Query psy5020
Match_columns 120
No_of_seqs 109 out of 662
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:46:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.9 5.5E-26 1.2E-30 207.7 6.8 93 26-119 36-128 (2473)
2 cd00014 CH Calponin homology d 99.7 2.1E-16 4.5E-21 106.3 7.7 80 39-118 2-82 (107)
3 smart00033 CH Calponin homolog 99.7 2.7E-16 5.8E-21 104.8 7.7 80 40-119 2-83 (103)
4 COG5069 SAC6 Ca2+-binding acti 99.5 7.6E-15 1.6E-19 123.1 2.8 88 32-119 3-91 (612)
5 PF00307 CH: Calponin homology 99.5 1.3E-13 2.8E-18 92.6 8.4 76 40-115 1-81 (108)
6 KOG0035|consensus 99.4 6.4E-14 1.4E-18 124.1 -0.9 88 31-119 20-108 (890)
7 KOG0046|consensus 99.3 5.8E-12 1.3E-16 106.8 7.7 84 34-119 384-472 (627)
8 KOG0046|consensus 99.0 1.5E-10 3.3E-15 98.2 3.3 85 35-119 116-212 (627)
9 KOG2046|consensus 99.0 1.3E-09 2.8E-14 82.5 7.3 84 31-116 18-102 (193)
10 KOG3631|consensus 99.0 1.9E-09 4.2E-14 85.8 7.3 83 31-113 250-334 (365)
11 COG5069 SAC6 Ca2+-binding acti 98.3 8.7E-07 1.9E-11 75.2 5.9 89 29-120 371-467 (612)
12 COG5199 SCP1 Calponin [Cytoske 98.3 1.2E-06 2.7E-11 64.4 5.8 76 36-113 11-86 (178)
13 PF11971 CAMSAP_CH: CAMSAP CH 97.9 9.1E-06 2E-10 54.3 3.4 68 46-113 1-72 (85)
14 KOG0532|consensus 96.9 0.0031 6.7E-08 55.3 7.0 88 24-113 561-654 (722)
15 KOG0516|consensus 96.9 0.00025 5.4E-09 64.9 0.4 80 36-116 72-154 (1047)
16 PF06294 DUF1042: Domain of Un 96.8 0.0023 5.1E-08 47.1 4.7 68 44-114 2-72 (158)
17 KOG2996|consensus 96.7 0.0017 3.6E-08 56.9 3.9 54 56-109 28-84 (865)
18 KOG0518|consensus 96.4 4.9E-05 1.1E-09 69.2 -7.4 89 30-119 18-106 (1113)
19 KOG3631|consensus 96.3 0.014 3.1E-07 47.1 6.5 53 31-84 84-136 (365)
20 COG5261 IQG1 Protein involved 94.8 0.085 1.8E-06 48.1 6.4 101 7-113 11-118 (1054)
21 KOG2128|consensus 94.1 0.097 2.1E-06 49.6 5.3 71 42-113 46-117 (1401)
22 PF05622 HOOK: HOOK protein; 93.1 0.17 3.7E-06 44.9 5.1 68 39-109 8-81 (713)
23 PF04136 Sec34: Sec34-like fam 54.8 30 0.00064 25.2 4.6 79 29-109 31-113 (157)
24 PF03975 CheD: CheD chemotacti 49.5 16 0.00034 25.1 2.3 21 96-116 62-82 (114)
25 PF06395 CDC24: CDC24 Calponin 49.0 32 0.00069 23.1 3.6 26 57-82 2-27 (89)
26 smart00857 Resolvase Resolvase 45.6 62 0.0013 22.1 4.9 80 35-118 16-102 (148)
27 KOG0668|consensus 42.0 10 0.00022 30.7 0.5 27 87-113 107-154 (338)
28 cd00338 Ser_Recombinase Serine 40.9 79 0.0017 21.1 4.8 78 36-118 16-102 (137)
29 PRK13488 chemoreceptor glutami 39.5 29 0.00062 25.5 2.5 19 98-116 107-125 (157)
30 COG2452 Predicted site-specifi 37.9 1.5E+02 0.0032 22.8 6.1 70 38-119 73-150 (193)
31 PRK13495 chemoreceptor glutami 37.5 32 0.0007 25.3 2.5 21 96-116 103-123 (159)
32 PRK13490 chemoreceptor glutami 37.2 32 0.0007 25.3 2.5 20 97-116 111-130 (162)
33 PF09611 Cas_Csy1: CRISPR-asso 35.2 43 0.00093 28.1 3.1 30 31-60 341-370 (378)
34 cd03767 SR_Res_par Serine reco 34.8 97 0.0021 21.7 4.6 76 36-118 14-97 (146)
35 PRK13498 chemoreceptor glutami 34.3 39 0.00084 25.0 2.5 20 97-116 114-133 (167)
36 COG3622 Hfi Hydroxypyruvate is 34.1 1E+02 0.0022 24.7 4.8 58 58-115 76-141 (260)
37 PRK13491 chemoreceptor glutami 33.6 39 0.00085 25.9 2.5 20 97-116 114-133 (199)
38 PRK13493 chemoreceptor glutami 32.7 39 0.00085 26.1 2.4 20 97-116 138-157 (213)
39 PRK13494 chemoreceptor glutami 32.0 45 0.00097 24.7 2.5 21 96-116 112-132 (163)
40 PRK13487 chemoreceptor glutami 31.7 44 0.00095 25.6 2.5 20 97-116 126-145 (201)
41 TIGR02564 cas_Csy1 CRISPR-asso 31.1 54 0.0012 27.7 3.1 28 33-60 340-367 (384)
42 PRK13497 chemoreceptor glutami 30.9 47 0.001 25.1 2.5 20 97-116 111-130 (184)
43 COG1871 CheD Chemotaxis protei 28.2 56 0.0012 24.4 2.4 19 98-116 114-132 (164)
44 PRK13489 chemoreceptor glutami 27.4 57 0.0012 25.6 2.5 20 97-116 124-143 (233)
45 KOG2544|consensus 26.5 59 0.0013 28.7 2.6 27 94-120 262-289 (711)
46 KOG3000|consensus 25.6 1.5E+02 0.0033 24.1 4.7 69 40-112 17-87 (295)
47 KOG0035|consensus 25.3 50 0.0011 30.8 2.0 71 40-112 144-216 (890)
48 cd08534 SAM_PNT-GABP-alpha Ste 24.7 1E+02 0.0022 20.6 3.0 45 28-75 15-59 (89)
49 KOG0517|consensus 24.3 1.4E+02 0.0031 30.6 4.9 70 40-112 169-240 (2473)
50 PF02844 GARS_N: Phosphoribosy 23.5 66 0.0014 21.9 1.9 24 96-119 47-70 (100)
51 PHA00727 hypothetical protein 22.0 17 0.00038 28.3 -1.3 41 33-74 75-115 (278)
52 TIGR03031 cas_csx12 CRISPR-ass 20.9 98 0.0021 28.1 2.9 56 31-86 268-329 (802)
53 PRK13777 transcriptional regul 20.5 3.7E+02 0.008 20.0 5.8 73 7-82 82-158 (185)
54 cd08536 SAM_PNT-Mae Sterile al 20.3 1.2E+02 0.0027 18.9 2.6 39 34-75 4-42 (66)
55 PF14502 HTH_41: Helix-turn-he 20.2 94 0.002 18.6 1.9 14 98-111 21-34 (48)
No 1
>KOG0517|consensus
Probab=99.92 E-value=5.5e-26 Score=207.68 Aligned_cols=93 Identities=35% Similarity=0.469 Sum_probs=90.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHH
Q psy5020 26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALN 105 (120)
Q Consensus 26 ~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~ 105 (120)
