RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5016
(485 letters)
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 184 bits (470), Expect = 5e-54
Identities = 67/161 (41%), Positives = 80/161 (49%), Gaps = 37/161 (22%)
Query: 21 AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
K+VD + VP G GE+ +RG+ M GY+ D + T E I D WL TG
Sbjct: 184 VKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG---------- 233
Query: 81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
D + EDGY ++VGRIKDMIIRGGENIYP EI
Sbjct: 234 ---------------------------DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEI 266
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
EE + THP V EA GVPDER+GE V + LK A L
Sbjct: 267 EEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTE 307
Score = 144 bits (365), Expect = 5e-39
Identities = 49/88 (55%), Positives = 63/88 (71%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA GVPDER+GE V
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
+ LK A L +++ FC+G++++F
Sbjct: 294 AAFVVLKPGATLTEEELIAFCRGRLARF 321
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 179 bits (457), Expect = 3e-50
Identities = 67/165 (40%), Positives = 82/165 (49%), Gaps = 38/165 (23%)
Query: 20 QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
+ K+VD VP G GEL RG+ M GYW D +KT E I D W+ TG
Sbjct: 381 EVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG-------- 432
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D V+ E+GY +VGRIKDMIIRGGENIYP+
Sbjct: 433 -----------------------------DLAVMDEEGYVNIVGRIKDMIIRGGENIYPR 463
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
EIEEF+ THP + + GVPDE+ GEEV I L+ A L +
Sbjct: 464 EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEED 508
Score = 148 bits (377), Expect = 4e-39
Identities = 48/85 (56%), Positives = 63/85 (74%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
V+ E+GY +VGRIKDMIIRGGENIYP+EIEEF+ THP + + GVPDE+ GEEV
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495
Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
I L+ A L +D+R FC+GK++ +
Sbjct: 496 IILRPGATLTEEDVRDFCRGKIAHY 520
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 138 bits (351), Expect = 4e-36
Identities = 62/164 (37%), Positives = 77/164 (46%), Gaps = 38/164 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ K+VD +P G GEL++RG M GYW ++T E + D WLRTG
Sbjct: 305 EVKIVDDEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVL-TDGWLRTG--------- 354
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + EDGY +V R KDMII GG N+YP+E
Sbjct: 355 ----------------------------DIGYMDEDGYFYIVDRKKDMIIVGGFNVYPRE 386
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
IEE + +HP VLEA GVPD GE V + LKE A L E
Sbjct: 387 IEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEE 430
Score = 112 bits (282), Expect = 9e-27
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY +V R KDMII GG N+YP+EIEE + +HP VLEA GVPD GE V + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
KE A L +++ FC+ +++ +
Sbjct: 421 KEGASLTEEELIAFCRERLAAY 442
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 138 bits (349), Expect = 2e-35
Identities = 58/165 (35%), Positives = 73/165 (44%), Gaps = 37/165 (22%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++VD + V G GE+ +RG M GYW + T E D WLRTG
Sbjct: 356 EVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG--------- 406
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + EDGY +VGR+KD+II GGENIYP+E
Sbjct: 407 ----------------------------DLGYVDEDGYLYIVGRLKDLIISGGENIYPEE 438
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184
IE + HP V EA GVPDER GE V + LK +
Sbjct: 439 IEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAE 483
Score = 110 bits (277), Expect = 5e-26
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D + EDGY +VGR+KD+II GGENIYP+EIE + HP V EA GVPDER GE V
Sbjct: 407 DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERV 466
Query: 458 GISIKLKE--NAKLNADDIRTFCKGKVSKF 485
+ LK +A+L A+++R F + +++ +
Sbjct: 467 VAVVVLKPGGDAELTAEELRAFLRKRLALY 496
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 132 bits (334), Expect = 1e-34
Identities = 53/148 (35%), Positives = 69/148 (46%), Gaps = 38/148 (25%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++VD + R +P G GE+++RG M GYW + T E + D WL TG
Sbjct: 179 EVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHTG--------- 228
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
+G+ D EDGY +V R KDMII GGENIYP E
Sbjct: 229 ------------------DLGYL-----D-----EDGYLYIVDRKKDMIISGGENIYPAE 260
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
+E + HP V + GVPDE GE V
Sbjct: 261 VENVLLAHPAVADVAVIGVPDEEWGEAV 288
Score = 109 bits (276), Expect = 1e-26
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY +V R KDMII GGENIYP E+E + HP V + GVPDE GE V + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ A L+A+++ FC+ +++ +
Sbjct: 295 RPGATLDAEELIAFCRERLAGY 316
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 131 bits (333), Expect = 3e-33
Identities = 61/184 (33%), Positives = 79/184 (42%), Gaps = 43/184 (23%)
Query: 4 MNPTDLQFSTLSSSS------FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKT 57
N D T++ + + K+V+ VP G GELL+RG M GY++D + T
Sbjct: 325 FNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEAT 384
Query: 58 KETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGY 117
I D WL TG D L E+GY
Sbjct: 385 AAAIDADGWLHTG-------------------------------------DLGRLDEEGY 407
Query: 118 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
+V R KDM I GG N+YP E+EE + HP V EA GVPDER+GE + LK A
Sbjct: 408 LYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA 467
Query: 178 KLNA 181
+L
Sbjct: 468 ELTE 471
Score = 100 bits (251), Expect = 1e-22
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
L E+GY +V R KDM I GG N+YP E+EE + HP V EA GVPDER+GE
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460
Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
+ LK A+L +++ +C+ ++K+
Sbjct: 461 VVLKPGAELTEEELIAYCREHLAKY 485
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 131 bits (330), Expect = 7e-33
Identities = 61/155 (39%), Positives = 79/155 (50%), Gaps = 37/155 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ KVVD + VP G GEL RG+ M GYW + + T E+I D W+ TG
Sbjct: 383 EVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG--------- 433
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + E GY ++VGR KDMIIRGGENIYP+E
Sbjct: 434 ----------------------------DLATMDEQGYVRIVGRSKDMIIRGGENIYPRE 465
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 174
IEEF+ THP V + +GVPDE+ GEE+ ++L
Sbjct: 466 IEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLH 500
Score = 114 bits (287), Expect = 3e-27
Identities = 43/88 (48%), Positives = 61/88 (69%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V + +GVPDE+ GEE+
Sbjct: 434 DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
++L + +++R FCK +++ F
Sbjct: 494 VAWVRLHPGHAASEEELREFCKARIAHF 521
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 123 bits (312), Expect = 2e-30
Identities = 58/166 (34%), Positives = 77/166 (46%), Gaps = 40/166 (24%)
Query: 20 QAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+A++VD + +P G GE+++RG M GYW + T ETI WL TG
Sbjct: 349 EARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGG-WLHTG------- 400
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D + EDGY + RIKD+II GGENIYP
Sbjct: 401 ------------------------------DVGYIDEDGYLYITDRIKDVIISGGENIYP 430
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
+E+E+ + HP V E GVPDE+ GE + LK A L+A E
Sbjct: 431 RELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKE 476
Score = 109 bits (274), Expect = 1e-25
Identities = 40/85 (47%), Positives = 56/85 (65%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
+ EDGY + RIKD+II GGENIYP+E+E+ + HP V E GVPDE+ GE
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463
Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
+ LK A L+A ++R F +G+++KF
Sbjct: 464 VVLKPGATLDAKELRAFLRGRLAKF 488
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 120 bits (303), Expect = 2e-30
Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 38/172 (22%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++D + R +P G GE++IRG GY + + +E D W RTG
Sbjct: 181 EVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREA-FRDGWFRTG--------- 230
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D L EDGY + GRIK++I RGGE I P+E
Sbjct: 231 ----------------------------DLGYLDEDGYLFLTGRIKELINRGGEKISPRE 262
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDY 191
+EE + HP V EA +GVPDE GEEV ++ L+ ++K+ E + +
Sbjct: 263 VEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFARKR 314
Score = 106 bits (268), Expect = 1e-25
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 375 KKYLREEENITVPDSAGRSIFEK------DQFVLREDGYGQVVGRIKDMIIRGGENIYPK 428
YL E A R F D L EDGY + GRIK++I RGGE I P+
Sbjct: 209 AGYLNNPE-------ANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261
Query: 429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
E+EE + HP V EA +GVPDE GEEV ++ L+ ++K+ +++R F + +++ F
Sbjct: 262 EVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAF 318
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 118 bits (297), Expect = 9e-29
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 37/162 (22%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++VD VP G GELL RG + GY+ + D + RTG
Sbjct: 319 EIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTG--------- 369
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + DGY +VVGRIKD I RGGE I P+E
Sbjct: 370 ----------------------------DLVRIDADGYYRVVGRIKDQINRGGEKISPEE 401
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
IE + +HP V +A G+PDE +GE + + + A
Sbjct: 402 IENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTL 443
Score = 107 bits (270), Expect = 4e-25
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 377 YLREEENITVPDSAG--RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 434
Y E N G R+ D + DGY +VVGRIKD I RGGE I P+EIE +
Sbjct: 350 YRAPEHNARAFTDDGFYRT---GDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLL 406
Query: 435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VSKF 485
+HP V +A G+PDE +GE + + + A ++R F + + ++KF
Sbjct: 407 LSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKF 458
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 116 bits (293), Expect = 2e-28
Identities = 51/146 (34%), Positives = 63/146 (43%), Gaps = 38/146 (26%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
++VD + VP G GEL +RG LGY D E D W RTG
Sbjct: 274 RIVDDDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNTEAFTDDGWFRTG----------- 321
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
D L DGY ++ GR KD+IIRGGENI +EIE
Sbjct: 322 --------------------------DLGRLDADGYLRITGRKKDIIIRGGENISAREIE 355
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
+ + HP V E +PDER+GE V
Sbjct: 356 DLLLRHPAVAEVAVVAMPDERLGERV 381
Score = 95.7 bits (239), Expect = 3e-21
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
L DGY ++ GR KD+IIRGGENI +EIE+ + HP V E +PDER+GE V
Sbjct: 325 RLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAV 384
Query: 461 IKLKENAKLNADDIRTFCKGK-VSK 484
+ A L ++ + ++K
Sbjct: 385 VVPAPGASLTLAELTEHLAAQGLAK 409
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 114 bits (287), Expect = 3e-28
Identities = 53/163 (32%), Positives = 70/163 (42%), Gaps = 37/163 (22%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
+ +VVD + +P G GEL++RG M GYW + +T D W RTG
Sbjct: 178 VEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG-------- 229
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D L E+GY + GR KD+I GGEN+YP
Sbjct: 230 -----------------------------DLGYLDEEGYLYITGRSKDLIKVGGENVYPA 260
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
E+E + HP V EA GVPDE GE + + L+ A A
Sbjct: 261 EVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALA 303
Score = 92.7 bits (231), Expect = 1e-20
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D L E+GY + GR KD+I GGEN+YP E+E + HP V EA GVPDE GE +
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289
Query: 458 GISIKLKENAKLNADDIRTFCK 479
+ L+ A A++++ +
Sbjct: 290 VAFVVLRPGADALAEELKAHLR 311
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 114 bits (289), Expect = 7e-28
Identities = 45/166 (27%), Positives = 62/166 (37%), Gaps = 41/166 (24%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIR---GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
+ ++VD + R VP G GEL++R GY+ + T + + W TG
Sbjct: 254 VEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTG----- 307
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
D+ EDG+ V R KD I R GENI
Sbjct: 308 --------------------------------DRGRRDEDGFLYFVDRKKDAIRRRGENI 335
Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
E+E I HP V EA VP E +EV + L+ L+
Sbjct: 336 SSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDP 381
Score = 94.2 bits (235), Expect = 9e-21
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D+ EDG+ V R KD I R GENI E+E I HP V EA VP E +EV
Sbjct: 308 DRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEV 367
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
+ L+ L+ + + FC+ ++ F
Sbjct: 368 KAVVVLRPGETLDPEALLEFCRDRLPYF 395
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 114 bits (288), Expect = 8e-28
Identities = 42/139 (30%), Positives = 50/139 (35%), Gaps = 39/139 (28%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWL--RTGRYKKTS 76
+ KV+D VP G GEL IRG GY D + T E D W RTG
Sbjct: 311 VEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTG------ 364
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
D EDGY +++GR D + GE I
Sbjct: 365 -------------------------------DLGRWDEDGYLEILGRKDDQVKIRGERIE 393
Query: 137 PKEIEEFIQTHPNVLEAYA 155
P EIE + HP V EA
Sbjct: 394 PGEIEAVLLEHPGVAEAAV 412
Score = 71.2 bits (175), Expect = 3e-13
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 445
D EDGY +++GR D + GE I P EIE + HP V EA
Sbjct: 365 DLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 109 bits (274), Expect = 1e-25
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 18 SFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
S KV+D + +P G GEL ++G M GYW+ + T E + D WL+TG
Sbjct: 386 STLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG------- 438
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D +++EDGY ++V R KDMI+ G N+YP
Sbjct: 439 ------------------------------DIALIQEDGYMRIVDRKKDMILVSGFNVYP 468
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
E+E+ + P VL+ A GVPDE+ GE + + + +K L
Sbjct: 469 NELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTK 512
Score = 86.0 bits (213), Expect = 7e-18
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D +++EDGY ++V R KDMI+ G N+YP E+E+ + P VL+ A GVPDE+ GE +
Sbjct: 439 DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI 498
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
+ + +K L + + + ++ +
Sbjct: 499 KVFVVVKPGETLTKEQVMEHMRANLTGY 526
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 106 bits (267), Expect = 5e-25
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 39/164 (23%)
Query: 20 QAKVVDHNNR-IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
+ ++VD + + G GE+ +RG YW + T E D W +TG
Sbjct: 268 EVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTG-------- 319
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYP 137
D V+ EDGY +++GR D II+ GG +
Sbjct: 320 -----------------------------DVGVVDEDGYYRILGRKSDDIIKSGGYKVSA 350
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
EIEE + HP V E GVPD GE V + + A L
Sbjct: 351 LEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTL 394
Score = 93.5 bits (233), Expect = 1e-20
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 401 VLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 459
V+ EDGY +++GR D II+ GG + EIEE + HP V E GVPD GE V
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382
Query: 460 SIKLKENAKLNADDIRTFCKGKVSKF 485
+ + A L ++R + + K++ +
Sbjct: 383 VVVPEAGAALTLAELRAWAREKLAPY 408
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 105 bits (265), Expect = 2e-24
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 38/164 (23%)
Query: 19 FQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+AK+VD + + + GEL ++G M GY + + TKETI D WL TG
Sbjct: 325 VEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTG------- 377
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
IG+F D EDG +V R K++I G + P
Sbjct: 378 --------------------DIGYF-----D-----EDGNFYIVDRKKELIKYKGYQVPP 407
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
E+E + HP V +A G+PDE GE + LK +KL
Sbjct: 408 AELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTE 451
Score = 74.6 bits (184), Expect = 2e-14
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDG +V R K++I G + P E+E + HP V +A G+PDE GE + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
K +KL +++ + KV+K+
