Query psy5020
Match_columns 120
No_of_seqs 109 out of 662
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:47:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vzc_A Alpha-parvin; membrane, 100.0 5.7E-29 2E-33 176.7 8.8 89 31-119 15-105 (131)
2 4b7l_A Filamin-B; structural p 99.9 1.1E-27 3.7E-32 192.8 8.4 89 31-119 10-99 (347)
3 2yrn_A Neuron navigator 2 isof 99.9 9.3E-28 3.2E-32 169.3 6.8 94 26-119 6-101 (129)
4 3hoc_A Filamin-A; calponin hom 99.9 1.5E-26 5.1E-31 181.3 7.9 89 31-119 40-129 (272)
5 2wa7_A Filamin-B; disease muta 99.9 2.5E-25 8.5E-30 171.2 8.0 89 31-119 13-102 (245)
6 3f7p_A Plectin-1; plakin, hemi 99.9 5E-25 1.7E-29 174.5 8.3 92 26-119 61-152 (296)
7 1wku_A Alpha-actinin 3; calpon 99.9 1.2E-24 4.1E-29 168.3 8.3 92 27-119 16-107 (254)
8 1sh5_A Plectin 1, PLTN, PCN; a 99.9 2.5E-23 8.7E-28 159.5 8.4 87 31-119 5-96 (245)
9 1dxx_A Dystrophin; structural 99.9 3.6E-23 1.2E-27 159.0 7.2 87 31-119 9-96 (246)
10 1sjj_A Actinin; 3-helix bundle 99.9 3.2E-22 1.1E-26 173.3 6.7 87 32-119 2-88 (863)
11 1aoa_A T-fimbrin; actin-bindin 99.9 9E-22 3.1E-26 153.3 7.7 90 30-119 16-116 (275)
12 1pxy_A Fimbrin-like protein; c 99.8 1.9E-20 6.4E-25 156.3 7.4 86 32-119 270-358 (506)
13 1rt8_A Fimbrin; filamentous ac 99.8 5.4E-19 1.9E-23 147.8 8.8 87 30-119 278-371 (513)
14 1rt8_A Fimbrin; filamentous ac 99.7 1.2E-18 4.1E-23 145.7 6.9 89 31-119 5-109 (513)
15 1pxy_A Fimbrin-like protein; c 99.7 3E-18 1E-22 142.9 6.7 87 33-119 2-100 (506)
16 1p5s_A RAS GTPase-activating-l 99.4 2.7E-13 9.3E-18 102.2 7.5 87 31-117 47-134 (203)
17 1wyp_A Calponin 1; CH domain, 99.4 6.7E-13 2.3E-17 94.3 6.6 83 31-116 10-92 (136)
18 1wyn_A Calponin-2; CH domain, 99.3 1E-12 3.5E-17 94.4 5.6 83 31-116 10-92 (146)
19 1wyr_A RHO guanine nucleotide 99.3 2.3E-12 7.7E-17 90.0 7.0 75 40-114 8-88 (121)
20 1h67_A Calponin alpha; cytoske 99.3 1.3E-12 4.5E-17 89.3 5.5 74 40-116 5-78 (108)
21 1wym_A Transgelin-2; CH domain 99.3 2.8E-12 9.6E-17 92.8 6.6 85 31-117 10-102 (155)
22 1ujo_A Transgelin; CH domain, 99.3 4.2E-12 1.4E-16 90.9 6.4 80 36-116 7-94 (144)
23 1p2x_A RNG2 protein, RAS GTPas 99.3 7.7E-12 2.6E-16 90.9 7.1 76 41-117 14-90 (159)
24 2l3g_A RHO guanine nucleotide 99.2 2.4E-11 8.1E-16 85.4 8.0 75 40-114 14-95 (126)
25 1wjo_A T-plastin; CH domain, a 99.2 2E-11 6.7E-16 85.9 7.0 78 37-114 6-88 (124)
26 2rr8_A Iqgap1 protein; F-actin 99.1 9.7E-11 3.3E-15 87.3 5.4 85 31-116 19-112 (190)
27 3i6x_A P195, RAS GTPase-activa 99.1 2.6E-10 8.8E-15 85.3 6.6 74 42-116 51-134 (193)
28 2qjz_A Microtubule-associated 98.8 1.3E-08 4.6E-13 71.2 8.1 71 40-114 7-79 (123)
29 1wyo_A Protein EB3, microtubul 98.7 2.6E-08 9.1E-13 72.5 7.5 72 39-114 23-96 (159)
30 1aoa_A T-fimbrin; actin-bindin 98.5 1.7E-07 5.9E-12 72.5 5.8 74 40-113 170-250 (275)
31 1wyl_A NEDD9 interacting prote 98.5 2.6E-07 9E-12 63.6 6.0 71 40-113 9-81 (116)
32 2d89_A EHBP1 protein; all alph 98.5 2.6E-07 8.8E-12 63.9 5.6 71 40-113 11-82 (119)
33 2d87_A Smoothelin splice isofo 98.4 3.6E-07 1.2E-11 64.0 5.5 71 40-113 9-81 (128)
34 3ky9_A Proto-oncogene VAV; cal 98.4 5.4E-07 1.9E-11 75.8 7.2 70 43-113 10-92 (587)
