RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5016
(485 letters)
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 178 bits (455), Expect = 2e-50
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 37/158 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+++V D ++R V G G LL RG + GY++ E+ + D + RTG
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG--------- 412
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D L DGY V GR KD I RGGE + +E
Sbjct: 413 ----------------------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
+E + HP V +A +PD+ +GE + I ++ A
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482
Score = 133 bits (338), Expect = 4e-34
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +GE +
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 461 IKLKENAKLNADDIRTFCKGK 481
I ++ A A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 177 bits (451), Expect = 1e-49
Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 37/158 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ K+VD R VP G G L RG GY++ + + D + +G
Sbjct: 371 EIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG--------- 421
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D DG +VVGRIKD I RGGE I +E
Sbjct: 422 ----------------------------DLVQRTPDGNLRVVGRIKDQINRGGEKIASEE 453
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
IE+ I HP V+ A + DE+ GE+ I +
Sbjct: 454 IEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE 491
Score = 134 bits (339), Expect = 3e-34
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
DG +VVGRIKD I RGGE I +EIE+ I HP V+ A + DE+ GE+
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484
Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
I + R + ++++
Sbjct: 485 IVSRNPELKAVVLRRHLMELGIAQY 509
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 173 bits (442), Expect = 5e-48
Identities = 40/160 (25%), Positives = 58/160 (36%), Gaps = 37/160 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+ V D +P G G L+ RG GY++ Q + + +G
Sbjct: 366 EVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG--------- 416
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + +GY V GR KD I RGGE I +E
Sbjct: 417 ----------------------------DLISIDPEGYITVQGREKDQINRGGEKIAAEE 448
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
IE + HP V+ A + DE MGE+ + +KE +
Sbjct: 449 IENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRA 488
Score = 129 bits (326), Expect = 2e-32
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
+ +GY V GR KD I RGGE I +EIE + HP V+ A + DE MGE+
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479
Query: 461 IKLKENAKLNADDIRTFCKGK 481
+ +KE + A +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 166 bits (422), Expect = 6e-46
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 20 QAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
A+V D + +P G G + ++G GYW +KTK D + TG
Sbjct: 330 SARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG-------- 381
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D + E GY ++GR KD++I GG N+YPK
Sbjct: 382 -----------------------------DLGKIDERGYVHILGRGKDLVITGGFNVYPK 412
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
EIE I P V+E+ GVP GE V + + A ++ +
Sbjct: 413 EIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQ 457
Score = 131 bits (333), Expect = 1e-33
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E GY ++GR KD++I GG N+YPKEIE I P V+E+ GVP GE V +
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ A ++ + G+++KF
Sbjct: 448 DKGATIDEAQVLHGLDGQLAKF 469
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 161 bits (411), Expect = 2e-44
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 42/166 (25%)
Query: 20 QAKVVD---HNNRIVPFGTPGELLIRGH-CNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
+ ++V + IV G GEL++ +GY Q T E + D W RT
Sbjct: 331 EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTS----- 384
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
D V +G +++GR+ DMII GGENI
Sbjct: 385 --------------------------------DVAVWTPEGTVRILGRVDDMIISGGENI 412
Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
+P EIE + T P V E G+ D+R G+ V + + L+A
Sbjct: 413 HPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Score = 131 bits (331), Expect = 2e-33
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447
Query: 461 IKLKENAKLNADDIRTFCKG 480
+ + L+AD + TFC+
Sbjct: 448 VVPRLGETLSADALDTFCRS 467
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 149 bits (379), Expect = 6e-40
Identities = 43/166 (25%), Positives = 62/166 (37%), Gaps = 40/166 (24%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
VVD +R +P G GE+++RG GYW + T+ + W TG
Sbjct: 331 TVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTG--------- 380
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRI--KDMIIRGGENIYP 137