Sbjct: 444 KPGSKLTEQEVKDYVAKKVAKY 465
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 104 bits (261), Expect = 4e-24
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 40/156 (25%)
Query: 14 LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYK 73
+ + + Q +VVD P G PGELL+RG GYW Q T D W RTG
Sbjct: 310 IPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTG--- 366
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLRE-DGYGQVVGRIKDMIIRGG 132
R+ DG+ VV R KDM I GG
Sbjct: 367 -----------------------------------DIARRDADGFFWVVDRKKDMFISGG 391
Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 168
EN+YP EIE + HP + E G+ D + G EVG
Sbjct: 392 ENVYPAEIEAVLADHPGIRECAVVGMADAQWG-EVG 426
Score = 82.2 bits (203), Expect = 1e-16
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 379 REEENITVPDSAGRSIFEKDQFVLRE-DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 437
R + G F R+ DG+ VV R KDM I GGEN+YP EIE + H
Sbjct: 349 RPQATARAFTGDG--WFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADH 406
Query: 438 PNVLEAYAYGVPDERMGEEVG-ISIKLKENAKLNADDIRTFCKGKVSKF 485
P + E G+ D + G EVG ++I + A L+ + IR+ +++K+
Sbjct: 407 PGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSHLSTRLAKY 454
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 102 bits (257), Expect = 2e-23
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 38/164 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++D + R V G GE+ +RG M GYW ++T E D WL TG
Sbjct: 349 RVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD-------- 399
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
+A D EDG+ +V R KDMI+ GG N++P+E
Sbjct: 400 --VARE----------------------D-----EDGFYYIVDRKKDMIVTGGFNVFPRE 430
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
+E+ + HP V + GVPDE+ GE V + L+ A ++A E
Sbjct: 431 VEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAE 474
Score = 83.5 bits (207), Expect = 4e-17
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDG+ +V R KDMI+ GG N++P+E+E+ + HP V + GVPDE+ GE V + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464
Query: 464 KENAKLNADDIRTFCK 479
+ A ++A +++ K
Sbjct: 465 RPGAAVDAAELQAHVK 480
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 102 bits (257), Expect = 2e-23
Identities = 50/143 (34%), Positives = 65/143 (45%), Gaps = 37/143 (25%)
Query: 25 DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI 84
D + +P G PGE+ IRG M GYW +T + + D + RTG
Sbjct: 395 DDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG-------------- 440
Query: 85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 144
+G + E GY ++V R KDMI+ G N+YP EIEE +
Sbjct: 441 -------------DVGV----------MDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV 477
Query: 145 QTHPNVLEAYAYGVPDERMGEEV 167
+HP VLE A GVPDE GE V
Sbjct: 478 ASHPGVLEVAAVGVPDEHSGEAV 500
Score = 88.5 bits (220), Expect = 1e-18
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 387 PDSAGRSIFEKDQF------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 440
PD + + F V+ E GY ++V R KDMI+ G N+YP EIEE + +HP V
Sbjct: 424 PDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGV 483
Query: 441 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 479
LE A GVPDE GE V + + +K++ L +D++ FCK
Sbjct: 484 LEVAAVGVPDEHSGEAVKLFV-VKKDPALTEEDVKAFCK 521
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 100 bits (252), Expect = 1e-22
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 40/162 (24%)
Query: 22 KVVDHNN--RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
++VD + +P G GELL+RG GYW ++T ++ W RTG
Sbjct: 401 RIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDG-WFRTG--------- 450
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D V+ EDG+ ++V RIK++II GG N+YP E
Sbjct: 451 ----------------------------DVVVMEEDGFIRIVDRIKELIITGGFNVYPAE 482
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
+EE ++ HP V +A G+P E EEV ++ L+ A L+
Sbjct: 483 VEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDP 524
Score = 89.7 bits (223), Expect = 5e-19
Identities = 34/88 (38%), Positives = 58/88 (65%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A G+P E EEV
Sbjct: 451 DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV 510
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
++ L+ A L+ + +R +C+ ++++
Sbjct: 511 VAAVVLEPGAALDPEGLRAYCREHLTRY 538
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 97.7 bits (244), Expect = 2e-22
Identities = 47/150 (31%), Positives = 58/150 (38%), Gaps = 42/150 (28%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP-----DRWLRTGRYKKTSF 77
VVD + G GEL+ RG M GYW D + T E + P + L TG
Sbjct: 184 VVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTG------- 236
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D + E+GY VGR DMI G + P
Sbjct: 237 ------------------------------DLVRMDEEGYLYFVGRKDDMIKTRGYRVSP 266
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EIEE I HP V EA GVPD +G+ +
Sbjct: 267 TEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296
Score = 75.7 bits (187), Expect = 6e-15
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D + E+GY VGR DMI G + P EIEE I HP V EA GVPD +G+ +
Sbjct: 237 DLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296
Query: 458 GISIKLKENAKLNADDIRTFCK 479
+ + L+ ++ C+
Sbjct: 297 VAVVVSADGESLDEKELLKHCR 318
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 98.4 bits (245), Expect = 5e-22
Identities = 52/158 (32%), Positives = 66/158 (41%), Gaps = 38/158 (24%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
+++D N V G GELLIRG M YW T+ETI D WL TG
Sbjct: 329 ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTG----------- 376
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
D + EDG+ +VGR K+MII GGENIYP E+E
Sbjct: 377 --------------------------DLARVDEDGFVYIVGRKKEMIISGGENIYPLEVE 410
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
+ I +V E G + GE I K ++ L
Sbjct: 411 QVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVL 448
Score = 87.2 bits (216), Expect = 3e-18
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDG+ +VGR K+MII GGENIYP E+E+ I +V E G + GE I
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
K ++ L D+ C+ ++K+
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKY 464
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 97.6 bits (244), Expect = 5e-22
Identities = 50/163 (30%), Positives = 65/163 (39%), Gaps = 46/163 (28%)
Query: 10 QFSTLSSSSFQAKVVDHNNRIVPF-------GTPGELLIRGHCNMLGYWEDEQKTKETIG 62
Q +TL F AK+ + +P GE+L+RG LGY T
Sbjct: 228 QVATLKPDDFLAKL-GSVGKPLPGRELRIVNPQDGEILVRGPSLFLGYLPQGGLTPPLDE 286
Query: 63 PDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVG 122
D W TG +G+ D +GY V+G
Sbjct: 287 -DGWFHTG---------------------------DLGYL-----D-----AEGYLYVLG 308
Query: 123 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
R D+II GGENIYP+EIE + HP V EA GVPD+ G+
Sbjct: 309 RRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQ 351
Score = 92.6 bits (231), Expect = 2e-20
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 377 YLREEENITVPDSAGRSIFE-KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 435
YL + D G F D L +GY V+GR D+II GGENIYP+EIE +
Sbjct: 274 YLPQGGLTPPLDEDG--WFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLL 331
Query: 436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
HP V EA GVPD+ G+ + + ++ ++++ F K++K+
Sbjct: 332 QHPAVEEAAVVGVPDDEWGQRPVAFVVP-NDDPVSVEELQAFLADKLAKY 380
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 98.5 bits (246), Expect = 5e-22
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 38/164 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ +VVD + V G GE++ R MLGYW+D +KT E
Sbjct: 351 ETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAE-------------------- 390
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
A + G+F+S D V+ E+GY VV R KDMI GGEN+ +E
Sbjct: 391 -AF---------------RGGWFHS--GDLGVMDEEGYITVVDRKKDMIKTGGENVASRE 432
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
+EE + THP V E G+PD + E V + K A + E
Sbjct: 433 VEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDE 476
Score = 86.1 bits (214), Expect = 6e-18
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
V+ E+GY VV R KDMI GGEN+ +E+EE + THP V E G+PD + E V
Sbjct: 404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463
Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
+ K A + D++ C+ +++ F
Sbjct: 464 VVPKAGATVTEDELIAHCRARLAGF 488
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 98.4 bits (245), Expect = 6e-22
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 42/187 (22%)
Query: 4 MNPTDLQFST----LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
+NP L+ L S A + D ++ G GEL I+G M GYW+ ++T +
Sbjct: 372 INPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAK 431
Query: 60 TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQ 119
+ D WL TG + + +Q GF Y
Sbjct: 432 VMDADGWLHTGDIAR----------------MDEQ-----GFVY---------------- 454
Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
+V R KDMI+ G N+YP EIE+ I P VLE A GVPDE+ GE V + I +K++ L
Sbjct: 455 IVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-VKKDPAL 513
Query: 180 NAYEDKS 186
A + K+
Sbjct: 514 TAEDVKA 520
Score = 78.4 bits (193), Expect = 2e-15
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 379 REEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 438
R EE V D+ G + D + E G+ +V R KDMI+ G N+YP EIE+ I P
Sbjct: 425 RPEETAKVMDADGW-LHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMP 483
Query: 439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
VLE A GVPDE+ GE V + I +K++ L A+D++ + ++ +
Sbjct: 484 GVLEVAAVGVPDEKSGEIVKVVI-VKKDPALTAEDVKAHARANLTGY 529
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 95.3 bits (237), Expect = 8e-21
Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 37/146 (25%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
KV+D + +P G GEL I+G M GYW+ + T E + + W +TG
Sbjct: 398 KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG----------- 446
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
D V+ DG+ ++V R KD+II G N+YP EIE
Sbjct: 447 --------------------------DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE 480
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
+ + HP V A GVPDER GE V
Sbjct: 481 DVVMAHPKVANCAAIGVPDERSGEAV 506
Score = 76.0 bits (187), Expect = 1e-14
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V+ DG+ ++V R KD+II G N+YP EIE+ + HP V A GVPDER GE V
Sbjct: 447 DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAV 506
Query: 458 GISIKLKENAKLNADDIRTFCK 479
+ + ++ L+ ++++ +CK
Sbjct: 507 KLFVVARD-PGLSVEELKAYCK 527
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 93.5 bits (233), Expect = 2e-20
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 38/153 (24%)
Query: 14 LSSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRY 72
+ +AK+VD +P PGEL +RG M GY + + T ETI D WL TG
Sbjct: 334 RLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTG-- 391
Query: 73 KKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGG 132
+G+F D EDGY +V R+K++I G
Sbjct: 392 -------------------------DLGYF-----D-----EDGYLFIVDRLKELIKYKG 416
Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
+ P E+E + +HP + +A PDE GE
Sbjct: 417 FQVAPAELEALLLSHPEIADAAVIPYPDEEAGE 449
Score = 53.4 bits (129), Expect = 2e-07
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY +V R+K++I G + P E+E + +HP + +A PDE GE +
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457
Query: 464 KENAKLNADDIRTFCKGKVS 483
+ ++L+ D++ F +V+
Sbjct: 458 QPGSELSEDEVMQFVAKQVA 477
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 93.2 bits (232), Expect = 3e-20
Identities = 56/153 (36%), Positives = 72/153 (47%), Gaps = 38/153 (24%)
Query: 17 SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
S + K+VD + VP G PGEL ++G MLGYW+ + T E I D WL TG
Sbjct: 385 PSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATG------ 437
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
D V+ E+G+ ++V R KDMI+ G N+Y
Sbjct: 438 -------------------------------DIAVMDEEGFLRIVDRKKDMILVSGFNVY 466
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 169
P EIE+ + HP VLE A GVP E GE V I
Sbjct: 467 PNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKI 499
Score = 77.0 bits (190), Expect = 6e-15
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V+ E+G+ ++V R KDMI+ G N+YP EIE+ + HP VLE A GVP E GE V
Sbjct: 438 DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAV 497
Query: 458 GISIKLKENAKLNADDIRTFCK 479
I + +K++ L +++ T C+
Sbjct: 498 KIFV-VKKDPSLTEEELITHCR 518
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 92.7 bits (231), Expect = 5e-20
Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 41/170 (24%)
Query: 17 SSFQAKVVDHN-NRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYK 73
+ VVD + VP T GE+++RG+ M GY+++ + T+E W +G
Sbjct: 351 GLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFA-GGWFHSG--- 406
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
D V+ DGY ++ R KD+II GGE
Sbjct: 407 ----------------------------------DLAVVHPDGYIEIKDRSKDIIISGGE 432
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
NI E+E + HP VLEA PDE+ GE + LK A + E
Sbjct: 433 NISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEE 482
Score = 85.4 bits (212), Expect = 9e-18
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 375 KKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 434
K Y + E T AG D V+ DGY ++ R KD+II GGENI E+E +
Sbjct: 385 KGYYKNPEA-TEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVL 443
Query: 435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
HP VLEA PDE+ GE + LK A + +++ +C+ K++ F
Sbjct: 444 YKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEYCREKLAHF 494
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 90.1 bits (224), Expect = 2e-19
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 44/192 (22%)
Query: 4 MNPTD---LQFSTLSSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
NP D Q + A+V+D +P G GE+++RG GYW + T E
Sbjct: 242 FNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAE 301
Query: 60 T---IGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG 116
+ + R+ RTG +G+ + E+G
Sbjct: 302 SFIELDGKRFFRTG---------------------------DLGY----------IDEEG 324
Query: 117 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
Y + R+K MI G ++P E+E + HP VLE G PD R GE V + LK +
Sbjct: 325 YFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPD 384
Query: 177 AKLNAYEDKSIS 188
+ E+ I
Sbjct: 385 YRGKVTEEDIIE 396
Score = 69.7 bits (171), Expect = 8e-13
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+GY + R+K MI G ++P E+E + HP VLE G PD R GE V + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381
Query: 464 KENA--KLNADDIRTFCKGKVSKF 485
K + K+ +DI +C+ +++ +
Sbjct: 382 KPDYRGKVTEEDIIEWCRERMAAY 405
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 89.8 bits (223), Expect = 4e-19
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 41/165 (24%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRG---HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
F+A+VVD +++ +P G PGELL+R GY+ +KT E + W TG
Sbjct: 352 FEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA-WRNLWFHTG----- 405
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
D+ V DG+ + V RIKD I R GENI
Sbjct: 406 --------------------------------DRVVRDADGWFRFVDRIKDAIRRRGENI 433
Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
E+E+ + +HP V A + VP E +EV ++ L++ L
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALE 478
Score = 78.3 bits (193), Expect = 2e-15
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D+ V DG+ + V RIKD I R GENI E+E+ + +HP V A + VP E +EV
Sbjct: 406 DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV 465
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
++ L++ L + C+ +++ F
Sbjct: 466 MAAVVLRDGTALEPVALVRHCEPRLAYF 493
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 88.8 bits (221), Expect = 7e-19
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDG V GR DMI+ GGEN++P E+E+ + HP+V+EA GV DE G+ + +
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
A L+ D I+ + + ++++
Sbjct: 499 APGAALDEDAIKDYVRDNLARY 520
Score = 77.7 bits (192), Expect = 3e-15
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 41/160 (25%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
K++D N VP G G + + GY + + K+ I D L +G
Sbjct: 388 KILDENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQII--DGLLSSG----------- 432
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
+G+F D EDG V GR DMI+ GGEN++P E+E
Sbjct: 433 ----------------DVGYF-----D-----EDGLLFVDGRDDDMIVSGGENVFPAEVE 466
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
+ + HP+V+EA GV DE G+ + + A L+
Sbjct: 467 DLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDE 506
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 86.0 bits (214), Expect = 5e-18
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 40/127 (31%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+L+RG M GY+++ + T E + D WL TG