35 2d88_A Protein mical-3; all al 98.4 4E-07 1.4E-11 63.1 5.1 69 42-113 13-83 (121)
36 1bkr_A Spectrin beta chain; fi 98.4 4.7E-07 1.6E-11 61.7 5.3 71 40-113 5-77 (109)
37 1bhd_A Utrophin; calponin homo 98.3 4.4E-07 1.5E-11 62.7 3.4 71 40-113 10-82 (118)
38 1wyq_A Spectrin beta chain, br 98.3 6.7E-07 2.3E-11 62.5 4.4 71 40-113 9-81 (127)
39 2wa7_A Filamin-B; disease muta 98.3 1.6E-06 5.4E-11 66.1 6.2 70 40-113 145-215 (245)
40 3hoc_A Filamin-A; calponin hom 98.2 2.3E-06 7.9E-11 66.7 5.6 70 40-113 172-242 (272)
41 1sh5_A Plectin 1, PLTN, PCN; a 98.1 1.1E-06 3.8E-11 66.8 2.9 72 39-113 134-207 (245)
42 1wku_A Alpha-actinin 3; calpon 98.1 1.2E-05 4.2E-10 61.6 7.9 71 40-113 142-214 (254)
43 3f7p_A Plectin-1; plakin, hemi 98.1 3.6E-06 1.2E-10 66.3 4.9 72 39-113 190-263 (296)
44 1dxx_A Dystrophin; structural 98.0 7E-06 2.4E-10 62.5 5.5 71 40-113 137-210 (246)
45 4b7l_A Filamin-B; structural p 98.0 9.1E-06 3.1E-10 65.0 5.6 70 40-113 142-212 (347)
46 2ee7_A Sperm flagellar protein 97.5 0.0004 1.4E-08 48.6 7.2 76 37-114 14-91 (127)
47 1sjj_A Actinin; 3-helix bundle 97.2 0.00011 3.7E-09 63.6 2.0 71 40-113 123-195 (863)
48 2qjx_A Protein BIM1; calponin 97.1 0.0034 1.2E-07 43.8 8.5 69 40-113 12-82 (127)
49 2r8u_A Microtubule-associated 96.9 0.0054 1.8E-07 47.8 8.6 71 40-114 17-89 (268)
50 4abo_I MAL3, microtubule integ 96.9 0.0056 1.9E-07 43.7 8.0 70 40-114 8-79 (145)
51 1wix_A HOOK homolog 1, RSGI RU 95.2 0.043 1.5E-06 39.4 6.0 68 39-109 10-83 (164)
52 3g13_A Putative conjugative tr 37.7 33 0.0011 23.3 3.6 81 35-118 24-112 (169)
53 3lhk_A Putative DNA binding pr 34.9 38 0.0013 23.1 3.5 73 35-118 19-101 (154)
54 2f9z_C Protein (chemotaxis met 33.8 26 0.00088 24.8 2.5 20 97-116 104-123 (159)
55 3dhx_A Methionine import ATP-b 26.3 32 0.0011 22.1 1.8 21 98-118 76-96 (106)
56 3guv_A Site-specific recombina 23.3 1.3E+02 0.0045 20.1 4.7 76 35-118 23-112 (167)
57 3bvp_A INT, TP901-1 integrase; 22.7 40 0.0014 22.1 1.8 76 36-118 23-109 (138)
No 1
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=99.96 E-value=5.7e-29 Score=176.67 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=84.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHH
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAIN 108 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk 108 (120)
.+++|+.+|++|||+|||+||.+.+.+|+||++||+||+.||.|+|.|+|+++| +++++|++++|++|||+.||+|++
T Consensus 15 ~~~e~~~~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk 94 (131)
T 2vzc_A 15 HAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQ 94 (131)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999999999999999999886 577889999999999999999999
Q ss_pred hCCCeEeccCC
Q psy5020 109 EDGIKLVNIDY 119 (120)
Q Consensus 109 ~~gi~lvnI~~ 119 (120)
+.||+++||+|
T Consensus 95 ~~gi~l~~I~~ 105 (131)
T 2vzc_A 95 DGGLEKPKPRP 105 (131)
T ss_dssp HTTCCCCSSCH
T ss_pred HcCCCcCCCCH
Confidence 99999999986
No 2