D DGY GR K++I GGEN+YP
Sbjct: 381 ----------------------------DMGRFDADGYLFYAGRAPEKELIKTGGENVYP 412
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
E+E ++ HP + +A GVPD + E + K + A
Sbjct: 413 AEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADA 458
Score = 117 bits (295), Expect = 2e-28
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 404 EDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
DGY GR K++I GGEN+YP E+E ++ HP + +A GVPD + E +
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446
Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
K + AD + F ++++
Sbjct: 447 VCKPGESIAADALAEFVASLIARY 470
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 148 bits (377), Expect = 1e-39
Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 41/152 (26%)
Query: 20 QAKVVDHNNRIVPF---GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
+ ++V+ + + + GE+ +RG Y T D + RTG
Sbjct: 334 ELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG------ 387
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGR-IKDMIIRGGENI 135
D V DGY ++VGR D+I GG I
Sbjct: 388 -------------------------------DMAVRDPDGYVRIVGRKATDLIKSGGYKI 416
Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EIE + HP V EA G PD +GE +
Sbjct: 417 GAGEIENALLEHPEVREAAVTGEPDPDLGERI 448
Score = 116 bits (293), Expect = 3e-28
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 398 DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
D V DGY ++VGR D+I GG I EIE + HP V EA G PD +GE
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 457 VGISIKLKE-NAKLNADDIRTFCKGKVSKF 485
+ I + A + +++
Sbjct: 448 IVAWIVPADPAAPPALGTLADHVAARLAPH 477
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 147 bits (373), Expect = 4e-39
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 39/148 (26%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
V + I G GE++I+ + YW + T++ + W RTG
Sbjct: 347 DVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTG--------- 395
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + ++GY + R+KDMII GGEN+YP E
Sbjct: 396 ----------------------------DIGEIDDEGYLYIKDRLKDMIISGGENVYPAE 427
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
IE I P V E G+PDE+ GE
Sbjct: 428 IESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Score = 114 bits (289), Expect = 1e-27
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
++GY + R+KDMII GGEN+YP EIE I P V E G+PDE+ GE +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ +++ I +C +++++
Sbjct: 462 DQ-NEVSEQQIVEYCGTRLARY 482
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 140 bits (355), Expect = 2e-36
Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
++ ++ D VP G G+L I+G + YW + +K++ T W+R+G
Sbjct: 361 YEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSG-------- 411
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
D++ +G GR DM+ G+ + P
Sbjct: 412 -----------------------------DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPV 442
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
E+E + H VLEA GV + + LK
Sbjct: 443 EVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREFA 481
Score = 101 bits (253), Expect = 5e-23
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D++ +G GR DM+ G+ + P E+E + H VLEA GV +
Sbjct: 412 DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKT 470
Query: 458 GISIKLKENAK---LNADDIRTFCKGKVSKF 485
+ LK + A++++ F K +++
Sbjct: 471 RAFVVLKREFAPSEILAEELKAFVKDRLAPH 501
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 138 bits (349), Expect = 7e-36
Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 44/158 (27%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
K+ + GEL+I+G M GY T + + TG
Sbjct: 337 DVKIKN-----PNKEGHGELMIKGANVMNGYLYPTDLTGTFE--NGYFNTG--------- 380
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
D + +GY + R KD+II GGENIYP +
Sbjct: 381 ----------------------------DIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ 412
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
IE + P + +A G PD+ G+ + + +
Sbjct: 413 IETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI 450
Score = 119 bits (301), Expect = 2e-29
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
+GY + R KD+II GGENIYP +IE + P + +A G PD+ G+ +
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ + ++ + + ++K+
Sbjct: 447 ESD--ISKAQLIAYLSKHLAKY 466
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 136 bits (346), Expect = 3e-35
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 38/167 (22%)
Query: 18 SFQAKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
+ + K+VD +P PGE+ IRG M GY D + T TI + WL TG
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG------ 416
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
IG+ +D +V R+K++I G +
Sbjct: 417 ---------------------DIGYI----------DDDDELFIVDRLKELIKYKGFQVA 445
