Q psy5016 477 FCKGKVSKF 485 (485)
Q Consensus 477 ~l~~~l~~y 485 (485)
+|+++|++|
T Consensus 501 ~~~~~l~~~ 509 (550)
T 3rix_A 501 YVASQVTTA 509 (550)
T ss_dssp ---------
T ss_pred HHHHhcccc
Confidence 999988764
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.1e-37 Score=327.88 Aligned_cols=246 Identities=18% Similarity=0.194 Sum_probs=203.7
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS------------------ 285 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~------------------ 285 (485)
..+..+.++|||||||.||.++++|.+.......+...++++..+...+. |++|.++....
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~ 247 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDA 247 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCH
Confidence 34556778999999999999999999998888887777777643333332 77776655310
Q ss_pred -----------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016 286 -----------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF 324 (485)
Q Consensus 286 -----------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~ 324 (485)
.++||+++++++.+.+.+. + ..+++.||+||++.
T Consensus 248 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~----~~~~~~YG~TE~~~ 322 (517)
T 3r44_A 248 TKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-N----IEVVQGYALTESCG 322 (517)
T ss_dssp HHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-T----CEEEEEEECGGGTT
T ss_pred HHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-C----CcEEEeeccccccc
Confidence 1189999999999998876 3 45679999999743
Q ss_pred C------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016 325 K------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF 395 (485)
Q Consensus 325 ~------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~ 395 (485)
. .......+++|+|+++++++| |+ +..++.| .|||+|+|+ +++.||| +++.+++.| .+| ||+
T Consensus 323 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~---~v~~GY~~~p~~t~~~f----~~g-~~~ 393 (517)
T 3r44_A 323 GGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSD---ILLKEYWNRPEATRDAF----DNG-WFR 393 (517)
T ss_dssp CEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEET---TSCSEETTCHHHHHHTE----ETT-EEE
T ss_pred ceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCc---chhhhhCCChhhhHhhh----cCC-CEe
Confidence 1 122456789999999999999 65 4556777 899999999 9999999 899999988 578 999
Q ss_pred cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016 396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 475 (485)
Q Consensus 396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 475 (485)
|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.++++| +.++...+.++|+
T Consensus 394 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~ 472 (517)
T 3r44_A 394 TGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIV 472 (517)
T ss_dssp EEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHH
T ss_pred cceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998899888888 5666678899999
Q ss_pred HHHHhhCCCC
Q psy5016 476 TFCKGKVSKF 485 (485)
Q Consensus 476 ~~l~~~l~~y 485 (485)
++|+++|++|
T Consensus 473 ~~l~~~L~~~ 482 (517)
T 3r44_A 473 EYCGTRLARY 482 (517)
T ss_dssp HHHHHHSCGG
T ss_pred HHHHHhCCCC
Confidence 9999999876
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.5e-36 Score=333.11 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=166.5
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceE
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVAL 359 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Ge 359 (485)
++|+++++++++++.+.++... ..+++.||+||++.. .....+++++|+|++|++++| |+ +.+++.|+.||
T Consensus 385 ~gGe~l~~~~~~~~~~~~g~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GE 463 (652)
T 1pg4_A 385 SVGEPINPEAWEWYWKKIGKEK-CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463 (652)
T ss_dssp EESSCCCHHHHHHHHHHTTTTC-SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEE
T ss_pred EecCCCCHHHHHHHHHHhCCCC-CcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEE
Confidence 7899999999999999886322 345799999996421 112356789999999999999 65 67799999999
Q ss_pred EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016 360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 438 (485)
Q Consensus 360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~ 438 (485)
|+|+|++| ++++||| +++.+...+. ...+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||
T Consensus 464 l~i~g~~p-~~~~gY~~~~e~~~~~~~-~~~~g-~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p 540 (652)
T 1pg4_A 464 LVITDSWP-GQARTLFGDHERFEQTYF-STFKN-MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540 (652)
T ss_dssp EEECSCCT-TCCCEETTCHHHHHHHHH-SSSTT-SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHST
T ss_pred EEEccCCC-chhhhhcCCHHHHHhhhh-hcCCC-EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 99999665 9999999 7877766541 12367 9999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HHHHHHHHHhhCCCC
Q psy5016 439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF 485 (485)
Q Consensus 439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~y 485 (485)
+|.+|+|++++++..|+.++|||+++++...+ .++|+++|+++|++|
T Consensus 541 ~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~ 590 (652)
T 1pg4_A 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 590 (652)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred CcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999998999999999998876554 478999999999875
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-36 Score=324.17 Aligned_cols=253 Identities=12% Similarity=-0.000 Sum_probs=203.2
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL------------------- 284 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------- 284 (485)
..+..+.++|||||||.||.++++|.+.........+.++++..+...+. |++|.++...
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 221 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMI 221 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHh
Confidence 34555778999999999999999999988887777776766633322222 6666544320
Q ss_pred -------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016 285 -------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE 321 (485)
Q Consensus 285 -------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE 321 (485)
..+++|+++++++.+++.+.|+. ..+++.||+||
T Consensus 222 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~---~~i~~~YG~TE 298 (512)
T 3fce_A 222 ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPK---ATIMNTYGPTE 298 (512)
T ss_dssp HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTT---CEEEEEECCGG
T ss_pred hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCC---CEEEeCcccCh
Confidence 01189999999999999998853 45679999999
Q ss_pred CCCCCc---------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCC
Q psy5016 322 KMFKDV---------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDS 389 (485)
Q Consensus 322 t~~~~~---------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~ 389 (485)
++.... ......++|+|+++++++| |+ +..+++|+.|||+|+|+ +++.||| +++.+++.|...+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~ 375 (512)
T 3fce_A 299 ATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGP---SVSVGYLGSPELTEKAFTMIDG 375 (512)
T ss_dssp GSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEEST---TSCSCBTTCHHHHHHHEEEETT
T ss_pred hhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEecc---ccChhhcCCchhhhhccccCCC
Confidence 753211 1235678999999999999 55 67799999999999999 9999999 88999888854455
Q ss_pred CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC
Q psy5016 390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469 (485)
Q Consensus 390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~ 469 (485)
++ ||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|+++++...
T Consensus 376 ~~-~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~ 453 (512)
T 3fce_A 376 ER-AYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE 453 (512)
T ss_dssp EE-EEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS
T ss_pred CE-EEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc
Confidence 66 9999999999 799999999999999999999999999999999999999999999998889999999999876544
Q ss_pred CH----HHHHHHHHhhCCCC
Q psy5016 470 NA----DDIRTFCKGKVSKF 485 (485)
Q Consensus 470 ~~----~~l~~~l~~~l~~y 485 (485)
+. ++|+++|+++|++|
T Consensus 454 ~~~~~~~~l~~~l~~~L~~~ 473 (512)
T 3fce_A 454 KEFKLTSAIKKELNERLPNY 473 (512)
T ss_dssp SHHHHHHHHHHHHHTTSCGG
T ss_pred chhhhHHHHHHHHHhhCchh
Confidence 33 57899999999876
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.6e-36 Score=320.64 Aligned_cols=252 Identities=10% Similarity=-0.027 Sum_probs=203.6
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------- 283 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------- 283 (485)
....+.++|||||||.||.++++|.+...........+.++..+...+. |++|.++..
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 221 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVN 221 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhc
Confidence 3455678999999999999999999988877777666666533222222 555544432
Q ss_pred -----------------------h------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016 284 -----------------------L------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK 322 (485)
Q Consensus 284 -----------------------~------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt 322 (485)
+ ..+++|+++++++.+++.+.|+. ..+++.||+||+
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~---~~i~~~YG~TE~ 298 (511)
T 3e7w_A 222 KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPK---AKIFNTYGPTEA 298 (511)
T ss_dssp SHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTT---CEEEECCCCGGG
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCC---cEEEeCcccchh
Confidence 0 01179999999999999999853 456799999997
Q ss_pred CCCCc---------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCC
Q psy5016 323 MFKDV---------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSA 390 (485)
Q Consensus 323 ~~~~~---------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~ 390 (485)
+.... ......++|+|+|+++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.|.. +.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~-~~g 374 (511)
T 3e7w_A 299 TVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP---SVSRGYLGEPELTEKAFFS-HEG 374 (511)
T ss_dssp SSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHHEEE-SSS
T ss_pred eeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecC---ccChhhCCCcccchhhhcC-CCC
Confidence 53211 1234567999999999999 65 67799999999999999 9999999 88988887732 234
Q ss_pred CCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC
Q psy5016 391 GRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 470 (485)
Q Consensus 391 g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~ 470 (485)
++||+|||+|++ +||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|+++++...+
T Consensus 375 ~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~ 453 (511)
T 3e7w_A 375 QWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEK 453 (511)
T ss_dssp SEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSS
T ss_pred CEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccc
Confidence 437999999999 5999999999999999999999999999999999999999999999988899999999998765444
Q ss_pred H----HHHHHHHHhhCCCC
Q psy5016 471 A----DDIRTFCKGKVSKF 485 (485)
Q Consensus 471 ~----~~l~~~l~~~l~~y 485 (485)
. ++|+++|+++|++|
T Consensus 454 ~~~~~~~l~~~l~~~L~~~ 472 (511)
T 3e7w_A 454 EFQLTSAIKKELAASLPAY 472 (511)
T ss_dssp HHHHHHHHHHHHHHHSCGG
T ss_pred hhhHHHHHHHHHHhhCchh
Confidence 3 67899999999875
No 14
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.2e-36 Score=325.09 Aligned_cols=248 Identities=10% Similarity=0.011 Sum_probs=194.4
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------- 283 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------- 283 (485)
..+-+.++|||||||.||.++++|.+...........++++..+...+. |++|..+..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~ 260 (563)
T 1amu_A 181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIN 260 (563)
T ss_dssp TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHT
T ss_pred CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhc
Confidence 3455678999999999999999999887776666666666532222222 555543322
Q ss_pred -----------------------h------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC--
Q psy5016 284 -----------------------L------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-- 326 (485)
Q Consensus 284 -----------------------~------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-- 326 (485)
+ ..++||+++++++.+.+.+. ..+++.||+||++...
T Consensus 261 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~lr~~~~gG~~l~~~~~~~~~~~------~~~~~~YG~TE~~~~~~~ 334 (563)
T 1amu_A 261 DFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEK------VTYINAYGPTETTICATT 334 (563)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTT------SEEEEEECCGGGSSCSEE
T ss_pred CHHHHHHHHHHcCCcEEEeCHHHHHHHHhcccccccEEEEEEecCCHHHHHHHHhC------CeEEEEECcCHHhHhhee
Confidence 0 00178999999999988764 2347999999975311
Q ss_pred -----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc---cCCCCCeEe
Q psy5016 327 -----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV---PDSAGRSIF 395 (485)
Q Consensus 327 -----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~---~~~~g~~~~ 395 (485)
.......++|+|+|+++++| |+ +..+++|++|||+|+|+ +++.||| +++.|++.|.. .+.++ ||+
T Consensus 335 ~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~pe~t~~~f~~~~~~~g~~-w~~ 410 (563)
T 1amu_A 335 WVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGE---GLARGYWKRPELTSQKFVDNPFVPGEK-LYK 410 (563)
T ss_dssp EECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECSSSTTSE-EEE
T ss_pred eecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEech---hhChhhCCCchhhhhhcccCCCCCCCE-EEe
Confidence 11235678999999999999 65 66799999999999999 9999999 88888887731 11234 999
Q ss_pred cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016 396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 475 (485)
Q Consensus 396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 475 (485)
|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+..+ ..+.++|+
T Consensus 411 TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~ 488 (563)
T 1amu_A 411 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLR 488 (563)
T ss_dssp EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHH
T ss_pred cCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888999999999764 46789999
Q ss_pred HHHHhhCCCC
Q psy5016 476 TFCKGKVSKF 485 (485)
Q Consensus 476 ~~l~~~l~~y 485 (485)
++|+++|++|
T Consensus 489 ~~l~~~L~~y 498 (563)
T 1amu_A 489 QFSSEELPTY 498 (563)
T ss_dssp HHHHHHSCGG
T ss_pred HHHHhhCchh
Confidence 9999999876
No 15
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.2e-37 Score=332.72 Aligned_cols=248 Identities=18% Similarity=0.178 Sum_probs=143.4
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------- 284 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------- 284 (485)
.+.-+.++|||||||.||.++++|.+.........+.++++..+...+. |++|.++...
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~ 269 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPE 269 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCC
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCC
Confidence 3455678999999999999999999988888887777777644333333 7777665430
Q ss_pred -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016 285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM 323 (485)
Q Consensus 285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~ 323 (485)
..++||+++++++.+++.+.++ ..+++.||+||++
T Consensus 270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~ 345 (544)
T 3o83_A 270 PLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN----CKLQQVFGMAEGL 345 (544)
T ss_dssp HHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC----SEEEEEEECTTSC
T ss_pred HHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC----CcEEeeecccccc
Confidence 0018999999999999999886 4567999999975
Q ss_pred CC-----CccCccccCccccc-CCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeE
Q psy5016 324 FK-----DVKNYLITPALKGL-YHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSI 394 (485)
Q Consensus 324 ~~-----~~~~~~~~s~G~p~-pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~ 394 (485)
.. ........++|+|+ ++++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.| +.+| ||
T Consensus 346 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~~ 418 (544)
T 3o83_A 346 VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGP---YTFCGYYQSPEHNSQVF---DEDN-YY 418 (544)
T ss_dssp EEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECT---TSCSCCTTCHHHHHHHB---CTTC-CE
T ss_pred ceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecC---CcchhhcCChhhhhhhC---CCCC-Ce
Confidence 31 12223457899997 8999999 65 67799999999999999 9999999 899998888 5678 99
Q ss_pred ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHH
Q psy5016 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDI 474 (485)
Q Consensus 395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l 474 (485)
+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.++|+|+.++ ...+.+++
T Consensus 419 ~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l 497 (544)
T 3o83_A 419 YSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVL 497 (544)
T ss_dssp EEEEEEEECTTSCEEEEEEEC-----------------------------------------------------------
T ss_pred EcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 44567789
Q ss_pred HHHHHh-hCCCC
Q psy5016 475 RTFCKG-KVSKF 485 (485)
Q Consensus 475 ~~~l~~-~l~~y 485 (485)
+++|++ +|++|
T Consensus 498 ~~~~~~~~l~~~ 509 (544)
T 3o83_A 498 RRHLMELGIAQY 509 (544)
T ss_dssp ------------
T ss_pred HHHHHhCCCCcc
Confidence 999988 68775
No 16
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7.8e-37 Score=328.23 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=173.3
Q ss_pred cCCcceeeccccccCCcEEEecccchhhHHHh--hhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016 227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAH--YNQKSDIDWEYADKCE-KSMQGWAKTL------------------- 284 (485)
Q Consensus 227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~--~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------- 284 (485)
...+.++|||||||.||.++++|.+....... ....+.++..+...+. |++|.++...
T Consensus 176 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~ 255 (541)
T 1v25_A 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD 255 (541)
T ss_dssp TSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCS
T ss_pred CCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCC
Confidence 45566899999999999999999987665544 2234444422222222 7777655420
Q ss_pred -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016 285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM 323 (485)
Q Consensus 285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~ 323 (485)
..++||+++++++.+++ +.++ ..+++.||+||++
T Consensus 256 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g----~~~~~~YG~TE~~ 330 (541)
T 1v25_A 256 PASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG----VEVRQGYGLTETS 330 (541)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT----CEEEEEEECGGGS
T ss_pred HHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC----Cceeecccccccc
Confidence 01189999999999999 5565 4567999999975
Q ss_pred CCC----cc-----------CccccCcccccCCcEEEE-cC-CCCCCC--CCceEEEEecCCCCccccccc-Cccccccc
Q psy5016 324 FKD----VK-----------NYLITPALKGLYHFKKWM-NP-KFSTTT--RKVALTWPNSMDSEARIYHYK-KYLREEEN 383 (485)
Q Consensus 324 ~~~----~~-----------~~~~~s~G~p~pg~~v~I-d~-~~~~~~--g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~ 383 (485)
... .. ....+++|+|+|+++++| |+ +..++. +++|||+|+|+ +++.||| +++.|++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~---~v~~GY~~~p~~t~~~ 407 (541)
T 1v25_A 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGP---WITGGYYGNEEATRSA 407 (541)
T ss_dssp SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEEST---TSBSSCBTCHHHHHTT
T ss_pred cceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCc---chhccccCChhhhhhh
Confidence 311 00 023578999999999999 65 556764 36899999999 9999999 89999988
Q ss_pred ccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEE
Q psy5016 384 ITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463 (485)
Q Consensus 384 ~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~ 463 (485)
| ..+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|++
T Consensus 408 f---~~~g-~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~ 483 (541)
T 1v25_A 408 L---TPDG-FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP 483 (541)
T ss_dssp B---CTTS-CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--
T ss_pred c---cCCC-CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEE
Confidence 8 4578 99999999999999999999999999999999999999999999999999999999999899999999998
Q ss_pred cCCCCCCHHHHHHHHHh-hCCCC
Q psy5016 464 KENAKLNADDIRTFCKG-KVSKF 485 (485)
Q Consensus 464 ~~~~~~~~~~l~~~l~~-~l~~y 485 (485)
+ +...+.++++++|++ +|++|
T Consensus 484 ~-~~~~~~~~l~~~~~~~~L~~~ 505 (541)
T 1v25_A 484 R-GEKPTPEELNEHLLKAGFAKW 505 (541)
T ss_dssp ------------------CCCTT
T ss_pred C-CCCCCHHHHHHHHHhccCccc
Confidence 6 445667899999999 88876
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=7.1e-36 Score=322.89 Aligned_cols=247 Identities=14% Similarity=0.037 Sum_probs=196.5
Q ss_pred cccCCcceeeccccccCCcEEEecccchhh--HHHhhhcccCCCcccccchh-hccchhhhH------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAE--VEAHYNQKSDIDWEYADKCE-KSMQGWAKT------------------ 283 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~--~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~------------------ 283 (485)
....-+.++|||||||.||.++++|. ... ..... ..++++..+...+. |++|.++..