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=99.94 E-value=1.1e-27 Score=192.82 Aligned_cols=89 Identities=42% Similarity=0.719 Sum_probs=82.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc-ccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF-WIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~-~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
.+++|+++|++|||+|||+||.+++.+|+||++||+||+.||+|+|+|+|+++++ ++++|++|+|++|||+.||+|+++
T Consensus 10 ~d~~we~iQ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~ 89 (347)
T 4b7l_A 10 EDAPWKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR 89 (347)
T ss_dssp ---CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999974 778999999999999999999999
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.|++++||++
T Consensus 90 ~g~~lv~i~~ 99 (347)
T 4b7l_A 90 ESIKLVSIDS 99 (347)
T ss_dssp TTCCCSSCCH
T ss_pred hccccCCCCc
Confidence 9999999985
No 3
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=9.3e-28 Score=169.29 Aligned_cols=94 Identities=22% Similarity=0.401 Sum_probs=87.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhcccCC--cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHH
Q psy5020 26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGL--HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103 (120)
Q Consensus 26 ~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~--~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~a 103 (120)
.+.+..+++|++.|+++|++|||++|.+.+. .|+||++||+||++||.|+|.|+|+++++++++|++++|++|||+.|
T Consensus 6 ~~~~~~~~~~~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~a 85 (129)
T 2yrn_A 6 SGKRKPVIHGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDAC 85 (129)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHH
T ss_pred cchhcccchhhHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHH
Confidence 3555688899999999999999999998875 59999999999999999999999999999888899999999999999
Q ss_pred HHHHHhCCCeEeccCC
Q psy5020 104 LNAINEDGIKLVNIDY 119 (120)
Q Consensus 104 L~flk~~gi~lvnI~~ 119 (120)
|+|+++.|+++++|++
T Consensus 86 L~~~~~~gv~~~~i~~ 101 (129)
T 2yrn_A 86 LNFLAAKGINIQGLSA 101 (129)
T ss_dssp HHHHHHHTCCCTTCCH
T ss_pred HHHHHHhCCcccCCCh
Confidence 9999999999999975
No 4
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=99.93 E-value=1.5e-26 Score=181.31 Aligned_cols=89 Identities=42% Similarity=0.713 Sum_probs=83.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc-ccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i-~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
.+++|+.+|+++|++|||+||.+.+..|+||++||+||+.||.|+|+|+|+++ ++++.+|++++|++|||+.||+|+++
T Consensus 40 ~d~~w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~ 119 (272)
T 3hoc_A 40 EDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDR 119 (272)
T ss_dssp --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred hChhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999 77878899999999999999999999
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.|++++||++
T Consensus 120 ~gv~lvnI~~ 129 (272)
T 3hoc_A 120 ESIKLVSIDS 129 (272)
T ss_dssp TTCCCSSCCH
T ss_pred cCCccccccc
Confidence 9999999985
No 5
