RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5016
(485 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 121 bits (305), Expect = 2e-30
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 38/166 (22%)
Query: 19 FQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
F+AKVVD + + GEL +RG M GY + + T I D WL +G
Sbjct: 366 FEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG------- 418
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D ED + +V R+K +I G + P
Sbjct: 419 ------------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 448
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
E+E + HPN+ +A G+PD+ GE + L+ + E
Sbjct: 449 AELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 494
Score = 96.9 bits (240), Expect = 4e-22
Identities = 25/109 (22%), Positives = 45/109 (41%)
Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
Y+ E + D ED + +V R+K +I G + P E+E +
Sbjct: 398 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 457
Query: 437 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
HPN+ +A G+PD+ GE + L+ + +I + +V+
Sbjct: 458 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTA 506
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 116 bits (292), Expect = 1e-28
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%)
Query: 20 QAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
+ +V D R VP GE+ ++G GY+ +E+ T+ + PD + RTG
Sbjct: 358 RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG------- 410
Query: 78 LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
D V E+GY ++ R+KD+I GGE I
Sbjct: 411 ------------------------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISS 440
Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
++E + HP V EA +P + E + +
Sbjct: 441 VDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE 484
Score = 90.3 bits (223), Expect = 6e-20
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 411 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 470
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
+ + + K +K+
Sbjct: 471 LAVVVPRGEKPTPEELNEHLLKAGFAKW 498
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 116 bits (292), Expect = 2e-28
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 41/166 (24%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCN--MLGYWEDEQKTKETI--GPDRWLRTGRYKKT 75
Q +VD+ T G L+I + D ++ ++T +G
Sbjct: 441 QPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG----- 495
Query: 76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
D EDGY + GR+ D++ G +
Sbjct: 496 --------------------------------DGARRDEDGYYWITGRVDDVLNVSGHRL 523
Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
EIE + HP + EA G+P G+ + + L + +
Sbjct: 524 GTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 569
Score = 92.8 bits (230), Expect = 1e-20
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 496 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555
Query: 458 GISIKLKENAKLNAD---DIRTFCKGKVSKF 485
+ L + + + ++R + + ++
Sbjct: 556 YAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 586
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 108 bits (269), Expect = 8e-26
Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 31/163 (19%)
Query: 19 FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
Q +VD N ++ G GEL I G GYW+ + T + + ++ + KT
Sbjct: 339 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD- 397
Query: 79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
Q DG + +GRI + + G + +
Sbjct: 398 ------------------------------QARWLSDGNIEYLGRIDNQVKIRGHRVELE 427
Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
E+E + H + E D + + +++ L
Sbjct: 428 EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQ 470
Score = 90.0 bits (222), Expect = 7e-20
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
DQ DG + +GRI + + G + +E+E + H + E D + +
Sbjct: 397 DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 456
Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
+++ + + +R F ++ +
Sbjct: 457 CAYFVSEKH--IPLEQLRQFSSEELPTY 482
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 100 bits (250), Expect = 2e-23
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 37/158 (23%)
Query: 20 QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
+++V D ++R V G G LL RG + GY++ E+ + D + RTG
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI------- 414
Query: 80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
L DGY V GR KD I RGGE + +E
Sbjct: 415 ------------------------------VRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
+E + HP V +A +PD+ +GE + I ++ A
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482
Score = 90.1 bits (222), Expect = 7e-20
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
Y + EE+ + D L DGY V GR KD I RGGE + +E+E +
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451
Query: 437 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482
HP V +A +PD+ +GE + I ++ A A +++ F + +
Sbjct: 452 HPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAELKAFLRERG 496
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 101 bits (251), Expect = 3e-23
Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 50/199 (25%)
Query: 20 QAKVVDHNNR--IVPFGTPGELLIRGHCN--MLGYWEDEQKTKETI--GPDRWLRTGRYK 73