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 281 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL 281 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence 34455678999999999999999999 443 22222 34444422211111 444443321
Q ss_pred --------------------------h-----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016 284 --------------------------L-----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ 320 (485)
Q Consensus 284 --------------------------~-----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T 320 (485)
+ ..+++|+++++++.+.+.+.++ ..+++.||+|
T Consensus 282 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g----~~i~~~YG~T 357 (570)
T 3c5e_A 282 PKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG----LDIRESYGQT 357 (570)
T ss_dssp SSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHS----CCCEEEEEET
T ss_pred CCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhC----Cchhhccchh
Confidence 0 0117899999999999998886 4567999999
Q ss_pred CCCC----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEe-----cCCCCccccccc-CcccccccccccC
Q psy5016 321 EKMF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPN-----SMDSEARIYHYK-KYLREEENITVPD 388 (485)
Q Consensus 321 Et~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~-----g~~~~~~~~gY~-~~~~~~~~~~~~~ 388 (485)
|++. ........+++|+|+++++++| |+ +..+++|++|||+|+ |+ +++.||| +++.+++.|
T Consensus 358 E~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~---~v~~GY~~~~~~t~~~f---- 430 (570)
T 3c5e_A 358 ETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPI---GIFSGYVDNPDKTAANI---- 430 (570)
T ss_dssp TTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCT---TCCCEETTCHHHHHHTE----
T ss_pred hcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCc---hhhccccCChhHhhhhh----
Confidence 9742 1222356789999999999999 65 677999999999999 88 9999999 889898888
Q ss_pred CCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC-
Q psy5016 389 SAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA- 467 (485)
Q Consensus 389 ~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~- 467 (485)
.++ ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|+++++.
T Consensus 431 ~~~-~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 509 (570)
T 3c5e_A 431 RGD-FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL 509 (570)
T ss_dssp ETT-EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT
T ss_pred cCC-ccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc
Confidence 467 999999999999999999999999999999999999999999999999999999999998899999999987653
Q ss_pred -CC---CHHHHHHHHHhhCCCC
Q psy5016 468 -KL---NADDIRTFCKGKVSKF 485 (485)
Q Consensus 468 -~~---~~~~l~~~l~~~l~~y 485 (485)
.. ..++|+++|+++|++|
T Consensus 510 ~~~~~~~~~~l~~~l~~~L~~~ 531 (570)
T 3c5e_A 510 SHDPEQLTKELQQHVKSVTAPY 531 (570)
T ss_dssp TSCHHHHHHHHHHHHHHHSCGG
T ss_pred CcchHHHHHHHHHHHHhhCccc
Confidence 11 2468999999999875
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.7e-36 Score=322.19 Aligned_cols=254 Identities=13% Similarity=0.039 Sum_probs=188.1
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcc--cCCCcccccchh-hccchhhhH------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK--SDIDWEYADKCE-KSMQGWAKT------------------ 283 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~--~~~~~~~~~~~~-pl~~~~~~~------------------ 283 (485)
..+.-+.++|||||||.||.++++|.+........... +.+...+...+. |++|..+..
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKE 222 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHH
Confidence 34555778999999999999999999887665544433 233211111111 333322211
Q ss_pred --------------------------h------------------hhhccCCCCCHHHHHHHHhhhhhcccCcccccccc
Q psy5016 284 --------------------------L------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEF 319 (485)
Q Consensus 284 --------------------------~------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~ 319 (485)
+ ..+++|+++++++.+.+.+.|+. ..+++.||+
T Consensus 223 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~i~~~YG~ 299 (521)
T 3l8c_A 223 LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPS---AKIINAYGP 299 (521)
T ss_dssp GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTT---CEEEEEECC
T ss_pred HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCC---ceEEeCcCc
Confidence 0 01178999999999999998853 456799999
Q ss_pred CCCCCCCc---------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc
Q psy5016 320 QEKMFKDV---------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP 387 (485)
Q Consensus 320 TEt~~~~~---------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~ 387 (485)
||++.... ......++|+|+|+++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.|...
T Consensus 300 TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~ 376 (521)
T 3l8c_A 300 TEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGP---AVSKGYLNNPEKTAEAFFTF 376 (521)
T ss_dssp GGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEEST---TSCSCBTTCHHHHHHHEEEE
T ss_pred cHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEeccc---ccChhhcCCchHhhccCcCC
Confidence 99754211 1234568999999999999 65 67799999999999999 9999999 899998887444
Q ss_pred CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCC-CCcEEEEEEEEcCC
Q psy5016 388 DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKEN 466 (485)
Q Consensus 388 ~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~-~g~~~~a~vv~~~~ 466 (485)
+.+| ||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.++.. .++.++|+|+++++
T Consensus 377 ~~~~-~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~ 455 (521)
T 3l8c_A 377 KGQP-AYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDG 455 (521)
T ss_dssp TTEE-EEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTT
T ss_pred CCce-eeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCc
Confidence 5567 999999999999999999999999999999999999999999999999999999998654 46889999999876
Q ss_pred CCCC-------HHHHHHHHHhhCCCC
Q psy5016 467 AKLN-------ADDIRTFCKGKVSKF 485 (485)
Q Consensus 467 ~~~~-------~~~l~~~l~~~l~~y 485 (485)
...+ .++|+++|+++|++|
T Consensus 456 ~~~~~~~~~~~~~~l~~~l~~~l~~~ 481 (521)
T 3l8c_A 456 VKERFDRELELTKAIKASVKDHMMSY 481 (521)
T ss_dssp SGGGCSSHHHHHHHHHHHSGGGSCGG
T ss_pred cccccccchhhHHHHHHHHHhhCccc
Confidence 4321 468999999999875
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.9e-37 Score=329.79 Aligned_cols=253 Identities=12% Similarity=0.001 Sum_probs=132.3
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT-------------------- 283 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~-------------------- 283 (485)
....-+.++|||||||.||.++++|.+....... .....++..+..... |++|..+..
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~ 290 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP 290 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC
Confidence 3455567899999999999999999887544433 333344422221111 554432211
Q ss_pred -----------------------h---------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016 284 -----------------------L---------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK 325 (485)
Q Consensus 284 -----------------------~---------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~ 325 (485)
+ ..++||+++++++.+++.+.++. ..+++.||+||++..
T Consensus 291 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~l~~~YG~TE~~~~ 367 (570)
T 4gr5_A 291 DPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPA---LRLGNGYGPAESMGF 367 (570)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTT---CEEEEEECCGGGCSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccCCHHHHHHHHHhCCC---cEEEEeechhhheee
Confidence 0 01189999999999999888753 456799999997431
Q ss_pred C--------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc-----CC
Q psy5016 326 D--------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP-----DS 389 (485)
Q Consensus 326 ~--------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~-----~~ 389 (485)
. .......++|+|+++++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.|... +.
T Consensus 368 ~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~~~~~~ 444 (570)
T 4gr5_A 368 TTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGA---GLAHGYVSRPALTAERFVADPFAGPGG 444 (570)
T ss_dssp SEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECTTCCSSC
T ss_pred eeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeec---ccchhcCCCchhhhcccccCCCCCCCC
Confidence 1 11234567999999999999 55 67799999999999999 9999999 888888877311 12
Q ss_pred CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC-CC
Q psy5016 390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AK 468 (485)
Q Consensus 390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~-~~ 468 (485)
++ ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+++++ ..
T Consensus 445 ~~-w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~ 523 (570)
T 4gr5_A 445 ER-MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP 523 (570)
T ss_dssp CE-EEEEEEEEEECTTSCEEEEEC--------------------------------------------------------
T ss_pred CE-EEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC
Confidence 35 99999999999999999999999999999999999999999999999999999999998889999999998654 34
Q ss_pred CCHHHHHHHHHhhCCCC
Q psy5016 469 LNADDIRTFCKGKVSKF 485 (485)
Q Consensus 469 ~~~~~l~~~l~~~l~~y 485 (485)
.+.++|+++|+++|+.|
T Consensus 524 ~~~~~l~~~l~~~l~~~ 540 (570)
T 4gr5_A 524 PDAAELRRHVAEALPAY 540 (570)
T ss_dssp -----------------
T ss_pred cCHHHHHHHHHhhCccc
Confidence 67789999999999876
No 20
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.8e-35 Score=316.48 Aligned_cols=247 Identities=14% Similarity=0.067 Sum_probs=189.7
Q ss_pred ccCCcceeeccccccCCcEEEecccch-hhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFS-AEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL------------------- 284 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~-~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------- 284 (485)
.++-+.++|||||||.||.++++|.+. ...........+++..+..... |++|.++...
T Consensus 182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~ 261 (529)
T 2v7b_A 182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERP 261 (529)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCC
T ss_pred CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCC
Confidence 345567899999999999999999887 4444444344445422222222 6666554320
Q ss_pred ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016 285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK 322 (485)
Q Consensus 285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt 322 (485)
..++||+++++++.+.+.+.++ ..+++.||+||+
T Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g----~~i~~~YG~TE~ 337 (529)
T 2v7b_A 262 TADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG----CEILDGIGSTEM 337 (529)
T ss_dssp CHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS----CCEEEEEECTTT
T ss_pred CHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC----CceeeeEchhhc
Confidence 0016899999999999999886 456799999997
Q ss_pred CC----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016 323 MF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF 395 (485)
Q Consensus 323 ~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~ 395 (485)
+. ........+++|+|+++++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.| .++ ||+
T Consensus 338 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f----~~~-~~~ 409 (529)
T 2v7b_A 338 LHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGP---SAAVMYWNNREKSRATF----LGE-WIR 409 (529)
T ss_dssp SSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECT---TCCCCBTTCHHHHHHHE----ETT-EEE
T ss_pred CceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecC---CcccccCCChHHHHHhh----hcC-Ccc
Confidence 42 1122356789999999999999 65 67799999999999999 9999999 888888888 467 999
Q ss_pred cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HH
Q psy5016 396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---AD 472 (485)
Q Consensus 396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~ 472 (485)
|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++. ++..++.++|+|++.++...+ .+
T Consensus 410 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~ 488 (529)
T 2v7b_A 410 SGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAE 488 (529)
T ss_dssp EEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHH
T ss_pred cCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999 666788999999988764322 36
Q ss_pred HHHHHHHhhCCCC
Q psy5016 473 DIRTFCKGKVSKF 485 (485)
Q Consensus 473 ~l~~~l~~~l~~y 485 (485)
+|+++|+++|++|
T Consensus 489 ~l~~~l~~~L~~~ 501 (529)
T 2v7b_A 489 ELKAFVKDRLAPH 501 (529)
T ss_dssp HHHHHHHTTSCTT
T ss_pred HHHHHHHhhcchh
Confidence 8999999999886
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.5e-35 Score=314.90 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=200.4
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS------------------ 285 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~------------------ 285 (485)
..++-+.++|||||||.||.++++|.+...........++++..+...+. |++|.++....
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~ 240 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNA 240 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCH
Confidence 44556778999999999999999999988888777777777633333322 77887665410
Q ss_pred --------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-
Q psy5016 286 --------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD- 326 (485)
Q Consensus 286 --------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~- 326 (485)
.++||+++++++.+++.+ ++ ..+++.||+||++...
T Consensus 241 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~-~~----~~~~~~YG~TE~~~~~~ 315 (501)
T 3ipl_A 241 EQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQ-YN----LPIYNSFGMTETCSQFL 315 (501)
T ss_dssp HHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCCCHHHHHHHHH-TT----CCEEEEEEEGGGTEEEE
T ss_pred HHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCCCHHHHHHHHH-hC----CCEecccccccccccee
Confidence 117999999999998876 33 4467999999975311
Q ss_pred -----ccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCce
Q psy5016 327 -----VKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQ 399 (485)
Q Consensus 327 -----~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~ 399 (485)
.....++++|+|+++++++| |++ +|++|||+|+|+ ++++||| +++.+.. | .+| ||+|||+
T Consensus 316 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~GEl~v~g~---~~~~gY~~~~~~t~~-~----~~g-~~~TGDl 382 (501)
T 3ipl_A 316 TATPEMLHARPDTVGMPSANVDVKIKNPN----KEGHGELMIKGA---NVMNGYLYPTDLTGT-F----ENG-YFNTGDI 382 (501)
T ss_dssp EECHHHHHHCTTCCBEECTTCEEEEESCC----SSCCEEEEEEST---TSCSCCSBSTTCCCS-E----ETT-EEEEEEE
T ss_pred ecCccccccCCCCCCCCCCCcEEEEecCC----CCCccEEEEecc---chhhhhCcChhhcch-h----cCC-ceecCCE
Confidence 11245779999999999999 764 567899999999 9999999 7777766 5 577 9999999
Q ss_pred EEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHH
Q psy5016 400 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 479 (485)
Q Consensus 400 ~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~ 479 (485)
|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++++.. ...+.++|+++|+
T Consensus 383 ~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~ 460 (501)
T 3ipl_A 383 AEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLS 460 (501)
T ss_dssp EEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHH
T ss_pred EEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874 3568899999999
Q ss_pred hhCCCC
Q psy5016 480 GKVSKF 485 (485)
Q Consensus 480 ~~l~~y 485 (485)
++|++|
T Consensus 461 ~~L~~~ 466 (501)
T 3ipl_A 461 KHLAKY 466 (501)
T ss_dssp HHSCGG
T ss_pred hhCccc
Confidence 999876
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.7e-35 Score=320.07 Aligned_cols=247 Identities=19% Similarity=0.198 Sum_probs=204.5
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------- 284 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------- 284 (485)
.++-+.++|||||||.||.++++|.+.........+.+.++..+...+. |++|.++...
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~ 262 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPS 262 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCC
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCC
Confidence 3455678999999999999999999888877776666666533322222 5666554320
Q ss_pred -------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016 285 -------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE 321 (485)
Q Consensus 285 -------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE 321 (485)
..++||+++++++.+++.+.++ ..+++.||+||
T Consensus 263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~----~~~~~~YG~tE 338 (617)
T 3rg2_A 263 ATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG----CQLQQVFGMAE 338 (617)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTC----SEEEEEEEETT
T ss_pred HHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhC----CcEEEEeccCc
Confidence 0117899999999999998876 45679999999
Q ss_pred CCC-----CCccCccccCccccc-CCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016 322 KMF-----KDVKNYLITPALKGL-YHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR 392 (485)
Q Consensus 322 t~~-----~~~~~~~~~s~G~p~-pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~ 392 (485)
++. .........++|+|+ ++++++| |+ +..+++|++|||+|+|+ ++++||| +++.|++.| ..++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~t~~~f---~~~~- 411 (617)
T 3rg2_A 339 GLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGP---YTFRGYYKSPQHNASAF---DANG- 411 (617)
T ss_dssp EEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECS---SSCSCCTTCHHHHHHHB---CTTS-
T ss_pred ceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCc---cccchhcCChhhhhhcc---CCCC-
Confidence 642 112223356899998 7889999 65 67799999999999999 9999999 899999988 5677
Q ss_pred eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016 393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD 472 (485)
Q Consensus 393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 472 (485)
||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++++..+ ..+.+
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~ 489 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV 489 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999876 46789
Q ss_pred HHHHHHHh-hCCCC
Q psy5016 473 DIRTFCKG-KVSKF 485 (485)
Q Consensus 473 ~l~~~l~~-~l~~y 485 (485)
++++++++ +|+.|
T Consensus 490 ~l~~~l~~~~lp~~ 503 (617)
T 3rg2_A 490 QVRRFLREQGIAEF 503 (617)
T ss_dssp HHHHHHHTTTCCGG
T ss_pred HHHHHHHhCCCccc
Confidence 99999998 68865
No 23
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.8e-35 Score=323.63 Aligned_cols=194 Identities=16% Similarity=0.110 Sum_probs=163.0
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-------CccCccccCcccccCCcEEEE-cC--CCCCCC-CC
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-------DVKNYLITPALKGLYHFKKWM-NP--KFSTTT-RK 356 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~-g~ 356 (485)
++|+++++++++++.+.++... ..+++.||+||++.. .....+++++|+|++|++++| |+ +..+++ |+
T Consensus 391 ~gGe~l~~~~~~~~~~~~g~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~ 469 (663)
T 1ry2_A 391 SVGEPIAAEVWEWYSEKIGKNE-IPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA 469 (663)
T ss_dssp ECSSCCCHHHHHHHHHTTSCSS-SCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC
T ss_pred EEcCCCCHHHHHHHHHHhCCCC-ceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc
Confidence 7999999999999999886321 345799999997531 123456789999999999999 65 566777 89
Q ss_pred ceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016 357 VALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 435 (485)
Q Consensus 357 ~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~ 435 (485)
.|||+++|++| ++++||| +++.+.+.|. ...+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.