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=99.92 E-value=2.5e-25 Score=171.16 Aligned_cols=89 Identities=40% Similarity=0.729 Sum_probs=83.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc-ccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i-~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
.++.|+.+|+++|++|||++|.+.+..|+||++||+||+.||+|+|+|+|+++ ++++++|++++|++|||+.||+|+++
T Consensus 13 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~ 92 (245)
T 2wa7_A 13 EDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR 92 (245)
T ss_dssp --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999998888999999999999999999999999998 67878899999999999999999999
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.|++++||++
T Consensus 93 ~g~~lv~I~~ 102 (245)
T 2wa7_A 93 ESIKLVSIDS 102 (245)
T ss_dssp TTCCCCSCCH
T ss_pred cCCcccCCCH
Confidence 9999999985
No 6
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=99.91 E-value=5e-25 Score=174.50 Aligned_cols=92 Identities=35% Similarity=0.483 Sum_probs=85.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHH
Q psy5020 26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALN 105 (120)
Q Consensus 26 ~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~ 105 (120)
..+...+++|+.+|+++|++|||++|.+.+..|+||++||+||++||+|+|+|+|+++++ .+|++++|++|||+.||+
T Consensus 61 ~~~~~~~~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~--~~~~~r~~kleNvn~aL~ 138 (296)
T 3f7p_A 61 RAVIRIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRMRFHKLQNVQIALD 138 (296)
T ss_dssp --CEECCCHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--CCCSSHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc--cCCcChhhhhhhHHHHHH
Confidence 456678899999999999999999999988899999999999999999999999999987 468999999999999999
Q ss_pred HHHhCCCeEeccCC
Q psy5020 106 AINEDGIKLVNIDY 119 (120)
Q Consensus 106 flk~~gi~lvnI~~ 119 (120)
|+++.|++++||++
T Consensus 139 ~lk~~gv~lv~I~~ 152 (296)
T 3f7p_A 139 YLRHRQVKLVNIRN 152 (296)
T ss_dssp HHHHTTCCCTTCCH
T ss_pred HHHHhCccccCCCh
Confidence 99999999999985
No 7
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=99.91 E-value=1.2e-24 Score=168.33 Aligned_cols=92 Identities=30% Similarity=0.493 Sum_probs=81.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHH
Q psy5020 27 QIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNA 106 (120)
Q Consensus 27 ~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~f 106 (120)
+...++++|+.+|+++|++|||++|.+.+..|+||++||+||+.||+|+|.|+|++++++ .+|++++|++|||+.||+|
T Consensus 16 ~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~-~~~~~~~~~~eNi~~aL~~ 94 (254)
T 1wku_A 16 RDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRP-DKGKMRFHKIANVNKALDF 94 (254)
T ss_dssp -------CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCC-CSCCSHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCC-CCCccHHHHHHhHHHHHHH
Confidence 344588899999999999999999999999999999999999999999999999999886 4689999999999999999
Q ss_pred HHhCCCeEeccCC
Q psy5020 107 INEDGIKLVNIDY 119 (120)
Q Consensus 107 lk~~gi~lvnI~~ 119 (120)
+++.||+++||++
T Consensus 95 ~k~~gv~lv~I~~ 107 (254)