.+||.++++.+.+|+||||+|||+||..+++.|.|||+||+||+.|+.|||+|||+.+|++. +++||+||+|||++||+
T Consensus 36 sRIKaLadERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPt-rGRMRIH~LENvdKaLq 114 (2473)
T KOG0517|consen 36 SRIKALADEREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPT-RGRMRIHCLENVDKALQ 114 (2473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCC-CCceeehhHhhhHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999985 79999999999999999
Q ss_pred HHHhCCCeEeccCC
Q psy5020 106 AINEDGIKLVNIDY 119 (120)
Q Consensus 106 flk~~gi~lvnI~~ 119 (120)
||++..|+|.|||+
T Consensus 115 FLkeqkVhLEniGs 128 (2473)
T KOG0517|consen 115 FLKEQKVHLENIGS 128 (2473)
T ss_pred HHHhcccccccCCc
Confidence 99999999999997
No 2
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.67 E-value=2.1e-16 Score=106.29 Aligned_cols=80 Identities=30% Similarity=0.505 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeEecc
Q psy5020 39 QTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117 (120)
Q Consensus 39 Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI 117 (120)
|++++++|||.++..... .++|+.++|+||+.||+|++.+++..++....+|.+++++++|++.+|+++++.||...++
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~ 81 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNF 81 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceecc
Confidence 678999999999988876 7999999999999999999999999987755458899999999999999999999987654
Q ss_pred C
Q psy5020 118 D 118 (120)
Q Consensus 118 ~ 118 (120)
.
T Consensus 82 ~ 82 (107)
T cd00014 82 D 82 (107)
T ss_pred C
Confidence 3
No 3
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.67 E-value=2.7e-16 Score=104.77 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhcccC-CcccchhhhhhhHHHHHHHHHHHcCccccc-ccCCCCcHHHHHhhHHHHHHHHHhCCCeEecc
Q psy5020 40 THTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKF-WIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~-~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~-~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI 117 (120)
++++++|+|.++.... .+++|+.++|+||+.||+|++.+.+..++. ....|++++++++|++.|++++++.|+..+.+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~ 81 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF 81 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence 5789999999998874 789999999999999999999999999876 33358889999999999999999999877777
Q ss_pred CC
Q psy5020 118 DY 119 (120)
Q Consensus 118 ~~ 119 (120)
.+
T Consensus 82 ~~ 83 (103)
T smart00033 82 EP 83 (103)
T ss_pred CH
Confidence 54
No 4
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.50 E-value=7.6e-15 Score=123.14 Aligned_cols=88 Identities=39% Similarity=0.593 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhC
Q psy5020 32 EDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINED 110 (120)
Q Consensus 32 ~~~w~~~Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~ 110 (120)
+.+|+.+|+++|+.|.|..|...+. .+.||..|++||+.|++||+++..+....|+..|.+|+|.++|++.+|+|.+..
T Consensus 3 a~kwq~vq~ktftkw~nekL~s~~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~k 82 (612)
T COG5069 3 AKKWQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGK 82 (612)
T ss_pred hHHHHHHhhccchHHHhHHHhhcccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccC
Confidence 5689999999999999999987664 799999999999999999999999888899999999999999999999999999
Q ss_pred CCeEeccCC
Q psy5020 111 GIKLVNIDY 119 (120)
Q Consensus 111 gi~lvnI~~ 119 (120)
|+++.||+|
T Consensus 83 g~~l~Nigp 91 (612)
T COG5069 83 GVKLFNIGP 91 (612)
T ss_pred CceeeeeCc
Confidence 999999997
No 5
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.50 E-value=1.3e-13 Score=92.57 Aligned_cols=76 Identities=30% Similarity=0.524 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhccc--CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCC--CcHHHHHhhHHHHHHHHHh-CCCeE
Q psy5020 40 THTFKNWVNEHLKSV--GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKP--TNQHQFLENVTCALNAINE-DGIKL 114 (120)
Q Consensus 40 ~ktft~WiN~~L~~~--~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p--~~r~qkieNv~~aL~flk~-~gi~l 114 (120)
++.+.+|||+++... +.+|.|+.+||+||+.||.|++.+.|..++....+| ++.+++++|++.|++++++ .|+..
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 467999999999887 568999999999999999999999999875322222 3899999999999999999 88875
Q ss_pred e
Q psy5020 115 V 115 (120)
Q Consensus 115 v 115 (120)
.
T Consensus 81 ~ 81 (108)
T PF00307_consen 81 L 81 (108)
T ss_dssp T
T ss_pred C
Confidence 4
No 6
>KOG0035|consensus
Probab=99.36 E-value=6.4e-14 Score=124.09 Aligned_cols=88 Identities=32% Similarity=0.520 Sum_probs=83.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhc-ccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~-~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
+++.|+++|.+||+.|+|++|. +.+-.|.+++.|++||+.|+.|++.++|+.++++. ++++|+|++||++.+|.|.+.