T Consensus 470 ~Gel~i~g~~p-~~~~gy~~~~~~~~~~~~-~~~~g-~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~ 546 (663)
T 1ry2_A 470 EGVLAVKAAWP-SFARTIWKNHDRYLDTYL-NPYPG-YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII 546 (663)
T ss_dssp EEEEEESSCCT-TSCCEETTCHHHHHHHHT-SSSTT-SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH
T ss_pred ceEEEEecCCC-chhcccccChHHHHHhhh-cCCCC-EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH
Confidence 99999999777 9999999 8887776651 12367 9999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC---C-C------HHHHHHHHHhhCCCC
Q psy5016 436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK---L-N------ADDIRTFCKGKVSKF 485 (485)
Q Consensus 436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~---~-~------~~~l~~~l~~~l~~y 485 (485)
+||+|.+|+|++.+++..|+.++|||+++++.. . + .++|+++|+++|++|
T Consensus 547 ~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~ 606 (663)
T 1ry2_A 547 EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF 606 (663)
T ss_dssp SSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTT
T ss_pred hCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999988999999999987643 2 2 478999999999876
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.7e-36 Score=323.01 Aligned_cols=248 Identities=16% Similarity=0.126 Sum_probs=134.7
Q ss_pred ccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhhh---h------------
Q psy5016 224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLSS---E------------ 287 (485)
Q Consensus 224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~~---l------------ 287 (485)
....+.+.++|||||||.||.++++|.+...........++++..+...+. |++|.++..... +
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~ 236 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFD 236 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccC
Confidence 344556778999999999999999999998888887777777744433333 888877654110 0
Q ss_pred ------------------------------------------ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016 288 ------------------------------------------YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK 325 (485)
Q Consensus 288 ------------------------------------------~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~ 325 (485)
.+|++ ++.+.+.+.++. ..+++.||+||++..
T Consensus 237 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~---~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 237 PAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPN---ATFWATFGQSETSGL 310 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTT---CEEEEEEEEGGGTEE
T ss_pred HHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCC---CeEEcccCccccccc
Confidence 22322 556666666632 456799999997531
Q ss_pred ---CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCce
Q psy5016 326 ---DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQ 399 (485)
Q Consensus 326 ---~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~ 399 (485)
........++|+|+++++++| |+ +..+++|++|||+|+|+ +++.||| +++.+++.| .+| ||+|||+
T Consensus 311 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f----~~g-~~~TGDl 382 (509)
T 3ivr_A 311 STFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGP---TVFKGYWNNAAATQHAF----RNG-WHHTGDM 382 (509)
T ss_dssp EEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEEST---TSCCEETTCHHHHHHHT----GGG-SEEEEEE
T ss_pred cccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecC---CccccccCCHHHhHHHh----hcC-CcccccE
Confidence 112233456999999999999 65 67799999999999999 9999999 899999888 477 9999999
Q ss_pred EEEecCCeEEEEecC--CCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHH
Q psy5016 400 FVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF 477 (485)
Q Consensus 400 ~~~d~~G~l~i~GR~--~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~ 477 (485)
|++|+||+++|+||+ +|+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++++|++.++...+.++|+++
T Consensus 383 ~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 462 (509)
T 3ivr_A 383 GRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEF 462 (509)
T ss_dssp EEECTTSCEEEEEEC-----------------------------------------------------------------
T ss_pred EEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999988999999999988777788899999
Q ss_pred HHhhCCCC
Q psy5016 478 CKGKVSKF 485 (485)
Q Consensus 478 l~~~l~~y 485 (485)
|+++|++|
T Consensus 463 l~~~L~~~ 470 (509)
T 3ivr_A 463 VASLIARY 470 (509)
T ss_dssp --------
T ss_pred HHhhCccc
Confidence 99999876
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=6e-36 Score=342.56 Aligned_cols=251 Identities=15% Similarity=0.132 Sum_probs=144.0
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhc----ccCCCcccccchh-hccchhhhHhh--------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ----KSDIDWEYADKCE-KSMQGWAKTLS-------------- 285 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~----~~~~~~~~~~~~~-pl~~~~~~~~~-------------- 285 (485)
..++-+.++|||||||.||.++++|.+.......... .+.++..+...+. |++|.++....
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 302 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence 3455567899999999999999999988776655443 2334422222222 78887665300
Q ss_pred ----------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCcccccccc
Q psy5016 286 ----------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEF 319 (485)
Q Consensus 286 ----------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~ 319 (485)
.++||+++++++.+++.+.|+. ..+++.||+
T Consensus 303 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~---~~l~~~YG~ 379 (979)
T 3tsy_A 303 PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPN---AKLGQGYGM 379 (979)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTT---CEEEECEEC
T ss_pred CCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCC---CeEEeeech
Confidence 0179999999999999998853 456799999
Q ss_pred CCCCCC---------CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016 320 QEKMFK---------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV 386 (485)
Q Consensus 320 TEt~~~---------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~ 386 (485)
||++.. .......+++|+|+++++++| |+ +..+++|++|||+|+|+ ++++||| +++.+++.|
T Consensus 380 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~---~v~~GY~~~p~~t~~~f-- 454 (979)
T 3tsy_A 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGH---QIMKGYLNNPAATAETI-- 454 (979)
T ss_dssp GGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB--
T ss_pred hhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECC---CccccccCChhhhhhhc--
Confidence 997521 223456789999999999999 74 56799999999999999 9999999 899998888
Q ss_pred cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016 387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 466 (485)
Q Consensus 387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~ 466 (485)
+.+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+++||+..++
T Consensus 455 -~~~g-~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~ 532 (979)
T 3tsy_A 455 -DKDG-WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532 (979)
T ss_dssp -CTTS-CEEEEEEEEECTTSCEEEEEESCC--------------------------------------------------
T ss_pred -cCCC-cEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence 5678 99999999999999999999999999999999999999999999999999999999999889999999998887
Q ss_pred CCCCHHHHHHHHHhhCCCC
Q psy5016 467 AKLNADDIRTFCKGKVSKF 485 (485)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~y 485 (485)
...+.++|+++|+++|+.|
T Consensus 533 ~~~~~~~l~~~l~~~l~~~ 551 (979)
T 3tsy_A 533 SELSEDDVKQFVSKQVVFY 551 (979)
T ss_dssp -------------------
T ss_pred CCCCHHHHHHHHHHhcccc
Confidence 7778889999999999876
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-34 Score=312.34 Aligned_cols=188 Identities=10% Similarity=-0.004 Sum_probs=97.6
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC--CCCCCCCCceE
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVAL 359 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Ge 359 (485)
+||+++++++.+.+.+.++ ..+++.||+||++.. .......+++|+|+++++++| |+ +..+++|++||
T Consensus 301 ~gG~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GE 376 (562)
T 3ite_A 301 VGGEKMTPRTQQIWSSSDR----VALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGE 376 (562)
T ss_dssp EESSCCCHHHHHHHTTCSS----CEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEE
T ss_pred EecCCCCHHHHHHHhhCCC----cEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceE
Confidence 8999999999999988765 456799999997531 223345678999999999999 64 45689999999
Q ss_pred EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC-
Q psy5016 360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH- 437 (485)
Q Consensus 360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~- 437 (485)
|+|+|+ +++.||| +++.++..+ .+.++ ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+|
T Consensus 377 l~v~g~---~v~~GY~~~p~~t~~~~--~~g~~-w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~ 450 (562)
T 3ite_A 377 LVIEGS---LVANGYLNRPDAKGFCD--INGRK-MYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLS 450 (562)
T ss_dssp EEEEST---TSCCEESSCTTCCSEEE--ETTEE-EEEEEEEEEECTTSCEEEEEEC------------------------
T ss_pred EEEecc---ccchhhCCCcccccccc--CCCCE-EEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcC
Confidence 999999 9999999 788777554 23334 999999999999999999999999999999999999999999998
Q ss_pred CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC-------------HHHHHHHHHhhCCCC
Q psy5016 438 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-------------ADDIRTFCKGKVSKF 485 (485)
Q Consensus 438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~-------------~~~l~~~l~~~l~~y 485 (485)
|.+.+++|++.+++..++..+++++..++.... .++|+++|+++|++|
T Consensus 451 ~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y 511 (562)
T 3ite_A 451 PTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAY 511 (562)
T ss_dssp -------------------------------------------------------------
T ss_pred CCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcc
Confidence 888899999999988887777766655433222 248999999999886
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.5e-34 Score=310.45 Aligned_cols=246 Identities=10% Similarity=-0.040 Sum_probs=181.6
Q ss_pred ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016 226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------- 283 (485)
Q Consensus 226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------- 283 (485)
.++-+.++|||||||.||.++++|.+....... ...+.++..+..... |++|..+..
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~ 241 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLD 241 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCC
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCC
Confidence 455677899999999999999999876554433 233333322211111 444443322
Q ss_pred ----------------------h---------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-
Q psy5016 284 ----------------------L---------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK- 325 (485)
Q Consensus 284 ----------------------~---------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~- 325 (485)
+ ..++||+++++++.+.+.+.++. ..+++.||+||++..
T Consensus 242 ~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~ 318 (620)
T 4dg8_A 242 PGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPR---LHLVNGYGPTENTTFT 318 (620)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTT---CEEEEEECCGGGCSCS
T ss_pred HHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCCHHHHHHHHHhCCC---eEEEeeEchhhhhhhe
Confidence 0 01289999999998888877642 456799999996531
Q ss_pred -------CccCccccCcccccCCcEEEE-cC-CCC-CCCCCceEEEEecCCCCccccccc-CcccccccccccCCCC---
Q psy5016 326 -------DVKNYLITPALKGLYHFKKWM-NP-KFS-TTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAG--- 391 (485)
Q Consensus 326 -------~~~~~~~~s~G~p~pg~~v~I-d~-~~~-~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g--- 391 (485)
........++|+|+++++++| |+ +.. +++|++|||+|+|+ ++++||| +++.|++.|......|
T Consensus 319 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~---~v~~GY~~~p~~t~~~f~~~p~~~~~~ 395 (620)
T 4dg8_A 319 CCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGA---GLAQGYRNDAARTRASFVELPYRGRLL 395 (620)
T ss_dssp EEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEET---TCCSEETTCHHHHHHHEEEEEETTEEE
T ss_pred EEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecc---ccccccCCChhhhhhhhccCCCCCCCc
Confidence 112345678999999999999 76 344 78999999999999 9999999 8999998883211111
Q ss_pred CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016 392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 471 (485)
Q Consensus 392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~ 471 (485)
+||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.+ ++++....
T Consensus 396 ~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~~----- 469 (620)
T 4dg8_A 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKAD----- 469 (620)
T ss_dssp EEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECTT-----
T ss_pred eEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecChH-----
Confidence 499999999999999999999999999999999999999999999999999999999887544444 44443321
Q ss_pred HHHHHHHHhhCCCC
Q psy5016 472 DDIRTFCKGKVSKF 485 (485)
Q Consensus 472 ~~l~~~l~~~l~~y 485 (485)
++.++++++|++|
T Consensus 470 -~~~~~l~~~Lp~y 482 (620)
T 4dg8_A 470 -ASPQALLRQLPTW 482 (620)
T ss_dssp -CCCHHHHHHSCGG
T ss_pred -HHHHHHHHhChhh
Confidence 2345566666654
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-33 Score=328.98 Aligned_cols=252 Identities=14% Similarity=0.047 Sum_probs=198.3
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT-------------------- 283 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~-------------------- 283 (485)
...+-+.++|||||||.||+++++|++.... ....+.+.++..+..... ++.|..+..
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~ 683 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTL 683 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGT
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhc
Confidence 3455577899999999999999999887654 333344444322111111 221111100
Q ss_pred --------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016 284 --------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF 324 (485)
Q Consensus 284 --------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~ 324 (485)
+ ..++||+++++++.+.+.+.++. ..++|.||+||++.
T Consensus 684 ~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~ 760 (1304)
T 2vsq_A 684 LDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGP---GKLINCYGPTEGTV 760 (1304)
T ss_dssp TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCCHHHHHHHHHHHCT---TCEEEEECCGGGSS
T ss_pred CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCCCHHHHHHHHHhCCC---CEEEEeEChhHHhH
Confidence 0 01289999999999999888763 45679999999753
Q ss_pred CC--------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--CCCC
Q psy5016 325 KD--------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--DSAG 391 (485)
Q Consensus 325 ~~--------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~~g 391 (485)
.. .......++|+|+++++++| |+ +..+|.|++|||+|+|+ ++++||+ +++.|++.|... .+++
T Consensus 761 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~T~~~f~~~p~~~g~ 837 (1304)
T 2vsq_A 761 FATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGM---GVSKGYVNRADLTKEKFIENPFKPGE 837 (1304)
T ss_dssp CSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEET---TCCCCBTTCHHHHHHHEEECTTSTTC
T ss_pred HheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEecc---ccCccccCCcccchhhhccCCCCCCC
Confidence 11 12234568999999999999 65 67799999999999999 9999999 899998888421 1334
Q ss_pred CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016 392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 471 (485)
Q Consensus 392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~ 471 (485)
+||+|||+|++++||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|||+.++ ..+.
T Consensus 838 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~ 915 (1304)
T 2vsq_A 838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSA 915 (1304)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCH
T ss_pred eeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCH
Confidence 59999999999999999999999999999999999999999999999999999999998888899999999764 4678
Q ss_pred HHHHHHHHhhCCCC
Q psy5016 472 DDIRTFCKGKVSKF 485 (485)
Q Consensus 472 ~~l~~~l~~~l~~y 485 (485)
++|+++|+++|++|
T Consensus 916 ~~l~~~l~~~Lp~y 929 (1304)
T 2vsq_A 916 EDVKAHLKKQLPAY 929 (1304)
T ss_dssp HHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhChHh
Confidence 99999999999976
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.6e-34 Score=310.02 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=197.5
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL------------------- 284 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------- 284 (485)
....-+.++|||||||.||.++++|.+...........++++..+...+. |++|.++...
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 244 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFS 244 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHH
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHH
Confidence 34555778999999999999999999998888877777776633332222 6666655420
Q ss_pred ------------------------------------------------hhhccCCCCCHHHHHHHHhhhhhccc--Cccc
Q psy5016 285 ------------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQN--RIDD 314 (485)
Q Consensus 285 ------------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~--~~i~ 314 (485)
..++||+++++++.+++.+.|+..+. ..++
T Consensus 245 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~ 324 (590)
T 3kxw_A 245 FLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFY 324 (590)
T ss_dssp HHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE
T ss_pred HHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccc
Confidence 00168999999999999999875432 3568
Q ss_pred cccccCCCCCC-------------------------------CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEE
Q psy5016 315 VEYEFQEKMFK-------------------------------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALT 360 (485)
Q Consensus 315 ~~YG~TEt~~~-------------------------------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel 360 (485)
+.||+||++.. ........++|+|+++ ++| |+ +..+++|++|||
T Consensus 325 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl 402 (590)
T 3kxw_A 325 PCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEI 402 (590)
T ss_dssp EEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEE
T ss_pred cccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEE
Confidence 99999996431 1112345789999999 666 54 567999999999
Q ss_pred EEecCCCCccccccc-Cccccccccccc--CC--CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHH-
Q psy5016 361 WPNSMDSEARIYHYK-KYLREEENITVP--DS--AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI- 434 (485)
Q Consensus 361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~--~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l- 434 (485)
+|+|+ +++.||| +++.|++.|... +. +.+||+|||+|++| +|+|+|+||+||+||++|++|+|.|||++|
T Consensus 403 ~v~g~---~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~ 478 (590)
T 3kxw_A 403 WVQSN---SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLM 478 (590)
T ss_dssp EEEST---TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHH
T ss_pred EEeCC---cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHH
Confidence 99999 9999999 899998887321 11 22399999999999 999999999999999999999999999999
Q ss_pred HcCCCcc--EEEEEEEeCCCCCcEEEEEEEEcCCC--CCCHHHHHHHHHhhCC
Q psy5016 435 QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVS 483 (485)
Q Consensus 435 ~~~~~V~--ea~vv~~~~~~~g~~~~a~vv~~~~~--~~~~~~l~~~l~~~l~ 483 (485)
..||.|. +|+|++++++. ++.+++++++.++. ..+.++|.++|+++|+
T Consensus 479 ~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~ 530 (590)
T 3kxw_A 479 HSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVY 530 (590)
T ss_dssp HSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHH
Confidence 7899999 89999999875 77888999988753 3455788888887765
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5.5e-33 Score=299.53 Aligned_cols=247 Identities=15% Similarity=0.116 Sum_probs=187.2
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcc-cCCCcccccchh-hccchhhhHh------------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK-SDIDWEYADKCE-KSMQGWAKTL------------------ 284 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~-~~~~~~~~~~~~-pl~~~~~~~~------------------ 284 (485)
..+..+.++|||||||.||.++++|............. ..++..+..... |++|.++...