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
P E+E + HP + +A G+ DE GE + E ++ E
Sbjct: 446 PAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDE 492
Score = 101 bits (254), Expect = 3e-23
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
+D +V R+K++I G + P E+E + HP + +A G+ DE GE +
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
E ++ D+I+ + +V +
Sbjct: 483 SEKSQATEDEIKQYISKQVIFY 504
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 136 bits (346), Expect = 3e-35
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 38/167 (22%)
Query: 18 SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
F+AKV+D + + GE+ ++G M GY + + TKE I + WL TG
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG------ 423
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
D E+ + +V R+K +I G +
Sbjct: 424 -------------------------------DIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
P E+E + HP++ +A GVPD GE G + L+ + E
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKE 499
Score = 101 bits (253), Expect = 4e-23
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+ + +V R+K +I G + P E+E + HP++ +A GVPD GE G + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ + ++ + +VS
Sbjct: 490 ESGKNMTEKEVMDYVASQVSNA 511
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 136 bits (344), Expect = 6e-35
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 42/170 (24%)
Query: 20 QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP----DRWLRTGRYKK 74
+ KV+ + R + G GE++IRG GYW+ E++ +E ++ RTG
Sbjct: 366 ELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG---- 421
Query: 75 TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
+GF D E+G+ R+K++I G
Sbjct: 422 -----------------------DVGFI-----D-----EEGFLHFQDRVKEVIKYKGYT 448
Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184
I P E+E + H V++ G PDE GE I LK + E+
Sbjct: 449 IAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEE 498
Score = 106 bits (267), Expect = 8e-25
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
E+G+ R+K++I G I P E+E + H V++ G PDE GE I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487
Query: 464 KEN--AKLNADDIRTFCKGKVSKF 485
K K++ +DI + + ++S +
Sbjct: 488 KPEYRGKVDEEDIIEWVRERISGY 511
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 134 bits (340), Expect = 3e-34
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 38/167 (22%)
Query: 18 SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
F+AKVVD + + GEL +RG M GY + + T I D WL +G
Sbjct: 368 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG------ 421
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
I ++ ED + +V R+K +I G +
Sbjct: 422 ---------------------DIAYW----------DEDEHFFIVDRLKSLIKYKGYQVA 450
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
P E+E + HPN+ +A G+PD+ GE + L+ + E
Sbjct: 451 PAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 497
Score = 99 bits (250), Expect = 1e-22
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
+ + +I + +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVTTA 509
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 121 bits (306), Expect = 2e-29
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 38/167 (22%)
Query: 18 SFQAKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
+ + K+VD + + PGE+ IRGH M GY + T ETI D WL TG
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG------ 463
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
IG D +D +V R+K++I G +
Sbjct: 464 ---------------------DIGLI-----D-----DDDELFIVDRLKELIKYKGFQVA 492
Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
P E+E + HP++ + + +E GE + ++++L+ +
Sbjct: 493 PAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDD 539
Score = 88.2 bits (219), Expect = 2e-18
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
+D +V R+K++I G + P E+E + HP++ + + +E GE +
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
++++L+ DD++ F +V +
Sbjct: 530 SKDSELSEDDVKQFVSKQVVFY 551
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 99.9 bits (250), Expect = 1e-22
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 39/148 (26%)
Query: 20 QAKVVDHNNRIVPF-G-TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+ +V D R VP G GE+ ++G GY+ +E+ T+ + PD + RTG
Sbjct: 365 RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG------- 417
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D V E+GY ++ R+KD+I GGE I
Sbjct: 418 ------------------------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGE 165
++E + HP V EA +P + E
Sbjct: 448 VDLENALMGHPKVKEAAVVAIPHPKWQE 475
Score = 85.6 bits (213), Expect = 5e-18
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 375 KKYLREEENITVPDSAGRSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYP 427
Y EE A RS D F V E+GY ++ R+KD+I GGE I
Sbjct: 395 GGYYGNEE-------ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447