A V+D N + G L ++ W++ + +T + TG
Sbjct: 429 DAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG--- 485
Query: 74 KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
D +DGY ++GR+ D++ G
Sbjct: 486 ----------------------------------DGAAKDKDGYIWILGRVDDVVNVSGH 511
Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHE 193
+ EIE I P V E G D+ G+ V + LK + + D E
Sbjct: 512 RLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD-------E 564
Query: 194 FETMYDSIMAHPNRTTPYY 212
+ + ++ + +
Sbjct: 565 LQDIKKHLVFTVRKDIGPF 583
Score = 85.3 bits (210), Expect = 3e-18
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 11/128 (8%)
Query: 369 ARIYHYKKYLREEENITVPDSAGRSIFE-KDQFVLREDGYGQVVGRIKDMIIRGGENIYP 427
+ + + + + + D +DGY ++GR+ D++ G +
Sbjct: 456 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 515
Query: 428 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----------DDIRTF 477
EIE I P V E G D+ G+ V + LK + + +
Sbjct: 516 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFT 575
Query: 478 CKGKVSKF 485
+ + F
Sbjct: 576 VRKDIGPF 583
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 97.8 bits (242), Expect = 2e-22
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 458 GISIKLKENAKLNADDIRTFCKGK 481
+ + L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCRSS 468
Score = 91.6 bits (226), Expect = 2e-20
Identities = 47/182 (25%), Positives = 67/182 (36%), Gaps = 39/182 (21%)
Query: 1 MWDMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHC-NMLGYWEDEQKTKE 59
M S ++ + IV G GEL++ +GY Q T E
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 60 TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQ 119
+ D W RT SD V +G +
Sbjct: 375 KL-QDGWYRT-------------------------------------SDVAVWTPEGTVR 396
Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V + + L
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL 456
Query: 180 NA 181
+A
Sbjct: 457 SA 458
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 26.0 bits (57), Expect = 2.9
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 428 KEIEEFIQTHPNVLEAYAYGV-PDERMGEEVGISIKLKE-----NAKLNADDIRTFCKGK 481
KE E F + +V + P R +EV + + E A L+ ++ F G+
Sbjct: 9 KEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGR 68
Query: 482 VSK 484
K
Sbjct: 69 AVK 71
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 27.7 bits (60), Expect = 4.0
Identities = 33/265 (12%), Positives = 65/265 (24%), Gaps = 17/265 (6%)
Query: 198 YDSIMAHPNRT--TPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEV 255
D + AH + TP Y ++ P + + +L H F E
Sbjct: 131 PDMVHAHDWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEG 190
Query: 256 EAHYNQKSDI--DWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRID 313
+YN S + + A +A+ + + G + + L + N ID
Sbjct: 191 IEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGM-GLEGVIGSRAHVLHGIVNGID 249
Query: 314 DVEYEFQEKMFKDVKNYLITPALKGL---YHFKKWMNPKFSTTTRKVALTWPNSMDSEAR 370
+ + L + + + V +
Sbjct: 250 ADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLM 309
Query: 371 IYHYKKYLREEENITV-----PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENI 425
+ + + V G + + R + ++ G + I
Sbjct: 310 AEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAI 369
Query: 426 YPKEIEEFIQTHPNV-LEAYAYGVP 449
E L A YG
Sbjct: 370 IIPSRFE---PCGLTQLYALRYGCI 391
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 201
Score = 26.7 bits (58), Expect = 5.0
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 173 LKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTT 209
L EN + K D EF + D ++ +P +
Sbjct: 85 LIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 121
>d1dqia_ b.1.13.1 (A:) Superoxide reductase (SOR) {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 124
Score = 26.2 bits (57), Expect = 5.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 30 IVPFGTPGELLIRGHCNMLGYWEDEQKTK 58
++ G+L +CN+ G WE+E +
Sbjct: 96 VLKTKKKGKLYALSYCNIHGLWENEVTLE 124
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 26.5 bits (58), Expect = 6.4
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 364 SMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGE 423
++D + KY +TV D+ G F K+ G Q I +II GG
Sbjct: 71 TIDIALWKFETPKY-----QVTVIDAPGHRDFIKN----MITGTSQADCAI--LIIAGGV 119
Query: 424 NIYPKEIEEFIQTHPNVLEAYAYGVP 449
+ I + QT + L A+ GV
Sbjct: 120 GEFEAGISKDGQTREHALLAFTLGVR 145
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.5 bits (58), Expect = 8.5
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 294 PVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYL 331
P ++ + L+ +Q+ + +VE EFQ +MF+ +L
Sbjct: 20 PKNVKEK-LLSLKTLQSELFEVEKEFQVEMFELENKFL 56
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 25.5 bits (55), Expect = 9.3
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHE 193
EF Q HP L Y + + E + E A L + D+ E
Sbjct: 2 EFNQFHPTAL--YHPQARNFLLTEAL-----RGEGAYLKRPDGTRFMPDFDE 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,947,136
Number of extensions: 96995
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 41
Length of query: 485
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,185,626
Effective search space: 469507896
Effective search space used: 469507896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)