T Consensus 174 ~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~ 253 (576)
T 3gqw_A 174 VPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQ 253 (576)
T ss_dssp CTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHH
T ss_pred CCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchh
Confidence 34556778999999999999999999887776665433 455422222222 6666544320
Q ss_pred ---------------------------------------------h----hhccCCCCCHHHHHHHHhhhhhcc--cCcc
Q psy5016 285 ---------------------------------------------S----SEYNSYAGPVTLRRNLIDPLEIVQ--NRID 313 (485)
Q Consensus 285 ---------------------------------------------~----~l~~g~~~~~~l~~~~~~~~~~~~--~~~i 313 (485)
. ..+||+++++++.+++.+.|+..+ ...+
T Consensus 254 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (576)
T 3gqw_A 254 DFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTF 333 (576)
T ss_dssp HHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred HhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccc
Confidence 0 016899999999999999886432 2456
Q ss_pred ccccccCCCCCCCcc--------------------------------CccccCcccccCCcEEEE-cC-CCCCCCCCceE
Q psy5016 314 DVEYEFQEKMFKDVK--------------------------------NYLITPALKGLYHFKKWM-NP-KFSTTTRKVAL 359 (485)
Q Consensus 314 ~~~YG~TEt~~~~~~--------------------------------~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Ge 359 (485)
++.||+||++..... .....++|+|+|+++++| |+ +..+++|++||
T Consensus 334 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GE 413 (576)
T 3gqw_A 334 MPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGH 413 (576)
T ss_dssp EEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEE
T ss_pred cccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEE
Confidence 799999997431100 011238999999999999 55 67799999999
Q ss_pred EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016 360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 438 (485)
Q Consensus 360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~ 438 (485)
|+|+|+ ++++||| +++.+.+.+ .+| ||+|||+|++ +||+|+|+||+||+||++|++|+|.|||++|.+||
T Consensus 414 l~v~g~---~~~~gY~~~~~~~~~~~----~~g-~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p 484 (576)
T 3gqw_A 414 ICISGP---SLMSGYFGDQVSQDEIA----ATG-WLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEP 484 (576)
T ss_dssp EEEEST---TSCCCBTTCHHHHHHHH----HHS-CEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSS
T ss_pred EEEeCc---cccccccCCcccccccc----CCC-eeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCc
Confidence 999999 9999999 776666554 577 9999999999 79999999999999999999999999999999999
Q ss_pred CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhC
Q psy5016 439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482 (485)
Q Consensus 439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l 482 (485)
+|.+++|++..++. +...++++...+.....+++.++|+++|
T Consensus 485 ~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l 526 (576)
T 3gqw_A 485 EIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARI 526 (576)
T ss_dssp SCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHH
Confidence 99999999998763 3455555554433334467777777765
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=1e-31 Score=273.97 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=178.1
Q ss_pred cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------------
Q psy5016 227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS-------------------- 285 (485)
Q Consensus 227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~-------------------- 285 (485)
+..++++|||||||.||.++++|.+...+.....+.++++..+...+. |++|.++....
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~~ 116 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANPL 116 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCTT
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccHH
Confidence 456778999999999999999999988888888888888744433333 88888776510
Q ss_pred ------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----C
Q psy5016 286 ------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----K 325 (485)
Q Consensus 286 ------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~ 325 (485)
.++||+++++++.+++.+. + ..+++.||+||++. .
T Consensus 117 ~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~-~----~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 117 AGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDL-A----MPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp TTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTC-S----SCEEEEEECGGGSSEEEEE
T ss_pred HHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheeccccc-C----ceEEeccccccccceeecc
Confidence 1189999999999998763 3 44679999999753 2
Q ss_pred CccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec
Q psy5016 326 DVKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE 404 (485)
Q Consensus 326 ~~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~ 404 (485)
.......+++|.+.||+++.+ ++ |||+++|+ . ..+| ||+|||+|++|+
T Consensus 192 ~~~~~~~g~~~~~~pgv~~~~~~~---------Gel~~~g~---~------------------~~~g-~~~TGDlg~~d~ 240 (358)
T 4gs5_A 192 ALNGPEASELYVFLPGIQYGVDER---------GCLHISGA---V------------------TNGQ-TVQTNDLVEIHG 240 (358)
T ss_dssp ECSSTTCCSCEEECTTCEEEECTT---------SEEEEESG---G------------------GTTC-CEEEEEEEEECS
T ss_pred cccccccceeeccCCCeEEEecCc---------CceEEecc---c------------------ccCc-ceecCCcccccc
Confidence 333455678999999999998 43 89999998 1 1467 999999999999
Q ss_pred CCeEEEEecCCCeEEECcEeeChHHHHHHH---HcCCCccEEEEE-EEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHh
Q psy5016 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI---QTHPNVLEAYAY-GVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 480 (485)
Q Consensus 405 ~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l---~~~~~V~ea~vv-~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~ 480 (485)
+| ++++||+||+||++|++|+|.|||++| ..||+|.+|+|+ +.+++..|+.++|+|+...+ ....++|+++|++
T Consensus 241 ~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~ 318 (358)
T 4gs5_A 241 NA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIRS 318 (358)
T ss_dssp SE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHHH
T ss_pred Cc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHHh
Confidence 88 566799999999999999999999877 468999998887 67888889999998876543 3455789999999
Q ss_pred hCCCC
Q psy5016 481 KVSKF 485 (485)
Q Consensus 481 ~l~~y 485 (485)
+|++|
T Consensus 319 ~L~~~ 323 (358)
T 4gs5_A 319 RVSTY 323 (358)
T ss_dssp HSCGG
T ss_pred hCCCC
Confidence 99876
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.96 E-value=5e-30 Score=267.72 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=143.1
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC-C-CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEE
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM-F-KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWP 362 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~-~-~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v 362 (485)
+||+++++++.+++.+.|+ ..+++.||+||++ . ...........+.|.+++.++| |+ +..+++|+.|||+|
T Consensus 213 ~gGe~l~~~~~~~~~~~~g----~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v 288 (436)
T 3qov_A 213 IGAEPHTDEQRRKIERMLN----VKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVL 288 (436)
T ss_dssp EESSCCCHHHHHHHHHHHT----SEEEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEE
T ss_pred EeCCcCCHHHHHHHHHHhC----ccEEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEE
Confidence 8899999999999999886 4567999999973 2 1111112234677778999999 73 66799999999999
Q ss_pred ecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCC------e---EEEEecCCCeEEECcEeeChHHHHHH
Q psy5016 363 NSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEF 433 (485)
Q Consensus 363 ~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G------~---l~i~GR~~d~I~~~G~~v~p~eIE~~ 433 (485)
+|+ +...+ +++ ||+|||+|++|++| + ++|+||.||+||++|++|+|.|||++
T Consensus 289 ~~~--------------~~~~~----~~~-~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~ 349 (436)
T 3qov_A 289 TTL--------------DREMM----PLI-RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKI 349 (436)
T ss_dssp EES--------------SCCSS----CCC-SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHH
T ss_pred ecc--------------CcCCc----eEE-EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHH
Confidence 998 23344 567 99999999999998 5 69999999999999999999999999
Q ss_pred HHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC----HHHHHHHHHhhCCC
Q psy5016 434 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN----ADDIRTFCKGKVSK 484 (485)
Q Consensus 434 l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~----~~~l~~~l~~~l~~ 484 (485)
|.+||+|.+++|++.+++..++.++++|+++ +...+ .+++.++|+++|+.
T Consensus 350 l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~ 403 (436)
T 3qov_A 350 LVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKD 403 (436)
T ss_dssp HTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999988889999999998 55554 56788888777653
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=1.9e-29 Score=263.49 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=141.7
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCC-CC-CC-ccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEE
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK-MF-KD-VKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTW 361 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt-~~-~~-~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~ 361 (485)
+||+++++++.+.+.+.|+ ..+++.||+||+ +. .. .........+.|.+++.++| |+ +..+++|+.|||+
T Consensus 217 ~gGe~l~~~~~~~~~~~~g----~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~ 292 (437)
T 2y27_A 217 FGAEPWTNDMRVAIEQRMG----IDAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELV 292 (437)
T ss_dssp EESSCCCHHHHHHHHHHHT----SEEEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEE
T ss_pred EcCccCCHHHHHHHHHHHC----cCEEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEE
Confidence 8999999999999998886 446799999997 32 11 11111113566778999999 74 6779999999999
Q ss_pred EecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec-CCeE-----EEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016 362 PNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ 435 (485)
Q Consensus 362 v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~-~G~l-----~i~GR~~d~I~~~G~~v~p~eIE~~l~ 435 (485)
|+|. +.+.| +++ ||+|||+|++|+ +|++ +|+||.||+||++|++|+|.|||++|.
T Consensus 293 v~~~--------------t~~~~----~~~-~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~ 353 (437)
T 2y27_A 293 FTSL--------------TKEAL----PII-RYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL 353 (437)
T ss_dssp EEES--------------SCSSS----CCC-SEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT
T ss_pred EecC--------------CcCCc----hhh-eeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH
Confidence 9997 23344 467 999999999999 6986 899999999999999999999999999
Q ss_pred cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC---CCHHHHHHHHHhhCCC
Q psy5016 436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVSK 484 (485)
Q Consensus 436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~ 484 (485)
+||+|.+++|++++++..++.++++|+++++.. .+.++++++|+++|++
T Consensus 354 ~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~ 405 (437)
T 2y27_A 354 KQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKS 405 (437)
T ss_dssp TCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHH
Confidence 999999999999998777889999999887643 2346788888887654
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=4.1e-29 Score=261.36 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=140.3
Q ss_pred ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC-CCCc--cCccccCcccccCCcEEEE-cC--CCCCCCCCceEEE
Q psy5016 288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM-FKDV--KNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTW 361 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~-~~~~--~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~ 361 (485)
+||+++++++.+++.+.|+ ..+++.||+||++ .... ........+.|.+++.++| |+ +..+++|+.|||+
T Consensus 219 ~gGe~l~~~~~~~~~~~~g----~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~ 294 (443)
T 2y4o_A 219 FGAEPWTQALRNEVETRVG----IDALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELV 294 (443)
T ss_dssp EESSCCCHHHHHHHHHHHT----CEEEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEE
T ss_pred ECCCcCCHHHHHHHHHHhC----cCEEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEE
Confidence 8999999999999999886 4467999999963 2111 1111112555678999999 74 6779999999999
Q ss_pred EecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC-CeE-----EEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016 362 PNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ 435 (485)
Q Consensus 362 v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~-G~l-----~i~GR~~d~I~~~G~~v~p~eIE~~l~ 435 (485)
|+|. +++.| +++ ||+|||+|++|++ |++ +|+||.||+||++|++|+|.|||++|.
T Consensus 295 v~~~--------------t~~~~----p~~-~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~ 355 (443)
T 2y4o_A 295 FTSL--------------TKEAM----PVI-RYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV 355 (443)
T ss_dssp EEES--------------SCSSS----CCS-SEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH
T ss_pred EeCC--------------CcccC----hhh-eeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH
Confidence 9997 23344 467 9999999999999 987 899999999999999999999999999
Q ss_pred cCCCccEEEEEEEeCCCCCcEEEEEEEEcC--CC---CCCHHHHHHHHHhhCCC
Q psy5016 436 THPNVLEAYAYGVPDERMGEEVGISIKLKE--NA---KLNADDIRTFCKGKVSK 484 (485)
Q Consensus 436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~--~~---~~~~~~l~~~l~~~l~~ 484 (485)
+||+|.++++++++++..++.++++|++++ +. ..+.++++++|+++|++
T Consensus 356 ~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 409 (443)
T 2y4o_A 356 ALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409 (443)
T ss_dssp TSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHH
Confidence 999999999999988777889999999875 22 23446788888877653
No 35
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.94 E-value=1.5e-26 Score=245.96 Aligned_cols=166 Identities=28% Similarity=0.420 Sum_probs=149.4
Q ss_pred CcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhh
Q psy5016 10 QFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRR 86 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~ 86 (485)
..+++ |+|+++++|+| ++|+++|.|++|||+|+|++++.|||++|+.|+++|..++||+||
T Consensus 318 ~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG---------------- 381 (503)
T 4fuq_A 318 VPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG---------------- 381 (503)
T ss_dssp CTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEE----------------
T ss_pred cCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcc----------------
Confidence 34555 99999999999 779999999999999999999999999999999999989999999
Q ss_pred hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016 87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (485)
|++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..++.
T Consensus 382 ---------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 440 (503)
T 4fuq_A 382 ---------------------DLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEG 440 (503)
T ss_dssp ---------------------EEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred ---------------------eeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCcc
Q psy5016 167 VGISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYY 212 (485)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~ 212 (485)
+.++|+++++...+.++++++|+++...+.. .++++.++++++..+
T Consensus 441 ~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~ 492 (503)
T 4fuq_A 441 VTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKN 492 (503)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHH
T ss_pred eEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHH
Confidence 9999999998888999999999887655433 345556666655443
No 36
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.94 E-value=2e-26 Score=246.89 Aligned_cols=167 Identities=28% Similarity=0.395 Sum_probs=149.5
Q ss_pred CCCcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016 8 DLQFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI 84 (485)
Q Consensus 8 ~~~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~ 84 (485)
+...+++ |+|+++++|+| ++|++++.|++|||+|+|++++.|||++|+.|++.|..++||+||
T Consensus 351 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TG-------------- 416 (536)
T 3ni2_A 351 DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG-------------- 416 (536)
T ss_dssp CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE--------------
T ss_pred cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcc--------------
Confidence 3455666 99999999999 559999999999999999999999999999999999889999999
Q ss_pred hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016 85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 164 (485)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~ 164 (485)
|++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|
T Consensus 417 -----------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 417 -----------------------DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp -----------------------EEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred -----------------------cEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 165 EEVGISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
+.++++|+..++...+.++|+++|+++...+.. .++++.+.++++..
T Consensus 474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R 526 (536)
T 3ni2_A 474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILR 526 (536)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCH
T ss_pred ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeH
Confidence 999999999988888999999999887655533 34555555555543
No 37
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.93 E-value=9.6e-26 Score=242.35 Aligned_cols=149 Identities=28% Similarity=0.399 Sum_probs=138.8
Q ss_pred CcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhh
Q psy5016 10 QFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRR 86 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~ 86 (485)
..+++ |+|+++++|+| ++|++++.|++|||+|+|+++|.|||++++.|++.|.+++||+||
T Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG---------------- 423 (548)
T 2d1s_A 360 KPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG---------------- 423 (548)
T ss_dssp CTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE----------------
T ss_pred CCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEcc----------------
Confidence 34455 99999999999 679999999999999999999999999999999999889999999
Q ss_pred hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016 87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (485)
|++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.
T Consensus 424 ---------------------Dl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~ 482 (548)
T 2d1s_A 424 ---------------------DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL 482 (548)
T ss_dssp ---------------------EEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred ---------------------CEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCee
Confidence 99999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016 167 VGISIKLKENAKLNAYEDKSISSDYHEFE 195 (485)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 195 (485)
+.++|+++++...+.++|+++|+++...+
T Consensus 483 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~ 511 (548)
T 2d1s_A 483 PGAVVVLESGKNMTEKEVMDYVASQVSNA 511 (548)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHTTSCGG
T ss_pred eEEEEEEcCCCCCCHHHHHHHHHHhcccc
Confidence 99999998887788899999998765444
No 38
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.93 E-value=9.7e-26 Score=244.03 Aligned_cols=165 Identities=25% Similarity=0.364 Sum_probs=138.4
Q ss_pred CCcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc-----cccccccCCCcccccccccCCCceecCcccccchhhhH
Q psy5016 9 LQFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG-----HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81 (485)
Q Consensus 9 ~~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~-----~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~ 81 (485)
...+++ |+|+++++|+|++|++++.|++|||+|+| +++|.|||++|++|++.|. +|||+||
T Consensus 390 ~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TG----------- 457 (580)
T 3etc_A 390 PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTG----------- 457 (580)
T ss_dssp CCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEE-----------
T ss_pred CCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecC-----------
Confidence 345566 99999999999999999999999999997 7899999999999999996 8999999
Q ss_pred HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 161 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~ 161 (485)
|++++++||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++
T Consensus 458 --------------------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~ 511 (580)
T 3etc_A 458 --------------------------DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDP 511 (580)
T ss_dssp --------------------------EEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred --------------------------cEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecc
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEEcCCcCCC---HHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 162 RMGEEVGISIKLKENAKLN---AYEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
..|+.+.++|+++++...+ .++|+++|+++...+.. ++++++++++++..