T Consensus 20 ~~~~~e~~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~-~~~~r~hk~En~~~~l~~~~s 98 (890)
T KOG0035|consen 20 LTPAWEKVQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPT-RGKMRVHKLENVNKALVFIES 98 (890)
T ss_pred cCccHHHHhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCC-CCccchhhhccccceEEEecc
Confidence 8899999999999999999998 66678999999999999999999999999999876 469999999999999999999
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.|+++++|++
T Consensus 99 k~v~~~~iga 108 (890)
T KOG0035|consen 99 KGVKLVSIGA 108 (890)
T ss_pred ccccccccch
Confidence 9999999984
No 7
>KOG0046|consensus
Probab=99.31 E-value=5.8e-12 Score=106.76 Aligned_cols=84 Identities=24% Similarity=0.253 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCC---CCcHHHHHhhHHHHHHHHH
Q psy5020 34 IWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRK---PTNQHQFLENVTCALNAIN 108 (120)
Q Consensus 34 ~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~---p~~r~qkieNv~~aL~flk 108 (120)
..+...+++|+.|+|+ | ....+|+++++|++||.+|.++++++++..+. +.+++ -++.|+++|||++|.+..+
T Consensus 384 ~~~~reer~fr~WmNS-l-gv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk 461 (627)
T KOG0046|consen 384 EEESREERTFRLWMNS-L-GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGK 461 (627)
T ss_pred HhHHHHHHHHHHHHHh-c-CCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHh
Confidence 4456678999999999 5 46679999999999999999999999997653 12222 2567999999999999999
Q ss_pred hCCCeEeccCC
Q psy5020 109 EDGIKLVNIDY 119 (120)
Q Consensus 109 ~~gi~lvnI~~ 119 (120)
+.++.+|||+|
T Consensus 462 ~~~FSLVgi~G 472 (627)
T KOG0046|consen 462 QLKFSLVGIAG 472 (627)
T ss_pred hcceeeecccc
Confidence 99999999986
No 8
>KOG0046|consensus
Probab=99.02 E-value=1.5e-10 Score=98.24 Aligned_cols=85 Identities=27% Similarity=0.332 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhhcccC-----C----cccchhhhhhhHHHHHHHHHHHcCccccc--cc-CCCCcHHHHHhhHHH
Q psy5020 35 WVDIQTHTFKNWVNEHLKSVG-----L----HVEDLAKDLADGTKLCALVEILQKRKLKF--WI-RKPTNQHQFLENVTC 102 (120)
Q Consensus 35 w~~~Q~ktft~WiN~~L~~~~-----~----~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~-~~p~~r~qkieNv~~ 102 (120)
..+.++.+|++|||++|+... + .-.+||+.++||+.||.|++.-.+.++.. ++ +++-+.+++.||.+.
T Consensus 116 i~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l 195 (627)
T KOG0046|consen 116 INEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNL 195 (627)
T ss_pred ecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhh
Confidence 345678899999999998764 1 34679999999999999999999999864 44 567789999999999
Q ss_pred HHHHHHhCCCeEeccCC
Q psy5020 103 ALNAINEDGIKLVNIDY 119 (120)
Q Consensus 103 aL~flk~~gi~lvnI~~ 119 (120)
||.-.+..|+.+||||+
T Consensus 196 ~lnSAkAiGc~VvNIga 212 (627)
T KOG0046|consen 196 ALNSAKAIGCTVVNIGA 212 (627)
T ss_pred HHhhcccccceEEecCc
Confidence 99999999999999985
No 9
>KOG2046|consensus
Probab=99.00 E-value=1.3e-09 Score=82.51 Aligned_cols=84 Identities=21% Similarity=0.314 Sum_probs=68.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
+++.+....++..+.||-..+. .+. .=.|+.+-|+||++||.|+++|.+..+++.+ .|++.|++|||++..+.++++
T Consensus 18 ~~~k~~~~~~~el~~WI~~~~~-~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~-~s~~~f~qmEnIs~Fi~a~~~ 95 (193)
T KOG2046|consen 18 IESKYDDELEKELREWIENVVL-TELPARGDFQDLLKDGVILCKLINKLYPGVVKKIN-ESKMAFVQMENISNFIKAAKK 95 (193)
T ss_pred hhcccCHHHHHHHHHHHHHhhc-cCCCcccCHHHHHcchHHHHHHHHHhCcCcccccc-cccccHHHHHHHHHHHHHHHh
Confidence 5566677778889999999632 333 3578999999999999999999995555544 899999999999999999999
Q ss_pred CCCeEec
Q psy5020 110 DGIKLVN 116 (120)
Q Consensus 110 ~gi~lvn 116 (120)
.|++-+.
T Consensus 96 ygv~~~d 102 (193)
T KOG2046|consen 96 YGVPEVD 102 (193)
T ss_pred cCCChhh
Confidence 9987543
No 10
>KOG3631|consensus
Probab=98.97 E-value=1.9e-09 Score=85.80 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHH
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAIN 108 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk 108 (120)
.+++-....+++..++||.||.+.+..|++|.+.|.|||.|..|+..|.|..+| .|+-.|.+.-+++.||+.|+++|+
T Consensus 250 ~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~ 329 (365)
T KOG3631|consen 250 HAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMK 329 (365)
T ss_pred hCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHH
Confidence 566778889999999999999999999999999999999999999999999876 578899999999999999999999
Q ss_pred hCCCe
Q psy5020 109 EDGIK 113 (120)
Q Consensus 109 ~~gi~ 113 (120)
+.|..
T Consensus 330 D~GL~ 334 (365)
T KOG3631|consen 330 DGGLE 334 (365)
T ss_pred ccCcC
Confidence 98764
No 11
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=98.34 E-value=8.7e-07 Score=75.21 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=70.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHc-Cccc--ccccCCC-----CcHHHHHhhH
Q psy5020 29 KGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQ-KRKL--KFWIRKP-----TNQHQFLENV 100 (120)
Q Consensus 29 ~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Ls-g~~i--~~~~~~p-----~~r~qkieNv 100 (120)
..++.+.+. ..+.||-|.|++ ....+|+|++.|+|||..+.+.++... +-++ +..++.| .+||+.++|+
T Consensus 371 ~e~d~e~ef-ear~~Tf~l~~~--~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~ 447 (612)
T COG5069 371 EEFDAEGEF-EARVFTFWLNSL--DVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENE 447 (612)
T ss_pred CCcchhhHH-HHHHHHHHHHHh--cCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhccc
Confidence 334444333 678999999996 466789999999999999999998776 4343 2333444 4799999999
Q ss_pred HHHHHHHHhCCCeEeccCCC
Q psy5020 101 TCALNAINEDGIKLVNIDYL 120 (120)
Q Consensus 101 ~~aL~flk~~gi~lvnI~~~ 120 (120)
++|.+|....|+.+++|.++
T Consensus 448 nyavdlG~~~gf~~v~ik~l 467 (612)
T COG5069 448 NYAVDLGITEGFSLVGIKGL 467 (612)
T ss_pred chhhhhhhhcCeeeeeechh
Confidence 99999999999999999763
No 12
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=98.33 E-value=1.2e-06 Score=64.44 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK 113 (120)
Q Consensus 36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~ 113 (120)
...|.+..+-||...|.+.--+-.||.+-|+||++||..+...++..+. | +..++.|-+|||++..++|+++.++.