Query: 428 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
++E + HP V EA +P + E + + + K +K+
Sbjct: 448 VDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKW 505
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 98.9 bits (247), Expect = 3e-22
Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 41/148 (27%)
Query: 17 SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
++ + V G + I G M GY+ D+ E WL TG
Sbjct: 392 PEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAA-TGWLDTG------ 444
Query: 77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
+G+ DGY V GRIKD+II G NI+
Sbjct: 445 ---------------------DLGYLL-----------DGYLYVTGRIKDLIIIRGRNIW 472
Query: 137 PKEIEEFIQTHPNVLEAY--AYGVPDER 162
P++IE + P + A+ E+
Sbjct: 473 PQDIEYIAEQEPEIHSGDAIAFVTAQEK 500
Score = 63.9 bits (156), Expect = 5e-11
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEEVGISIKLKENA 467
V GRIKD+II G NI+P++IE + P + A+ E+ + + I+ + +
Sbjct: 456 VTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK----IILQIQCRISD 511
Query: 468 KLNADDIRTFCKGKVSK 484
+ + ++
Sbjct: 512 EERRGQLIHALAARIQS 528
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 86.5 bits (215), Expect = 3e-18
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 43/154 (27%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGH-----CNMLGYWEDEQKTKETIGPDRWLRTGRYK 73
+ +++D ++P GT G++ IR GY ++ KT I + G
Sbjct: 383 YDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLG--- 438
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
D+ + EDGY Q +GR D+I G
Sbjct: 439 ----------------------------------DRGIKDEDGYFQFMGRADDIINSSGY 464
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
I P E+E + HP V+E PD GE V
Sbjct: 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
Score = 60.0 bits (146), Expect = 9e-10
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
Query: 458 GISIKLKENAKLN-----ADDIRTFCKGKVS 483
+ L + +++ K +
Sbjct: 499 KAFVVLASQFLSHDPEQLTKELQQHVKSVTA 529
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 84.3 bits (209), Expect = 2e-17
Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 50/160 (31%)
Query: 20 QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG--------PDRWLRTG 70
+ K++D F GE+ ++ + GYW ++T+ +LRTG
Sbjct: 382 EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441
Query: 71 RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR 130
+GF + + V GRIKD+II
Sbjct: 442 ---------------------------DLGFLH-----------ENELYVTGRIKDLIII 463
Query: 131 GGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 167
G+N YP++IE + + + + A+ + +E +
Sbjct: 464 YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503
Score = 54.2 bits (131), Expect = 5e-08
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 457
V GRIKD+II G+N YP++IE + + + + A+ + +E +
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 74.5 bits (184), Expect = 2e-14
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 43/154 (27%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCN-----MLGYWEDEQKTKETIGPDRWLRTGRYK 73
++ +++D + R+ G GE++I + Y +D ++T+ET + TG
Sbjct: 402 YKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG-YYHTG--- 457
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
D + EDGY VGR D+I G
Sbjct: 458 ----------------------------------DMAWMDEDGYLWFVGRADDIIKTSGY 483
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
+ P E+E + HP VLE GVPD G+ +
Sbjct: 484 KVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517
Score = 52.2 bits (126), Expect = 2e-07
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY VGR D+I G + P E+E + HP VLE GVPD G+ + +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523
Query: 464 KENAKLN---ADDIRTFCK 479
++ + ++++ K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 4e-09
Identities = 88/598 (14%), Positives = 166/598 (27%), Gaps = 222/598 (37%)
Query: 14 LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWED-----EQKTKETIGPDR--- 65
+ + S + + H + P + L E + T+ D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFF--IASQL--QEQFNKILPEPTEGFAADDEPTT 56
Query: 66 ----WLRTGRYKKTSFL-YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQV 120
+ FL Y + ++P + Q Q+ +L +F E+ Y +
Sbjct: 57 PAELVGK--------FLGY----VSSLVEPSKVGQFDQV---LNLCLTEF---ENCYLE- 97
Query: 121 VGRIKDMIIRGGENI------YPKEIEEFIQTHPNVLEAY-----AYGVPDERMGEEVGI 169
G +I +E + + +++ Y P ++
Sbjct: 98 -----------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---- 142
Query: 170 SIKLK----ENAKL----------NAY--EDKSISSDYHEF-----ETMYD---SIMAHP 205
S + NA+L + Y E + + YH + + ++
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 206 NRTTPYYQW------WSYDPNQSYVTHDNGFPVDY-NRALYSLKMSSLL----------- 247
+ W +P+ T D DY S + ++
Sbjct: 203 LDAEKVFTQGLNILEWLENPSN---TPD----KDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 248 ----PHNFSAEVEAHYNQKSDI----------DWE-YADKCEKSMQ-----GWA------ 281