T Consensus 512 ~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R 570 (580)
T 3etc_A 512 VRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570 (580)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred CCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence 9999999999999876544 36788888776554433 34555555555543
No 39
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.93 E-value=1.8e-25 Score=237.90 Aligned_cols=151 Identities=26% Similarity=0.346 Sum_probs=133.5
Q ss_pred CcCcc--ccCCcEEEEEcCCCccCCC---CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016 10 QFSTL--SSSSFQAKVVDHNNRIVPF---GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI 84 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d~~~~~~~~---g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~ 84 (485)
..+++ |+|+++++|+|++|++++. |++|||+|+|++++.|||++|+.|+++|.+++||+||
T Consensus 322 ~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TG-------------- 387 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG-------------- 387 (505)
T ss_dssp CTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEE--------------
T ss_pred CCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccC--------------
Confidence 34555 9999999999999999886 8999999999999999999999999999989999999
Q ss_pred hhhcchhhhhhhhhcccccccccceEEEecCccEEEeecc-CceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016 85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 163 (485)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~-~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~ 163 (485)
|++++++||+++++||+ ||+||++|++|+|.|||++|.+||+|.+++|++++++..
T Consensus 388 -----------------------Dl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~ 444 (505)
T 3nyq_A 388 -----------------------DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444 (505)
T ss_dssp -----------------------EEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred -----------------------CeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCC
Confidence 99999999999999998 599999999999999999999999999999999999999
Q ss_pred CceEEEEEEEcC-CcCCCHHHHHHhhcccchhhHh
Q psy5016 164 GEEVGISIKLKE-NAKLNAYEDKSISSDYHEFETM 197 (485)
Q Consensus 164 ~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 197 (485)
++.++++|++.+ +...+.++|+++|+++...+..
T Consensus 445 g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~ 479 (505)
T 3nyq_A 445 GERIVAWIVPADPAAPPALGTLADHVAARLAPHKR 479 (505)
T ss_dssp EEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGS
T ss_pred CcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcC
Confidence 999999999986 4567788999999887655533
No 40
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.93 E-value=2.1e-25 Score=240.59 Aligned_cols=160 Identities=21% Similarity=0.254 Sum_probs=142.7
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC------CCceecCcccccchhhhHHHHhhhc
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP------DRWLRTGRYKKTSFLYSAMAIRRKL 88 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------~~~~~tg~~~~~~~~~~~~~~~~~~ 88 (485)
|+|+++++|+|++|++++.|++|||+|+|+++|.|||++|+.|+++|.. ++||+||
T Consensus 351 p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TG------------------ 412 (563)
T 1amu_A 351 PIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG------------------ 412 (563)
T ss_dssp ECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE------------------
T ss_pred eeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecC------------------
Confidence 9999999999999999999999999999999999999999999998853 4699999
Q ss_pred chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016 89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 168 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++
T Consensus 413 -------------------Dlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 473 (563)
T 1amu_A 413 -------------------DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC 473 (563)
T ss_dssp -------------------EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEE
T ss_pred -------------------CEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCccc
Q psy5016 169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQ 213 (485)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~ 213 (485)
++|++.+ ..+.++|+++|+++...+.. +++++.++++++....
T Consensus 474 a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~ 522 (563)
T 1amu_A 474 AYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQ 522 (563)
T ss_dssp EEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGG
T ss_pred EEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHh
Confidence 9998764 46788999999887655433 4566667777665544
No 41
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.92 E-value=2.2e-25 Score=239.08 Aligned_cols=139 Identities=34% Similarity=0.511 Sum_probs=131.1
Q ss_pred ccCC-cEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016 15 SSSS-FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93 (485)
Q Consensus 15 ~~~~-~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~ 93 (485)
|+++ .+++|+|++|++++.|++|||+|+|+++|+|||++|+.|+++|..++||+||
T Consensus 356 p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG----------------------- 412 (539)
T 1mdb_A 356 PMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG----------------------- 412 (539)
T ss_dssp ESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE-----------------------
T ss_pred ccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecC-----------------------
Confidence 7765 4899999999999999999999999999999999999999999889999999
Q ss_pred hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016 94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173 (485)
Q Consensus 94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.++|++
T Consensus 413 --------------Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~ 478 (539)
T 1mdb_A 413 --------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIP 478 (539)
T ss_dssp --------------EEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred --------------ceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999889999999998
Q ss_pred cCCcCCCHHHHHHhhccc
Q psy5016 174 KENAKLNAYEDKSISSDY 191 (485)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~ 191 (485)
++ ...+.++|+++|+++
T Consensus 479 ~~-~~~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 479 RD-EAPKAAELKAFLRER 495 (539)
T ss_dssp SS-SCCCHHHHHHHHHHT
T ss_pred CC-CCCCHHHHHHHHHhC
Confidence 74 457788999999875
No 42
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.92 E-value=3.7e-25 Score=235.14 Aligned_cols=147 Identities=31% Similarity=0.471 Sum_probs=136.6
Q ss_pred cCcc--ccCCcEEEEEcCCC---ccCCCCCceEEEEE-ccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016 11 FSTL--SSSSFQAKVVDHNN---RIVPFGTPGELLIR-GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI 84 (485)
Q Consensus 11 ~~~~--~~~~~~~~i~d~~~---~~~~~g~~Gel~i~-~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~ 84 (485)
.+++ |.++++++|+|+++ ++++.|++|||+|+ |+++|.|||++|+.|++.| .++||+||
T Consensus 320 ~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TG-------------- 384 (504)
T 1t5h_X 320 TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTS-------------- 384 (504)
T ss_dssp SSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEE--------------
T ss_pred CCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccC--------------
Confidence 3444 99999999999888 99999999999999 8999999999999999999 58999999
Q ss_pred hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016 85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 164 (485)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~ 164 (485)
|++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..|
T Consensus 385 -----------------------Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 441 (504)
T 1t5h_X 385 -----------------------DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441 (504)
T ss_dssp -----------------------EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSS
T ss_pred -----------------------cEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEcCCcCCCHHHHHHhhcc-cchhh
Q psy5016 165 EEVGISIKLKENAKLNAYEDKSISSD-YHEFE 195 (485)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~ 195 (485)
+.+.++|+++++...+.++|+++|++ +...+
T Consensus 442 ~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~ 473 (504)
T 1t5h_X 442 QSVTACVVPRLGETLSADALDTFCRSSELADF 473 (504)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHTSSCCGG
T ss_pred cEEEEEEEecCCcCcCHHHHHHHHhhccCccc
Confidence 99999999998877888999999986 54443
No 43
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.92 E-value=2.8e-26 Score=246.47 Aligned_cols=168 Identities=26% Similarity=0.362 Sum_probs=71.0
Q ss_pred CCcCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016 9 LQFSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR 85 (485)
Q Consensus 9 ~~~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~ 85 (485)
...+++ |+|+++++|+|+ +|++++.|++|||+|+|+++|.|||++++.|++.|..++||+||
T Consensus 357 ~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TG--------------- 421 (550)
T 3rix_A 357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------------- 421 (550)
T ss_dssp CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE---------------
T ss_pred CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecC---------------
Confidence 344556 999999999994 59999999999999999999999999999999999889999999
Q ss_pred hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016 86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165 (485)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~ 165 (485)
|++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+
T Consensus 422 ----------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~ 479 (550)
T 3rix_A 422 ----------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE 479 (550)
T ss_dssp ----------------------EEEEECTTCCEEEC--------------------------------------------
T ss_pred ----------------------cEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCcCCCHHHHHHhhcccchhh-------HhhhhhhcCCCCCCCccc
Q psy5016 166 EVGISIKLKENAKLNAYEDKSISSDYHEFE-------TMYDSIMAHPNRTTPYYQ 213 (485)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~I~~~~n~~l~~~~ 213 (485)
.+.++|+++++...+.++++++|+++...+ ...++++.++++++....
T Consensus 480 ~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~ 534 (550)
T 3rix_A 480 LPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARK 534 (550)
T ss_dssp -------------------------------------------------------
T ss_pred eEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHH
Confidence 999999999887788889999888765432 235667777777665544
No 44
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.92 E-value=1.5e-25 Score=240.81 Aligned_cols=160 Identities=26% Similarity=0.385 Sum_probs=119.1
Q ss_pred ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCccccccccc--CCC--ceecCcccccchhhhHHHHhhhcc
Q psy5016 15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG--PDR--WLRTGRYKKTSFLYSAMAIRRKLK 89 (485)
Q Consensus 15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~~--~~~tg~~~~~~~~~~~~~~~~~~~ 89 (485)
|+|+++++|+| ++|++++.|++|||+|+|++++.|||++++.|+++|. .++ ||+||
T Consensus 361 p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TG------------------- 421 (549)
T 3g7s_A 361 PMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG------------------- 421 (549)
T ss_dssp ECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEE-------------------
T ss_pred cCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccC-------------------
Confidence 99999999999 7899999999999999999999999999999999884 466 99999
Q ss_pred hhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEE
Q psy5016 90 PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 169 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.+
T Consensus 422 ------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 483 (549)
T 3g7s_A 422 ------------------DVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKA 483 (549)
T ss_dssp ------------------EEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEE
T ss_pred ------------------cEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC--cCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 170 SIKLKEN--AKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 170 ~~~~~~~--~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
+|+++++ ...+.++|+++|+++...+.. +++++.++++++..
T Consensus 484 ~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R 533 (549)
T 3g7s_A 484 FIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLR 533 (549)
T ss_dssp EEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------
T ss_pred EEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeH
Confidence 9999887 567889999999887655433 34455555555543
No 45
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.92 E-value=2.2e-25 Score=239.17 Aligned_cols=161 Identities=25% Similarity=0.338 Sum_probs=109.6
Q ss_pred ccCCcEEEEEcCCCccCCC--CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016 15 SSSSFQAKVVDHNNRIVPF--GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ 92 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~ 92 (485)
|+|+++++|+|++|++++. +++|||+|+||+++.|||++|+.|+++|.+++||+||
T Consensus 360 p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TG---------------------- 417 (541)
T 1v25_A 360 PIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG---------------------- 417 (541)
T ss_dssp ECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEE----------------------
T ss_pred cCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcC----------------------
Confidence 9999999999999999985 3689999999999999999999999999889999999
Q ss_pred hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016 93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 172 (485)
Q Consensus 93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+.++|+
T Consensus 418 ---------------Dlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv 482 (541)
T 1v25_A 418 ---------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV 482 (541)
T ss_dssp ---------------EEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-
T ss_pred ---------------CEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCcCCCHHHHHHhhcc-cchhh------HhhhhhhcCCCCCCCccc
Q psy5016 173 LKENAKLNAYEDKSISSD-YHEFE------TMYDSIMAHPNRTTPYYQ 213 (485)
Q Consensus 173 ~~~~~~~~~~~l~~~l~~-~~~~~------~~~~~I~~~~n~~l~~~~ 213 (485)
++ +...+.++++++|++ +...+ ...++++.++++++....
T Consensus 483 ~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~ 529 (541)
T 1v25_A 483 PR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRA 529 (541)
T ss_dssp -------------------CCCTTTSCSBC--------------CCTT
T ss_pred EC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHH
Confidence 86 445566788888876 43332 234556666666555433
No 46
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.92 E-value=4.6e-26 Score=245.93 Aligned_cols=161 Identities=24% Similarity=0.231 Sum_probs=69.0
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCC--------CceecCcccccchhhhHHHHhh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD--------RWLRTGRYKKTSFLYSAMAIRR 86 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~--------~~~~tg~~~~~~~~~~~~~~~~ 86 (485)
|+|+++++|+|++|++++.|++|||+|+|+++|.|||++++.|+++|..+ +||+||
T Consensus 388 p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TG---------------- 451 (570)
T 4gr5_A 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTG---------------- 451 (570)
T ss_dssp ECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEE----------------
T ss_pred eeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCC----------------
Confidence 99999999999999999999999999999999999999999999998543 799999
Q ss_pred hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016 87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (485)
|++++++||+++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.
T Consensus 452 ---------------------Dlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~ 510 (570)
T 4gr5_A 452 ---------------------DLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQ 510 (570)
T ss_dssp ---------------------EEEEECTTSCEEEEEC-------------------------------------------
T ss_pred ---------------------CeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEEEcCC-cCCCHHHHHHhhcccchhhH------hhhhhhcCCCCCCCcc
Q psy5016 167 VGISIKLKEN-AKLNAYEDKSISSDYHEFET------MYDSIMAHPNRTTPYY 212 (485)
Q Consensus 167 ~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~------~~~~I~~~~n~~l~~~ 212 (485)
+.++|+++++ ...+.++|+++|+++...+. ..+++++++++++...
T Consensus 511 ~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~ 563 (570)
T 4gr5_A 511 LVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRR 563 (570)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchH
Confidence 9999988654 35677889999887754442 3455566666655443
No 47
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.92 E-value=7.7e-25 Score=240.16 Aligned_cols=164 Identities=20% Similarity=0.224 Sum_probs=140.9
Q ss_pred CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc--cccccccCCCccccccccc--CCCceecCcccccchhhhHHH
Q psy5016 10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIG--PDRWLRTGRYKKTSFLYSAMA 83 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~tg~~~~~~~~~~~~~ 83 (485)
..+++ |+|+++++|+|++|++++.|++|||+|+| |++++|||++++.+.+.+. .+|||+||
T Consensus 433 ~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TG------------- 499 (652)
T 1pg4_A 433 KAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG------------- 499 (652)
T ss_dssp CTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEE-------------
T ss_pred cCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECC-------------
Confidence 44555 99999999999999999999999999999 7999999999998887763 37899999
Q ss_pred HhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016 84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 163 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~ 163 (485)
|++++++||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..
T Consensus 500 ------------------------Dlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~ 555 (652)
T 1pg4_A 500 ------------------------DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555 (652)
T ss_dssp ------------------------EEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTT
T ss_pred ------------------------cEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEcCCcCCC---HHHHHHhhcccchhhHh------hhhhhcCCCCCCC
Q psy5016 164 GEEVGISIKLKENAKLN---AYEDKSISSDYHEFETM------YDSIMAHPNRTTP 210 (485)
Q Consensus 164 ~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~ 210 (485)
|+.++++|+++++...+ .++|+++|+++...+.. .++++++.++++.
T Consensus 556 g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~ 611 (652)
T 1pg4_A 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM 611 (652)
T ss_dssp EEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBC
T ss_pred CeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccch
Confidence 99999999998876554 46788888776554433 3344444444443
No 48
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.91 E-value=3.9e-25 Score=235.79 Aligned_cols=164 Identities=21% Similarity=0.207 Sum_probs=135.4
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccc---cCCCceecCcccccchhhhHHHHhhhcchh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYSAMAIRRKLKPL 91 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~---~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~ 91 (485)
|+|+++++|+|++|++++.|++|||+|+|+++|.|||++++.|+++| .+++||+||
T Consensus 327 p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG--------------------- 385 (521)
T 3l8c_A 327 PKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTG--------------------- 385 (521)
T ss_dssp ECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE---------------------
T ss_pred ccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCC---------------------
Confidence 99999999999999999999999999999999999999999999988 457899999
Q ss_pred hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC-CCceEEEE
Q psy5016 92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGIS 170 (485)
Q Consensus 92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 170 (485)
|++++++||+++++||.||+||++|+||+|.|||++|.+||.|.+++|++.++.. .++.+.++
T Consensus 386 ----------------Dlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~ 449 (521)
T 3l8c_A 386 ----------------DIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAY 449 (521)
T ss_dssp ----------------EEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEE
T ss_pred ----------------CEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999987554 46889999
Q ss_pred EEEcCCcCCC-------HHHHHHhhcccchhhHh------hhhhhcCCCCCCCccccc
Q psy5016 171 IKLKENAKLN-------AYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQWW 215 (485)
Q Consensus 171 ~~~~~~~~~~-------~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~~i 215 (485)
|+++++...+ .++|+++|+++...+.. .++++.++++++......