T 1wku_A 95 IASKGVKLVSIGA 107 (254)
T ss_dssp HHTTTCCCCSCCH
T ss_pred HHHcCCCccCCCH
Confidence 9999999999985
No 8
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=99.89 E-value=2.5e-23 Score=159.53 Aligned_cols=87 Identities=37% Similarity=0.513 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhcc-----cCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHH
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKS-----VGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALN 105 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~-----~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~ 105 (120)
.+++|+.+|+++|++|||++|.+ .+..|+||++||+||+.||+|+|.|+|+++++ .+|++++|++||++.||+
T Consensus 5 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~--~~~~~~~~~~eNv~~aL~ 82 (245)
T 1sh5_A 5 EFDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRMRFHKLQNVQIALD 82 (245)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--CCCCSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC--CCCcchHHHHHhHHHHHH
Confidence 35689999999999999999988 45689999999999999999999999999986 468899999999999999
Q ss_pred HHHhCCCeEeccCC
Q psy5020 106 AINEDGIKLVNIDY 119 (120)
Q Consensus 106 flk~~gi~lvnI~~ 119 (120)
|+++.|++++||++
T Consensus 83 ~~k~~g~~l~~I~~ 96 (245)
T 1sh5_A 83 YLRHRQVKLVNIRN 96 (245)
T ss_dssp HHHHTTCCCCSCCH
T ss_pred HHHHcCCcccCCCh
Confidence 99999999999975
No 9
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=99.88 E-value=3.6e-23 Score=159.05 Aligned_cols=87 Identities=36% Similarity=0.535 Sum_probs=81.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
.+++|+.+|+++|++|||++|.+.+. +|+|+++||+||+.||+|+|.|+|+++++ .+|++++|++||++.||+|+++
T Consensus 9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~--~~~~~~~~~~eNv~~aL~~~k~ 86 (246)
T 1dxx_A 9 DSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK--EKGSTRVHALNNVNKALRVLQN 86 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC--CCCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC--CCCccHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998774 79999999999999999999999999986 3688999999999999999999
Q ss_pred CCCeEeccCC
Q psy5020 110 DGIKLVNIDY 119 (120)
Q Consensus 110 ~gi~lvnI~~ 119 (120)
.|++++||++
T Consensus 87 ~g~~l~~I~~ 96 (246)
T 1dxx_A 87 NNVDLVNIGS 96 (246)
T ss_dssp TTCCCTTCCH
T ss_pred cCCccccCCH
Confidence 9999999985
No 10
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.86 E-value=3.2e-22 Score=173.26 Aligned_cols=87 Identities=32% Similarity=0.554 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCC
Q psy5020 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDG 111 (120)
Q Consensus 32 ~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~g 111 (120)
++.|+.+|+++|++|||++|.+.+++|+||++||+||++||.|+|+|+|++++++. +|++++|+++||+.||+|++..|
T Consensus 2 ~~~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~-~~~~~~~~~eN~~~~l~~~~~~g 80 (863)
T 1sjj_A 2 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE-RGKMRVHKISNVNKALDFIASKG 80 (863)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSC-CCSSHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCC-CCccHHHHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999999999999999998864 68999999999999999999999