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTG-------------------------- 316
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYA 155
D L EDG+ + R KD+I+ GG+NI P+ IE ++ P + +A
Sbjct: 317 -----------DIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVV 365
Query: 156 YGVPDER 162
G D+R
Sbjct: 366 VG--DDR 370
Score = 52.5 bits (127), Expect = 3e-07
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 404 EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 452
EDG+ + R KD+I+ GG+NI P+ IE ++ P + +A G D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 86.1 bits (213), Expect = 6e-18
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 405 DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
D G V GR+ DMII GGENI+P E+E + P V E G+PDER G+ V +
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446
Query: 463 LKENAKLNADDIRTFC 478
+E L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462
Score = 79.5 bits (196), Expect = 7e-16
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE 142
L Q +++ + SD V+ G +++GR+ DMII GGENI+P E+E
Sbjct: 358 TFTGYLNQ-PQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVER 416
Query: 143 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
+ P V E G+PDER G+ V + +E L+A
Sbjct: 417 VLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSA 455
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 85.4 bits (212), Expect = 8e-18
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 39/148 (26%)
Query: 19 FQAKV-VDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
F ++ ++ + +VP GE++++G GY E T+ET D W +TG
Sbjct: 314 FPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTG------- 365
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
IG+ L E+G+ V+ R D+II GGENIYP
Sbjct: 366 --------------------DIGY----------LDEEGFLYVLDRRSDLIISGGENIYP 395
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGE 165
EIEE + +HP V EA GVPD++ G+
Sbjct: 396 AEIEEVLLSHPGVAEAGVVGVPDDKWGQ 423
Score = 80.8 bits (200), Expect = 3e-16
Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L E+G+ V+ R D+II GGENIYP EIEE + +HP V EA GVPD++ G +V ++
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
+ ++ ++ +++R FC+ K++K+
Sbjct: 429 -VVKSGEVTEEELRHFCEEKLAKY 451
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 84.2 bits (209), Expect = 3e-17
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 49/163 (30%)
Query: 17 SSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKET------IGPDRWLRT 69
+ ++VD R +P G GE+ +RG GYW + T ET WLRT
Sbjct: 362 PGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRT 421
Query: 70 GRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII 129
G +GF + DG V GR+KD+II
Sbjct: 422 G---------------------------DLGFLH-----------DGELYVTGRLKDLII 443
Query: 130 RGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 169
G N YP++IE ++ L A A+ V + E + +
Sbjct: 444 IRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485
Score = 54.1 bits (131), Expect = 9e-08
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 459
V GR+KD+II G N YP++IE ++ L A A+ V + E + +
Sbjct: 434 VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 84.1 bits (208), Expect = 3e-17
Identities = 48/146 (32%), Positives = 63/146 (43%), Gaps = 38/146 (26%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
A+VVD N VP G GE++ R M GYW + + T E
Sbjct: 355 AARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG---------------- 398
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
G+F+S D E+GY VV R KDMII GGENIY E
Sbjct: 399 --------------------GWFHS--GDLVRQDEEGYVWVVDRKKDMIISGGENIYCAE 436
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
+E + +HP+++E G DE+ GE
Sbjct: 437 VENVLASHPDIVEVAVIGRADEKWGE 462
Score = 73.3 bits (180), Expect = 8e-14
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 462
E+GY VV R KDMII GGENIY E+E + +HP+++E G DE+ GE V ++
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470
Query: 463 LKENAKLNADDIRTFCKGKVSKF 485
++A L +D+ F +++++
Sbjct: 471 RNDDAALTLEDLAEFLTDRLARY 493
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 83.9 bits (208), Expect = 3e-17
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 40/144 (27%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI-GPDRWLRTGRYKKTSF 77
++ K+VD + V G GEL +RG + GYW +KT+ET G W RTG
Sbjct: 339 YEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVG--EWTRTG------- 389
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D++ EDGY GR DM+ G + P
Sbjct: 390 ------------------------------DKYYRDEDGYYWYCGRSDDMLKVSGIWVSP 419
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDE 161
E+E+ + HP VLEA G DE
Sbjct: 420 FEVEDALLQHPAVLEAAVVGAEDE 443
Score = 56.9 bits (138), Expect = 1e-08
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D++ EDGY GR DM+ G + P E+E+ + HP VLEA G DE +
Sbjct: 390 DKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKP 449
Query: 458 GISIKLKENAKLN---ADDIRTFCKGKVSKF 485
+ LK+ + + +++ F K K++ +
Sbjct: 450 KAFVVLKDGYQPSPELETELKDFVKDKLAPY 480
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 82.8 bits (205), Expect = 4e-17
Identities = 46/144 (31%), Positives = 63/144 (43%), Gaps = 38/144 (26%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
++A++VD + R VP GT G+L +RG GYW +KT+ T+ D WLRTG
Sbjct: 269 YEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTG-------- 319
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D+F DG+ + GR DMI G+ + P
Sbjct: 320 -----------------------------DRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350
Query: 139 EIEEFIQTHPNVLEAYAYGVPDER 162
E+E + HP V EA VPDE
Sbjct: 351 EVEAALGEHPAVAEAAVVAVPDED 374
Score = 60.8 bits (148), Expect = 5e-10
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 365 MDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGEN 424
S A Y L E+ T+ D R+ D+F DG+ + GR DMI G+
Sbjct: 293 GPSLAPGYWN---LPEKTQRTLRDGWLRT---GDRFSRDADGWYRYQGRADDMIKVSGQW 346
Query: 425 IYPKEIEEFIQTHPNVLEAYAYGVPDERMG----------EEVGISIKLKENAKLNADDI 474
+ P E+E + HP V EA VPDE I L D+
Sbjct: 347 VSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLL-------ERDL 399
Query: 475 RTFCKGKVSKF 485
F + +++ +
Sbjct: 400 HRFLRERLAPY 410
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 83.0 bits (206), Expect = 5e-17
Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 40/167 (23%)
Query: 19 FQAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
+ ++VD +P T GEL++RG Y++D +KT+E + D W RTG
Sbjct: 350 VELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWFRTG------ 402
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
D V+ EDGY Q+ R KD+I GGE I
Sbjct: 403 -------------------------------DVAVIDEDGYIQITDRAKDVIKSGGEWIS 431
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
E+E + HP V EA GVP E+ GE + LK AK+ E
Sbjct: 432 SVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEE 478
Score = 71.5 bits (176), Expect = 3e-13
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY Q+ R KD+I GGE I E+E + HP V EA GVP E+ GE + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
K AK+ +++ KV+K+
Sbjct: 469 KPGAKVTEEELLEHLAKKVAKW 490
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 83.0 bits (206), Expect = 6e-17
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L EDGY + R DMII GG NIYP+EIE + THP V + +GVPDE MGE V +
Sbjct: 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV 438
Query: 462 KLKENAKLN---ADDIRTFCKGKVSKF 485
+ + A A ++ + +G+++ +
Sbjct: 439 QPADGADAGDALAAELIAWLRGRLAHY 465
Score = 78.4 bits (194), Expect = 2e-15
Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 37/148 (25%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ +++D + +P G G + Y D +KT P W+ G
Sbjct: 324 EVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVG--------- 374
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
+G+ L EDGY + R DMII GG NIYP+E
Sbjct: 375 ------------------DVGY----------LDEDGYLYLTDRKSDMIISGGVNIYPQE 406
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
IE + THP V + +GVPDE MGE V
Sbjct: 407 IENLLVTHPKVADVAVFGVPDEEMGERV 434
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 82.8 bits (205), Expect = 8e-17
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L G+ + GR DM I GG N+YP+EIEE + THP V E GVPD G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462
Query: 462 -KLKENAKLNADDIRTFCKGKVSKF 485
++ A ++ ++ + GKV+++
Sbjct: 463 CVARDGAPVDEAELLAWLDGKVARY 487
Score = 78.9 bits (195), Expect = 1e-15
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++ D R +P G GE+ + G GY+ + + + D W RTG
Sbjct: 350 EVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTG--------- 399
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
+G L G+ + GR DM I GG N+YP+E
Sbjct: 400 ------------------DLGH----------LDARGFLYITGRASDMYISGGSNVYPRE 431
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISI-KLKENAKLNAYE 183
IEE + THP V E GVPD G EVG+++ ++ A ++ E
Sbjct: 432 IEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAVCVARDGAPVDEAE 475
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 82.6 bits (204), Expect = 8e-17
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L G + GRIK++I RGGE I P+ +E + +HPNV+EA +GVPD+ GE V I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
+E+A A+++ FC+ +++ F
Sbjct: 478 VPRESAPPTAEELVQFCRERLAAF 501
Score = 78.8 bits (194), Expect = 1e-15
Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 38/168 (22%)
Query: 16 SSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
S+ Q ++V + +P G GE+ +RG + GY D T D WLRTG
Sbjct: 360 STGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTG----- 413
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
D L G + GRIK++I RGGE I
Sbjct: 414 --------------------------------DLGSLSAAGDLSIRGRIKELINRGGEKI 441
Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
P+ +E + +HPNV+EA +GVPD+ GE V I +E+A A E
Sbjct: 442 SPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEE 489
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 82.4 bits (203), Expect = 9e-17
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D L G +VGR DMII GGEN+YP+ +E + HP V + GVPDER G +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
+ L + ++A +R + K +VS+F
Sbjct: 462 AAFVVLHPGSGVDAAQLRDYLKDRVSRF 489
Score = 65.0 bits (158), Expect = 3e-11
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 108 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
D L G +VGR DMII GGEN+YP+ +E + HP V + GVPDER G +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461
Query: 168 GISIKLKENAKLNA 181
+ L + ++A
Sbjct: 462 AAFVVLHPGSGVDA 475
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 82.3 bits (203), Expect = 9e-17
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 38/155 (24%)
Query: 24 VDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMA 83
+D +++P G GEL IRG GYW +++ E DR+L TG
Sbjct: 381 LDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TG------------- 426
Query: 84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 143
IG+ + DGY +V R KDMII GG N+YP+ IE+
Sbjct: 427 --------------DIGY----------MDTDGYFFLVDRKKDMIISGGFNVYPQMIEQA 462
Query: 144 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
I HP V E G+PD+ GE +KL+ AK
Sbjct: 463 IYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK 497
Score = 81.5 bits (201), Expect = 2e-16
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
DGY +V R KDMII GG N+YP+ IE+ I HP V E G+PD+ GE +KL
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492
Query: 464 KENAK-LNADDIRTFCKGKVSK 484
+ AK + D++R F GK+ K
Sbjct: 493 RPGAKPFSLDELRAFLAGKLGK 514
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 81.7 bits (202), Expect = 2e-16
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 37/163 (22%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
KVVD + +P G GE RG +GY ++ + T + + W
Sbjct: 367 KVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGW--------------- 411
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
+YS D + E GY ++ GR KD+I+RGGENI +E+E
Sbjct: 412 --------------------YYS--GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE 449
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184
+ + HP + +A +PDER+GE + LK E+
Sbjct: 450 DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEE 492
Score = 70.9 bits (174), Expect = 4e-13
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E GY ++ GR KD+I+RGGENI +E+E+ + HP + +A +PDER+GE + L
Sbjct: 422 EAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481
Query: 464 KENA---KLNADDIRTFCKGKVSK 484
K L + + F + +V+K
Sbjct: 482 KAPHHSLTL-EEVVAFFSRKRVAK 504
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 80.4 bits (199), Expect = 5e-16
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 57/171 (33%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+L+RG M GY+++ + T E D W RTG
Sbjct: 421 GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG-------------------------- 454
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYA 155
D L EDGY + GR K++I G+NI P+ IE + P + +
Sbjct: 455 -----------DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICV 503
Query: 156 YG----------VPDERMGEEVGISIKLK---------ENAKLNAYEDKSI 187
G VPD E+ S+ + KL +
Sbjct: 504 VGDDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRV 554
Score = 51.5 bits (124), Expect = 7e-07
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 398 DQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG--------- 447
D L EDGY + GR K++I G+NI P+ IE + P + + G
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVAL 514
Query: 448 -VPDERMGEEVGISIKLKENA 467
VPD E+ S+ +A
Sbjct: 515 IVPDFDALEKWAESLNKVISA 535
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 80.0 bits (198), Expect = 6e-16
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 37/144 (25%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
V D + +P G G L+ RG GY+ ++ ++ ++F
Sbjct: 366 WVADADGNPLPQGEVGRLMTRGPYTFRGYY----------------KSPQHNASAF---- 405
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
GF+ S D + DGY VVGR KD I RGGE I +EIE
Sbjct: 406 ---------------DANGFYCS--GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448
Query: 142 EFIQTHPNVLEAYAYGVPDERMGE 165
+ HP V+ A + DE MGE
Sbjct: 449 NLLLRHPAVIHAALVSMEDELMGE 472
Score = 71.9 bits (177), Expect = 2e-13
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 392 RSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
S F+ + F + DGY VVGR KD I RGGE I +EIE + HP V+ A
Sbjct: 402 ASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAA 461
Query: 445 AYGVPDERMGE 455
+ DE MGE
Sbjct: 462 LVSMEDELMGE 472
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 79.5 bits (197), Expect = 8e-16
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E GY +VGR KD+II GG N+YPKE+E I P V+E+ GVP GE V +
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
K A L+ I KG++++F
Sbjct: 449 KPGAALDEAAILAALKGRLARF 470
Score = 78.4 bits (194), Expect = 2e-15
Identities = 44/149 (29%), Positives = 58/149 (38%), Gaps = 38/149 (25%)
Query: 20 QAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
+V D +P G G + ++G GYW +KT E D + TG
Sbjct: 331 SLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG-------- 382
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D + E GY +VGR KD+II GG N+YPK
Sbjct: 383 -----------------------------DLGKIDERGYVHIVGRGKDLIISGGYNVYPK 413
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
E+E I P V+E+ GVP GE V
Sbjct: 414 EVEGEIDELPGVVESAVIGVPHPDFGEGV 442
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 79.6 bits (197), Expect = 8e-16
Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
DGY + GR KD+IIRGG NI P IEE + HP V A A G PD GE ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516
Query: 464 KENAKLNADDIRTFCKGKVS 483
K A ++ F + ++
Sbjct: 517 KPGASATEAELLAFARDHIA 536
Score = 77.3 bits (191), Expect = 5e-15
Identities = 44/151 (29%), Positives = 51/151 (33%), Gaps = 43/151 (28%)
Query: 20 QAKVV-----DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
+ +VV R G L I G GY E + D WL TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE-DGWLNTG---- 450
Query: 75 TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
D + DGY + GR KD+IIRGG N
Sbjct: 451 ---------------------------------DLGRIDADGYFWLTGRAKDLIIRGGHN 477
Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
I P IEE + HP V A A G PD GE
Sbjct: 478 IDPAAIEEALLRHPAVALAAAVGRPDAHAGE 508
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 78.7 bits (194), Expect = 2e-15
Identities = 43/161 (26%), Positives = 60/161 (37%), Gaps = 44/161 (27%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
G +L RG MLGYW +T + D WL TG
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG-------------------------- 419
Query: 97 QQIGFFYSLVSDQFVLREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
IG+ D G + +GR D I GGEN+YP+E+E + HP V
Sbjct: 420 -DIGWI------------DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVV 466
Query: 155 AYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFE 195
GVPD R+ E V ++L++ + D +
Sbjct: 467 VVGVPDSRLTEMVVACVRLRDGWI---WSDNEKENAKKNLT 504