T Consensus 450 vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~ 507 (521)
T 3l8c_A 450 IVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLI 507 (521)
T ss_dssp EEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHH
T ss_pred EEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHh
Confidence 9998774322 56888888887655433 566777777777655543
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.91 E-value=1.7e-25 Score=240.21 Aligned_cols=161 Identities=30% Similarity=0.398 Sum_probs=72.0
Q ss_pred cc-CCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016 15 SS-SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93 (485)
Q Consensus 15 ~~-~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~ 93 (485)
|+ ++++++|+|++|++++.|++|||+|+|++++.|||++|+.|+++|.+++||+||
T Consensus 365 p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG----------------------- 421 (544)
T 3o83_A 365 PISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG----------------------- 421 (544)
T ss_dssp ESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEE-----------------------
T ss_pred ecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcC-----------------------
Confidence 64 899999999999999999999999999999999999999999999889999999
Q ss_pred hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016 94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173 (485)
Q Consensus 94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.++|++
T Consensus 422 --------------Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~ 487 (544)
T 3o83_A 422 --------------DLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVS 487 (544)
T ss_dssp --------------EEEEECTTSCEEEEEEEC------------------------------------------------
T ss_pred --------------CEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcCCCHHHHHHhhcc-cchhh------HhhhhhhcCCCCCCCccc
Q psy5016 174 KENAKLNAYEDKSISSD-YHEFE------TMYDSIMAHPNRTTPYYQ 213 (485)
Q Consensus 174 ~~~~~~~~~~l~~~l~~-~~~~~------~~~~~I~~~~n~~l~~~~ 213 (485)
++ ...+.+++++++++ +...+ ..+++++.++++++....
T Consensus 488 ~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~ 533 (544)
T 3o83_A 488 RN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQ 533 (544)
T ss_dssp -----------------------------------------------
T ss_pred CC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHH
Confidence 76 34566778888776 33332 335566777777665443
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.91 E-value=1.5e-24 Score=231.43 Aligned_cols=161 Identities=27% Similarity=0.464 Sum_probs=141.7
Q ss_pred cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhc
Q psy5016 11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKL 88 (485)
Q Consensus 11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~ 88 (485)
.+++ |+++++++|+|++|++++.| +|||+|+|++++.|||++|+.|++.|. ++||+||
T Consensus 336 ~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~-~g~~~TG------------------ 395 (517)
T 3r44_A 336 AGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTG------------------ 395 (517)
T ss_dssp TTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEE-TTEEEEE------------------
T ss_pred CCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhc-CCCEecc------------------
Confidence 3445 99999999999999999999 899999999999999999999999994 8999999
Q ss_pred chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016 89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 168 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.
T Consensus 396 -------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~ 456 (517)
T 3r44_A 396 -------------------DIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAA 456 (517)
T ss_dssp -------------------EEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred -------------------eeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEE
Confidence 9999999999999999999999999999999999999999999999999999999888888
Q ss_pred EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
++| +.++...+.++|+++|+++...+.. .++++.++++++..
T Consensus 457 a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R 504 (517)
T 3r44_A 457 AIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILK 504 (517)
T ss_dssp EEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCH
T ss_pred EEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccH
Confidence 887 6666678899999999877655533 33455555554443
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.91 E-value=3e-24 Score=228.51 Aligned_cols=159 Identities=20% Similarity=0.156 Sum_probs=135.9
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCccccccccc---CCCceecCcccccchhhhHHHHhhhcchh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSAMAIRRKLKPL 91 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~~~~~~~~~~~ 91 (485)
|+|+++++|+|++|++++.|++|||+|+|+++|.|||++|+.|++.|. +++||+||
T Consensus 323 ~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG--------------------- 381 (511)
T 3e7w_A 323 AKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG--------------------- 381 (511)
T ss_dssp ECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE---------------------
T ss_pred eeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC---------------------
Confidence 889999999999999999999999999999999999999999999883 22379999
Q ss_pred hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016 92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (485)
|++++ +||+++++||.||+||++|+||+|.|||++|.+||.|.+++|++++++..++.+.++|
T Consensus 382 ----------------Dlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 444 (511)
T 3e7w_A 382 ----------------DAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAI 444 (511)
T ss_dssp ----------------EEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEE
T ss_pred ----------------CeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEE
Confidence 99999 5999999999999999999999999999999999999999999999998899999999
Q ss_pred EEcCCcCCCH----HHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 172 KLKENAKLNA----YEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 172 ~~~~~~~~~~----~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
+++++...+. ++|+++|+++...+.. .++++.++++++..
T Consensus 445 v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R 494 (511)
T 3e7w_A 445 VPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDR 494 (511)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCH
T ss_pred EeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccH
Confidence 9987755543 5677777665444322 34455555555443
No 52
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.91 E-value=1.7e-24 Score=233.76 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=140.6
Q ss_pred CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEE-----ccccccccCCCcccccccccCCCceecCcccccchhhhHH
Q psy5016 10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIR-----GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM 82 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~-----~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~ 82 (485)
..+++ |+|+++++|+|++|+++|.|++|||+|+ |+++|.|||++++.|.+.|. ++||+||
T Consensus 372 ~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TG------------ 438 (570)
T 3c5e_A 372 KPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLG------------ 438 (570)
T ss_dssp CTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEE------------
T ss_pred CCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccc------------
Confidence 44555 9999999999999999999999999999 99999999999999999995 8999999
Q ss_pred HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016 83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~ 162 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++.
T Consensus 439 -------------------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 493 (570)
T 3c5e_A 439 -------------------------DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493 (570)
T ss_dssp -------------------------EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred -------------------------eeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCC
Confidence 9999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEEEEcCCcC--C---CHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 163 MGEEVGISIKLKENAK--L---NAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 163 ~~~~~~~~~~~~~~~~--~---~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
.|+.+.++|++.++.. . ..++|+++|+++...+.. .++++.++++++..
T Consensus 494 ~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R 553 (570)
T 3c5e_A 494 RGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQR 553 (570)
T ss_dssp TEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCH
T ss_pred CCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcH
Confidence 8999999999876531 1 246777887765544322 34455555555543
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.91 E-value=3.2e-24 Score=228.29 Aligned_cols=160 Identities=20% Similarity=0.182 Sum_probs=137.9
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccc---cCCCceecCcccccchhhhHHHHhhhcchh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYSAMAIRRKLKPL 91 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~---~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~ 91 (485)
|+++++++|+|++|++++.|++|||+|+|+++|.|||++|+.|++.| .+++||+||
T Consensus 324 ~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG--------------------- 382 (512)
T 3fce_A 324 CKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG--------------------- 382 (512)
T ss_dssp ECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE---------------------
T ss_pred ccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC---------------------
Confidence 89999999999999999999999999999999999999999999987 346799999
Q ss_pred hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016 92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (485)
|++++ +||+++++||.||+||++|+||+|.|||++|.+||.|.+++|+++++...++.+.++|
T Consensus 383 ----------------Dlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 445 (512)
T 3fce_A 383 ----------------DAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445 (512)
T ss_dssp ----------------EEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred ----------------ceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEE
Confidence 99999 7999999999999999999999999999999999999999999999998889999999
Q ss_pred EEcCCcCCCH----HHHHHhhcccchhhHh------hhhhhcCCCCCCCcc
Q psy5016 172 KLKENAKLNA----YEDKSISSDYHEFETM------YDSIMAHPNRTTPYY 212 (485)
Q Consensus 172 ~~~~~~~~~~----~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~ 212 (485)
++.++...+. ++|+++|+++...+.. .++++.++++++...
T Consensus 446 v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~ 496 (512)
T 3fce_A 446 VPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRK 496 (512)
T ss_dssp EECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHH
T ss_pred ecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHH
Confidence 9987654443 4677777766544432 344555555555443
No 54
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.91 E-value=2.6e-25 Score=236.61 Aligned_cols=161 Identities=27% Similarity=0.445 Sum_probs=70.6
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~ 94 (485)
|+|+++++|+|++|++++.|++|||+|+|++++.|||++++.|++.|. ++||+||
T Consensus 326 p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TG------------------------ 380 (509)
T 3ivr_A 326 PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTG------------------------ 380 (509)
T ss_dssp ECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEE------------------------
T ss_pred cCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccc------------------------
Confidence 999999999999999999999999999999999999999999999996 8999999
Q ss_pred hhhhcccccccccceEEEecCccEEEeecc--CceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016 95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 172 (485)
Q Consensus 95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~--~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (485)
|++++++||+++++||. ||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+.++|+
T Consensus 381 -------------Dl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~ 447 (509)
T 3ivr_A 381 -------------DMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV 447 (509)
T ss_dssp -------------EEEEECTTSCEEEEEEC--------------------------------------------------
T ss_pred -------------cEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEE
Confidence 99999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EcCCcCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCCccc
Q psy5016 173 LKENAKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTPYYQ 213 (485)
Q Consensus 173 ~~~~~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~~~~ 213 (485)
+.++...+.++|+++|+++...+ ...++++.++++++....
T Consensus 448 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~ 494 (509)
T 3ivr_A 448 CKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAA 494 (509)
T ss_dssp -----------------------------------------------
T ss_pred eCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHH
Confidence 98887788889999998875443 334566666666655433
No 55
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.90 E-value=7.2e-25 Score=250.82 Aligned_cols=169 Identities=26% Similarity=0.374 Sum_probs=76.0
Q ss_pred CCcCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016 9 LQFSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR 85 (485)
Q Consensus 9 ~~~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~ 85 (485)
...+++ |+|+++++|+|+ +|++++.|++|||+|+|+++++|||++|+.|+++|..++||+||
T Consensus 399 ~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TG--------------- 463 (979)
T 3tsy_A 399 VKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG--------------- 463 (979)
T ss_dssp CCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE---------------
T ss_pred cCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcC---------------
Confidence 344555 999999999995 59999999999999999999999999999999999889999999
Q ss_pred hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016 86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165 (485)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~ 165 (485)
|++++++||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++
T Consensus 464 ----------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~ 521 (979)
T 3tsy_A 464 ----------------------DIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGE 521 (979)
T ss_dssp ----------------------EEEEECTTSCEEEEEESCC---------------------------------------
T ss_pred ----------------------CEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCc
Confidence 9999999999999999999999999999999999999999999999999999998999
Q ss_pred eEEEEEEEcCCcCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCCcccc
Q psy5016 166 EVGISIKLKENAKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTPYYQW 214 (485)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~~~~~ 214 (485)
.++++|++.++...+.++|+++|+++...+ ...++++.++++++..+..
T Consensus 522 ~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L 576 (979)
T 3tsy_A 522 VPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL 576 (979)
T ss_dssp -------------------------------------------------------
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHH
Confidence 999999998887788889999998876544 3357788888887765543
No 56
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.90 E-value=1e-24 Score=229.66 Aligned_cols=183 Identities=10% Similarity=-0.027 Sum_probs=131.8
Q ss_pred cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCc------ccccch-hhccchhhhHh-------------
Q psy5016 225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDW------EYADKC-EKSMQGWAKTL------------- 284 (485)
Q Consensus 225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~------~~~~~~-~pl~~~~~~~~------------- 284 (485)
....-+.++|||||||.||.++++|.+...+.......+.++. .+...+ .|++|.++...
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v 260 (480)
T 3t5a_A 181 EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAV 260 (480)
T ss_dssp SCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEE
T ss_pred CCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceE
Confidence 3345577899999999999999999998887776665555542 222222 27777655320
Q ss_pred ------------------------------------------------------hhhccCCCCCHHHHHHHHhhhhhccc
Q psy5016 285 ------------------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQN 310 (485)
Q Consensus 285 ------------------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~ 310 (485)
..++||+++++++.+++.+.|+..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~ 340 (480)
T 3t5a_A 261 LTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNL 340 (480)
T ss_dssp ECCHHHHHHCTHHHHHHTTSSSEEEEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTC
T ss_pred EECHHHHHHCHHHHHHHHHhhceeEeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCC
Confidence 01178999999999999999865332
Q ss_pred --CccccccccCCCCCC----Ccc-------------------------CccccCcccccCCcEEEE-cC--CCCCCCCC
Q psy5016 311 --RIDDVEYEFQEKMFK----DVK-------------------------NYLITPALKGLYHFKKWM-NP--KFSTTTRK 356 (485)
Q Consensus 311 --~~i~~~YG~TEt~~~----~~~-------------------------~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~ 356 (485)
..+++.||+||++.. ... ....+++|+|++ ++++| |+ +..+++|+
T Consensus 341 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~ 419 (480)
T 3t5a_A 341 QERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT 419 (480)
T ss_dssp CGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB
T ss_pred ChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC
Confidence 356799999997421 000 234568999999 99999 75 46699999
Q ss_pred ceEEEEecCCCCccccccc-Ccccccccccc--------cCCCCCeEecCceEEEecCCeEEEEec
Q psy5016 357 VALTWPNSMDSEARIYHYK-KYLREEENITV--------PDSAGRSIFEKDQFVLREDGYGQVVGR 413 (485)
Q Consensus 357 ~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~--------~~~~g~~~~TGD~~~~d~~G~l~i~GR 413 (485)
+|||+|+|+ +++.||| +++.|++.|.. .+.+| ||+|||+|++| ||+|+|+||
T Consensus 420 ~GEl~v~g~---~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~-w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 420 VGEIWVHGD---NVANGYWQKPDESERTFGGKIVTPSPGTPEGP-WLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CEEEEEEST---TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCC-BEEEEEEEEEE-TTEEEECC-
T ss_pred EEEEEEeCC---ccccccccCcchhHHHHhhhhccccCCCCCCC-eeeccceeeEE-CCEEEEeCC
Confidence 999999999 9999999 89999888720 11455 99999999997 999999998
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.90 E-value=9.1e-24 Score=230.12 Aligned_cols=160 Identities=28% Similarity=0.393 Sum_probs=143.1
Q ss_pred cc-CCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016 15 SS-SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93 (485)
Q Consensus 15 ~~-~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~ 93 (485)
|+ ++++++|+|++|+++|.|++|||+|+|+++++|||++|+.|+++|.+++||+||
T Consensus 360 p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTG----------------------- 416 (617)
T 3rg2_A 360 PMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG----------------------- 416 (617)
T ss_dssp ESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEE-----------------------
T ss_pred cCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecC-----------------------
Confidence 54 788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016 94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173 (485)
Q Consensus 94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (485)
|++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+.++++.
T Consensus 417 --------------Dl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~ 482 (617)
T 3rg2_A 417 --------------DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVV 482 (617)
T ss_dssp --------------EEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred --------------ceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999889999999998
Q ss_pred cCCcCCCHHHHHHhhccc-chhhHh------hhhhhcCCCCCCCccc
Q psy5016 174 KENAKLNAYEDKSISSDY-HEFETM------YDSIMAHPNRTTPYYQ 213 (485)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~-~~~~~~------~~~I~~~~n~~l~~~~ 213 (485)
.+ ..+.++++++++++ ...+.. +++++.++++++....
T Consensus 483 ~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~ 527 (617)
T 3rg2_A 483 KE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQ 527 (617)
T ss_dssp SS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHH
T ss_pred CC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHH
Confidence 76 46788999999873 443322 4566777777666544
No 58
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.90 E-value=6.6e-24 Score=226.78 Aligned_cols=147 Identities=27% Similarity=0.427 Sum_probs=127.3
Q ss_pred CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016 10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK 87 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~ 87 (485)
..+++ |+|+++++|+|++|+++|.|++|||+|+|++++.|||++++.|.++|. ++||+||
T Consensus 350 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TG----------------- 411 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSG----------------- 411 (529)
T ss_dssp CTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEE-----------------
T ss_pred ccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccC-----------------
Confidence 34555 999999999999999999999999999999999999999999999996 8999999
Q ss_pred cchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016 88 LKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167 (485)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (485)
|++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|+++ ++..++.+
T Consensus 412 --------------------Dl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~ 470 (529)
T 2v7b_A 412 --------------------DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKT 470 (529)
T ss_dssp --------------------EEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEE
T ss_pred --------------------ceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEE
Confidence 999999999999999999999999999999999999999999999999999 66677889
Q ss_pred EEEEEEcCCcCC---CHHHHHHhhcccchhh
Q psy5016 168 GISIKLKENAKL---NAYEDKSISSDYHEFE 195 (485)
Q Consensus 168 ~~~~~~~~~~~~---~~~~l~~~l~~~~~~~ 195 (485)
.++|++.++... ..++|+++|+++...+
T Consensus 471 ~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~ 501 (529)
T 2v7b_A 471 RAFVVLKREFAPSEILAEELKAFVKDRLAPH 501 (529)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTTSCTT
T ss_pred EEEEEecCCCCcchhHHHHHHHHHHhhcchh
Confidence 999998876432 2357888887654443
No 59
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.89 E-value=8.2e-24 Score=232.38 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=136.9
Q ss_pred CcCcc--ccCCcEEEEEcC-CCccCCC-CCceEEEEEc--cccccccCCCcccccccccC--CCceecCcccccchhhhH
Q psy5016 10 QFSTL--SSSSFQAKVVDH-NNRIVPF-GTPGELLIRG--HCNMLGYWEDEQKTKETIGP--DRWLRTGRYKKTSFLYSA 81 (485)
Q Consensus 10 ~~~~~--~~~~~~~~i~d~-~~~~~~~-g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~~--~~~~~tg~~~~~~~~~~~ 81 (485)
..+++ |+|+++++|+|+ +|++++. |++|||+|+| |++++|||++++.+.+.+.. +|||+||
T Consensus 440 ~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TG----------- 508 (663)
T 1ry2_A 440 KPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG----------- 508 (663)
T ss_dssp CTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE-----------
T ss_pred CCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcC-----------
Confidence 44555 999999999999 8999998 9999999999 58999999999988887643 7899999
Q ss_pred HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 161 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~ 161 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++++++
T Consensus 509 --------------------------Dlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 509 --------------------------DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562 (663)
T ss_dssp --------------------------EEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred --------------------------CEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEEcCCcC---C-C------HHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016 162 RMGEEVGISIKLKENAK---L-N------AYEDKSISSDYHEFETM------YDSIMAHPNRTTPY 211 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~-~------~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~ 211 (485)
..|+.++++|+++++.. . + .++|+++|+++...+.. .++++++.++++..