P + ++ + WE + K++ G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 282 -KTLS------SEYNSYAGP-----VTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV-- 327
+L S N+ P + NL E VQ+ ++ K V
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSI---SNL--TQEQVQDYVNKTNSHLPAG--KQVEI 368
Query: 328 ------KNYLIT--P-ALKGL-YHFKKWMNP--------KFSTTTRKVALTW-------P 362
KN +++ P +L GL +K P FS RK+ + P
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--RKLKFSNRFLPVASP 426
Query: 363 NSMDSEARIYHYKKYLREEENITVPDSAGRSI-FEKDQFVLR------EDGY------GQ 409
+H L ++ D ++ F ++ DG G
Sbjct: 427 ---------FH-SHLLVPASDLINKDLVKNNVSFNAKD--IQIPVYDTFDGSDLRVLSGS 474
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 467
+ RI D IIR + + +F TH +L+ +G P G G+ + N
Sbjct: 475 ISERIVDCIIR--LPVKWETTTQFKATH--ILD---FG-P----GGASGLGVLTHRNK 520
Score = 40.4 bits (94), Expect = 0.001
Identities = 60/408 (14%), Positives = 121/408 (29%), Gaps = 144/408 (35%)
Query: 141 EEFIQTHPNVLEAYAYG----VPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFET 196
E+F + P E +A P E +G+ +G L E +K+ ++ ++ EFE
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ-VLNLCLTEFEN 93
Query: 197 MY----D--SIMAH---PNRTTP---------YYQWWSYDPNQSYVTHDN---------- 228
Y D ++ A N TT Y ++
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 229 ----------GFPVDYN---RALYSL--------------KMSSLLPHNFSAEVEAHYNQ 261
G DY R LY +S L+ + + E + Q
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT--TLDAEKVFTQ 211
Query: 262 KSDI-DWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPL-EIVQNRIDDVEYEF 319
+I +W ++ + T +Y P++ PL ++Q
Sbjct: 212 GLNILEW---------LENPSNTPDKDYLLSI-PISC------PLIGVIQ---------- 245
Query: 320 QEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKV-----------ALTWPNSMDSE 368
+ +Y++T L G + + T +W + S
Sbjct: 246 -------LAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 369 ARIYHYKKY--LREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKD---MI-IRGG 422
+ + +R E P+++ +D E+ G M+ I
Sbjct: 297 RKAITVLFFIGVRCYE--AYPNTSLPPSILEDS---LENNEGV-------PSPMLSISN- 343
Query: 423 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 470
+ +++++++ N ++ ++ + I L N N
Sbjct: 344 --LTQEQVQDYVN-KTN-----SHLPAGKQ------VEISLV-NGAKN 376
Score = 35.8 bits (82), Expect = 0.039
Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 76/242 (31%)
Query: 267 WEYADKCEKSMQGWA---------KTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEY 317
W AD K G++ L+ + G +R N ++ I D +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-RIRENYS---AMIFETIVDGKL 1701
Query: 318 EFQEKMFKDVKNYLITPALKGLYHFKKWMNPK---FSTTTRKVAL-TWPNSMDSEARIYH 373
+ EK+FK++ + + Y F+ + K +T + AL +A +
Sbjct: 1702 KT-EKIFKEINEHSTS------YTFR---SEKGLLSATQFTQPALTLM-----EKA-AF- 1744
Query: 374 YKKYLREEENITVPDS-AGRSIFEKDQFVLREDGYGQVVGR-----IKDMI----IRGGE 423
+ L+ + I + AG S+ E Y + I+ ++ RG
Sbjct: 1745 --EDLKSKGLIPADATFAGHSLGE----------YAALASLADVMSIESLVEVVFYRG-- 1790
Query: 424 NIYPKEIEEFIQTHPNVLEAYA-YGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482
++ + Y + R+ A + + ++ + +V
Sbjct: 1791 ----MTMQVAVPRDELGRSNYGMIAINPGRVA------------ASFSQEALQYVVE-RV 1833
Query: 483 SK 484
K
Sbjct: 1834 GK 1835
Score = 33.1 bits (75), Expect = 0.29
Identities = 41/228 (17%), Positives = 64/228 (28%), Gaps = 100/228 (43%)
Query: 119 QVVGRIKDMIIRGGENIYPKEIEEFIQTHP---NVLEAYAYGVPDERMGEEVGISIK--L 173
Q G M G ++Y +T +V A D + G SI +
Sbjct: 1627 QEQG----M----GMDLY--------KTSKAAQDVWNR-A----DNHFKDTYGFSILDIV 1665
Query: 174 KENAK-----LNAYEDKSISSDY--HEFETMYD------SIMAHPNRTTPYYQWWSYDPN 220
N + K I +Y FET+ D I N + Y +
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF------ 1719
Query: 221 QSYVTHDNGF--------P----VDYNRALYS-LKMSSLLPHNFSAEVEA-HYNQKSDID 266
+ G P ++ A + LK L+P + A H
Sbjct: 1720 ----RSEKGLLSATQFTQPALTLMEK--AAFEDLKSKGLIPADA---TFAGH-------- 1762
Query: 267 WEYADKCEKSMQGWAKTLSSEYN---SYAGPVTLRRNLIDPLEIVQNR 311
S+ G EY S A +++ +E+V R
Sbjct: 1763 ---------SL-G-------EYAALASLADVMSIE----SLVEVVFYR 1789
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 53.5 bits (129), Expect = 8e-08
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 20 QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-----------PDRWL 67
++VD P GT GE+ + G GYW+ +++ T G WL
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462
Query: 68 RTG 70
RTG
Sbjct: 463 RTG 465
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 8e-06
Identities = 60/467 (12%), Positives = 127/467 (27%), Gaps = 156/467 (33%)
Query: 66 WLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ--QQIGFFYSLVSDQFVLREDGYGQVVGR 123
WL + L+ Q+ QI ++ SD + +
Sbjct: 186 WLNLKNCNSPETV------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 124 IKDMIIRGGENIYPK------EIEEFIQTHPNVLEAYAYG-----------VPDERMGEE 166
++ ++ Y ++ + A+ V D +
Sbjct: 234 LRRLLK---SKPYENCLLVLLNVQ-----NAKAWNAFNLSCKILLTTRFKQVTD-FLSAA 284