Score = 67.5 bits (165), Expect = 6e-12
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 405 DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
D G + +GR D I GGEN+YP+E+E + HP V GVPD R+ E V ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484
Query: 463 LKEN 466
L++
Sbjct: 485 LRDG 488
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 78.6 bits (194), Expect = 2e-15
Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 18 SFQAKVVDHNNRIVPFGTPGELLIRG---HCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
++A++ D +NR +P G GE+ I+G Y+ D + T + + D WL TG
Sbjct: 348 CYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTG- 406
Query: 75 TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
Y + GFFY V R +MI RGGEN
Sbjct: 407 ----Y----------------VDEEGFFY----------------FVDRRCNMIKRGGEN 430
Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
+ E+E I THP + + G+ D E + + L E L
Sbjct: 431 VSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL 475
Score = 63.9 bits (156), Expect = 7e-11
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+G+ V R +MI RGGEN+ E+E I THP + + G+ D E + + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
E L+ ++ FC+ ++KF
Sbjct: 470 NEGETLSEEEFFAFCEQNMAKF 491
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 77.8 bits (192), Expect = 3e-15
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 39/146 (26%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
+VVD + +P G G L +RG N GY + Q D W TG
Sbjct: 378 RVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTG----------- 424
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
D + DGY ++ GR KD+IIRGGENI EIE
Sbjct: 425 --------------------------DLARIDADGYIRISGRSKDVIIRGGENIPVVEIE 458
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
+ HP + + PDER+GE
Sbjct: 459 ALLYRHPAIAQVAIVAYPDERLGERA 484
Score = 66.6 bits (163), Expect = 1e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
DGY ++ GR KD+IIRGGENI EIE + HP + + PDER+GE + +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491
Query: 465 ENAKLNADDIRTFCKGK 481
L+ +++ F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 76.6 bits (189), Expect = 4e-15
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
DGY + GR KD+IIRGG NI P+ IEE + HP V A A G PD GE ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305
Query: 464 KENAKLNADDIRTFCK 479
K A + ++ F K
Sbjct: 306 KPGATVTEGELLAFVK 321
Score = 75.4 bits (186), Expect = 7e-15
Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 43/151 (28%)
Query: 20 QAKVVDHN-----NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
+ +V + R G G L IRG GY D + D WL TG
Sbjct: 185 RVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLE-DGWLNTG---- 239
Query: 75 TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
D + DGY + GR KD+IIRGG N
Sbjct: 240 ---------------------------------DLGRIDADGYLWLTGRAKDLIIRGGHN 266
Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
I P+ IEE + HP V A A G PD GE
Sbjct: 267 IDPQMIEEALLRHPAVALAAAVGRPDAYAGE 297
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 77.0 bits (190), Expect = 4e-15
Identities = 43/153 (28%), Positives = 58/153 (37%), Gaps = 42/153 (27%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCN----MLGYWEDEQKTKETIGPDRWLRTGRYKK 74
++ ++D +P G G++ +R GY +D +KT+ TI D W TG
Sbjct: 258 YRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-WYLTGD--- 313
Query: 75 TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
AI+ EDGY VGR D+I G
Sbjct: 314 -------RAIK---------------------------DEDGYFWFVGRADDVIKSSGYR 339
Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
I P E+E + HP V EA G PD GE V
Sbjct: 340 IGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372
Score = 54.7 bits (132), Expect = 6e-08
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
EDGY VGR D+I G I P E+E + HP V EA G PD GE V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 77.1 bits (190), Expect = 5e-15
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 41/167 (24%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ +VVD + V G GELL RG + GY+ + D
Sbjct: 369 EVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDAD--------------- 413
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
GF+ S D DGY V GR+KD I RGGE I +E
Sbjct: 414 --------------------GFYRS--GDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEE 451
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN----AKLNAY 182
+E + HP V +A +PDE +GE+ I +KE A+L +
Sbjct: 452 VENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRF 498
Score = 66.7 bits (163), Expect = 1e-11
Identities = 42/109 (38%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 372 YHYKKYLR-EEENITVPDSAG--RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 428
Y + Y R E N D+ G RS D DGY V GR+KD I RGGE I +
Sbjct: 394 YTIRGYYRAPEHNARAFDADGFYRS---GDLVRRDPDGYLVVEGRVKDQINRGGEKIAAE 450
Query: 429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF 477
E+E + HP V +A +PDE +GE+ I +KE L A +R F
Sbjct: 451 EVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-PPLRAAQLRRF 498
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 75.9 bits (187), Expect = 1e-14
Identities = 46/146 (31%), Positives = 60/146 (41%), Gaps = 39/146 (26%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDR-WLRTGRYKKTSFLYSA 81
++D + +P G PG + G Y D KT E PD W G
Sbjct: 340 ILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVG----------- 387
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
IG+ + EDGY + R MII GG NIYP+E E
Sbjct: 388 ----------------DIGY----------VDEDGYLYLTDRAAFMIISGGVNIYPQEAE 421
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
+ THP V +A +GVP+E +GEEV
Sbjct: 422 NLLITHPKVADAAVFGVPNEDLGEEV 447
Score = 74.3 bits (183), Expect = 3e-14
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY + R MII GG NIYP+E E + THP V +A +GVP+E +GEEV ++
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQP 453
Query: 464 KENAKLNAD---DIRTFCKGKVSKF 485
+ ++ FC+ ++S+
Sbjct: 454 VDGVDPGPALAAELIAFCRQRLSRQ 478
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 75.1 bits (185), Expect = 2e-14
Identities = 49/155 (31%), Positives = 56/155 (36%), Gaps = 40/155 (25%)
Query: 23 VVDHNNRIVPFGTPGELLI-RGH-CNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
VVD R VP G GE+ + R LGYW + + T WL TG
Sbjct: 273 VVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTG---------- 321
Query: 81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
D DGY GR D+I G I P EI
Sbjct: 322 ---------------------------DLGRRDADGYLWFKGRADDVIKSSGYRIGPAEI 354
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
EE + HP VLEA GVPD GE V + L E
Sbjct: 355 EECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAE 389
Score = 61.6 bits (150), Expect = 3e-10
Identities = 29/62 (46%), Positives = 32/62 (51%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
DGY GR D+I G I P EIEE + HP VLEA GVPD GE V + L
Sbjct: 328 ADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVL 387
Query: 464 KE 465
E
Sbjct: 388 AE 389
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 74.2 bits (183), Expect = 2e-14
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+ V +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
+L+ A L+ ++R C+ ++ +
Sbjct: 316 QLRAGAGLDLAELRDHCRQHLAGY 339
Score = 71.9 bits (177), Expect = 1e-13
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 37/166 (22%)
Query: 20 QAKVVDHNNRIVPFGTP--GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
V+D + VP G+ G + G LGY++D +KT +T
Sbjct: 197 DTVVLDEDGSEVPPGSGEVGWIARGGRVP-LGYYKDPEKTAKT----------------- 238
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
+ + R Y++ D + DG ++GR I GGE ++P
Sbjct: 239 -FREIDGVR----------------YAVPGDFARVEADGTITLLGRGSVCINTGGEKVFP 281
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
+E+EE ++ HP+V +A GVPDER G+ V ++L+ A L+ E
Sbjct: 282 EEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAE 327
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 74.9 bits (184), Expect = 2e-14
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 38/160 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ ++ D R +P GE+ +RG GYW+D +KT E D W R+G
Sbjct: 329 EIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-WFRSG--------- 378
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
+G+ L E+G+ + R KDMII GGENI E
Sbjct: 379 ------------------DVGY----------LDEEGFLYLTDRKKDMIISGGENIASSE 410
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
+E I P V EA GV D+R GE + + L A L
Sbjct: 411 VERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATL 450
Score = 71.1 bits (174), Expect = 4e-13
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L E+G+ + R KDMII GGENI E+E I P V EA GV D+R GE + +
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
L A L + + C+ +++ F
Sbjct: 443 VLNPGATLTLEALDRHCRQRLASF 466
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 74.6 bits (184), Expect = 3e-14
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
VL DGY ++ R KD+II GGENI E+E+ + HP VL A PD + GE
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF 484
Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
++LK+ A ++I C+ ++ F
Sbjct: 485 VELKDGASATEEEIIAHCREHLAGF 509
Score = 70.0 bits (172), Expect = 1e-12
Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 38/149 (25%)
Query: 35 TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94
T GE++ RG+ M GY ++ + T+E W TG
Sbjct: 387 TIGEIMFRGNIVMKGYLKNPKATEEAFA-GGWFHTG------------------------ 421
Query: 95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
D VL DGY ++ R KD+II GGENI E+E+ + HP VL A
Sbjct: 422 -------------DLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAA 468
Query: 155 AYGVPDERMGEEVGISIKLKENAKLNAYE 183
PD + GE ++LK+ A E
Sbjct: 469 VVAKPDPKWGEVPCAFVELKDGASATEEE 497
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 74.0 bits (182), Expect = 5e-14
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 392 RSIFEKDQFV-------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
R+ ++ F+ L DGY + R +DM+I GG NIYP EIE + P V +
Sbjct: 372 RAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCA 431
Query: 445 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
+G+PD GE + ++ + A L+ DIR K +++ +
Sbjct: 432 VFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGY 472
Score = 65.5 bits (160), Expect = 3e-11
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 39/163 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNML-GYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
+ + VD + R +P G GE+ R N Y +K E I ++ +G
Sbjct: 334 ELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE-IDRGGFITSG-------- 384
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
+G+ L DGY + R +DM+I GG NIYP
Sbjct: 385 -------------------DVGY----------LDADGYLFLCDRKRDMVISGGVNIYPA 415
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
EIE + P V + +G+PD GE + ++ + A L+
Sbjct: 416 EIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDE 458
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 73.5 bits (181), Expect = 7e-14
Identities = 48/164 (29%), Positives = 60/164 (36%), Gaps = 41/164 (25%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGH--CNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+ VD VP G GEL++R L YW D ++ KE RW RTG
Sbjct: 351 AVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTG------- 401
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D EDGY + GR D+I G+ I P
Sbjct: 402 ------------------------------DWAERDEDGYFWLHGRSDDVIKVSGKRIGP 431
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
EIE + HP V EA GVPD G+ V + L + N
Sbjct: 432 LEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNE 475
Score = 60.8 bits (148), Expect = 8e-10
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D EDGY + GR D+I G+ I P EIE + HP V EA GVPD G+ V
Sbjct: 402 DWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIV 461
Query: 458 GISIKLKENAKLN--ADDIRTFCKGKVSKF 485
+ L + N A++IR +
Sbjct: 462 LAFVVLAAGVEPNELAEEIRRHVARNIGPH 491
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 73.3 bits (180), Expect = 7e-14
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 37/156 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ +VVD + V G G LL RG GY++ + +
Sbjct: 362 EVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE--------------- 406
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
GF+Y+ D L +GY VVGR KD I RGGE I +E
Sbjct: 407 --------------------GFYYT--GDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEE 444
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
IE + HP V +A +PDE +GE+ I +++
Sbjct: 445 IENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD 480
Score = 63.3 bits (154), Expect = 1e-10
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 372 YHYKKYLR-EEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 430
Y ++ Y + E N D+ G D L +GY VVGR KD I RGGE I +EI
Sbjct: 387 YTFRGYYKAPEHNAAAFDAEGFYY-TGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEI 445
Query: 431 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 480
E + HP V +A +PDE +GE+ I +++ A L A +R F +
Sbjct: 446 ENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA-LKAAQLRRFLRE 494
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 72.5 bits (178), Expect = 1e-13
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+G+ +VGR K+MI+ GG NI+P+EIE + HP V E GVPD GE+ IK
Sbjct: 373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ +++FC ++S F
Sbjct: 433 SATKQ----QLKSFCLQRLSSF 450
Score = 65.2 bits (159), Expect = 3e-11
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 106 VSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
V D E+G+ +VGR K+MI+ GG NI+P+EIE + HP V E GVPD GE
Sbjct: 365 VRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGE 424
Query: 166 EVGISIKLKENAK 178
+ IK +
Sbjct: 425 KPVAIIKGSATKQ 437
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 72.5 bits (178), Expect = 1e-13
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 375 KKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 434
K YL + E + G D L +G+ V+GR D+II GGENIYP+EIE +
Sbjct: 304 KGYLYQGELTPAFEQQG-WFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVL 362
Query: 435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
HP + EA PD G +V ++ + + ++ + + K++K+
Sbjct: 363 YQHPGIQEAVVVPKPDAEWG-QVPVAY-IVSESDISQAKLIAYLTEKLAKY 411
Score = 69.8 bits (171), Expect = 8e-13
Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 38/128 (29%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE++++G M GY + T W TG
Sbjct: 293 GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTG-------------------------- 325
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
IG L +G+ V+GR D+II GGENIYP+EIE + HP + EA
Sbjct: 326 -DIGE----------LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVV 374
Query: 157 GVPDERMG 164
PD G
Sbjct: 375 PKPDAEWG 382
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 72.3 bits (178), Expect = 1e-13
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
++VD ++P T G + I+G GY+ + + TK++I PD WL+TG
Sbjct: 326 RIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTG----------- 374
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
+GF +G + GR KD+II G+N YP +IE
Sbjct: 375 ----------------DLGFLR-----------NGRLVITGRAKDIIIVNGQNYYPHDIE 407
Query: 142 EFIQTHPNVL--EAYAYGVPDERMG-EEVGISIKLKENAK 178
+ + A GV DE+ EEV I ++ +++
Sbjct: 408 RVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLD 447
Score = 48.0 bits (115), Expect = 7e-06
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 460
+G + GR KD+II G+N YP +IE + + A GV DE+ EEV I
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439
Query: 461 IKLKENAK 468
++ +++
Sbjct: 440 VEYRQSLD 447
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 71.7 bits (176), Expect = 2e-13
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L E+G VVGR +MI+ GGEN+YP E+E+ + THP+V EA GV DE+ G+ + +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485
Query: 462 KLKENAKLNADDIRT 476
LK A + ++
Sbjct: 486 VLKPGASATPETLKQ 500
Score = 68.6 bits (168), Expect = 2e-12
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 171
L E+G VVGR +MI+ GGEN+YP E+E+ + THP+V EA GV DE+ G+ + +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485
Query: 172 KLKENA 177
LK A
Sbjct: 486 VLKPGA 491
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 71.5 bits (175), Expect = 3e-13
Identities = 45/161 (27%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ KV+D N + G G LL+RG N GY + + + W TG
Sbjct: 374 EVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLN--STDAEGWFDTG--------- 422
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D +GY ++ GR KD+IIRGGENI E
Sbjct: 423 ----------------------------DLAFQDAEGYIRINGRSKDVIIRGGENIPVVE 454
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
IE + HP V + PDER+GE + K L+
Sbjct: 455 IENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD 495
Score = 65.7 bits (160), Expect = 2e-11
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