T Consensus 11 ~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~-y-KeSkmpFVQmenIs~Fin~~~k~~vp 86 (178)
T COG5199 11 MDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIK-Y-KESKMPFVQMENISSFINGLKKLRVP 86 (178)
T ss_pred CHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccce-e-cccCCceeeHHHHHHHHHHHHHhCCC
Confidence 4567888999999988765446689999999999999999988887764 3 56899999999999999999998764
No 13
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.95 E-value=9.1e-06 Score=54.29 Aligned_cols=68 Identities=29% Similarity=0.374 Sum_probs=53.1
Q ss_pred HHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc--ccC-CCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 46 WVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF--WIR-KPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 46 WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~~-~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
|++..-.-....|.|+..||+||..||.|+.-+-++.++. +.. .+.+.+.++.|+....+|+.+ .|.+
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~ 72 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFS 72 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCC
Confidence 4444433344689999999999999999999999998864 433 344689999999999999987 3544
No 14
>KOG0532|consensus
Probab=96.92 E-value=0.0031 Score=55.31 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=60.1
Q ss_pred cccccccchhhHHHHHHHH-HHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccC----CCC-cHHHHH
Q psy5020 24 KGMQIKGHEDIWVDIQTHT-FKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIR----KPT-NQHQFL 97 (120)
Q Consensus 24 ~~~~~~~~~~~w~~~Q~kt-ft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~----~p~-~r~qki 97 (120)
+.++-+...+..++....+ .++-|...| ++..++ ||...|.|||+||+|.+.+-+.+++.++- -|+ +-.++-
T Consensus 561 ~tir~r~~~q~~eE~eL~~QLRk~iEtRL-k~sLp~-Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcr 638 (722)
T KOG0532|consen 561 FTIRPRTGIQNREEKELMLQLRKLIETRL-KVSLPE-DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCR 638 (722)
T ss_pred ceecccccccchHHHHHHHHHHHHHHHHh-cccCch-hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHH
Confidence 3344333333444433333 444556655 444454 89999999999999999999987765432 122 357788
Q ss_pred hhHHHHHHHHHhCCCe
Q psy5020 98 ENVTCALNAINEDGIK 113 (120)
Q Consensus 98 eNv~~aL~flk~~gi~ 113 (120)
-||..+|++|++.||.
T Consensus 639 rNVdnFLeaCRkiGVp 654 (722)
T KOG0532|consen 639 RNVDNFLEACRKIGVP 654 (722)
T ss_pred HhHHHHHHHHHHcCCC
Confidence 9999999999999985
No 15
>KOG0516|consensus
Probab=96.92 E-value=0.00025 Score=64.94 Aligned_cols=80 Identities=34% Similarity=0.394 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc---ccccCCCCcHHHHHhhHHHHHHHHHhCCC
Q psy5020 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL---KFWIRKPTNQHQFLENVTCALNAINEDGI 112 (120)
Q Consensus 36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i---~~~~~~p~~r~qkieNv~~aL~flk~~gi 112 (120)
..+|+++|+.|++.++.+.-.+|++++.+|++ ...+.+++...+... ......+..+++.++|+..++.++++..+
T Consensus 72 ~~~~k~~f~~~~~~~l~~~~~~ve~~~~~l~~-~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~~~ 150 (1047)
T KOG0516|consen 72 DLVQKKLFPDWLAKELEKVMKHVEDLYEDLRD-LNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKEDLA 150 (1047)
T ss_pred HHHHHhccchhhHHHHHHhccchhHHhhhhhh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHHHH
Confidence 57899999999999999888899999999995 445555554444322 22223566789999999999999999888
Q ss_pred eEec
Q psy5020 113 KLVN 116 (120)
Q Consensus 113 ~lvn 116 (120)
.+++
T Consensus 151 el~~ 154 (1047)
T KOG0516|consen 151 ELVN 154 (1047)
T ss_pred HHHH
Confidence 8877
No 16
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=96.80 E-value=0.0023 Score=47.05 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=47.9
Q ss_pred HHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHH-HHHHHhCCCeE
Q psy5020 44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCA-LNAINEDGIKL 114 (120)
Q Consensus 44 t~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~a-L~flk~~gi~l 114 (120)
.+|+++ | ....+..++..||.||+.+.+++...-++.+. .| .++.+...++.|++.. -.+++..|+++
T Consensus 2 ~~WL~~-l-~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y-~~~~s~~~Kl~NW~~Ln~kvl~kl~~~l 72 (158)
T PF06294_consen 2 LKWLQS-L-DLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNY-SNGNSVAQKLNNWETLNEKVLKKLGIKL 72 (158)
T ss_dssp HHHHHH-S---S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT---
T ss_pred hHHHhc-C-CCCCCCCchHHHcccccHHHHHHHHHCCCCcccccc-CCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 479999 4 34467889999999999999999999988654 34 4678899999999999 99999999876
No 17
>KOG2996|consensus
Probab=96.72 E-value=0.0017 Score=56.92 Aligned_cols=54 Identities=31% Similarity=0.349 Sum_probs=47.1
Q ss_pred CcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCc-HHHHHhhHHHHHHHHHh
Q psy5020 56 LHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTN-QHQFLENVTCALNAINE 109 (120)
Q Consensus 56 ~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~-r~qkieNv~~aL~flk~ 109 (120)
..|-||.+.|+|||.||+|++.|.+.++. .++.+|.+ .|-++.|+...|.|+.+
T Consensus 28 a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~ 84 (865)
T KOG2996|consen 28 AQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE 84 (865)
T ss_pred chHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH
Confidence 35788999999999999999999998874 46667764 89999999999999987
No 18
>KOG0518|consensus
Probab=96.45 E-value=4.9e-05 Score=69.17 Aligned_cols=89 Identities=26% Similarity=0.135 Sum_probs=76.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 30 GHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 30 ~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
+..++|..++-..+|.|+-.+....|..+-+|..|+.||+.|+.++++++.....+++...-. +|+.+|++.|+.+...
T Consensus 18 g~~ae~~i~~~~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~~~~~skv~~~~p~-~q~~~~v~~a~~~ft~ 96 (1113)
T KOG0518|consen 18 GIVAEVKIQDNLDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLSAVDTSKVKKKGPG-IQGLHNVREALNKFTV 96 (1113)
T ss_pred CcceeeEEEecCCceEEEEEccccCcceeEEEEecCccccccceeeEEeeccccceeEEecCC-ccCcchhhhhhhhhhh
Confidence 677888888888888888777777888899999999999999999999998877664443333 8999999999999999
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.+..++||++
T Consensus 97 d~r~~~nigs 106 (1113)
T KOG0518|consen 97 DNRKETNIGS 106 (1113)
T ss_pred ccceeeccCC
Confidence 8899999986
No 19
>KOG3631|consensus
Probab=96.30 E-value=0.014 Score=47.09 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK 84 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~ 84 (120)
.++..++. .+.+..|||..|....+-|.+|.+||-||.+|-.|+|.|.+.++.
