BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5020
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
W IQ +TF W NEHLKSV + +L DL+DG +L AL+E+L QKR + + ++PT +
Sbjct: 14 WKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 73
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 74 QMQLENVSVALEFLDRESIKLVSID 98
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L QKR + + ++PT +
Sbjct: 17 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 76
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 77 QMQLENVSVALEFLDRESIKLVSID 101
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L QKR + + ++PT +
Sbjct: 24 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRXYRKYHQRPTFR 83
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 84 QXQLENVSVALEFLDRESIKLVSID 108
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L QKR + + ++PT +
Sbjct: 17 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 76
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 77 QMQLENVSVALEFLDRESIKLVSID 101
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L QKR + + ++PT +
Sbjct: 17 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 76
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 77 QMQLENVSVALEFLDRESIKLVSID 101
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L ++K+ + ++PT +
Sbjct: 41 WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 100
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 101 QMQLENVSVALEFLDRESIKLVSID 125
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L ++K+ + ++PT +
Sbjct: 44 WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 103
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 104 QMQLENVSVALEFLDRESIKLVSID 128
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L ++K+ + ++PT +
Sbjct: 44 WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 103
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
LENV+ AL ++ + IKLV+ID
Sbjct: 104 QMQLENVSVALEFLDRESIKLVSID 128
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
W Q TF W N HL+ G +E++ +D DG KL L+E++ +L R H
Sbjct: 5 WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVH 64
Query: 95 QFLENVTCALNAINEDGIKLVNI 117
+ + NV AL+ I G+KLV+I
Sbjct: 65 K-ISNVNKALDFIASKGVKLVSI 86
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPT 91
E W Q TF W N HL+ G +E++ +D DG KL L+E++ +L R
Sbjct: 6 EFAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKM 65
Query: 92 NQHQFLENVTCALNAINEDGIKLVNI 117
H+ + NV AL+ I G+KLV+I
Sbjct: 66 RVHK-INNVNKALDFIASKGVKLVSI 90
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLE 98
Q TF W N HL+ G +E++ +D DG KL L+E++ +L R H+ +
Sbjct: 8 QRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK-IS 66
Query: 99 NVTCALNAINEDGIKLVNI 117
NV AL+ I G+KLV+I
Sbjct: 67 NVNKALDFIASKGVKLVSI 85
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 38 IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQF- 96
+Q TF WVN+HL H+ DL +DL DG L +L+E+L L + + +F
Sbjct: 73 VQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLP----REKGRMRFH 128
Query: 97 -LENVTCALNAINEDGIKLVNI 117
L+NV AL+ + +KLVNI
Sbjct: 129 KLQNVQIALDYLRHRQVKLVNI 150
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
W Q TF W N HL+ G +E++ +D +G KL L+E++ +L R +
Sbjct: 2 WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP---RPDKGKM 58
Query: 95 QF--LENVTCALNAINEDGIKLVNI 117
+F + NV AL+ I G+KLV+I
Sbjct: 59 RFHKIANVNKALDFIASKGVKLVSI 83
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
W Q TF W N HL+ G +E++ +D +G KL L+E++ +L R +
Sbjct: 20 WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP---RPDKGKM 76
Query: 95 QF--LENVTCALNAINEDGIKLVNI 117
+F + NV AL+ I G+KLV+I
Sbjct: 77 RFHKIANVNKALDFIASKGVKLVSI 101
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
W Q TF W N HL+ G +E++ +D +G KL L+E++ +L R +
Sbjct: 24 WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP---RPDKGKM 80
Query: 95 QF--LENVTCALNAINEDGIKLVNI 117
+F + NV AL+ I G+KLV+I
Sbjct: 81 RFHKIANVNKALDFIASKGVKLVSI 105
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 37 DIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQ 95
D+Q TF WVN G H+E+L DL DG +L L+E L +KL K + +
Sbjct: 15 DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP--KEKGSTRVH 72
Query: 96 FLENVTCALNAINEDGIKLVNI 117
L NV AL + + + LVNI
Sbjct: 73 ALNNVNKALRVLQNNNVDLVNI 94
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 38 IQTHTFKNWVNEHL-----KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTN 92
+Q TF WVN+HL H+ DL +DL DG L +L+E+L L +
Sbjct: 12 VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP----REKG 67
Query: 93 QHQF--LENVTCALNAINEDGIKLVNI 117
+ +F L+NV AL+ + +KLVNI
Sbjct: 68 RMRFHKLQNVQIALDYLRHRQVKLVNI 94
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 38 IQTHTFKNWVNEHL-----KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTN 92
+Q TF WVN+HL H+ DL +DL DG L +L+E+L L K
Sbjct: 15 VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRM 72
Query: 93 QHQFLENVTCALNAINEDGIKLVNI 117
+ L+NV AL+ + +KLVNI
Sbjct: 73 RFHKLQNVQIALDYLRHRQVKLVNI 97
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 28 IKGHEDIWVDIQTHTFKNWVNEHLKSVGLH--VEDLAKDLADGTKLCALVEILQKRKLKF 85
I G ED Q + +W N +L G + DL +D+ DG L +++++ K++
Sbjct: 13 IHGLED-----QKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIED 67
Query: 86 WIRKPTNQHQFLENVTCALNAINEDGIKL 114
P N+ Q +EN+ LN + GI +
Sbjct: 68 INGCPKNRSQMIENIDACLNFLAAKGINI 96
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 37 DIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQ 95
D+Q TF W+N G + D DL DG KL L+E L L R T H
Sbjct: 1 DVQKKTFTKWINARFSKSGKPPINDXFTDLKDGRKLLDLLEGLTGTSLPK-ERGSTRVHA 59
Query: 96 FLENVTCALNAINEDGIKLVNI 117
L NV L ++++ ++LVNI
Sbjct: 60 -LNNVNRVLQVLHQNNVELVNI 80