+GY ++ GR KD+IIRGGENI EIE + HP V + PDER+GE + K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489
Query: 465 ENAKLNADDIRTFCKGK 481
L+ + F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 71.1 bits (175), Expect = 4e-13
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 21 AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKE---TIGPDRWLRTGRYKKTS 76
A+V+D +P G GE+++ G GYW + T E I R+ RTG
Sbjct: 368 ARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG------ 421
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
+G + E+GY + R+K MI G ++
Sbjct: 422 ---------------------DLGR----------MDEEGYFFITDRLKRMINASGFKVW 450
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSI 187
P E+E + HP + EA PD R GE V + L+ A+ E++ I
Sbjct: 451 PAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEII 501
Score = 62.7 bits (153), Expect = 2e-10
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+GY + R+K MI G ++P E+E + HP + EA PD R GE V + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487
Query: 464 KENA--KLNADDIRTFCKG 480
+ A K ++I + +
Sbjct: 488 RPEARGKTTEEEIIAWARE 506
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 71.2 bits (174), Expect = 4e-13
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
G L I+ NMLGYW + ++T E + D W+ TG
Sbjct: 375 GTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTG-------------------------- 407
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
D REDG+ + GR +MII GG NI P E++ + V EA Y
Sbjct: 408 -----------DLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACY 456
Query: 157 GVPDERMGEEVGISI 171
+PDE G VG+++
Sbjct: 457 EIPDEEFGALVGLAV 471
Score = 56.9 bits (137), Expect = 1e-08
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 403 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
REDG+ + GR +MII GG NI P E++ + V EA Y +PDE G VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 71.2 bits (174), Expect = 4e-13
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 38/162 (23%)
Query: 18 SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
+ + K +D R +P TPGEL +R C M GY+ ++++T TI D WL TG
Sbjct: 369 NLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTG------ 422
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
IG+ + +DG +V RIK++I G +
Sbjct: 423 ---------------------DIGY----------IDDDGDIFIVDRIKELIKYKGFQVA 451
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
P E+E + THP+V +A +PDE GE + + AK
Sbjct: 452 PAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK 493
Score = 49.6 bits (118), Expect = 3e-06
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
Y +EE D G + D + +DG +V RIK++I G + P E+E + T
Sbjct: 403 YNNKEETDRTIDEDGW-LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 461
Query: 437 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
HP+V +A +PDE GE + + AK + +DI F V+ +
Sbjct: 462 HPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHY 510
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 70.6 bits (173), Expect = 5e-13
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 44/162 (27%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
++A++VD VP G G L +RG C L D+++ +E + D W TG
Sbjct: 322 YEARIVDDQGNEVPRGEAGRLAVRGPTGCRYL----DDERQQEYVR-DGWNVTG------ 370
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
D F EDGY V R DMI+ G NI
Sbjct: 371 -------------------------------DIFRQDEDGYFHYVARSDDMIVSAGYNIA 399
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
E+E+ + THP+V E GVPDE G+ V I L++ K
Sbjct: 400 APEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTK 441
Score = 61.7 bits (150), Expect = 3e-10
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 365 MDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGEN 424
+D E + ++Y+R+ N+T D F EDGY V R DMI+ G N
Sbjct: 353 LDDERQ----QEYVRDGWNVT-----------GDIFRQDEDGYFHYVARSDDMIVSAGYN 397
Query: 425 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCK 479
I E+E+ + THP+V E GVPDE G+ V I L++ K L A+ ++ F K
Sbjct: 398 IAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVK 455
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 70.3 bits (173), Expect = 6e-13
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+EV +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
+L+E A+ + ++R C+ ++ +
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGY 501
Score = 66.4 bits (163), Expect = 1e-11
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 43/167 (25%)
Query: 22 KVVDHNNRIVPFGT--PGELLIRGHCNMLGYWEDEQKTKET---IGPDRWLRTGRYKKTS 76
V+D + V G+ G + RGH LGY++D +KT ET I R+
Sbjct: 361 VVLDEDGNPVEPGSGEIGWIARRGHIP-LGYYKDPEKTAETFPTIDGVRY---------- 409
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
++ D+ + DG ++GR I GGE ++
Sbjct: 410 ---------------------------AIPGDRARVEADGTITLLGRGSVCINTGGEKVF 442
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
P+E+EE ++ HP+V +A GVPDER G+EV ++L+E A+ + E
Sbjct: 443 PEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAE 489
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 69.3 bits (170), Expect = 1e-12
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 39/163 (23%)
Query: 22 KVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
K+ D ++P G GE+++R + GYW + T E + D WL TG
Sbjct: 399 KICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG---------- 447
Query: 81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
IG + E G+ +GR K+M+ G +++P E+
Sbjct: 448 -----------------DIG----------KIDEQGFLHYLGRRKEMLKVNGMSVFPSEV 480
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
E + HP VL + G PD G+ ++LK A L A
Sbjct: 481 EALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAA 523
Score = 55.8 bits (135), Expect = 3e-08
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E G+ +GR K+M+ G +++P E+E + HP VL + G PD G+ ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513
Query: 464 KENAKLNADDIRTFCK 479
K A L A ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 69.1 bits (169), Expect = 2e-12
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 38/153 (24%)
Query: 14 LSSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRY 72
L + + QAKVVD ++P G GEL I+G M GY + + T+ TI D WLRTG
Sbjct: 378 LLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG-- 435
Query: 73 KKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGG 132
I +F EDGY +V R+K++I G
Sbjct: 436 -------------------------DIAYF----------DEDGYLYIVDRLKEIIKYKG 460
Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
I P ++E + +HP +++A VPD+ GE
Sbjct: 461 FQIAPADLEAVLISHPEIIDAAVTAVPDKECGE 493
Score = 47.9 bits (114), Expect = 8e-06
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 462
EDGY +V R+K++I G I P ++E + +HP +++A VPD+ GE V ++
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVR 501
Query: 463 LKENAKLNADDIRTFCKGKVSKF 485
++ + L+ + + + +V+ +
Sbjct: 502 -RQGSTLSQEAVINYVAKQVAPY 523
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 68.7 bits (168), Expect = 2e-12
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V DGY ++ R KD+II GGENI E+E + THP VLEA PDER GE
Sbjct: 436 DLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESP 495
Query: 458 GISIKLKENAKLN-----ADDIRTFCKGKV 482
+ LK + A+DI FC+ ++
Sbjct: 496 CAFVTLKPGVDKSDEAALAEDIMKFCRERL 525
Score = 66.0 bits (161), Expect = 2e-11
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 35 TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94
T GE+++RG+ M GY ++ + +E
Sbjct: 401 TMGEIVMRGNMVMKGYLKNPKANEEAF--------------------------------- 427
Query: 95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
G+F+S D V DGY ++ R KD+II GGENI E+E + THP VLEA
Sbjct: 428 ---ANGWFHS--GDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEAS 482
Query: 155 AYGVPDERMGEEVGISIKLKENA 177
PDER GE + LK
Sbjct: 483 VVARPDERWGESPCAFVTLKPGV 505
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 67.8 bits (165), Expect = 5e-12
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 38/162 (23%)
Query: 30 IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLK 89
+P G GE++++G M GYW ++T + D WL TG
Sbjct: 397 ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTG------------------- 436
Query: 90 PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN 149
+G+ + EDG+ V R KDMI+ G N+YP+E+EE + H
Sbjct: 437 --------DVGY----------MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEK 478
Query: 150 VLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDY 191
V E GVPD GE V + LKE + + E + Y
Sbjct: 479 VQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKY 520
Score = 62.0 bits (150), Expect = 3e-10
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
+ EDG+ V R KDMI+ G N+YP+E+EE + H V E GVPD GE V +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
LKE + + +++ F + ++ +
Sbjct: 501 VLKEGTECSEEELNQFARKYLAAY 524
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 67.5 bits (164), Expect = 5e-12
Identities = 33/157 (21%), Positives = 51/157 (32%), Gaps = 19/157 (12%)
Query: 335 ALKGLYHFKKWMN---------PKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENIT 385
A GL + PK +V L P Y EE
Sbjct: 332 AKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG---------YYGNEEATR 382
Query: 386 VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 445
+ D V E+GY ++ R+KD+I GGE I ++E + HP V EA
Sbjct: 383 SALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 442
Query: 446 YGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482
+P + E + + K +++
Sbjct: 443 VAIPHPKWQERPLAVVVPRG-EKPTPEELNEHLLKAG 478
Score = 57.1 bits (137), Expect = 1e-08
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
GFF + D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P
Sbjct: 389 GFFRT--GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP 446
Query: 160 DERMGEEVGISIKLKE 175
+ E + +
Sbjct: 447 HPKWQERPLAVVVPRG 462
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 67.1 bits (164), Expect = 6e-12
Identities = 49/158 (31%), Positives = 63/158 (39%), Gaps = 42/158 (26%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNML----GYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
V+D + + + G PG+L I + L GYW+D +KT E I RW TG
Sbjct: 272 VLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTG-------- 322
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D EDGY +GR D+II G I P
Sbjct: 323 -----------------------------DLVERDEDGYFWFIGRADDVIISAGYRIGPF 353
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
++E + HP V EA GVPD GE V + LKE
Sbjct: 354 DVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEG 391
Score = 58.2 bits (141), Expect = 4e-09
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 374 YKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 433
+ Y + E T AGR D EDGY +GR D+II G I P ++E
Sbjct: 300 FSGYWDDPEK-TAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESA 358
Query: 434 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSK 484
+ HP V EA GVPD GE V + LKE + A++++ F K ++S
Sbjct: 359 LLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSA 412
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 66.2 bits (162), Expect = 1e-11
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 42/148 (28%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
++ + +P G + +RG M GY+ DE+ + D WL TG
Sbjct: 397 EIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTG----------- 444
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
+G+ DGY + GR KD+II G NI+P++IE
Sbjct: 445 ----------------DLGY-----------LLDGYLYITGRAKDLIIINGRNIWPQDIE 477
Query: 142 EFIQTHPNVL--EAYAYGVPDERMGEEV 167
+ P + +A A+ + E GE++
Sbjct: 478 WIAEQEPELRSGDAAAFSIAQEN-GEKI 504
Score = 52.3 bits (126), Expect = 3e-07
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 457
DGY + GR KD+II G NI+P++IE + P + +A A+ + E GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 63.9 bits (155), Expect = 6e-11
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 67 LRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGF-FYSLVSDQFVLREDGYGQVVGRIK 125
L GR F + R P + Q F++ V D + EDGY + R
Sbjct: 343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKS 402
Query: 126 DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
MII GG NIYP+E E + HP V + GVPD MGE+V I+L E
Sbjct: 403 FMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVE 452
Score = 59.6 bits (144), Expect = 1e-09
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY + R MII GG NIYP+E E + HP V + GVPD MGE+V I+L
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450
Query: 464 KE 465
E
Sbjct: 451 VE 452
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 63.8 bits (156), Expect = 8e-11
Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 44/152 (28%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
++VD + ++P G G L +RG GY+ + + E D W RTG
Sbjct: 383 VAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTG-------- 434
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVV--GRIKDMIIRGGENIY 136
+GF L + G++ GR KDMII G N Y
Sbjct: 435 -------------------DLGF----------LHD---GRLTITGREKDMIIINGVNYY 462
Query: 137 PKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 166
EIE ++ P V ++ A V D G +
Sbjct: 463 NHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 408 GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 456
G++ GR KDMII G N Y EIE ++ P V ++ A V D G +
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 61.9 bits (151), Expect = 2e-10
Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 47/143 (32%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD--------RWLRTGR 71
+ V+D + R VP G GEL I G GY + T E PD R RTG
Sbjct: 303 RLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG- 361
Query: 72 YKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IR 130
D DG + +GRI D + IR
Sbjct: 362 ------------------------------------DLVRYLPDGNLEFLGRIDDQVKIR 385
Query: 131 GGENIYPKEIEEFIQTHPNVLEA 153
G I EIE + HP V EA
Sbjct: 386 -GYRIELGEIEAALLRHPGVREA 407
Score = 28.8 bits (65), Expect = 7.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 398 DQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA 443
D DG + +GRI D + IRG I EIE + HP V EA
Sbjct: 362 DLVRYLPDGNLEFLGRIDDQVKIRG-YRIELGEIEAALLRHPGVREA 407
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 61.8 bits (150), Expect = 4e-10
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 40/144 (27%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKET-IGPDRWLRTGRYKKTSF 77
++ ++V + V G PGELLI G + YW + KT++T G W R+G
Sbjct: 339 YRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE--WTRSG------- 389
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D++V +DG GR DM+ G + P
Sbjct: 390 ------------------------------DKYVRNDDGSYTYAGRTDDMLKVSGIYVSP 419
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDE 161
EIE + HP VLEA GV DE
Sbjct: 420 FEIESALIQHPAVLEAAVVGVEDE 443
Score = 44.4 bits (105), Expect = 9e-05
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 451
D++V +DG GR DM+ G + P EIE + HP VLEA GV DE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 61.0 bits (149), Expect = 6e-10
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 38/126 (30%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+ IRG GY+++ +KT E D W TG
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTG-------------------------- 384
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYA 155
IG + DG +++ R K++ + GE + +++E ++ P V +
Sbjct: 385 -DIGEW----------LPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICV 433
Query: 156 YGVPDE 161
YG +
Sbjct: 434 YGDSLK 439
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 60.0 bits (146), Expect = 1e-09
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
L GY ++GR II GGEN+YP E+E I V + G+PD GE V +I
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV-TAI 392
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
+ ++ ++ ++++T K ++S F
Sbjct: 393 YVPKDPSISLEELKTAIKDQLSPF 416
Score = 57.3 bits (139), Expect = 9e-09
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
L GY ++GR II GGEN+YP E+E I V + G+PD GE V
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV 389
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 59.9 bits (146), Expect = 1e-09
Identities = 40/151 (26%), Positives = 49/151 (32%), Gaps = 49/151 (32%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKET--IGPD--RWLRTGRYKKT 75
+ V+D + R P PGEL I G LGYW D + T E R RTG
Sbjct: 310 KFYVLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTG----- 364
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGR----IKDMIIRG 131
D R DG + +GR +K IR
Sbjct: 365 --------------------------------DLGRYRPDGTIEFLGRADHQVK---IR- 388
Query: 132 GENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
G + EIE + HP V A V D
Sbjct: 389 GYRVELGEIEAALARHPGVQRAVVVVVGDGG 419
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 59.7 bits (145), Expect = 2e-09
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 38/111 (34%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+ I G +GY E+KT+E I D WL +G
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSG-------------------------- 424