Q ss_pred CeEeccCC
Q psy5020 112 IKLVNIDY 119 (120)
Q Consensus 112 i~lvnI~~ 119 (120)
|++|||++
T Consensus 81 ~~~~~i~~ 88 (863)
T 1sjj_A 81 VKLVSIGA 88 (863)
T ss_dssp CCCTTCCS
T ss_pred CccCCCCh
Confidence 99999986
No 11
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.85 E-value=9e-22 Score=153.26 Aligned_cols=90 Identities=26% Similarity=0.429 Sum_probs=76.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHh
Q psy5020 30 GHEDIWVDIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLE 98 (120)
Q Consensus 30 ~~~~~w~~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkie 98 (120)
+.+..|.+.|+++|++|||++|.+.+ ..|.|+++||+||+.||+|+|.|+|++++ +++++|.+++|++|
T Consensus 16 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~e 95 (275)
T 1aoa_A 16 GTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQE 95 (275)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHH
Confidence 36679999999999999999998742 25799999999999999999999999987 45555667999999
Q ss_pred hHHHHHHHHHhCCCeEeccCC
Q psy5020 99 NVTCALNAINEDGIKLVNIDY 119 (120)
Q Consensus 99 Nv~~aL~flk~~gi~lvnI~~ 119 (120)
||+.||+|+++.|++++||++
T Consensus 96 Nv~~aL~~~k~~g~~l~~I~~ 116 (275)
T 1aoa_A 96 NLNLALNSASAIGCHVVNIGA 116 (275)
T ss_dssp HHHHHHHHHHHTTCCCTTCCH
T ss_pred HHHHHHHHHHHcCCcccCCCH
Confidence 999999999999999999975
No 12
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.81 E-value=1.9e-20 Score=156.29 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc--ccCCC-CcHHHHHhhHHHHHHHHH
Q psy5020 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF--WIRKP-TNQHQFLENVTCALNAIN 108 (120)
Q Consensus 32 ~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~~~p-~~r~qkieNv~~aL~flk 108 (120)
+..|+.+|+++|++|||+++ .+..|+||++||+||+.||+|+|+|+|++++. .++.| ++|+|++|||+.||+|++
T Consensus 270 ~~~~~~~q~ktf~~WiN~~~--~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k 347 (506)
T 1pxy_A 270 EDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK 347 (506)
T ss_dssp -CCHHHHHHHHHHHHHTTTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcC--CCCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHH
Confidence 56899999999999999986 45789999999999999999999999998852 33333 689999999999999999
Q ss_pred hCCCeEeccCC
Q psy5020 109 EDGIKLVNIDY 119 (120)
Q Consensus 109 ~~gi~lvnI~~ 119 (120)
+.|++++||++
T Consensus 348 ~~~v~l~~I~~ 358 (506)
T 1pxy_A 348 QLKFSLVNVAG 358 (506)
T ss_dssp HTTCCCCSCCH
T ss_pred HcCCcccCCCH
Confidence 99999999985
No 13
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.77 E-value=5.4e-19 Score=147.76 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=71.4
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc--ccccCCC-----CcHHHHHhhHHH
Q psy5020 30 GHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL--KFWIRKP-----TNQHQFLENVTC 102 (120)
Q Consensus 30 ~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i--~~~~~~p-----~~r~qkieNv~~ 102 (120)
.++.+++ .|+++|++|||++. .+..|+|+++||+||+.||+|+|++.++++ ++++++| ++|+|++|||+.