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 31/122 (25%)
Query: 19 EGHAAKG----MQIKGHEDIWVDIQTHTFKNWVNE---------HLKSVGLHVEDLAKDL 65
EG A G + +G + + + + + F NW+N+ H+ + + +DL K +
Sbjct: 1 EGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAV 60
Query: 66 ADGTKLCALVEI----------LQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLV 115
DG LC ++ + + K+KL +I + EN+ ALN+ + G +V
Sbjct: 61 GDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQ--------ENLNLALNSASAIGCHVV 112
Query: 116 NI 117
NI
Sbjct: 113 NI 114
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 46 WVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLK 84
W E G+HV DL+ ADG LCALV LQ L+
Sbjct: 15 WCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLE 54
>pdb|4EDL|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDN|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|G Chain G, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|H Chain H, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|I Chain I, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|J Chain J, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
Length = 133
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 46 WVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR--KLKFWIRKPTNQHQFLENVTCA 103
+VN+HL + L V +L ADG L L+ +L+ L + P + Q + NV+ A
Sbjct: 32 FVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNVSFA 91
Query: 104 LNAINEDGIK 113
+ + G+K
Sbjct: 92 FELMLDGGLK 101
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 46 WVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLK 84
W E G+HV DL+ ADG LCALV LQ L+
Sbjct: 21 WCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLE 60
>pdb|3KMW|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 129
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR--KLKFWIRKPTNQ 93
+++ T +VN+HL + L V +L ADG L L+ +L+ L + P +
Sbjct: 18 LNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSF 77
Query: 94 HQFLENVTCALNAINEDGIK 113
Q + NV+ A + + G++
Sbjct: 78 EQKVLNVSFAFELMQDGGLE 97
>pdb|2VZC|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin
pdb|2VZC|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin
pdb|2VZD|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin In Complex With Paxillin Ld1
Motif
pdb|2VZD|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin In Complex With Paxillin Ld1
Motif
pdb|2VZG|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha-Parvin In Complex With Paxillin Ld2
Motif
pdb|2VZI|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha-Parvin In Complex With Paxillin Ld4
Motif
Length = 131
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR--KLKFWIRKPTNQ 93
+++ T +VN+HL + L V +L ADG L L+ +L+ L + P +
Sbjct: 20 LNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSF 79
Query: 94 HQFLENVTCALNAINEDGIK 113
Q + NV+ A + + G++
Sbjct: 80 EQKVLNVSFAFELMQDGGLE 99
>pdb|2K2R|A Chain A, The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 COMPLEX
Length = 129
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR--KLKFWIRKPTNQ 93
+++ T +VN+HL + L V +L ADG L L+ +L+ L + P +
Sbjct: 18 LNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSF 77
Query: 94 HQFLENVTCALNAINEDGIK 113
Q + NV+ A + + G++
Sbjct: 78 EQKVLNVSFAFELMQDGGLE 97
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 54 VGLHV-EDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGI 112
GL + D K L DGT LC L+ LQ + R N HQ LEN++ + A+ G+
Sbjct: 30 TGLSIGPDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQ-LENLSNFIKAMVSYGM 88
Query: 113 KLVNI 117
V++
Sbjct: 89 NPVDL 93
>pdb|1R9L|A Chain A, Structure Analysis Of Prox In Complex With Glycine Betaine
pdb|1R9Q|A Chain A, Structure Analysis Of Prox In Complex With Proline Betaine
Length = 309
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 19 EGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKS 53
+G A++G I+GH D W+ F WVNE L +
Sbjct: 274 DGKASEG-DIQGHVDGWIKAHQQQFDGWVNEALAA 307
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 65 LADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK 113
L DG LC + LQ +K N HQ LEN+ + AI + G+K
Sbjct: 42 LKDGIILCEFINKLQPGSVKKINESTQNWHQ-LENIGNFIKAITKYGVK 89
>pdb|2IVY|A Chain A, Crystal Structure Of Hypothetical Protein Sso1404 From
Sulfolobus Solfataricus P2
Length = 101
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 34 IWVDIQTHTFKNWVNEHLKSVGL-------HVEDL----AKDLADGTKLCALVEILQKRK 82
I+ DI +N V E LK GL + DL KD+ G K+ + LQ+ +
Sbjct: 7 IFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKLQEDE 66
Query: 83 LKFWIRKPTNQHQFLENVTCALNA 106
F + P ++QF E + +
Sbjct: 67 RFFILIVPITENQFRERIVIGYSG 90
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCAL 74
+ DI TF +W + LK G + + L ++LADG K +L
Sbjct: 120 YYDIDAQTFADWGVDLLKFAGCYCDSL-ENLADGYKHMSL 158
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCAL 74
+ DI TF +W + LK G + + L ++LADG K +L
Sbjct: 120 YYDIDAQTFADWGVDLLKFDGCYCDSL-ENLADGYKHMSL 158
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCAL 74
+ DI TF +W + LK G + + L ++LADG K +L
Sbjct: 120 YYDIDAQTFADWGVDLLKFDGCYCDSL-ENLADGYKHMSL 158
>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
Protein
Length = 143
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 57 HVEDLAKDLADGTKLCALVEILQKRKLKFW---IRKPTNQHQFLENVTCALNAINE 109
V DLA+ L DG LC L+ L+ + +R +Q L+N+ L A E
Sbjct: 36 QVFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLKNIRTFLTACCE 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,684,321
Number of Sequences: 62578
Number of extensions: 135299
Number of successful extensions: 324
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 44
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)