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 146
+GF L +DG+ + GRIK++II GGEN+ P IEE ++
Sbjct: 425 -DLGF----------LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464
Score = 37.8 bits (88), Expect = 0.013
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 402 LREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 436
L +DG+ + GRIK++II GGEN+ P IEE ++
Sbjct: 429 LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 58.8 bits (143), Expect = 2e-09
Identities = 43/151 (28%), Positives = 57/151 (37%), Gaps = 40/151 (26%)
Query: 20 QAKVVDHNNRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+ ++VD + VP T GEL +RG GY T D W RTG
Sbjct: 303 ETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG------- 355
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIK-DMIIRGGENIY 136
D V+ DG ++VGR D+I GG I
Sbjct: 356 ------------------------------DVAVVDPDGMHRIVGRESTDLIKSGGYRIG 385
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EIE + HP V EA GVPD+ +G+ +
Sbjct: 386 AGEIETALLGHPGVREAAVVGVPDDDLGQRI 416
Score = 49.6 bits (119), Expect = 2e-06
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 398 DQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V+ DG ++VGR D+I GG I EIE + HP V EA GVPD+ +G+
Sbjct: 356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415
Query: 457 V 457
+
Sbjct: 416 I 416
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 58.8 bits (143), Expect = 3e-09
Identities = 42/164 (25%), Positives = 57/164 (34%), Gaps = 44/164 (26%)
Query: 21 AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE---TIGPDRWLRTGRYKKTSF 77
A ++D + R VP G GEL+I G GY + +KT + RW RTG
Sbjct: 283 ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG------- 335
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D L +DG +GR I G I
Sbjct: 336 ------------------------------DLVYLEDDGLLVYLGRKDFQIKLHGYRIEL 365
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS--IKLKENAKL 179
+EIE ++ P V EA VP + V + + KE A
Sbjct: 366 EEIEAALRALPGVEEAVVLPVPKG--EKVVRLVAFVVGKEGALD 407
Score = 30.6 bits (70), Expect = 1.8
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 403 REDGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
+ G +V GR I G I +EIE ++ P V EA VP + V +
Sbjct: 339 YLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKG--EKVVRLV 396
Query: 461 --IKLKENAKLNADDIRTFCKGKV 482
+ KE A L+ ++ K ++
Sbjct: 397 AFVVGKEGA-LDTKALKKELKKRL 419
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 58.6 bits (142), Expect = 3e-09
Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 26/134 (19%)
Query: 34 GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93
G GEL+ RG +GYW D +KT E R L P
Sbjct: 354 GEEGELVHRGALVAMGYWNDPEKTAE------------------------RFRPLPP--F 387
Query: 94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 153
+ + D E+G+ VGR +MI G + P E+EE V EA
Sbjct: 388 PGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEA 447
Query: 154 YAYGVPDERMGEEV 167
A+GVPD +G+ +
Sbjct: 448 VAFGVPDPTLGQAI 461
Score = 50.6 bits (121), Expect = 1e-06
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+G+ VGR +MI G + P E+EE V EA A+GVPD +G+ + + +
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+L+ + C+ ++ +
Sbjct: 468 PGGEELDRAALLAECRARLPNY 489
Score = 32.1 bits (73), Expect = 0.83
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRG 421
YL EE PDS G++I + VLREDG G +++ RG
Sbjct: 319 YLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRG 363
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 57.7 bits (140), Expect = 5e-09
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 449
+ IF KD E G +GR+ D+I G N+YP E+E+ + P V EA Y
Sbjct: 289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGK 348
Query: 450 DERMGEEVGISIKLKENAKLNAD--DIRTFC 478
D GE V K K + D +R +C
Sbjct: 349 DPVAGERV----KAKVISHEEIDPVQLREWC 375
Score = 51.6 bits (124), Expect = 4e-07
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
E G +GR+ D+I G N+YP E+E+ + P V EA Y D GE V
Sbjct: 303 ERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV 356
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 57.8 bits (140), Expect = 7e-09
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 390 AGRSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE 442
I + D F + GY ++ R KD+I GGE I ++E HP V E
Sbjct: 401 VDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAE 460
Query: 443 AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
A GV + E + ++LK ++I + GK++K+
Sbjct: 461 AAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKW 503
Score = 46.7 bits (111), Expect = 2e-05
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
GFF + D + GY ++ R KD+I GGE I ++E HP V EA GV
Sbjct: 410 GFFDT--GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVY 467
Query: 160 DERMGEEVGISIKLKE 175
+ E + ++LK
Sbjct: 468 HPKWDERPLLIVQLKP 483
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 57.7 bits (140), Expect = 8e-09
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 38/115 (33%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+LIR M GY++D +KT E D WL TG
Sbjct: 343 GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTG-------------------------- 376
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNV 150
D+ + EDG+ ++ GR+K++ G+ + P IE + +P+V
Sbjct: 377 -----------DKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHV 420
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 56.7 bits (137), Expect = 1e-08
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 43/157 (27%)
Query: 16 SSSFQAKVVDHNNRIVPFGTPGELLI-----RGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
S + +++D N ++P GT G++ I R C Y ++ +KT TI D ++ TG
Sbjct: 349 SPPYDVQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TG 407
Query: 71 RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR 130
D+ ++ EDGY VGR D+I
Sbjct: 408 -------------------------------------DRGIMDEDGYFWFVGRADDVINS 430
Query: 131 GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
G I P E+E + HP V+E+ PD GE V
Sbjct: 431 SGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467
Score = 48.6 bits (116), Expect = 4e-06
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D+ ++ EDGY VGR D+I G I P E+E + HP V+E+ PD GE V
Sbjct: 408 DRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 56.5 bits (137), Expect = 1e-08
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 20 QAKVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
+ K+VD +P PGE+ IRG M GY D + T TI D WL TG
Sbjct: 366 ELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG-------- 417
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
IG+ + +D +V R+K++I G + P
Sbjct: 418 -------------------DIGY----------IDDDDELFIVDRLKELIKYKGFQVAPA 448
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGE 165
E+E + +HP++ +A + DE GE
Sbjct: 449 ELEALLISHPSIADAAVVPMKDEVAGE 475
Score = 34.2 bits (79), Expect = 0.18
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 468
+V R+K++I G + P E+E + +HP++ +A + DE GE V ++ ++
Sbjct: 430 IVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR-SNGSE 488
Query: 469 LNADDIRTFCKGKVSK 484
+ D+I+ F V+K
Sbjct: 489 ITEDEIKQF----VAK 500
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 56.0 bits (136), Expect = 2e-08
Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 47/151 (31%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-------RWLRTGRYKKT 75
V+D + + VP G PGEL I G GY + T E PD R RTG
Sbjct: 271 VLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTG----- 325
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGEN 134
D R DG + +GR D + IR G
Sbjct: 326 --------------------------------DLVRWRPDGRLEYLGRADDQVKIR-GFR 352
Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
I EIE ++ HP V +A V +E G+
Sbjct: 353 IELGEIEAALRAHPGVADAVVV-VREEGPGD 382
Score = 32.2 bits (74), Expect = 0.61
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 369 ARIYHYKKYLREEENITVP--DSAGRSIFEKDQFVLREDGYGQVVGRIKDMI-IRGGENI 425
AR Y + L E + P D GR D R DG + +GR D + IRG I
Sbjct: 295 ARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRG-FRI 353
Query: 426 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEE--VGISIKLKENAKLNADDIRTF 477
EIE ++ HP V +A V +E G++ V + K A +A+ +R
Sbjct: 354 ELGEIEAALRAHPGVADAVVV-VREEGPGDQRLVAYVV-PKAGAAPDAEALRAA 405
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 55.6 bits (135), Expect = 2e-08
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE-VGISIKLKENAK 468
++GR+ ++ GGE I P+EIE I HP V + + V D G+ V + ++ +++
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAV---VESDSE 405
Query: 469 LNADDIRTFCKGKVSKF 485
++ + + K+++F
Sbjct: 406 AAVVNLAEWLQDKLARF 422
Score = 54.1 bits (131), Expect = 9e-08
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 39/128 (30%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+ +RG LGYW +L PL +
Sbjct: 305 GEIWLRGASLALGYWRQ--------------------------------GQLVPLVNDE- 331
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
G+F + D+ + +G ++GR+ ++ GGE I P+EIE I HP V + +
Sbjct: 332 ---GWFAT--RDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVV 385
Query: 157 GVPDERMG 164
V D G
Sbjct: 386 PVADAEFG 393
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 55.9 bits (135), Expect = 2e-08
Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 43/166 (25%)
Query: 16 SSSFQAKVVDHNNRIVPFGTPGELLIR---GHCNML--GYWEDEQKTKETIGPDRWLRTG 70
S + ++D + + G GE++IR G L GY+ D ++T E W
Sbjct: 359 SPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEV-----W---- 409
Query: 71 RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR 130
G++++ D + EDGY VGR D+I
Sbjct: 410 ---------------------------HDGYYHT--GDTAWMDEDGYLWFVGRADDLIKS 440
Query: 131 GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
G I P E+E + HP VLE GVPD G+ V +I L +
Sbjct: 441 SGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKG 486
Score = 52.8 bits (127), Expect = 2e-07
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY VGR D+I G I P E+E + HP VLE GVPD G+ V +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483
Query: 464 KEN 466
+
Sbjct: 484 TKG 486
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 55.3 bits (134), Expect = 4e-08
Identities = 38/159 (23%), Positives = 49/159 (30%), Gaps = 45/159 (28%)
Query: 31 VPFGTPGELL--IRGHCNMLGYWEDEQKTKETIGP-----DRWLRTGRYKKTSFLYSAMA 83
VP G G LL I GY +DE K+ + D + TG
Sbjct: 277 VPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTG------------- 323
Query: 84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 143
D GY V R+ D GEN+ E+EE
Sbjct: 324 ------------------------DLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEV 359
Query: 144 IQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKLNA 181
+ HP V EA YGV G ++ L A +
Sbjct: 360 LAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDP 398
Score = 51.5 bits (124), Expect = 5e-07
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEE 456
D GY V R+ D GEN+ E+EE + HP V EA YGV G
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRA 383
Query: 457 VGISIKLKENAKLNAD 472
++ L A +
Sbjct: 384 GMAALTLAPGAAFDPQ 399
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 55.1 bits (133), Expect = 4e-08
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 44/162 (27%)
Query: 20 QAKVVDHN----NRIVPFGTPGELLIR-GHCNML-GYWEDEQKTKETIGPDRWLRTGRYK 73
+A V++ + + G GEL ++ G +M GY +E++ + D W TG
Sbjct: 270 EAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG--- 325
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
D EDGY VGR D+I G
Sbjct: 326 ----------------------------------DLAYRDEDGYFWFVGRADDVIKTAGH 351
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
+ P E+E + HP V EA G PD GE V + L+
Sbjct: 352 LVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRP 393
Score = 52.0 bits (125), Expect = 4e-07
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY VGR D+I G + P E+E + HP V EA G PD GE V + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391
Query: 464 KENAKLNAD---DIRTFCKGKVS 483
+ + + + ++ TF + ++
Sbjct: 392 RPGFEPSEELRRELLTFARQRLG 414
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 55.3 bits (134), Expect = 5e-08
Identities = 37/155 (23%), Positives = 51/155 (32%), Gaps = 49/155 (31%)
Query: 22 KVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKE---TIGPDRWLRTGRYKKTSF 77
++VD +P G G +LI G M GY D +KT E I W TG
Sbjct: 972 RIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTG------- 1024
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D+ L EDG+ + R GGE +
Sbjct: 1025 ------------------------------DKGHLDEDGFLTITDRYSRFAKIGGEMVPL 1054
Query: 138 KEIEEFIQTHPNVLEA-----YAYGVPDERMGEEV 167
+EE + L VPDE+ GE++
Sbjct: 1055 GAVEEELAK---ALGGEEVVFAVTAVPDEKKGEKL 1086
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 54.7 bits (132), Expect = 6e-08
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
DGY GR+ D + GEN+ IE + +P+ E Y VPD +G++V ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452
Query: 464 KENAKLNADDIRTF 477
AK + D F
Sbjct: 453 APGAKFDPDAFAEF 466
Score = 52.0 bits (125), Expect = 4e-07
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
DGY GR+ D + GEN+ IE + +P+ E Y VPD +G++V ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452
Query: 174 KENAKLNA 181
AK +
Sbjct: 453 APGAKFDP 460
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 54.6 bits (131), Expect = 7e-08
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 38/131 (29%)
Query: 35 TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94
T GE++I+G M GY ++ + T E WL TG
Sbjct: 391 TMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTG------------------------ 425
Query: 95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
D V+ DG+ ++ R KD+II GGENI E+E + +P VLE
Sbjct: 426 -------------DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472
Query: 155 AYGVPDERMGE 165
+P GE
Sbjct: 473 VVAMPHPTWGE 483
Score = 52.3 bits (125), Expect = 4e-07
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V+ DG+ ++ R KD+II GGENI E+E + +P VLE +P GE
Sbjct: 426 DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETP 485
Query: 458 GISIKLKENAKLNADDIRTF 477
+ L++ D +
Sbjct: 486 CAFVVLEKGETTKEDRVDKL 505
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 53.6 bits (130), Expect = 1e-07
Identities = 44/161 (27%), Positives = 54/161 (33%), Gaps = 54/161 (33%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG-RYKKTSFL 78
+ V+D + R VP G PGEL I G GY + T E PD + G R +T
Sbjct: 275 RVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRT--- 331
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIY- 136
G D DG + +GR D + IRG Y
Sbjct: 332 ---------------------G-------DLARWLPDGNLEFLGRADDQVKIRG----YR 359
Query: 137 --PKEIEEFIQTHPNVLEA--------------YAYGVPDE 161
EIE + HP V EA AY VP
Sbjct: 360 IELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAA 400
Score = 32.4 bits (75), Expect = 0.50
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 36/97 (37%)
Query: 403 REDGYGQVVGRIKDMI-IRGGENIY---PKEIEEFIQTHPNVLEA--------------Y 444
DG + +GR D + IRG Y EIE + HP V EA
Sbjct: 338 LPDGNLEFLGRADDQVKIRG----YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLV 393
Query: 445 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 481
AY VP A+L+A ++R F +
Sbjct: 394 AYVVPA--------------AGAELDAAELRAFLAER 416
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 53.1 bits (128), Expect = 1e-07
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 115 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
DG V+GR D I GG + P+ +E + THP V + +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298
Score = 53.1 bits (128), Expect = 1e-07
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
DG V+GR D I GG + P+ +E + THP V + +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 53.0 bits (128), Expect = 2e-07
Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 56/170 (32%)
Query: 22 KVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIG----------PDR-WLRT 69
++VD + I P GT GE+ + G GYW+ ++T+ T G P+ WLRT
Sbjct: 382 RIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRT 441
Query: 70 GRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII 129
G +GF +G +VGRIKD++I
Sbjct: 442 G---------------------------DLGFIS-----------EGELFIVGRIKDLLI 463
Query: 130 RGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
G N YP +IE IQ T V A VPD+ + V I I+LK+
Sbjct: 464 VDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509
Score = 44.9 bits (107), Expect = 8e-05
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 467
+VGRIKD++I G N YP +IE IQ T V A VPD+ + V I I+LK+
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509
Query: 468 KLNADDIRTFC 478
+ + +
Sbjct: 510 DSDEEAMDRLR 520
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 53.1 bits (128), Expect = 2e-07
Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 42/168 (25%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHC---NMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
+ +V+D + G G ++I+ +L W D+ R+KK
Sbjct: 410 YDVQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDD---------------ERFKKL 454