Query: 167 VGISIKLKENAK-LNAYEDKSISSDY---------HEFET---MYDSIMA-----HPNRT 208
I L ++ L E KS+ Y E T SI+A
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 209 TPYYQWWSYDPNQSYV--THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAH------YN 260
++ + D + + + + P +Y R ++ S+ P + A + ++
Sbjct: 345 D-NWKHVNCDKLTTIIESSLNVLEPAEY-RKMF--DRLSVFPPS--AHIPTILLSLIWFD 398
Query: 261 QKSDIDWEYADKCEKS--MQGWAKTLSSEYNSY--------AGPVTLRRNLIDPLEIVQN 310
+K K ++ K + S L R+++D
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD------- 451
Query: 311 RIDDVEYEFQEKMFKDVKNYLITPALKGL------YHFKK------------------WM 346
Y + + LI P L +H K ++
Sbjct: 452 -----HYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 347 NPKFSTTTRKVALTWPNS---MDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLR 403
K R + W S +++ ++ YK Y+ + +
Sbjct: 504 EQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPK------------------- 540
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPN---VLEAY 444
Y ++V I D + + EN+ + + ++ + EA+
Sbjct: 541 ---YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 43.7 bits (102), Expect = 1e-04
Identities = 48/387 (12%), Positives = 111/387 (28%), Gaps = 114/387 (29%)
Query: 123 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAY 182
R+ ++ E + K +EE ++ N Y +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLR--IN------YKFLMSPI-----------------KT 100
Query: 183 EDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYN---RALY 239
E + S + D + Y+ NQ + ++ Y +AL
Sbjct: 101 EQRQPSMMTRMYIEQRDRL---------------YNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 240 SLK---------M-----SSLLPHNFSAEVEAHYNQKSDID----WEYADKCEKS----- 276
L+ + + + + +V Y + +D W C
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 277 -MQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPA 335
+Q + + S + + N+ + +Q + + + K +++ L+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQAELRRL---LKSKPYENC--LLV--- 249
Query: 336 LKGLYHFKKW--MNPKFST--TTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAG 391
L + + K W N TTR +T + + + + ++T+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAA----TTTHISLDHHSMTLTPDEV 303
Query: 392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYP---KEIEEFIQTHPNVLEAYAYGV 448
+S+ K + + R P I E I+ + + + V
Sbjct: 304 KSLLLK------------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-V 350
Query: 449 PDERMGEEVGISIKLKENAKLNADDIR 475
+++ + S+ L + R
Sbjct: 351 NCDKLTTIIESSLN-----VLEPAEYR 372
Score = 43.3 bits (101), Expect = 2e-04
Identities = 52/384 (13%), Positives = 106/384 (27%), Gaps = 120/384 (31%)
Query: 4 MNPTDLQFSTLSSSSFQAKVVDHNNRIVP----FGTP------GELLIRGHCNMLGYWED 53
++ + + S K +D + +P P E + R W
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLAT---W-- 344
Query: 54 EQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLR 113
D W K T+ + S++ L+P + ++ F L V
Sbjct: 345 ----------DNWKHVNCDKLTTIIESSLN---VLEPAEYRKM-----FDRL----SVFP 382
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK- 172
+I P +L + V + V K
Sbjct: 383 PS-----------------AHI-P----------TILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 173 --LKENAKLNAYEDKSISSDYH----EFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTH 226
+++ K + SI + ++ SI+ H N + P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYL---- 469
Query: 227 DNGFPVDYNRALYSLK------MSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGW 280
D F Y+ + LK +L F D + ++
Sbjct: 470 DQYF---YSHIGHHLKNIEHPERMTLFRMVF-----------LDFRF---------LE-- 504
Query: 281 AKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLY 340
K + + ++ ++ L L+ + I D + ++ E++ + ++L L
Sbjct: 505 QK-IRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKY-ERLVNAILDFLPKIEEN-LI 560
Query: 341 HFKKWMNPKFSTTTRKVALTWPNS 364
K T ++AL +
Sbjct: 561 CSK-------YTDLLRIALMAEDE 577
Score = 34.8 bits (79), Expect = 0.068
Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 32/167 (19%)
Query: 8 DLQFSTLSSSSFQA----KVVDHNN--RIVPFGTPGELLIRGH-CNMLGY--WEDEQKTK 58
+ + +VDH N + + + + +G+ E +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 59 ETIGPD-----RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLR 113
T+ R+L +K +A + QQ + FY
Sbjct: 490 MTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLK-----FYK---PYICDN 537
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPN---VLEAY 154
+ Y ++V I D + + EN+ + + ++ + EA+
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 29.1 bits (64), Expect = 4.3
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 41/166 (24%)
Query: 308 VQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDS 367
Q + D+ F++ + + K + S + D+
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----------LSKEEIDHIIMSK---DA 60
Query: 368 EARIYHYKKYLREEENITVPDSAGRSIFEKDQFV---LREDGYGQVVGRIKDMIIRGGEN 424
+ L ++ V +FV LR + Y ++ IK E