T Consensus 84 ~DpK~~el-~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~kle 136 (365)
T KOG3631|consen 84 KDPKFEEL-VKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLE 136 (365)
T ss_pred cChhHHHH-HHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhcc
Confidence 34444443 468999999999877788999999999999999999999998764
No 20
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=94.82 E-value=0.085 Score=48.10 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=72.1
Q ss_pred hhhhhccccCCCCcccccccccccchhhHHHHHHHH-------HHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHc
Q psy5020 7 RLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHT-------FKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQ 79 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~Q~kt-------ft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Ls 79 (120)
--++.|-+..+|-..-+.+| +.+....+... ...||...+... .+-.-+.+.||+||.|..|.+.+.
T Consensus 11 ~~~n~grpigt~~h~~t~~~-----ak~r~~lraYeyLCRv~EaK~WIee~~~~~-l~~~~fe~slRnGV~La~l~q~f~ 84 (1054)
T COG5261 11 YVENLGRPIGTPSHLKTKTS-----AKNRSALRAYEYLCRVSEAKIWIEEVIEEA-LPELCFEDSLRNGVFLAKLTQRFN 84 (1054)
T ss_pred HHHhcCCCCCCccccchhhh-----hhhhHHHHHHHHHHhHHHHHHHHHHHhccC-CchhhHHHHHhccchHHHHHHHhC
Confidence 34567755444443333333 34445555433 468999987543 444556778999999999999999
Q ss_pred CcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020 80 KRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK 113 (120)
Q Consensus 80 g~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~ 113 (120)
+..+..+...-++.|.+-+|+|+.|+++..-|+.
T Consensus 85 pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlP 118 (1054)
T COG5261 85 PDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLP 118 (1054)
T ss_pred CCceeEeeecccceeeccccHHHHHhHhhhcCCc
Confidence 9988765445788999999999999999987763
No 21
>KOG2128|consensus
Probab=94.08 E-value=0.097 Score=49.58 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-cccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020 42 TFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIK 113 (120)
Q Consensus 42 tft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-~~~~~p~~r~qkieNv~~aL~flk~~gi~ 113 (120)
.-.+||..-|+..=.+-++|.+.||+||.|..|-+..++..-. +|..+... |.+-+|++..+++|..-|+.
T Consensus 46 E~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-frHtdNi~q~~~~me~iglP 117 (1401)
T KOG2128|consen 46 EAKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-FRHTDNINQWLRAMESIGLP 117 (1401)
T ss_pred HHHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-eecchhHHHHHHHHhhcCCC
Confidence 3579999988766457899999999999999999999997544 46555554 99999999999999987764
No 22
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.11 E-value=0.17 Score=44.85 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-----cccCCC-CcHHHHHhhHHHHHHHHHh
Q psy5020 39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-----FWIRKP-TNQHQFLENVTCALNAINE 109 (120)
Q Consensus 39 Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-----~~~~~p-~~r~qkieNv~~aL~flk~ 109 (120)
-..++..|||+ +. .+.++.+ ++||.||+.|..+|..|.+..+. ++...+ ....-++.|+...++-+..
T Consensus 8 l~~~Lv~Wv~t-f~-~~~~~~~-~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 81 (713)
T PF05622_consen 8 LCDSLVTWVQT-FN-LSAPCSS-YEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKS 81 (713)
T ss_dssp HHHHHHHHHTT-----SS---S-HHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CC-CCCCcCC-HHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 45689999999 43 4445644 78999999999999999998654 222222 2345588999888887776
No 23
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=54.75 E-value=30 Score=25.20 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=54.1
Q ss_pred ccchhhHHHHHHHH--HHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCc-cccc-ccCCCCcHHHHHhhHHHHH
Q psy5020 29 KGHEDIWVDIQTHT--FKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR-KLKF-WIRKPTNQHQFLENVTCAL 104 (120)
Q Consensus 29 ~~~~~~w~~~Q~kt--ft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~-~i~~-~~~~p~~r~qkieNv~~aL 104 (120)
..+...|..++.+| |..=++..+. .......+.+++..-.....-||.++.. .-|. -...+.+ ...+++++.||
T Consensus 31 ~~l~~~~~~Vs~kT~~l~~~ce~Ll~-eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F-~~~L~~LD~cl 108 (157)
T PF04136_consen 31 DELQEQYNSVSEKTNSLHEACEQLLE-EQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSF-KPMLSRLDECL 108 (157)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHH-HHHHHHHHHHH
Confidence 34666777777666 7777887553 3356777888888888888888877643 1111 1123443 57899999999
Q ss_pred HHHHh
Q psy5020 105 NAINE 109 (120)
Q Consensus 105 ~flk~ 109 (120)
.|+.+
T Consensus 109 ~Fl~~ 113 (157)
T PF04136_consen 109 EFLEE 113 (157)
T ss_pred HHHHH
Confidence 99987
No 24
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=49.54 E-value=16 Score=25.08 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=16.7
Q ss_pred HHhhHHHHHHHHHhCCCeEec
Q psy5020 96 FLENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 96 kieNv~~aL~flk~~gi~lvn 116 (120)
=-.|+..|.++|++.||+++.
T Consensus 62 G~rNv~~a~~~L~~~gi~I~a 82 (114)
T PF03975_consen 62 GERNVEAARELLAEEGIPIVA 82 (114)
T ss_dssp HHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHHHHHCCCcEEE
Confidence 357999999999999999874
No 25
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=48.96 E-value=32 Score=23.11 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.4
Q ss_pred cccchhhhhhhHHHHHHHHHHHcCcc
Q psy5020 57 HVEDLAKDLADGTKLCALVEILQKRK 82 (120)
Q Consensus 57 ~V~dL~~DL~DGv~Li~LLe~Lsg~~ 82 (120)
+|+.|++=|+.|.-||.|.+.+.++.
T Consensus 2 PVt~LW~~fr~G~PLc~lfNal~p~~ 27 (89)
T PF06395_consen 2 PVTQLWKLFRQGYPLCVLFNALQPEE 27 (89)
T ss_pred cHHHHHHHHhCcCcHHHHHHccCCcc
Confidence 57889999999999999999999863
No 26
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=45.61 E-value=62 Score=22.07 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhhhh-hhH-----HHHHHHHHHHcCcccccccCCCCcHHHH-HhhHHHHHHHH
Q psy5020 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDL-ADG-----TKLCALVEILQKRKLKFWIRKPTNQHQF-LENVTCALNAI 107 (120)
Q Consensus 35 w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL-~DG-----v~Li~LLe~Lsg~~i~~~~~~p~~r~qk-ieNv~~aL~fl 107 (120)
..+.|.+....|+..+ |..+.+.+.|. ..| --|-.||+.+....+....-.-..|+-. ..-+-..+..|
T Consensus 16 s~~~Q~~~~~~~a~~~----g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l 91 (148)
T smart00857 16 SLERQLEALRAYAKAN----GWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELL 91 (148)
T ss_pred CHHHHHHHHHHHHHHC----CCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHH
Confidence 3567888888888764 45555566555 233 4588899888765543211111122222 22344456677
Q ss_pred HhCCCeEeccC
Q psy5020 108 NEDGIKLVNID 118 (120)
Q Consensus 108 k~~gi~lvnI~ 118 (120)
.+.||.++.+.