T Consensus 563 ~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R 628 (663)
T 1ry2_A 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMR 628 (663)
T ss_dssp TTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCH
T ss_pred CCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchH
Confidence 88999999999987643 2 1 46777777766444322 34455555555443
No 60
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.89 E-value=8.4e-23 Score=240.00 Aligned_cols=162 Identities=24% Similarity=0.246 Sum_probs=145.3
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC------CCceecCcccccchhhhHHHHhhhc
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP------DRWLRTGRYKKTSFLYSAMAIRRKL 88 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------~~~~~tg~~~~~~~~~~~~~~~~~~ 88 (485)
|+++++++|+|++++++|.|++|||+|+|+++++|||++|+.|+++|.+ ++||+||
T Consensus 782 p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTG------------------ 843 (1304)
T 2vsq_A 782 PISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTG------------------ 843 (1304)
T ss_dssp ECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEE------------------
T ss_pred eeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecC------------------
Confidence 9999999999999999999999999999999999999999999999843 4699999
Q ss_pred chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016 89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 168 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (485)
|++++++||.++++||+||+||++|++|+|.|||.+|.+||+|.+|+|++.++...++.++
T Consensus 844 -------------------Dl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~ 904 (1304)
T 2vsq_A 844 -------------------DLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASIN 904 (1304)
T ss_dssp -------------------EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEE
T ss_pred -------------------CeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCccccc
Q psy5016 169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQWW 215 (485)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~~i 215 (485)
++++..+ ..+.++|+++|+++...+.. +++++.++|+++..+...
T Consensus 905 a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~ 955 (1304)
T 2vsq_A 905 AYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLP 955 (1304)
T ss_dssp EEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCC
T ss_pred EEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcC
Confidence 9998765 56788999999887665543 456778888877665543
No 61
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.88 E-value=3.9e-23 Score=225.27 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=130.3
Q ss_pred ccCCcEEEEEcCCCcc-CCCCCceEEEEEccccccccCCCcccccccccCC-------CceecCcccccchhhhHHHHhh
Q psy5016 15 SSSSFQAKVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-------RWLRTGRYKKTSFLYSAMAIRR 86 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~-~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~-------~~~~tg~~~~~~~~~~~~~~~~ 86 (485)
|+++++++|+|+++++ +|.|++|||+|+|+++++|||++|+.|+++|..+ +||+||
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTG---------------- 401 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTG---------------- 401 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEE----------------
T ss_pred cccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCC----------------
Confidence 9999999999999887 8999999999999999999999999999999653 789999
Q ss_pred hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016 87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (485)
|++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.++...++.
T Consensus 402 ---------------------Dl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l 460 (620)
T 4dg8_A 402 ---------------------DRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL 460 (620)
T ss_dssp ---------------------EEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE
T ss_pred ---------------------CEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE
Confidence 99999999999999999999999999999999999999999999999999988755444
Q ss_pred EEEEEEEcCCcCCCHHHHHHhhcccchhh--HhhhhhhcCCCCCCCcccc
Q psy5016 167 VGISIKLKENAKLNAYEDKSISSDYHEFE--TMYDSIMAHPNRTTPYYQW 214 (485)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~I~~~~n~~l~~~~~ 214 (485)
+.++ +... ....+.+++.|..+-.+. ...++++.++++++..+..
T Consensus 461 v~~~-~~~~--~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L 507 (620)
T 4dg8_A 461 LCAW-TGKA--DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAAL 507 (620)
T ss_dssp EEEE-EECT--TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHH
T ss_pred EEEE-ecCh--HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHH
Confidence 4444 3322 334466666665554433 3367788888888776554
No 62
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.88 E-value=1.8e-22 Score=214.16 Aligned_cols=152 Identities=26% Similarity=0.376 Sum_probs=127.3
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~ 94 (485)
|+|+++++|+|++ .|++|||+|+|+++++|||++++.|.+ + .++||+||
T Consensus 332 p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TG------------------------ 380 (501)
T 3ipl_A 332 PSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTG------------------------ 380 (501)
T ss_dssp ECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEE------------------------
T ss_pred CCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecC------------------------
Confidence 9999999999986 567899999999999999999998887 5 48999999
Q ss_pred hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016 95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 174 (485)
Q Consensus 95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (485)
|++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.+.++++..
T Consensus 381 -------------Dl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~ 447 (501)
T 3ipl_A 381 -------------DIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE 447 (501)
T ss_dssp -------------EEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred -------------CEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCcc
Q psy5016 175 ENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYY 212 (485)
Q Consensus 175 ~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~ 212 (485)
...+.++|+++|+++...+.. .++++.++++++..+
T Consensus 448 --~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~ 489 (501)
T 3ipl_A 448 --SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRN 489 (501)
T ss_dssp --SCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC----------
T ss_pred --CCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHH
Confidence 356789999999887655433 344555555555443
No 63
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.87 E-value=6.8e-23 Score=220.51 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=67.2
Q ss_pred ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCccccccccc-CCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016 15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-PDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ 92 (485)
Q Consensus 15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~ 92 (485)
|+++++++|+|++ +++++.|++|||+|+|+++|.|||++|+.|+..+. +++||+||
T Consensus 352 p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TG---------------------- 409 (562)
T 3ite_A 352 PLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTG---------------------- 409 (562)
T ss_dssp ECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEE----------------------
T ss_pred cCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecC----------------------
Confidence 9999999999965 78999999999999999999999999998887654 23499999
Q ss_pred hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcC-CCcceEEEEEeeCCCCCceEEEEE
Q psy5016 93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISI 171 (485)
Q Consensus 93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~ 171 (485)
|++++|+||+++|+||.||+||++|+||+|.|||++|.+| +.+.+++|++.+++..++...+++
T Consensus 410 ---------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 474 (562)
T 3ite_A 410 ---------------DIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSF 474 (562)
T ss_dssp ---------------EEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred ---------------CEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEE
Confidence 9999999999999999999999999999999999999998 788899999998888887777766
Q ss_pred EEcCCcCCC-------------HHHHHHhhcccchhh
Q psy5016 172 KLKENAKLN-------------AYEDKSISSDYHEFE 195 (485)
Q Consensus 172 ~~~~~~~~~-------------~~~l~~~l~~~~~~~ 195 (485)
+..++.... .++|+++|+++...+
T Consensus 475 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y 511 (562)
T 3ite_A 475 VASSGAAVRGELRWINENYKEINNSLRQACEQTLPAY 511 (562)
T ss_dssp -------------------------------------
T ss_pred EecccccccccccccccchhhHHHHHHHHHHhhCCcc
Confidence 655443322 236777777765544
No 64
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.86 E-value=4.4e-22 Score=214.25 Aligned_cols=137 Identities=26% Similarity=0.367 Sum_probs=117.9
Q ss_pred ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016 15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94 (485)
Q Consensus 15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~ 94 (485)
|+|+++++|+|++|++++.|++|||+|+|+++++|||+++..+.+.+ .++||+||
T Consensus 390 p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TG------------------------ 444 (576)
T 3gqw_A 390 ALPEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTG------------------------ 444 (576)
T ss_dssp ECTTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEE------------------------
T ss_pred cCCCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeecc------------------------
Confidence 99999999999999999999999999999999999999998887765 58999999
Q ss_pred hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016 95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 174 (485)
Q Consensus 95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (485)
|++++ +||+++++||.||+||++|++|+|.|||++|.+||+|.+++|+++.+.. +.+.++++..
T Consensus 445 -------------Dl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~ 508 (576)
T 3gqw_A 445 -------------DLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCR 508 (576)
T ss_dssp -------------EEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECC
T ss_pred -------------ceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEe
Confidence 99999 6999999999999999999999999999999999999999888887664 3455555555
Q ss_pred CCcCCCHHHHHHhhcccc
Q psy5016 175 ENAKLNAYEDKSISSDYH 192 (485)
Q Consensus 175 ~~~~~~~~~l~~~l~~~~ 192 (485)
.......+++.++++++.
T Consensus 509 ~~~~~~~~~l~~~l~~~l 526 (576)
T 3gqw_A 509 ISDEERRGQLIHALAARI 526 (576)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 443344556666665543
No 65
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.84 E-value=4.4e-22 Score=215.11 Aligned_cols=137 Identities=23% Similarity=0.361 Sum_probs=120.7
Q ss_pred ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccC--------CCceecCcccccchhhhHHHHh
Q psy5016 15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP--------DRWLRTGRYKKTSFLYSAMAIR 85 (485)
Q Consensus 15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~--------~~~~~tg~~~~~~~~~~~~~~~ 85 (485)
|+++ ++|+|++ +++++.|++|||+|+|+++|.|||++|+.|+++|.. ++||+||
T Consensus 379 p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TG--------------- 441 (590)
T 3kxw_A 379 PIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG--------------- 441 (590)
T ss_dssp ESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEE---------------
T ss_pred CCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecC---------------
Confidence 7777 8999988 899999999999999999999999999999999853 2399999
Q ss_pred hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHH-HcCCCcc--eEEEEEeeCCC
Q psy5016 86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVL--EAYAYGVPDER 162 (485)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~-~~~~~v~--~~~~~~~~~~~ 162 (485)
|+++++ ||+++|+||.||+||++|+||+|.|||++| ..||.|. +++|++++++.
T Consensus 442 ----------------------Dlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~ 498 (590)
T 3kxw_A 442 ----------------------DLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH 498 (590)
T ss_dssp ----------------------EEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT
T ss_pred ----------------------cEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC
Confidence 999999 999999999999999999999999999999 7899998 89999998876
Q ss_pred CCceEEEEEEEcCCc--CCCHHHHHHhhcccc
Q psy5016 163 MGEEVGISIKLKENA--KLNAYEDKSISSDYH 192 (485)
Q Consensus 163 ~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~ 192 (485)
++.+.+++++.++. ..+.+++.++|+++.
T Consensus 499 -~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 499 -EYKLTVMCEVKNRFMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp -EEEEEEEEEESCTTCCHHHHHHHHHHHHHHH
T ss_pred -CceEEEEEEeccccccchhHHHHHHHHHHHH
Confidence 68888999887763 345567777776553
No 66
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.74 E-value=6.2e-18 Score=176.11 Aligned_cols=128 Identities=20% Similarity=0.309 Sum_probs=111.0
Q ss_pred ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016 15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93 (485)
Q Consensus 15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~ 93 (485)
|.+++.++|+| ++|+++++|++|||+|+|. +.+.+ +++||+||
T Consensus 261 ~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~TG----------------------- 304 (436)
T 3qov_A 261 WEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRTR----------------------- 304 (436)
T ss_dssp CTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEEE-----------------------
T ss_pred ccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEcC-----------------------
Confidence 77899999999 6799999999999999973 23334 58999999
Q ss_pred hhhhhcccccccccceEEEecCc------c---EEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016 94 QQQQQIGFFYSLVSDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 164 (485)
Q Consensus 94 ~~~~~~~~~~~~~~D~~~~~~~g------~---~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~ 164 (485)
|+++++++| + ++|+||.||+||++|++|+|.|||++|.+||+|.++++++++++..+
T Consensus 305 --------------Dl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~ 370 (436)
T 3qov_A 305 --------------DLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ 370 (436)
T ss_dssp --------------EEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred --------------CEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence 999999998 5 69999999999999999999999999999999999999999988888
Q ss_pred ceEEEEEEEcCCcCCC----HHHHHHhhcccch
Q psy5016 165 EEVGISIKLKENAKLN----AYEDKSISSDYHE 193 (485)
Q Consensus 165 ~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~ 193 (485)
+.+.++|+++ +...+ .++++++++++..
T Consensus 371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~ 402 (436)
T 3qov_A 371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLK 402 (436)
T ss_dssp EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEc-CccccchhhHHHHHHHHHHHHH
Confidence 9999999998 65554 5677777765433
No 67
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.73 E-value=4.6e-18 Score=177.41 Aligned_cols=128 Identities=22% Similarity=0.364 Sum_probs=109.2
Q ss_pred ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016 15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93 (485)
Q Consensus 15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~ 93 (485)
|.+++.++|+|+ +|++++.|++|||+|+|. +.+.+ +++||+||
T Consensus 268 ~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~TG----------------------- 311 (443)
T 2y4o_A 268 WEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRTR----------------------- 311 (443)
T ss_dssp CTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEEE-----------------------
T ss_pred ccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeecC-----------------------
Confidence 678999999995 599999999999999972 23344 58899999
Q ss_pred hhhhhcccccccccceEEEecC-ccE-----EEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016 94 QQQQQIGFFYSLVSDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167 (485)
Q Consensus 94 ~~~~~~~~~~~~~~D~~~~~~~-g~~-----~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (485)
|+++++++ |++ +++||.||+||++|++|+|.|||++|.+||+|.++++++++++..++.+
T Consensus 312 --------------Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~ 377 (443)
T 2y4o_A 312 --------------DLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRL 377 (443)
T ss_dssp --------------EEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEE
T ss_pred --------------CEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceE
Confidence 99999999 987 8999999999999999999999999999999999999999887778899
Q ss_pred EEEEEEcC--C---cCCCHHHHHHhhcccc
Q psy5016 168 GISIKLKE--N---AKLNAYEDKSISSDYH 192 (485)
Q Consensus 168 ~~~~~~~~--~---~~~~~~~l~~~l~~~~ 192 (485)
.++|++++ + ...+.++++++|+++.
T Consensus 378 ~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l 407 (443)
T 2y4o_A 378 DLAVELRSEAAASVTDGERAALARELQHRI 407 (443)
T ss_dssp EEEEEECHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCcccccchhhHHHHHHHHHHHHH
Confidence 99999876 2 2234467777776543
No 68
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.72 E-value=8.1e-18 Score=175.25 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=110.0
Q ss_pred ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016 15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93 (485)
Q Consensus 15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~ 93 (485)
|.+++.++|+|+ +|+++|.|+.|||+|+|. +.+.+ +++||+||
T Consensus 266 ~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~TG----------------------- 309 (437)
T 2y27_A 266 WEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRTR----------------------- 309 (437)
T ss_dssp CTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEEE-----------------------
T ss_pred ccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeecC-----------------------
Confidence 678999999996 499999999999999972 33344 58999999
Q ss_pred hhhhhcccccccccceEEEec-CccE-----EEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016 94 QQQQQIGFFYSLVSDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167 (485)
Q Consensus 94 ~~~~~~~~~~~~~~D~~~~~~-~g~~-----~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (485)
|++++++ +|++ +++||.||+||++|++|+|.|||++|.+||+|.++++++++++..++.+
T Consensus 310 --------------Dl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l 375 (437)
T 2y27_A 310 --------------DLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL 375 (437)
T ss_dssp --------------EEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEE
T ss_pred --------------CEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceE
Confidence 9999998 6985 8999999999999999999999999999999999999999887778899
Q ss_pred EEEEEEcCCcC---CCHHHHHHhhcccc
Q psy5016 168 GISIKLKENAK---LNAYEDKSISSDYH 192 (485)
Q Consensus 168 ~~~~~~~~~~~---~~~~~l~~~l~~~~ 192 (485)
.++|+++++.. .+.++++++|+++.
T Consensus 376 ~a~v~~~~~~~~~~~~~~~l~~~l~~~l 403 (437)
T 2y27_A 376 TLNVEPCPETAPDTAAIQVAKQALAYDI 403 (437)
T ss_dssp EEEECBCTTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCccchhhhHHHHHHHHHHHH
Confidence 99999887643 33467777776553
No 69
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.61 E-value=5.3e-16 Score=157.71 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCCceEEEEEccccccccCCCcccccc-cccCCCceecCcccccchhhhHHHHhhhcchhhhhhhhhcccccccccceEE
Q psy5016 33 FGTPGELLIRGHCNMLGYWEDEQKTKE-TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFV 111 (485)
Q Consensus 33 ~g~~Gel~i~~~~~~~gy~~~~~~~~~-~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 111 (485)
.+..|++.+.+|++..+|+++.+.... .+..++||+|| |+++
T Consensus 195 ~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TG-------------------------------------Dlg~ 237 (358)
T 4gs5_A 195 GPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTN-------------------------------------DLVE 237 (358)
T ss_dssp STTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEE-------------------------------------EEEE
T ss_pred ccccceeeccCCCeEEEecCcCceEEecccccCcceecC-------------------------------------Cccc
Confidence 344566666666666666655443322 23458899999 9999
Q ss_pred EecCccEEEeeccCceEEeCcEEeChHHHHHHHH---cCCCcceEEEE-EeeCCCCCceEEEEEEEcCCcCCCHHHHHHh
Q psy5016 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPNVLEAYAY-GVPDERMGEEVGISIKLKENAKLNAYEDKSI 187 (485)
Q Consensus 112 ~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~---~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (485)
+|+|| ++++||.||+||++|+||+|.|||++|. .||+|.+++|+ +.+|+..|+.++++|+.... ..+.++|+++
T Consensus 238 ~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~ 315 (358)
T 4gs5_A 238 IHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAE 315 (358)
T ss_dssp ECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHH
T ss_pred cccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHH
Confidence 99988 5677999999999999999999998774 58999998876 67899999999888876543 4456788888
Q ss_pred hcccchhhHh------hhhhhcCCCCCCC
Q psy5016 188 SSDYHEFETM------YDSIMAHPNRTTP 210 (485)
Q Consensus 188 l~~~~~~~~~------~~~I~~~~n~~l~ 210 (485)
|+++...+.. .++++.++++++.