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFF--YSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
F Y D EDGY V+GR D+I G
Sbjct: 455 YL----------------------NKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGH 492
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
+ E+EE + HP+V E GV DE G+ + LK++ K++A
Sbjct: 493 RLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDA 540
Score = 52.3 bits (126), Expect = 4e-07
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY V+GR D+I G + E+EE + HP+V E GV DE G+ + L
Sbjct: 473 EDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVL 532
Query: 464 KENAKLNADDIRT 476
K++ K++AD +
Sbjct: 533 KDDCKIDADQLEN 545
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 53.0 bits (128), Expect = 2e-07
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 40/158 (25%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIR-GHCNML-GYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+A +VD +P G L I+ G +M+ G W + +K + D W +G
Sbjct: 386 EAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGD-WYVSGD------ 438
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
SA + EDGY GR+ D+I GE + P
Sbjct: 439 --SAY-----------------------------MDEDGYFWFQGRVDDVIKTSGERVGP 467
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
E+E + HP V EA G PD GE + + L+
Sbjct: 468 FEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRP 505
Score = 51.4 bits (124), Expect = 6e-07
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 361 WPNSM-----DSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIK 415
WP SM ++ + Y+ Y + ++ DSA EDGY GR+
Sbjct: 411 WP-SMMRGIWNNPEK---YESYFAGDWYVS-GDSAYMD----------EDGYFWFQGRVD 455
Query: 416 DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 465
D+I GE + P E+E + HP V EA G PD GE + + L+
Sbjct: 456 DVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRP 505
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 52.7 bits (127), Expect = 3e-07
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 42/125 (33%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ +VVD + +++P G + +RG GY D WL TG
Sbjct: 370 EVRVVDEDGQVLPPRGVGVIELRGESVTPGY-LTMDGFIPAQDADGWLDTG--------- 419
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVV--GRIKDMIIRGGENIYP 137
+G+ G+VV GR+KD+II G NIYP
Sbjct: 420 ------------------DLGYL------------TEEGEVVVCGRVKDVIIMAGRNIYP 449
Query: 138 KEIEE 142
+IE
Sbjct: 450 TDIER 454
Score = 48.8 bits (117), Expect = 5e-06
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Query: 406 GY----GQVV--GRIKDMIIRGGENIYPKEIEE 432
GY G+VV GR+KD+II G NIYP +IE
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 52.1 bits (125), Expect = 4e-07
Identities = 32/147 (21%), Positives = 48/147 (32%), Gaps = 38/147 (25%)
Query: 13 TLSSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGR 71
+S + + D + ++P G GE+ IR M GY ++ T + D + RTG
Sbjct: 353 RPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG- 411
Query: 72 YKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRG 131
D R DG R+ D + G
Sbjct: 412 ------------------------------------DLGYTRGDGQFVYQTRMGDSLRLG 435
Query: 132 GENIYPKEIEEFIQTHPNVLEAYAYGV 158
G + P EIE ++ P V A G
Sbjct: 436 GFLVNPAEIEHALEALPGVAAAQVVGA 462
Score = 37.0 bits (86), Expect = 0.022
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 387 PDSAGRSIFEKDQF------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 440
PD+ R++ + F R DG R+ D + GG + P EIE ++ P V
Sbjct: 395 PDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGV 454
Query: 441 LEAYAYGVPDERMGEEVGIS-IKLKENAKLNADDIRTFCKGKVSKF 485
A G R G+ V ++ + + A + + C+ ++ F
Sbjct: 455 AAAQVVGA--TRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGF 498
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 51.4 bits (124), Expect = 6e-07
Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 47/162 (29%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
++D + VP G PGEL + G LGY + T E PD + R +T
Sbjct: 307 TVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRT---- 362
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPK 138
G D R DG + +GRI + IR G I
Sbjct: 363 --------------------G-------DLARWRPDGNIEFLGRIDRQVKIR-GFRIELG 394
Query: 139 EIEEFIQTHPNVLEAY--------------AYGVPDERMGEE 166
EIE+ + HP V EA AY V +
Sbjct: 395 EIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAA 436
Score = 34.1 bits (79), Expect = 0.17
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 402 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
R DG + +GRI + IRG I EIE+ + HP V EA + E + +
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRG-FRIELGEIEQALLQHPGVREAAV--LVREDAAGDKRLV 424
Query: 461 IKLKENAKLNADDIRTFCK 479
+ L+A ++R
Sbjct: 425 AYVVARGALDAAELRAHLA 443
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 51.6 bits (124), Expect = 7e-07
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
DG+ GR D + GEN+ IE + HP + Y VPDER+G++V ++ L
Sbjct: 392 ADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451
Query: 464 KENAKLNADDIRTF 477
++ A + D F
Sbjct: 452 RDGATFDPDAFAAF 465
Score = 48.9 bits (117), Expect = 4e-06
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
G ++S D DG+ GR D + GEN+ IE + HP + Y VP
Sbjct: 380 GMYWS--GDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVP 437
Query: 160 DERMGEEVGISIKLKENAKL 179
DER+G++V ++ L++ A
Sbjct: 438 DERVGDQVMAALVLRDGATF 457
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 51.2 bits (123), Expect = 8e-07
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
DG+ Q+ R KD+I GGE I +IE HP V EA + E + + +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481
Query: 465 ENAKLNADDIRTFCKGKVSK 484
A++ +++ F +GKV+K
Sbjct: 482 PGAEVTREELLAFYEGKVAK 501
Score = 43.2 bits (102), Expect = 2e-04
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 115 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP----DER 162
DG+ Q+ R KD+I GGE I +IE HP V EA DER
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDER 473
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 50.7 bits (122), Expect = 9e-07
Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 48/163 (29%)
Query: 21 AKVVDHNNRIVPFGTPGELLIR----GHCNM-LGYWEDEQKTKETIGPDRWLRT--GRYK 73
A VVD + R V G GEL++R G M G+W D P+R+L T R+
Sbjct: 288 ADVVDEDGRPVR-GEVGELVVRAPWPG---MTRGFWRD---------PERYLETYWSRFP 334
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
G + D ++ EDGY ++GR D I G+
Sbjct: 335 --------------------------GVWVH--GDWALVDEDGYWYILGRSDDTIKVAGK 366
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
+ P EIE + +HP V EA A GVPD GE + + LK
Sbjct: 367 RVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPG 409
Score = 50.7 bits (122), Expect = 1e-06
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY ++GR D I G+ + P EIE + +HP V EA A GVPD GE + + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406
Query: 464 KENAKLNADDIRT 476
K +A
Sbjct: 407 KPGVTPSAALEAE 419
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 49.6 bits (119), Expect = 2e-06
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 35/137 (25%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG--RYKKTSF 77
QA V+D + + VP G PGEL I G GY + T E P+ + + R +T
Sbjct: 278 QAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGD 337
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIY 136
L +RR R DG + +GRI D + +R G I
Sbjct: 338 L-----VRR--------------------------RADGQLEYLGRIDDQVKVR-GFRIE 365
Query: 137 PKEIEEFIQTHPNVLEA 153
EIE +++ P V EA
Sbjct: 366 LGEIEAALRSIPGVAEA 382
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 48.6 bits (116), Expect = 5e-06
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
DG+ + R +D+I GGE IY ++E +I P V+E G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493
Score = 48.6 bits (116), Expect = 5e-06
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 455
DG+ + R +D+I GGE IY ++E +I P V+E G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 48.8 bits (116), Expect = 5e-06
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
Q ++D R +P G PGEL I G LGY T E R RTG
Sbjct: 550 TQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG 601
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 48.4 bits (115), Expect = 7e-06
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY ++GR D+I G + +EIEE + +HP+V E GV DE G+ + L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543
Query: 464 KENAKLNADDIR 475
KE+
Sbjct: 544 KESDSAGDAHDP 555
Score = 47.6 bits (113), Expect = 1e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
EDGY ++GR D+I G + +EIEE + +HP+V E GV DE G+ + L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543
Query: 174 KENAKL 179
KE+
Sbjct: 544 KESDSA 549
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 48.0 bits (115), Expect = 8e-06
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
+DGY + GR+ D+I G + EIE + +HP V EA G+PD+ G+ + + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546
Query: 464 KENAKLNAD 472
K+ + + +
Sbjct: 547 KDGYEPDDE 555
Score = 47.2 bits (113), Expect = 2e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
+DGY + GR+ D+I G + EIE + +HP V EA G+PD+ G+ + + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546
Query: 174 KENA 177
K+
Sbjct: 547 KDGY 550
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 48.0 bits (115), Expect = 8e-06
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
YS D + DGY ++GR D+I G + +EIEE I +HP V E GV D
Sbjct: 475 YS-TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDAL 533
Query: 163 MGE 165
G+
Sbjct: 534 KGQ 536
Score = 47.6 bits (114), Expect = 1e-05
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 455
DGY ++GR D+I G + +EIEE I +HP V E GV D G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 46.3 bits (110), Expect = 2e-05
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 43/105 (40%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+ IRG M GY I PD W TG
Sbjct: 373 GEIEIRGASMMSGYLGQA-----PIDPDDWFPTG-------------------------- 401
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
+G+ LV V V GR K++I G NI+P EIE
Sbjct: 402 -DLGY---LVDGGLV--------VCGRAKELITVAGRNIFPTEIE 434
Score = 35.1 bits (81), Expect = 0.080
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 410 VVGRIKDMIIRGGENIYPKEIE 431
V GR K++I G NI+P EIE
Sbjct: 413 VCGRAKELITVAGRNIFPTEIE 434
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 46.3 bits (110), Expect = 3e-05
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 47/141 (33%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93
GE+ G GYW + + + +T WLRTG
Sbjct: 398 GEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTG----------------------- 434
Query: 94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL-- 151
+GF DG V GR+KDM+I G N+YP++IE+ ++ V+
Sbjct: 435 ----DLGF-----------LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRK 479
Query: 152 -EAYAYGVPDERMGEEVGISI 171
A+ V + GEE GI I
Sbjct: 480 GRVAAFAVNHQ--GEE-GIGI 497
Score = 42.5 bits (100), Expect = 6e-04
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAY 446
GR+ DG V GR+KDM+I G N+YP++IE+ ++ V+ A+
Sbjct: 426 DGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAF 485
Query: 447 GVPDERMGEEVGISI 461
V + GEE GI I
Sbjct: 486 AVNHQ--GEE-GIGI 497
Score = 34.8 bits (80), Expect = 0.12
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 369 ARIYHYKKYLREEENITVPDSA--GRSIFEKDQFVLREDGYGQVVGRIKDMI-IRGGENI 425
A+ YH + L E + P +A GR D LR DG + VGRI + IRG I
Sbjct: 2543 AQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFR-I 2601
Query: 426 YPKEIEEFIQTHPNVLEA 443
EIE + HP V EA
Sbjct: 2602 ELGEIESRLLEHPAVREA 2619
Score = 31.7 bits (72), Expect = 1.1
Identities = 39/141 (27%), Positives = 48/141 (34%), Gaps = 46/141 (32%)
Query: 21 AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-------RWLRTGRYK 73
A ++D + +VP G GEL + G GY + T E D R RTG
Sbjct: 2517 AYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTG--- 2573
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGG 132
D LR DG + VGRI + IRG
Sbjct: 2574 ----------------------------------DLVRLRADGLVEYVGRIDHQVKIRGF 2599
Query: 133 ENIYPKEIEEFIQTHPNVLEA 153
I EIE + HP V EA
Sbjct: 2600 R-IELGEIESRLLEHPAVREA 2619
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 46.0 bits (110), Expect = 4e-05
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
EDGY ++GR+ D+I G + E+E + +HP V EA G PDE GE + + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534
Query: 174 KENAK 178
K+ +
Sbjct: 535 KDGVE 539
Score = 46.0 bits (110), Expect = 4e-05
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY ++GR+ D+I G + E+E + +HP V EA G PDE GE + + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534
Query: 464 KENAK 468
K+ +
Sbjct: 535 KDGVE 539
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 45.5 bits (108), Expect = 5e-05
Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 61/169 (36%)
Query: 21 AKVVDHNNRI-VPFGTPGELLIRGHCNM-LGYWEDEQKTKETI---------------GP 63
A +VD +P G GE+ + G+ N+ GYW ++T T P
Sbjct: 402 AVIVDPETASELPDGQIGEIWLHGN-NIGTGYWGKPEETAATFQNILKSRLSESHAEGAP 460
Query: 64 D--RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVV 121
D W+RTG Y G ++ DG +
Sbjct: 461 DDALWVRTGDY---------------------------GVYF-----------DGELYIT 482
Query: 122 GRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 167
GR+KD++I G N YP+++E Q + Y A+ VP ++ + V
Sbjct: 483 GRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531
Score = 36.6 bits (85), Expect = 0.030
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 457
DG + GR+KD++I G N YP+++E Q + Y A+ VP ++ + V
Sbjct: 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 44.0 bits (104), Expect = 2e-04
Identities = 43/172 (25%), Positives = 61/172 (35%), Gaps = 60/172 (34%)
Query: 18 SFQAKVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-------------- 62
S A +VD + +P G GE+ + G GYW ++T+ T G
Sbjct: 410 SQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHAD 469
Query: 63 --PD--RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYG 118
D WLRTG +G + DG
Sbjct: 470 GAADDGTWLRTG---------------------------DLGVYL-----------DGEL 491
Query: 119 QVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 167
+ GRI D+I+ G N YP++IE + + P V Y A+ VP E V
Sbjct: 492 YITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543
Score = 39.0 bits (91), Expect = 0.005
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 457
DG + GRI D+I+ G N YP++IE + + P V Y A+ VP E V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 43.0 bits (102), Expect = 3e-04
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 41/140 (29%)
Query: 31 VPFGTPGELLIRGHCNMLGYWEDEQKTKE-TIGPDRWLRTGRYKKTSFLYSAMAIRRKLK 89
+P G G LL+RG M GY +E+KT E + D W TG
Sbjct: 333 LPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTG------------------- 373
Query: 90 PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP- 148
D + EDG+ +VGR+K GGE + +EE +
Sbjct: 374 ------------------DIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILP 415
Query: 149 -NVLEAYAYGVPDERMGEEV 167
+ L A A VPDE+ GE++
Sbjct: 416 EDSLHA-AVEVPDEKKGEKI 434
Score = 31.0 bits (71), Expect = 1.4
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEV 457
EDG+ +VGR+K GGE + +EE + + L A A VPDE+ GE++
Sbjct: 380 EDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHA-AVEVPDEKKGEKI 434
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
EDGY VGR D+ I P E+E + HP V EA PD I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377
Query: 462 KLKENAKLNAD---DIRTFCKGKVSKF 485
LK + + + ++ + +++ +
Sbjct: 378 VLKPGYEPSRELALELFAHVRERLAPY 404
Score = 38.5 bits (90), Expect = 0.006
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
G++ + D+ EDGY VGR D+ I P E+E + HP V EA P
Sbjct: 308 GYYRT--GDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSP 365
Query: 160 DERMGEEVGISIKLKENA 177
D I LK
Sbjct: 366 DPIRLAVPKAYIVLKPGY 383
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 40.7 bits (96), Expect = 0.002
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 45/122 (36%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
GE+L+RG MLGY + D W TG
Sbjct: 305 GEILVRGS-LMLGYLGEPPA------TDDWWATG-------------------------- 331
Query: 97 QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRG-GENIYPKEIEEFIQTHPNVLEAYA 155
D L E+GY + GR K++II G N+ P+ +E +Q P + +A
Sbjct: 332 -----------DLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380
Query: 156 YG 157
+G
Sbjct: 381 FG 382
Score = 33.8 bits (78), Expect = 0.19
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 402 LREDGYGQVVGRIKDMIIRG-GENIYPKEIEEFIQTHPNVLEAYAYG 447
L E+GY + GR K++II G N+ P+ +E +Q P + +A +G
Sbjct: 336 LDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFG 382
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 40.5 bits (95), Expect = 0.002
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
GE+ +RG GY++DE +T+E I D WL TG
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTG 492
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 39.7 bits (93), Expect = 0.003