T Consensus 92 ~~~gi~l~~~~ 102 (148)
T smart00857 92 EKKGVRLVSVT 102 (148)
T ss_pred HHCCCEEEECc
Confidence 88999988653
No 27
>KOG0668|consensus
Probab=41.98 E-value=10 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=19.7
Q ss_pred cCCCCcHHHHHhhHH---------------------HHHHHHHhCCCe
Q psy5020 87 IRKPTNQHQFLENVT---------------------CALNAINEDGIK 113 (120)
Q Consensus 87 ~~~p~~r~qkieNv~---------------------~aL~flk~~gi~ 113 (120)
.+.|.+-|..++|.. .||+||.++||-
T Consensus 107 SktpaLiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GIm 154 (338)
T KOG0668|consen 107 SKTPSLIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIM 154 (338)
T ss_pred ccCchhHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcc
Confidence 346777777777754 588999988874
No 28
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=40.93 E-value=79 Score=21.11 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhhhh-------HHHHHHHHHHHcCccccc-ccCCCCcHHHH-HhhHHHHHHH
Q psy5020 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLAD-------GTKLCALVEILQKRKLKF-WIRKPTNQHQF-LENVTCALNA 106 (120)
Q Consensus 36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~D-------Gv~Li~LLe~Lsg~~i~~-~~~~p~~r~qk-ieNv~~aL~f 106 (120)
.+.|.+....|+..+ +..+.+.+.|..- ---|-.||+.+....... +.... .|+-. ..-+...+..
T Consensus 16 ~~~Q~~~~~~~a~~~----g~~i~~~~~d~~~s~~~~~~R~~~~~ll~~~~~~~~d~ivv~~~-~Rl~R~~~~~~~~~~~ 90 (137)
T cd00338 16 LERQREALREYAARN----GLEVVGEYEDAGSSATSLVDRPGLQRLLADVKAGKIDVVLVEKL-DRLSRNLVDLLELLEL 90 (137)
T ss_pred HHHHHHHHHHHHHHC----CCEEEEEEEeCCCCcccccCCHHHHHHHHHHHcCCCCEEEEEec-chhhCCHHHHHHHHHH
Confidence 567888888888774 4445555555422 235788888776433221 10001 11111 1134456677
Q ss_pred HHhCCCeEeccC
Q psy5020 107 INEDGIKLVNID 118 (120)
Q Consensus 107 lk~~gi~lvnI~ 118 (120)
|...||.++.++
T Consensus 91 l~~~gi~l~~~~ 102 (137)
T cd00338 91 LEAHGVRVVTAD 102 (137)
T ss_pred HHHCCCEEEEec
Confidence 778899987654
No 29
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.46 E-value=29 Score=25.45 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHhCCCeEec
Q psy5020 98 ENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 98 eNv~~aL~flk~~gi~lvn 116 (120)
.|+..|.++|++.||+++.
T Consensus 107 rNi~~a~~~L~~~gi~i~a 125 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVA 125 (157)
T ss_pred HHHHHHHHHHHHCCCcEEE
Confidence 8999999999999999874
No 30
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=37.93 E-value=1.5e+02 Score=22.77 Aligned_cols=70 Identities=14% Similarity=0.313 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhcccCCcccchhhhhhhHHH-----HHHHHHHHcCccccc---ccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 38 IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTK-----LCALVEILQKRKLKF---WIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 38 ~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~-----Li~LLe~Lsg~~i~~---~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
-|-+-.+.| +.++....+|+..|+. +..|+..+.+-++.+ .++.+-.||. ......+++.
T Consensus 73 rQv~~l~~~--------~~~~~~v~~digSgln~~Rk~~~kll~li~~~~V~rVvV~ykDRL~RFG----fe~le~~~~a 140 (193)
T COG2452 73 RQINYLTNY--------GYKVDEVLTDIGSGLNMQRKGLLKLLKLVEGNSVRRVVVSYKDRLNRFG----FELVEAVCKA 140 (193)
T ss_pred HHHHHHHHh--------ccccceeeehhhhhhhhhhhhHHHHHHHHcCCceeEEEEEccchHhHHh----HHHHHHHHHh
Confidence 344446666 4567777777777754 567787777766654 2333334454 6677788888
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.|+.+|-+++
T Consensus 141 ~~~eivvv~~ 150 (193)
T COG2452 141 HNVEIVVVNQ 150 (193)
T ss_pred cCcEEEEecC
Confidence 8998887653
No 31
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=37.46 E-value=32 Score=25.30 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHhhHHHHHHHHHhCCCeEec
Q psy5020 96 FLENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 96 kieNv~~aL~flk~~gi~lvn 116 (120)
=-.|+..|.++|++.||.++.
T Consensus 103 G~rNi~~a~~~L~~~gI~i~a 123 (159)
T PRK13495 103 GARNVEAVKKHLKDFGIKLVA 123 (159)
T ss_pred HHHHHHHHHHHHHHcCCcEEE
Confidence 357999999999999999875
No 32
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=37.22 E-value=32 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 111 ~rNv~~a~~~L~~~gI~i~a 130 (162)
T PRK13490 111 NRNGKAVKKKLKELSIPILA 130 (162)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 45999999999999999875
No 33
>PF09611 Cas_Csy1: CRISPR-associated protein (Cas_Csy1); InterPro: IPR013397 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=35.17 E-value=43 Score=28.05 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=24.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccc
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVED 60 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~d 60 (120)
...+|...-.+.|.+|+|..|.+..+.++|
T Consensus 341 ~~~dW~~~i~~~Fa~Wln~~l~~~~~~~gd 370 (378)
T PF09611_consen 341 EKGDWQDEIAKDFARWLNAQLKKKKLDFGD 370 (378)
T ss_pred hhCchHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 456899999999999999999874455555
No 34
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=34.77 E-value=97 Score=21.75 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhhhhH-----HHHHHHHHHHcCccc---ccccCCCCcHHHHHhhHHHHHHHH
Q psy5020 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADG-----TKLCALVEILQKRKL---KFWIRKPTNQHQFLENVTCALNAI 107 (120)
Q Consensus 36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DG-----v~Li~LLe~Lsg~~i---~~~~~~p~~r~qkieNv~~aL~fl 107 (120)
.+.|.+.+..|+.. .|..+.+++.|--.| --|..|++.+....+ .+..+-++.... -+...+.++
T Consensus 14 ~~~Q~~~l~~~a~~----~g~~~~~i~~d~~SG~~~~Rp~~~~ll~~~~~gd~lvv~~ldRl~R~~~~---~~~~~~~~l 86 (146)
T cd03767 14 ATRAKESLEAFATE----RGFYIAGFYVENASGAKLDRPELFRLLDDAQSGDVLLVEQIDRLSRLPLD---DWETLKASI 86 (146)
T ss_pred HHHHHHHHHHHHHH----CCCEEEEEEEECCcCCCCCCHHHHHHHHHhhCCCEEEEEeCccccCCCHH---HHHHHHHHH
Confidence 46788889999876 344444455443333 347777776664432 222222221122 223456788
Q ss_pred HhCCCeEeccC
Q psy5020 108 NEDGIKLVNID 118 (120)
Q Consensus 108 k~~gi~lvnI~ 118 (120)
++.||.++.+.