T Consensus 316 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~ 344 (358)
T 4gs5_A 316 IRSRVSTYENPKHIYFAKAFAKTQTDKID 344 (358)
T ss_dssp HHHHSCGGGSCSCEEEESSCCBCTTSCBC
T ss_pred HHhhCCCCCCceEEEEECCcCCCCCCChh
Confidence 8876554432 3344555555444
No 70
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.49 E-value=8.2e-14 Score=141.63 Aligned_cols=111 Identities=6% Similarity=-0.110 Sum_probs=72.9
Q ss_pred ccCCCCCHHHHHHHH-hhhhhcccCccccccccCCCCCCCccCcccc-Ccccc------cCCcEEEE-cC--CCCCCCCC
Q psy5016 288 YNSYAGPVTLRRNLI-DPLEIVQNRIDDVEYEFQEKMFKDVKNYLIT-PALKG------LYHFKKWM-NP--KFSTTTRK 356 (485)
Q Consensus 288 ~~g~~~~~~l~~~~~-~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~-s~G~p------~pg~~v~I-d~--~~~~~~g~ 356 (485)
+||+++++++.+++. +.|+. ..+++.||+||++... ...+. ++|+| +|+++++| |+ +..+++|+
T Consensus 238 ~gGe~l~~~~~~~~~~~~~p~---~~v~~~YG~TE~~~~~--~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~ 312 (369)
T 3hgu_A 238 LGGTELNLDEIKFIASEILPD---CEFSASYGSTSALGVS--RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGE 312 (369)
T ss_dssp EESSCCCHHHHHHHHHHTCTT---SEEEEEEEEGGGTEEE--EECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC
T ss_pred ECCccCCHHHHHHHHHHhCCC---cEEEcccCchhhhcce--eccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCC
Confidence 899999999999999 88842 5568999999975322 22334 49999 99999999 65 66799999
Q ss_pred ceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC---------CeEEEEecCCCeEEECcE
Q psy5016 357 VALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED---------GYGQVVGRIKDMIIRGGE 423 (485)
Q Consensus 357 ~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~---------G~l~i~GR~~d~I~~~G~ 423 (485)
+|||+|++...+..+. +|+|||+++..+. ..+..++|.++..++.|.
T Consensus 313 ~GEl~vt~l~~~~~l~--------------------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 313 RGNVIVTHLSPWAFYP--------------------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEEETTEEEE--------------------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred ceEEEEEEcCcccccc--------------------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999999861101111 6777777776543 235566777777777664
No 71
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.34 E-value=5.4e-13 Score=139.98 Aligned_cols=70 Identities=34% Similarity=0.619 Sum_probs=65.5
Q ss_pred ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCccccccccc-----------CCCceecCcccccchhhhHH
Q psy5016 15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-----------PDRWLRTGRYKKTSFLYSAM 82 (485)
Q Consensus 15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~tg~~~~~~~~~~~~ 82 (485)
|+| ++++|+|++ |++++.|++|||+|+|+++|+|||++|++|+++|. .++||+||
T Consensus 399 p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG------------ 465 (480)
T 3t5a_A 399 PRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG------------ 465 (480)
T ss_dssp CSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE------------
T ss_pred ccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeecc------------
Confidence 999 999999987 79999999999999999999999999999999985 57899999
Q ss_pred HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeec
Q psy5016 83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGR 123 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR 123 (485)
|+|+++ ||+++|+||
T Consensus 466 -------------------------Dlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 466 -------------------------DSGFVT-DGKMFIIGR 480 (480)
T ss_dssp -------------------------EEEEEE-TTEEEECC-
T ss_pred -------------------------ceeeEE-CCEEEEeCC
Confidence 999997 999999998
No 72
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.16 E-value=9.4e-11 Score=98.08 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=55.3
Q ss_pred ecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016 412 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 471 (485)
Q Consensus 412 GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~ 471 (485)
.|.||||+++|.||+|.|||++|.+||+|.++++++++++..++.+.++|++.++...+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence 489999999999999999999999999999999999999999999999999988765554
No 73
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.11 E-value=1.5e-10 Score=97.00 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=58.0
Q ss_pred ecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC----CHHHHHHHHHhhC
Q psy5016 412 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL----NADDIRTFCKGKV 482 (485)
Q Consensus 412 GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~----~~~~l~~~l~~~l 482 (485)
||.||+|+++|.||+|.|||++|.+||+|.++++++++++.+++.++++|++ ++... +.++|.+.+++.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999988788999999998 65422 2345555555443
No 74
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.04 E-value=4.2e-10 Score=94.09 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=57.1
Q ss_pred eccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCCCHHHH
Q psy5016 122 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184 (485)
Q Consensus 122 gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (485)
.|.|||||++|.||+|.|||++|.+||+|.++++++++++..++.+.++|++.++...+...+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~ 63 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL 63 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchh
Confidence 389999999999999999999999999999999999999999999999999988766665443
No 75
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.94 E-value=1.3e-09 Score=91.24 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=56.3
Q ss_pred eccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCC----CHHHHHHhhc
Q psy5016 122 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL----NAYEDKSISS 189 (485)
Q Consensus 122 gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~ 189 (485)
||.||||+++|.||+|.|||++|.+||+|.++++++++++..++.+.+++++ ++... +.+++.+.++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~ 71 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999887778999999998 65432 2345555554
No 76
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.80 E-value=9.7e-05 Score=78.98 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=64.6
Q ss_pred CCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec----CCeEEEEecCCCeEEECcEeeCh
Q psy5016 352 TTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE----DGYGQVVGRIKDMIIRGGENIYP 427 (485)
Q Consensus 352 ~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~----~G~l~i~GR~~d~I~~~G~~v~p 427 (485)
+..|+.+||+++.. + |.| .|++||+++++. ..++.|+||.+|+|++.|++|++
T Consensus 393 Ve~G~~YelViTt~---~---GL~-----------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~ 449 (609)
T 4b2g_A 393 VEVGKEYELVITTY---A---GLY-----------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE 449 (609)
T ss_dssp CCTTCEEEEEEECT---T---SCC-----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred cCCCCeEEEehhhh---h---hhh-----------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence 67899999999877 2 222 699999999974 46799999999999999999999
Q ss_pred HHHHHHHHc------CCC--ccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016 428 KEIEEFIQT------HPN--VLEAYAYGVPDERMGEEVGISIKLK 464 (485)
Q Consensus 428 ~eIE~~l~~------~~~--V~ea~vv~~~~~~~g~~~~a~vv~~ 464 (485)
.+||++|.+ ..+ |.|-.++.-.. .....-+.|+.+.
T Consensus 450 ~~v~~av~~a~~~l~~~g~~l~eft~~~d~~-~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 450 AELQKAVDNASKLLREVNTSVVEYTSFADTK-TIPGHYVIYWELL 493 (609)
T ss_dssp HHHHHHHHHHHHGGGGTTEEEEEEEEEEECS-SSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCeEEEEEEecCCC-CCCCcEEEEEEEe
Confidence 999999983 233 34555543222 2222445556664
No 77
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.68 E-value=0.00021 Score=76.11 Aligned_cols=104 Identities=7% Similarity=-0.095 Sum_probs=71.1
Q ss_pred CccccccccCCCCCC--CccCccccCccc-ccCCc-EEEE---cCC--------CCCCCCCceEEEEecCCCCccccccc
Q psy5016 311 RIDDVEYEFQEKMFK--DVKNYLITPALK-GLYHF-KKWM---NPK--------FSTTTRKVALTWPNSMDSEARIYHYK 375 (485)
Q Consensus 311 ~~i~~~YG~TEt~~~--~~~~~~~~s~G~-p~pg~-~v~I---d~~--------~~~~~g~~Gel~v~g~~~~~~~~gY~ 375 (485)
..+...|++||+.+. ......+...+- .+|+. -.+. |+. .++..|+.+||+++.. +. .
T Consensus 325 p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l~eVe~G~~YelViTt~---~G---L- 397 (581)
T 4eql_A 325 PLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDLEDVKLGCTYEPVVTNF---AG---L- 397 (581)
T ss_dssp CEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEEGGGCCTTCEEEEEEECS---SS---C-
T ss_pred ccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEeCHHHcCCCceEEEEEeec---cc---e-
Confidence 334489999997432 222222222222 23333 2222 321 1256899999999987 21 1
Q ss_pred CcccccccccccCCCCCeEecCceEEEec----CCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016 376 KYLREEENITVPDSAGRSIFEKDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 437 (485)
Q Consensus 376 ~~~~~~~~~~~~~~~g~~~~TGD~~~~d~----~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~ 437 (485)
+ .|++||+.+... ..++.|+||.+|+|++.|+++++.+||++|.+.
T Consensus 398 --------~--------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 398 --------Y--------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp --------C--------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred --------e--------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 2 699999999975 457999999999999999999999999999853
No 78
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.50 E-value=0.00072 Score=71.96 Aligned_cols=89 Identities=7% Similarity=-0.072 Sum_probs=65.3
Q ss_pred CCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC----CeEEEEecCCCeEEECcEeeCh
Q psy5016 352 TTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED----GYGQVVGRIKDMIIRGGENIYP 427 (485)
Q Consensus 352 ~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~----G~l~i~GR~~d~I~~~G~~v~p 427 (485)
+..|+.+||+++.. + |. + .|++||+.+...- ..+.|+||.++++++.|+++++
T Consensus 388 ve~G~~YelviTt~---~---GL---------~--------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~ 444 (581)
T 4epl_A 388 VKIGEEYEVVITNY---A---GL---------Y--------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTE 444 (581)
T ss_dssp CCTTCEEEEEEEST---T---SC---------S--------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred cCCCCeEEEEEeec---c---ce---------e--------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCH
Confidence 67899999999987 2 11 2 6999999999742 4699999999999999999999
Q ss_pred HHHHHHHHc------CCC--ccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016 428 KEIEEFIQT------HPN--VLEAYAYGVPDERMGEEVGISIKLK 464 (485)
Q Consensus 428 ~eIE~~l~~------~~~--V~ea~vv~~~~~~~g~~~~a~vv~~ 464 (485)
.+||++|.+ ..+ |.|-.+++... ....+-+.|+.+.
T Consensus 445 ~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~ 488 (581)
T 4epl_A 445 RDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS 488 (581)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred HHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence 999999974 233 45555554222 2223445566664
No 79
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=97.04 E-value=0.0003 Score=70.73 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=38.8
Q ss_pred cCCcEEEEEcC-CCccCCCCCceEEEEEccc---cccccCCCcccccccccCCCceecC
Q psy5016 16 SSSFQAKVVDH-NNRIVPFGTPGELLIRGHC---NMLGYWEDEQKTKETIGPDRWLRTG 70 (485)
Q Consensus 16 ~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~---~~~gy~~~~~~~~~~~~~~~~~~tg 70 (485)
+|+++++|+|+ +|+++|.|++|||+|++.. .+.+|+..+..+.... .++|+.+|
T Consensus 292 ~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~-~~g~~~d~ 349 (369)
T 3hgu_A 292 SPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPG-VSGFAGDR 349 (369)
T ss_dssp TTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-STTCSSCE
T ss_pred CCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccccccccCCceEEEecC-CCCCcCcc
Confidence 89999999998 8999999999999998732 2556665554443322 35555555
No 80
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=96.98 E-value=0.0017 Score=69.44 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=54.9
Q ss_pred cccccceEEEec----CccEEEeeccCceEEeCcEEeChHHHHHHHHcC------CC--cceEEEEEeeCCCCCceEEEE
Q psy5016 103 YSLVSDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH------PN--VLEAYAYGVPDERMGEEVGIS 170 (485)
Q Consensus 103 ~~~~~D~~~~~~----~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~------~~--v~~~~~~~~~~~~~~~~~~~~ 170 (485)
.|++||+.+... ...+.|+||.+++|++.|++|++.+||+++.+. .+ |.|-.++.......+ .-.++
T Consensus 411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~ 489 (609)
T 4b2g_A 411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPG-HYVIY 489 (609)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSC-EEEEE
T ss_pred heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCC-cEEEE
Confidence 344449999874 467899999999999999999999999999842 23 344444432222222 33445
Q ss_pred EEEcC---CcCCCHHHHHHhhc
Q psy5016 171 IKLKE---NAKLNAYEDKSISS 189 (485)
Q Consensus 171 ~~~~~---~~~~~~~~l~~~l~ 189 (485)
+.+.. ....+.+.+.++|.
T Consensus 490 wEl~~~~~~~~~~~~~l~~~~~ 511 (609)
T 4b2g_A 490 WELLVKDSANSPSDELLGQCCL 511 (609)
T ss_dssp EEEEESCGGGCCCHHHHHHHHH
T ss_pred EEEecccccCCCCHHHHHHHHH
Confidence 55542 12345566665543
No 81
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.70 E-value=0.0031 Score=67.19 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=40.7
Q ss_pred ccccccccceEEEec----CccEEEeeccCceEEeCcEEeChHHHHHHHHcCC
Q psy5016 100 GFFYSLVSDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 148 (485)
Q Consensus 100 ~~~~~~~~D~~~~~~----~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~ 148 (485)
|+|.|++||+.+... ...+.|+||.++++++.|+++++.+||+++.+..
T Consensus 396 GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 396 GLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp SCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred ceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 355555669999875 4578999999999999999999999999999543
No 82
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.48 E-value=0.012 Score=62.56 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=55.3
Q ss_pred cccccccceEEEecC----ccEEEeeccCceEEeCcEEeChHHHHHHHHc------CCC--cceEEEEEeeCCCCCceEE
Q psy5016 101 FFYSLVSDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT------HPN--VLEAYAYGVPDERMGEEVG 168 (485)
Q Consensus 101 ~~~~~~~D~~~~~~~----g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~------~~~--v~~~~~~~~~~~~~~~~~~ 168 (485)
+|.|++||+.+...- ..+.|+||.++++++.|+++++.+||+++.. ..+ |.|-.++.......+ .-.
T Consensus 404 L~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv 482 (581)
T 4epl_A 404 LYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYA 482 (581)
T ss_dssp CSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEE
T ss_pred eeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEE
Confidence 445555599988742 4689999999999999999999999999985 223 445555442222222 334
Q ss_pred EEEEEcCCcCCCHHHHHHhh
Q psy5016 169 ISIKLKENAKLNAYEDKSIS 188 (485)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~l 188 (485)
+++.+.. ..+.+.+.++|
T Consensus 483 ~~wE~~~--~~~~~~l~~~~ 500 (581)
T 4epl_A 483 IFWEISG--ETNEDVLQDCC 500 (581)
T ss_dssp EEEEESS--CCCHHHHHHHH
T ss_pred EEEeecC--CCCHHHHHHHH
Confidence 4556642 24555555554
No 83
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=43.64 E-value=47 Score=24.71 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.1
Q ss_pred hHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCC
Q psy5016 427 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS 483 (485)
Q Consensus 427 p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~ 483 (485)
..++++.|.++|.|.+|..+.-+.. ..+-|.. .+.+++.+++.++|.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhc
Confidence 4789999999999999988764322 3344433 357788888876554
No 84
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=29.17 E-value=76 Score=23.21 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCC
Q psy5016 427 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS 483 (485)
Q Consensus 427 p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~ 483 (485)
..++++.|.++|.|.+|..+.-+.. ..+-+.. .+.+++.+++.++|.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-----~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-----DSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-----SSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-----CCHHHHHHHHHHHhc
Confidence 3789999999999999888754322 3333332 356777777765543
No 85
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=21.37 E-value=88 Score=23.60 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=30.1
Q ss_pred hHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhC
Q psy5016 427 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482 (485)
Q Consensus 427 p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l 482 (485)
..++++.|.++|.|.+|..+.-+.. ..+-+..+ +.+++.+++.+++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~-----d~~~l~~~l~~~l 60 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK-----DVEELDDVVTQGI 60 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES-----SGGGHHHHCCCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC-----CHHHHHHHHHHhc
Confidence 5789999999999999988854332 33444432 3456666655444
Done!