Sbjct: 61 VSGTLRLFWTLLSKQEEMV-----------QKFVEEVLRIN-YKFLMSPIKT------EQ 102
Query: 425 IYPKEI-EEFIQTHP---NVLEAYA-YGVPDERMGEEVGISIKLKE 465
P + +I+ N + +A Y V + + + L E
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLE 146
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 41.9 bits (99), Expect = 3e-05
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 413 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD 472
DMII G NI+P +IE + + Y + +E+ + ++L + +
Sbjct: 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYG 61
Query: 473 DIRTFCK 479
++ +
Sbjct: 62 RLQALTR 68
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 123 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
DMII G NI+P +IE + + Y + +E+ + ++L +
Sbjct: 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF 56
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 42.7 bits (101), Expect = 2e-04
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 408 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 467
++ GR DM+I G N++P +IEE + + Y + E + + ++++
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385
Query: 468 KLNADDIRTFCK 479
+ I+ +
Sbjct: 386 APDTAAIQVAKQ 397
Score = 42.3 bits (100), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 118 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
++ GR DM+I G N++P +IEE + + Y
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHY 362
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 42.2 bits (100), Expect = 4e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ + + L
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565
Query: 464 KENAKLNADDIRTFCKGKVSK 484
+ + ++ + V K
Sbjct: 566 NHGEE-PSPELYAEVRNWVRK 585
Score = 41.4 bits (98), Expect = 5e-04
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 41.5 bits (98), Expect = 4e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
+ GR DM I G NI+P ++E+ + P + Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360
Score = 41.5 bits (98), Expect = 4e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
+ GR DM I G NI+P ++E+ + P + Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 41.0 bits (97), Expect = 7e-04
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
+DGY ++GR+ D++ G + EIE I P V E G D+ G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568
Score = 41.0 bits (97), Expect = 7e-04
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
+DGY ++GR+ D++ G + EIE I P V E G D+ G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 40.8 bits (96), Expect = 8e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
+ GR DM+I G N++P +IEE + P + +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364
Score = 40.8 bits (96), Expect = 8e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
+ GR DM+I G N++P +IEE + P + +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 32.1 bits (74), Expect = 0.39
Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 64/149 (42%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD---RWLRTG---RYK 73
++D + + + G GE+++ G GY + +KT E TG
Sbjct: 332 PTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSL- 390
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG---YGQVVGRIKDMI-I 129
ED Y GR+ I
Sbjct: 391 ---------------------------------------TEDNILLY---GGRLDFQIKY 408
Query: 130 RG-----GENIYPKEIEEFIQTHPNVLEA 153
G ++ + + P V A
Sbjct: 409 AGYRIELE------DVSQQLNQSPMVASA 431
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 32.2 bits (74), Expect = 0.49
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
+++ +++ PFG GEL I G GY TKE
Sbjct: 790 ILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKE 826
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 32.1 bits (74), Expect = 0.50
Identities = 32/171 (18%), Positives = 50/171 (29%), Gaps = 81/171 (47%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD------RWLRTG---RYK 73
+VD N ++ G GEL I G GYW+ + T + + + +TG R+
Sbjct: 359 IVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW- 417
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG---YGQVVGRIKDMI-I 129
DG Y +GRI + + I
Sbjct: 418 ---------------------------------------LSDGNIEY---LGRIDNQVKI 435
Query: 130 RG-----GENIYPKEIEEFIQTHPNVLEA--------------YAYGVPDE 161
RG E+E + H + E AY V ++
Sbjct: 436 RGHRVELE------EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK 480
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 31.3 bits (72), Expect = 0.70
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 23 VVDHNNRIVPFGTPGELLIRGHCNMLGYW 51
++ + I P G GE++I G +GY
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVGYL 360
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 30.5 bits (70), Expect = 1.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 23 VVDHNNRIVPFGTPGELLIRG 43
++D + +P G GE++I G
Sbjct: 331 IMDEEGQPLPEGEKGEIVIAG 351
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 30.7 bits (70), Expect = 1.3