T Consensus 87 ~~~gv~l~~i~ 97 (146)
T cd03767 87 AAKGLRVVSLD 97 (146)
T ss_pred HHCCcEEEEee
Confidence 88999998775
No 35
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=34.28 E-value=39 Score=25.05 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 114 ~rNi~~a~~~L~~~gi~i~a 133 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLKA 133 (167)
T ss_pred HHHHHHHHHHHHHCCCcEEE
Confidence 57999999999999999874
No 36
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=34.07 E-value=1e+02 Score=24.73 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=42.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHcC-cccc-------cccCCCCcHHHHHhhHHHHHHHHHhCCCeEe
Q psy5020 58 VEDLAKDLADGTKLCALVEILQK-RKLK-------FWIRKPTNQHQFLENVTCALNAINEDGIKLV 115 (120)
Q Consensus 58 V~dL~~DL~DGv~Li~LLe~Lsg-~~i~-------~~~~~p~~r~qkieNv~~aL~flk~~gi~lv 115 (120)
+.+-..++++||-+....-.--| +.+. .-...+.++..-++|+..|-+.+...||.++
T Consensus 76 lp~r~~~fr~~v~~a~~ya~aLg~~~vh~mag~~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~l 141 (260)
T COG3622 76 LPGREEEFRLGVALAIEYATALGCKQVHCLAGIPPEGVDTEAMWATFVENLRYAADLLAAEGIRLL 141 (260)
T ss_pred CCCchHHHHhHHHHHHHHHHHhCCCceeeeecCCCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 56678899999998888765555 3321 1112344566789999999999999998874
No 37
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.61 E-value=39 Score=25.92 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 114 ~rNie~a~~~L~~~GI~iva 133 (199)
T PRK13491 114 QANAAFARRYLRDEGIRCTA 133 (199)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 46999999999999999975
No 38
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.73 E-value=39 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 138 ~rNi~~a~~~L~~~gI~Iva 157 (213)
T PRK13493 138 EKNVEFVLEYAKREKLNVVA 157 (213)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999999975
No 39
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.95 E-value=45 Score=24.71 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.6
Q ss_pred HHhhHHHHHHHHHhCCCeEec
Q psy5020 96 FLENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 96 kieNv~~aL~flk~~gi~lvn 116 (120)
=-.|+..|.++|++.||.++.
T Consensus 112 G~rNv~~a~~~L~~~gI~i~a 132 (163)
T PRK13494 112 GLENSEFAVNTLNKYGIPILA 132 (163)
T ss_pred HHHHHHHHHHHHHHcCCcEEE
Confidence 357999999999999999875
No 40
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.68 E-value=44 Score=25.57 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 126 ~rNi~~a~~~L~~~gI~iva 145 (201)
T PRK13487 126 ERNAEFVRDYLQTERIPIVA 145 (201)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 57999999999999999985
No 41
>TIGR02564 cas_Csy1 CRISPR-associated protein, Csy1 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=31.11 E-value=54 Score=27.66 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCCcccc
Q psy5020 33 DIWVDIQTHTFKNWVNEHLKSVGLHVED 60 (120)
Q Consensus 33 ~~w~~~Q~ktft~WiN~~L~~~~~~V~d 60 (120)
.+|.+.-.+.|-+|+|..|.+..+.++|
T Consensus 340 ~DW~~~v~~~Fa~WLn~~L~~~~~~~gd 367 (384)
T TIGR02564 340 GDWDQEVEKDFARWLNKRLQHDRLEFGD 367 (384)
T ss_pred CchHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 5899999999999999999765555555
No 42
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=30.90 E-value=47 Score=25.07 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||+++.
T Consensus 111 ~rNi~~a~~~L~~~gI~i~a 130 (184)
T PRK13497 111 EQNAAFAMQFLRDEGIPVVG 130 (184)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999999875
No 43
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=28.19 E-value=56 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhCCCeEec
Q psy5020 98 ENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 98 eNv~~aL~flk~~gi~lvn 116 (120)
.|+..|.+||++.||.++.
T Consensus 114 rNv~~~~~~L~~~~Ipila 132 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILA 132 (164)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 5999999999999999874
No 44
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.37 E-value=57 Score=25.64 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 124 ~RNieaa~~~L~~~gI~Iva 143 (233)
T PRK13489 124 DRNADFVRRYLALERIRITA 143 (233)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999999975
No 45
>KOG2544|consensus
Probab=26.54 E-value=59 Score=28.74 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.2
Q ss_pred HHHHhhHHHHH-HHHHhCCCeEeccCCC
Q psy5020 94 HQFLENVTCAL-NAINEDGIKLVNIDYL 120 (120)
Q Consensus 94 ~qkieNv~~aL-~flk~~gi~lvnI~~~ 120 (120)
=.+++|+..|| .++|+.||++.+++++
T Consensus 262 Gdrf~~iq~AL~~L~k~~gi~v~~~S~l 289 (711)
T KOG2544|consen 262 GDRFNNIQEALQRLMKEKGIKVTRHSCL 289 (711)
T ss_pred hHHHHHHHHHHHHHHHhccEEEeeeccc
Confidence 45799999999 5566799999998864
No 46
>KOG3000|consensus
Probab=25.61 E-value=1.5e+02 Score=24.07 Aligned_cols=69 Identities=20% Similarity=0.407 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCC
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGI 112 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi 112 (120)
+..+..|+|..|. .+. -..++++.|-.-|.++..+-+..++ +..=..+.--..+.|...--.-.++.||
T Consensus 17 R~E~laW~N~~l~-~n~---~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi 87 (295)
T KOG3000|consen 17 RLEILAWINDLLQ-LNL---TKIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGI 87 (295)
T ss_pred hHHHHHHHHhhhh-cch---hhhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhcCC
Confidence 3459999999764 321 2346788999999999999886553 2211334344455555544444444443
No 47
>KOG0035|consensus
Probab=25.34 E-value=50 Score=30.80 Aligned_cols=71 Identities=17% Similarity=0.353 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhcccC-CcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCC
Q psy5020 40 THTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGI 112 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~-~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi 112 (120)