T Consensus 278 ~~~~e~~-~q~k~f~~WiN~~~--~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~ 354 (513)
T 1rt8_A 278 PFDAEGE-REARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNY 354 (513)
T ss_dssp ---CHHH-HHHHHHHHHHHHTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHH
T ss_pred hhcchhH-HHHHHHHHHHHhcC--CCCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHH
Confidence 3555665 69999999999983 456899999999999999999996654444 4455445 689999999999
Q ss_pred HHHHHHhCCCeEeccCC
Q psy5020 103 ALNAINEDGIKLVNIDY 119 (120)
Q Consensus 103 aL~flk~~gi~lvnI~~ 119 (120)
||+|+++.|++++||++
T Consensus 355 al~~~~~~gv~lv~i~~ 371 (513)
T 1rt8_A 355 AVDLGKNQGFSLVGIQG 371 (513)
T ss_dssp HHHHHHHTTCCCTTCCH
T ss_pred HHHHHHHcCceeeccch
Confidence 99999999999999985
No 14
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.75 E-value=1.2e-18 Score=145.69 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=74.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc--ccc----CCCCcHHH
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK--FWI----RKPTNQHQ 95 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~----~~p~~r~q 95 (120)
....|.+.|+++|++|||++|.+.+ ..+.||++||+||++||+|+|.|+|++++ +.+ .+|++++|
T Consensus 5 ~~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~ 84 (513)
T 1rt8_A 5 FMHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFK 84 (513)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHH
T ss_pred CcCcccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHH
Confidence 4568999999999999999998763 24789999999999999999999998874 232 24789999
Q ss_pred HHhhHHHHHHHHHhCCC-eEeccCC
Q psy5020 96 FLENVTCALNAINEDGI-KLVNIDY 119 (120)
Q Consensus 96 kieNv~~aL~flk~~gi-~lvnI~~ 119 (120)
++||++.||+|++..|+ +++||++
T Consensus 85 ~~eNi~~~L~~~k~~g~~~l~~i~~ 109 (513)
T 1rt8_A 85 CIENNNVVINSAKAMGGISITNIGA 109 (513)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSSCCH
T ss_pred HHHHHHHHHHHHHHcCCCccCCcCH
Confidence 99999999999999999 9999975
No 15
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.73 E-value=3e-18 Score=142.92 Aligned_cols=87 Identities=24% Similarity=0.272 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCccc--ccccCCCC-cHHHHHhhH
Q psy5020 33 DIWVDIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKL--KFWIRKPT-NQHQFLENV 100 (120)
Q Consensus 33 ~~w~~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i--~~~~~~p~-~r~qkieNv 100 (120)
..|.+.|+++|++|||++|++.. ..|.||++||+||++||+|+|.|+|+++ ++++++|. ++++++||+
T Consensus 2 ~~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi 81 (506)
T 1pxy_A 2 SPGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENH 81 (506)
T ss_dssp -----CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHH
Confidence 35888999999999999998872 2478999999999999999999999998 45555554 489999999
Q ss_pred HHHHHHHHhCCCeEeccCC
Q psy5020 101 TCALNAINEDGIKLVNIDY 119 (120)
Q Consensus 101 ~~aL~flk~~gi~lvnI~~ 119 (120)
+.||+|++..|+++++|++
T Consensus 82 ~~~L~~~k~~g~~~~~i~~ 100 (506)
T 1pxy_A 82 TLCLNSAKAVGCSVVNIGT 100 (506)
T ss_dssp HHHHHHHHHTTCCCTTCCH
T ss_pred HHHHHHHHHhCCCcCCCCH
Confidence 9999999999999999964
No 16
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.43 E-value=2.7e-13 Score=102.18 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=72.1
Q ss_pred chhhHHH-HHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020 31 HEDIWVD-IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109 (120)
Q Consensus 31 ~~~~w~~-~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~ 109 (120)
....++. ..+..+..||+..|...=....|+.+.|+||++||+|++.|.+..+++++..+++.|+++||++.+|+++++
T Consensus 47 ~~~~ye~l~~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~ 126 (203)
T 1p5s_A 47 TLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG 126 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHH
Confidence 4445555 345779999999886431245699999999999999999999999988876778899999999999999999
Q ss_pred CCCeEecc
Q psy5020 110 DGIKLVNI 117 (120)
Q Consensus 110 ~gi~lvnI 117 (120)
.|+.-+.+
T Consensus 127 ~Gvp~~~l 134 (203)
T 1p5s_A 127 IGLPEIFH 134 (203)
T ss_dssp TTCCGGGC
T ss_pred cCCCcccc
Confidence 99876553
No 17
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.38 E-value=6.7e-13 Score=94.25 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=70.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhC
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINED 110 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~ 110 (120)
.++.+....+..++.||+..|... + -.|+.+.|+||++||+|++.+.+.++++++ .+.+.|+++||++.+|++++..