Identities = 32/140 (22%), Positives = 47/140 (33%), Gaps = 51/140 (36%)
Query: 31 VPFGTPGELLIRGHCNML----GYWEDEQKTKETI------GPDRWLRTGRYKKTSFLYS 80
P G PGE+L R GY ++E T+ + D W RTG
Sbjct: 294 APVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGD--------- 344
Query: 81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQV--VGRIKDMIIRGGENIYPK 138
+LR+D G+ + R+ D EN+
Sbjct: 345 ------------------------------LLRQDADGRWYFLDRLGDTFRWKSENVSTG 374
Query: 139 EIEEFIQTHPNVLEAYAYGV 158
E+ + + P+V EA YGV
Sbjct: 375 EVADVLGAIPSVAEANVYGV 394
Score = 37.8 bits (88), Expect = 0.010
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 392 RSIFEK-DQF-----VLREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 443
R +F K D + +LR+D G+ + R+ D EN+ E+ + + P+V EA
Sbjct: 330 RDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEA 389
Query: 444 YAYGV 448
YGV
Sbjct: 390 NVYGV 394
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 39.2 bits (91), Expect = 0.006
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 369 ARIYHYKKYLREEENITVPDSAGRSIFEK-DQFVLREDGYGQVVGRIKDMIIRGGENIYP 427
AR YH + L E + P AG ++ D R DG + GRI + G I
Sbjct: 862 ARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIEL 921
Query: 428 KEIEEFIQTHPNVLEA 443
EIE + HP V EA
Sbjct: 922 GEIEARLLEHPWVREA 937
Score = 38.0 bits (88), Expect = 0.012
Identities = 37/156 (23%), Positives = 52/156 (33%), Gaps = 41/156 (26%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
++D + VP G GEL + G GY T E PD ++ R +T
Sbjct: 3373 ACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRT---- 3428
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D R DG + +GR+ + G I E
Sbjct: 3429 ---------------------------GDLARYRADGVIEYIGRVDHQVKIRGFRIELGE 3461
Query: 140 IEEFIQTHPNVLEAY----------AYGVPDERMGE 165
IE + HP V EA AY VP++ G+
Sbjct: 3462 IEARLLEHPWVREAVVLAVDGRQLVAYVVPEDEAGD 3497
Score = 38.0 bits (88), Expect = 0.015
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 369 ARIYHYKKYLREEENITVPDSAGRSIFEK-DQFVLREDGYGQVVGRIKDMIIRGGENIYP 427
AR YH + L E + P G ++ D R DG + +GR+ + G I
Sbjct: 3400 ARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIEL 3459
Query: 428 KEIEEFIQTHPNVLEAY----------AYGVPDERMGE 455
EIE + HP V EA AY VP++ G+
Sbjct: 3460 GEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDEAGD 3497
Score = 35.3 bits (81), Expect = 0.092
Identities = 39/153 (25%), Positives = 50/153 (32%), Gaps = 45/153 (29%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM 82
V+D +P G GEL + G GY E T E PD + G LY
Sbjct: 4880 VLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPG-----GRLYRTG 4934
Query: 83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIE 141
+ R R DG +GR+ + IRG I EIE
Sbjct: 4935 DLARY-------------------------RADGVIDYLGRVDHQVKIRGFR-IELGEIE 4968
Query: 142 EFIQTHPNVLEAY-------------AYGVPDE 161
++ HP V EA Y VP +
Sbjct: 4969 ARLREHPAVREAVVIAQEGAVGKQLVGYVVPQD 5001
Score = 34.2 bits (78), Expect = 0.19
Identities = 35/139 (25%), Positives = 41/139 (29%), Gaps = 43/139 (30%)
Query: 21 AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD------RWLRTGRYKK 74
++D N VP G GEL + G GY T E P R RTG
Sbjct: 836 CYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTG---- 891
Query: 75 TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
D R DG + GRI + G
Sbjct: 892 ---------------------------------DLARYRADGVIEYAGRIDHQVKLRGLR 918
Query: 135 IYPKEIEEFIQTHPNVLEA 153
I EIE + HP V EA
Sbjct: 919 IELGEIEARLLEHPWVREA 937
Score = 29.9 bits (67), Expect = 4.3
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 369 ARIYHYKKYLREEENITVP--DSAGRSIFEKDQFVLREDGYGQVVGRIKDMI-IRGGENI 425
AR Y + L E + P GR D R DG +GR+ + IRG I
Sbjct: 4904 ARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFR-I 4962
Query: 426 YPKEIEEFIQTHPNVLEAY-------------AYGVPDE 451
EIE ++ HP V EA Y VP +
Sbjct: 4963 ELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQD 5001
Score = 29.9 bits (67), Expect = 4.4
Identities = 35/103 (33%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 369 ARIYHYKKYLREEENITVPD----SAGRSIFEKDQFVLREDGYGQVVGRIKDMI-IRGGE 423
AR Y + L E VPD S R D R DG + +GRI + IRG
Sbjct: 2356 ARGYLNRPGLTAER--FVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFR 2413
Query: 424 NIYPKEIEEFIQTHPNVLEA-------------YAYGVPDERM 453
I EIE +Q HP V EA AY VPD+
Sbjct: 2414 -IELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAA 2455
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 37.6 bits (88), Expect = 0.012
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
GE+L+RG GY++ E+ T+E + D W TG
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTG 541
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 37.5 bits (88), Expect = 0.013
Identities = 33/138 (23%), Positives = 44/138 (31%), Gaps = 48/138 (34%)
Query: 31 VPFGTPGELL--IRGHCNMLGYWEDEQKTKETI-------GPDRWLRTGRYKKTSFLYSA 81
V G G L+ I GY D + +++ I G D W TG
Sbjct: 398 VKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKG-DAWFNTG----------- 444
Query: 82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
L+ D G+ Q V R+ D GEN+ E+E
Sbjct: 445 ----------------------DLMRDD----GFGHAQFVDRLGDTFRWKGENVATTEVE 478
Query: 142 EFIQTHPNVLEAYAYGVP 159
+ P V EA YGV
Sbjct: 479 NALSGFPGVEEAVVYGVE 496
Score = 36.4 bits (85), Expect = 0.036
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 401 VLREDGYG--QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 449
++R+DG+G Q V R+ D GEN+ E+E + P V EA YGV
Sbjct: 446 LMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE 496
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 37.4 bits (88), Expect = 0.018
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP V EA G PD+ G+ +
Sbjct: 495 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
Score = 37.4 bits (88), Expect = 0.018
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
EDGY + GR+ D++ G + EIE + HP V EA G PD+ G+ +
Sbjct: 495 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 36.4 bits (84), Expect = 0.032
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
+DGY + GR+ D+I G I E+E + +HP EA G+ E G+ + + L
Sbjct: 525 KDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL 584
Query: 464 KENAKLNAD 472
E + +
Sbjct: 585 VEGVPYSEE 593
Score = 36.4 bits (84), Expect = 0.033
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
G+++S D +DGY + GR+ D+I G I E+E + +HP EA G+
Sbjct: 513 GYYFS--GDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIE 570
Query: 160 DERMGEEVGISIKLKENAKLNAYEDKSI 187
E G+ + + L E + KS+
Sbjct: 571 HEVKGQGIYAFVTLVEGVPYSEELRKSL 598
>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase.
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the
first step in aromatic catabolism of phenylacetic acid
(PA) into phenylacetyl-CoA (PA-CoA). Often located in a
conserved gene cluster with enzymes involved in
phenylacetic acid activation (paaG/H/I/J),
phenylacetate-CoA ligase has been found among the
proteobacteria as well as in gram positive prokaryotes.
In the B-subclass proteobacterium Azoarcus evansii,
phenylacetate-CoA ligase has been shown to be induced
under aerobic and anaerobic growth conditions. It
remains unclear however, whether this induction is due
to the same enzyme or to another isoenzyme restricted to
specific anaerobic growth conditions [Energy metabolism,
Other].
Length = 422
Score = 36.3 bits (84), Expect = 0.034
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 119 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK-ENA 177
++ GR DM+I G N++P ++EE I + Y + +E+ + ++LK E+
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY 371
Query: 178 KLNAYEDKSISSD 190
L +E S+ +
Sbjct: 372 TLRLHEQASLLAG 384
Score = 34.8 bits (80), Expect = 0.086
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 409 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK---- 464
++ GR DM+I G N++P ++EE I + Y + +E+ + ++LK
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY 371
Query: 465 -----ENAKLNADDIRTFCKGKV 482
E A L A +I+ K +V
Sbjct: 372 TLRLHEQASLLAGEIQHTIKQEV 394
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 35.9 bits (83), Expect = 0.055
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 160
E+GY +V R D I G + IE I HP VLE + G+ D
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550
Score = 35.9 bits (83), Expect = 0.055
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 450
E+GY +V R D I G + IE I HP VLE + G+ D
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 35.2 bits (81), Expect = 0.084
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 32 PFGTP--GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
P G P GE+ +RG C GY+++ + T+E + D W TG
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTG 498
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 34.4 bits (79), Expect = 0.16
Identities = 37/149 (24%), Positives = 44/149 (29%), Gaps = 50/149 (33%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-------RWLRTG---RY 72
V+D VP G GEL I G GY + T E D R RTG RY
Sbjct: 3422 VLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481
Query: 73 KKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGG 132
R DG + +GRI + G
Sbjct: 3482 ----------------------------------------RADGVIEYLGRIDHQVKIRG 3501
Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDE 161
I EIE + HP+V EA
Sbjct: 3502 FRIELGEIEARLLQHPSVREAVVLARDGA 3530
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 33.9 bits (77), Expect = 0.22
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 448
+D+ + DG+ R D + GG N+ P+E+E I V EA V
Sbjct: 370 RDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421
Score = 33.1 bits (75), Expect = 0.41
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 108 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 158
D+ + DG+ R D + GG N+ P+E+E I V EA V
Sbjct: 371 DRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 33.3 bits (76), Expect = 0.27
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 385 TVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
R + +D+ +DG ++GR +++ GG N+ P + + ++ +P V A
Sbjct: 268 LSSAGLARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRV-RAA 326
Query: 445 AYGVPDERM 453
A + R+
Sbjct: 327 AVRLDGRRL 335
Score = 29.5 bits (66), Expect = 3.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 108 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 163
D+ +DG ++GR +++ GG N+ P + + ++ +P V A A + R+
Sbjct: 281 DRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRV-RAAAVRLDGRRL 335
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 32.9 bits (75), Expect = 0.34
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 119 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
++ GR D +I G N++P +IEE + P + Y + +E+ + ++L + +
Sbjct: 315 RITGRSDDXLIIRGVNVFPSQIEEILVKFPELSPHYQITLERVGHLDELIVEVELSDESA 374
Query: 179 LNAYEDKSISSDY-HEFETM 197
E + I D H ++M
Sbjct: 375 DTYIEREKIRRDLIHRIKSM 394
Score = 32.9 bits (75), Expect = 0.37
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 409 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 468
++ GR D +I G N++P +IEE + P + Y + +E+ + ++L + +
Sbjct: 315 RITGRSDDXLIIRGVNVFPSQIEEILVKFPELSPHYQITLERVGHLDELIVEVELSDESA 374
Query: 469 LNADDIRTFCK 479
+ +
Sbjct: 375 DTYIEREKIRR 385
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 33.0 bits (76), Expect = 0.37
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 18 SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
++ V+D +VP G GEL I G GY + T E PD + +
Sbjct: 266 NYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGR 323
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 31.5 bits (72), Expect = 0.91
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 119 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
++ GR DM+I G N++P +IE + P V Y
Sbjct: 328 RIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHY 363
Score = 31.5 bits (72), Expect = 0.91
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 409 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
++ GR DM+I G N++P +IE + P V Y
Sbjct: 328 RIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHY 363
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 31.4 bits (72), Expect = 1.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
++D +P G GE++I G GY + +KT E
Sbjct: 330 LIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAE 367
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 31.6 bits (72), Expect = 1.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 29 RIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
++ P G E+ ++G GY +D + T
Sbjct: 416 KLAPVGDKYEVRVKGPNVTPGYHKDPELTAA 446
>gnl|CDD|187785 cd09654, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Small alpha-helical protein; signature gene for subtype
III-B.
Length = 127
Score = 29.4 bits (66), Expect = 2.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 373 HYKKYLREEENITVPDSAGRSIFEKD 398
H +L+E T D+A + + EKD
Sbjct: 74 HILYWLKERNLKTGVDNALKELMEKD 99
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 30.5 bits (69), Expect = 2.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 22 KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
++D +P G GE++I G GY + +KT E
Sbjct: 328 FIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAE 365
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 30.5 bits (69), Expect = 2.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPD----RWLRTG 70
GE++I G LGY+++++KT E D RW TG
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG 540
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 30.4 bits (69), Expect = 2.4
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 393 SIFEKDQFVLR--------EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 440
I + ++ R + G GR + G ++ +E+ HP V
Sbjct: 323 KISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378
Score = 30.0 bits (68), Expect = 3.1
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 150
+ G GR + G ++ +E+ HP V
Sbjct: 342 DQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 30.4 bits (68), Expect = 2.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 37 GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
GE+ IRG GY++ E TKE + D WL TG
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTG 501
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 30.3 bits (69), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 29 RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
++VP G E+ ++G GYW D + T E + + R G
Sbjct: 359 KLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400
>gnl|CDD|222727 pfam14388, DUF4419, Domain of unknown function (DUF4419). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
348 and 454 amino acids in length.
Length = 297
Score = 29.5 bits (67), Expect = 3.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 302 IDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTT 354
DP + N D++ EF E++ K++K P+L+ + P FSTTT
Sbjct: 60 EDPGLLYDNDWDELTEEFTEEIQKNIK----DPSLR------DLITPDFSTTT 102
>gnl|CDD|221465 pfam12216, m04gp34like, Immune evasion protein. This protein is
found in archaea and viruses. Proteins in this family
are typically between 265 to 342 amino acids in length.
The proteins in this family are or are related to the
m04 encoded protein gp34 of pathogenic microorganisms
such as murine cytomegalovirus. m06 and m152 genes are
expressed earlier in the intracellular replication
phases of these microorganism' life cycles. They
function to inhibit MHC-1 loading and export. gp34 is
theorized to prevent immune reactions from NK cells
which would ordinarily recognise and attack cells
lacking MHC.
Length = 268
Score = 29.4 bits (66), Expect = 3.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 206 NRTTPYYQWWSYDPNQSYVTHDNGFPVDY 234
N T P Y + VT+ NGF VD
Sbjct: 113 NGTIPNYYRSRGLYTKKTVTNKNGFKVDN 141
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed.
Length = 270
Score = 28.2 bits (64), Expect = 8.2
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 412 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY--------GVPDERMGEEVGISI-- 461
GR + + I PK I+EF++T + Y G D + +G+
Sbjct: 81 GRTEPLTI-----YGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGP 135
Query: 462 ---KLKENAKLNADDIRT 476
KLK + +D R
Sbjct: 136 LFGKLKRGEDVTLEDGRI 153
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 28.5 bits (64), Expect = 9.0
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 195 ETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHN 250
E +Y +I + RT + + G P D +L+ K+ L H
Sbjct: 86 EPLYPAIAWYDRRTEEEAEELRKQDPGLAIYEITGLPPDPIYSLF--KILWLREHR 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,458,564
Number of extensions: 2554514
Number of successful extensions: 3010
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2978
Number of HSP's successfully gapped: 407
Length of query: 485
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 384
Effective length of database: 6,457,848
Effective search space: 2479813632
Effective search space used: 2479813632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)