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 42/107 (39%)
Query: 403 REDG---YGQVVGRI----KDMIIRG-----GENIYPKEIEEFIQTHPNVLEA------- 443
D + +GR K +RG GE + E I++
Sbjct: 415 DADSSILF---LGRKDEQVK---VRGQRLELGE------VSEVIRSLSPTDIDVVTLLLN 462
Query: 444 ---------YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 481
++ G + EN K + +R C+
Sbjct: 463 HPGTSKQFLVSFVASSG--AAVRGELRWINENYKEINNSLRQACEQT 507
Score = 29.1 bits (66), Expect = 3.3
Identities = 25/145 (17%), Positives = 34/145 (23%), Gaps = 68/145 (46%)
Query: 25 DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWL-RTG---RYKKTSFLYS 80
+N V G GEL+I G GY R + RTG R
Sbjct: 363 PGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRM-------- 414
Query: 81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG---YGQVVGRI----KDMIIRG-- 131
D + +GR K +RG
Sbjct: 415 --------------------------------DADSSILF---LGRKDEQVK---VRGQR 436
Query: 132 ---GENIYPKEIEEFIQTHPNVLEA 153
G E+ E I++
Sbjct: 437 LELG------EVSEVIRSLSPTDID 455
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 30.1 bits (67), Expect = 1.8
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 19 FQAKVVD-HNNRIVPFGTPGELLI---RGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
VVD + V +G G +++ E + + G +
Sbjct: 295 ITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLP-GVSGFAGDR 349
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel,
antioxidant, copper, cytoplasm, metal- binding,
oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A
Length = 154
Score = 28.9 bits (65), Expect = 1.9
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 383 NITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE 442
NI + AG + + G ++GR +++ + E +T N
Sbjct: 85 NIEAIEDAGVTKVSIQDSQISLHGPNSIIGR--TLVVHADPDDLGLGGNELSKTTGNAGG 142
Query: 443 AYAYGV 448
A GV
Sbjct: 143 RIACGV 148
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase,
hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp}
PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Length = 537
Score = 29.7 bits (67), Expect = 2.1
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 194 FETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSA 253
E + M P Y++ + P D + L +S F A
Sbjct: 196 EEIAWLLTMQDPATGGVYHKVTTPSFPPLDTR-----PEDDDAPLVLSPISYAATATFCA 250
Query: 254 EVEAHYNQKSDIDWEYADKC-EKSMQGWA 281
+ D + C + + + +A
Sbjct: 251 AMAHAALVYRPFDPALSSCCADAARRAYA 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 29.0 bits (66), Expect = 2.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 137 PKEIEEFIQTHPNVLEAY 154
+E + + + P V+E Y
Sbjct: 237 GEEEIKNVLSDPKVVEIY 254
Score = 29.0 bits (66), Expect = 2.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 427 PKEIEEFIQTHPNVLEAY 444
+E + + + P V+E Y
Sbjct: 237 GEEEIKNVLSDPKVVEIY 254
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase,
family 9, cellobiohydrolase; 2.1A {Clostridium
thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Length = 609
Score = 28.0 bits (62), Expect = 7.6
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 13/130 (10%)
Query: 161 ERMGEEVGISIKLKENAKLNAYEDKSISSDY-HEFETMYDSIM-AHPNRTTPYYQWWSYD 218
ER + + +N E + D E +
Sbjct: 199 ERAKIRGLDNWGPYRDGGMNIPEQNNGYPDILDEARWEIEFFKKMQVTEKEDPSIAGMVH 258
Query: 219 PNQSYVTHDNGF------PVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADK 272
HD + P + + Y +S+ NF+A + D D +A
Sbjct: 259 HK----IHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARLWKDYDPTFAAD 314
Query: 273 C-EKSMQGWA 281
C EK+ W
Sbjct: 315 CLEKAEIAWQ 324
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 27.9 bits (61), Expect = 9.1
Identities = 32/284 (11%), Positives = 69/284 (24%), Gaps = 40/284 (14%)
Query: 125 KDMIIRGGENIYPKEIEEFI----QTHPNVLEAYAYGVPDERM----------------- 163
++ + + + + Q VL+A YGV R
Sbjct: 671 RNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFP 730
Query: 164 -----GEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYD 218
+ + + K +SS T+ D++ P
Sbjct: 731 EPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISY 790
Query: 219 PN------QSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADK 272
Q + P+ + MS+L+ A + D+
Sbjct: 791 NGEPQSWFQRQLRGAQYQPILRDH--ICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRL 848
Query: 273 CEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLI 332
+ +M + + + D +F + + +
Sbjct: 849 SDGTMA-RKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGN 907
Query: 333 TPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKK 376
+ + + FSTT P M + R+ H ++
Sbjct: 908 RHNHWAGLYGRLEWDGFFSTTVTN-----PEPMGKQGRVLHPEQ 946
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,789,289
Number of extensions: 486610
Number of successful extensions: 1421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 117
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)