+.....|+...-.... ..|.|+.+..+||..+|.++..-.+.-++-|.. .+.-..++|++.|.+.... .++
T Consensus 144 ~egllLwcq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~--lt~~~~~~n~~~A~~iAek~l~i 216 (890)
T KOG0035|consen 144 KEGLLLWCQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDK--LTKQDPVENLNLAFDIAEKFLGI 216 (890)
T ss_pred hhhhhhheecccCCccccccccceecccchHHHHHHHHhcChhhhhhhhh--cCccchhHHhhhhhhhhhhcCCc
Confidence 3456778877554443 478999999999999999999988877765543 3456789999999999887 444
No 48
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=24.70 E-value=1e+02 Score=20.61 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=29.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHH
Q psy5020 28 IKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALV 75 (120)
Q Consensus 28 ~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LL 75 (120)
|+.--..|...|-.....|+-....-.++.+.++ --+|-.||.|=
T Consensus 15 IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~Ls 59 (89)
T cd08534 15 IPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDW---NITGRELCSLT 59 (89)
T ss_pred CCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhc---CCCHHHHhcCC
Confidence 4444558999998888888777554333333332 24888888763
No 49
>KOG0517|consensus
Probab=24.28 E-value=1.4e+02 Score=30.61 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhcccC-CcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCC
Q psy5020 40 THTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGI 112 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~-~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi 112 (120)
|..+.-||.-...... +.|+|+.+.-+||..+-.|+-.=-+.=+.--..+ +-..+.|++.|++...+ .||
T Consensus 169 KDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~---k~na~~NL~~AFdvAE~~LGi 240 (2473)
T KOG0517|consen 169 KDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLK---KSNALYNLQHAFDVAEQELGI 240 (2473)
T ss_pred HHHHHHHHHhhccCCCCcccccCccchhcchhHHHHHHhcCcchhhhcccC---CCchhhHHHHHHHHHHHHcCc
Confidence 5569999999776654 5799999999999999999976666544211112 23457899999998876 454
No 50
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.47 E-value=66 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHhhHHHHHHHHHhCCCeEeccCC
Q psy5020 96 FLENVTCALNAINEDGIKLVNIDY 119 (120)
Q Consensus 96 kieNv~~aL~flk~~gi~lvnI~~ 119 (120)
...+.+..++|+++.+|.+|=|||
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESS
T ss_pred CCCCHHHHHHHHHHcCCCEEEECC
Confidence 678899999999999999998886
No 51
>PHA00727 hypothetical protein
Probab=21.96 E-value=17 Score=28.33 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHH
Q psy5020 33 DIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCAL 74 (120)
Q Consensus 33 ~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~L 74 (120)
.+..++..+.-.+|||+.|-...-.|. +.+.=+||.-|+-|
T Consensus 75 kekvdv~vkv~kkwinsrlftaehyva-mlqqs~dglqllfl 115 (278)
T PHA00727 75 KEKVDVRVKVVKKWINSRLFTAEHYVA-MLQQSKDGLQLLFL 115 (278)
T ss_pred hhhcceeeehhHHHHhhhhccHHHHHH-HHHhcccchhhhhh
Confidence 344455557788999998854433343 45566889877654
No 52
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=20.90 E-value=98 Score=28.09 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=41.5
Q ss_pred chhhHHHH-HHHHHHHHHHHh--hcccC--CcccchhhhhhhHHHHHHHHHHHcCc-ccccc
Q psy5020 31 HEDIWVDI-QTHTFKNWVNEH--LKSVG--LHVEDLAKDLADGTKLCALVEILQKR-KLKFW 86 (120)
Q Consensus 31 ~~~~w~~~-Q~ktft~WiN~~--L~~~~--~~V~dL~~DL~DGv~Li~LLe~Lsg~-~i~~~ 86 (120)
-...|.+. -.++|-+|+-.- +...+ ..+.||..+|+.-+-|+.+|+.+.++ ++|+|
T Consensus 268 k~d~wdeqkf~~~~~r~v~~wrh~K~d~~~~~~knli~~lKqk~~~i~~L~~~~p~~TIPPY 329 (802)
T TIGR03031 268 KPDQWDEQKFGNEFLRMLKNWRHLKGDQESLAVRNLIQQLKQKQDYISILEKTPPEITIPPY 329 (802)
T ss_pred ccccccHhHHHHHHHHHHHhccCcCCcHhHHHHHHHHHHHhccchHHHHHHhCCCcccCCCc
Confidence 34467652 257899998763 32222 36899999999999999999999987 57765
No 53
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=20.50 E-value=3.7e+02 Score=20.03 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=48.1
Q ss_pred hhhhhccccCCCCcccccccccccchhhHHHHHHHHHHHH---HHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcc
Q psy5020 7 RLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNW---VNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRK 82 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~Q~ktft~W---iN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~ 82 (120)
+|...||+.|.+.+.-.-...+. +-+.......+....+ -+..+. +. +..+|+..|.+=..|..||..|-|..
T Consensus 82 rLE~kGlI~R~~~~~DrR~~~I~-LTekG~~l~~~l~~~~~~~e~~~~~--~~s~~~~l~~~~~e~~~l~~ll~~iy~~~ 158 (185)
T PRK13777 82 KLEERGYLTFSKKEDDKRNTYIE-LTEKGEELLLETMEEYDPENNSVFN--GALPLRELYGKFPEFIELMAIVRNIYGDD 158 (185)
T ss_pred HHHHCCCEEecCCCCCCCeeEEE-ECHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHhhhhHHHHHHHHHHHHHhCcH
Confidence 67889999998776644444444 5556666665554333 333322 22 56778889999899999999776654
No 54
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=20.30 E-value=1.2e+02 Score=18.91 Aligned_cols=39 Identities=21% Similarity=0.549 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHH
Q psy5020 34 IWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALV 75 (120)
Q Consensus 34 ~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LL 75 (120)
.|...|......|+-....-..+.+.++ --+|-.||.|=
T Consensus 4 ~Ws~~~V~~WL~w~~~ef~L~~~~~~~F---~m~Gk~LC~ls 42 (66)
T cd08536 4 SWSREHVRTWLRWVSARYQLEVVDLDKF---LMNGKGLCLMS 42 (66)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCcccc---CCCHHHHHcCC
Confidence 6788887777777766443332333333 24899999864
No 55
>PF14502 HTH_41: Helix-turn-helix domain
Probab=20.21 E-value=94 Score=18.56 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHhCC
Q psy5020 98 ENVTCALNAINEDG 111 (120)
Q Consensus 98 eNv~~aL~flk~~g 111 (120)
--++.||+||++.|
T Consensus 21 GtiQ~Alk~Le~~g 34 (48)
T PF14502_consen 21 GTIQNALKFLEENG 34 (48)
T ss_pred hHHHHHHHHHHHCC
Confidence 35778999999865
Done!