T Consensus 10 ~~~ky~~~~~~e~~~WIe~~l~~~-~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~-~~~~~f~~~eNI~~Fl~a~~~~ 86 (136)
T 1wyp_A 10 LAQKYDHQREQELREWIEGVTGRR-I-GNNFMDGLKDGIILCEFINKLQPGSVKKIN-ESTQNWHQLENIGNFIKAITKY 86 (136)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTCCC-C-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCC-CSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHhCCC-C-cHHHHHHHccHHhHHHHHHhhCCCCccccc-ccccchHHHHHHHHHHHHHHHc
Confidence 555666667789999999988643 3 368999999999999999999999998886 4667899999999999999999
Q ss_pred CCeEec
Q psy5020 111 GIKLVN 116 (120)
Q Consensus 111 gi~lvn 116 (120)
|+.-+.
T Consensus 87 Gv~~~~ 92 (136)
T 1wyp_A 87 GVKPHD 92 (136)
T ss_dssp TCCGGG
T ss_pred CCCccc
Confidence 988554
No 18
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=94.37 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=69.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhC
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINED 110 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~ 110 (120)
.++.+....+..+..||+..+... + -.|+.+.|+||++||+|++.+.+.++++++ .+.+.|+++||++.+|++++..
T Consensus 10 ~~~ky~~~~~~e~~~WIe~~l~~~-i-~~~l~~~L~DGvvLCkL~N~l~P~~v~kin-~~~~~f~~~eNI~~FL~a~~~~ 86 (146)
T 1wyn_A 10 LLSKYDPQKEAELRTWIEGLTGLS-I-GPDFQKGLKDGTILCTLMNKLQPGSVPKIN-RSMQNWHQLENLSNFIKAMVSY 86 (146)
T ss_dssp CCSCCCTTHHHHHHHHHHHHHCCC-C-CSCHHHHHHTTSHHHHHHHHHCTTSCSCCC-CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCCCccccc-cccccccHHHHHHHHHHHHHHc
Confidence 444555556778999999988643 3 368999999999999999999999998876 4678999999999999999999
Q ss_pred CCeEec
Q psy5020 111 GIKLVN 116 (120)
Q Consensus 111 gi~lvn 116 (120)
|+.-+.
T Consensus 87 Gv~~~~ 92 (146)
T 1wyn_A 87 GMNPVD 92 (146)
T ss_dssp TCCSSS
T ss_pred CCCccc
Confidence 988554
No 19
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=89.96 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhcccC--C----cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020 40 THTFKNWVNEHLKSVG--L----HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~--~----~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~ 113 (120)
++.+..||++.+.... . +.+.+.+.|+||++||+|++.+.+.++++++..|++.|+++||++.+|+++++.|+.
T Consensus 8 e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~~ 87 (121)
T 1wyr_A 8 EEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVE 87 (121)
T ss_dssp HHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence 3469999999753221 1 122378999999999999999999999998778899999999999999999998874
Q ss_pred E
Q psy5020 114 L 114 (120)
Q Consensus 114 l 114 (120)
+
T Consensus 88 ~ 88 (121)
T 1wyr_A 88 I 88 (121)
T ss_dssp C
T ss_pred c
Confidence 3
No 20
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.33 E-value=1.3e-12 Score=89.27 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeEec
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~lvn 116 (120)
++.++.||++.|+.. + -.|+.+.|+||++||+|++.+.+.++++++ .+++.|+++||++.+|+++++.|+.-+.
T Consensus 5 e~e~~~WIe~~l~~~-~-~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~ 78 (108)
T 1h67_A 5 ERQLRVWIEGATGRR-I-GDNFMDGLKDGVILCELINKLQPGSVQKVN-DPVQNWHKLENIGNFLRAIKHYGVKPHD 78 (108)
T ss_dssp SHHHHHHHHHHHSCC-C-CSCHHHHHHHCSHHHHHHHHHSTTSSTTCC-CTTSSHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCCCccccc-ccccchHHHHHHHHHHHHHHHcCCCccc
Confidence 456999999988643 3 368999999999999999999999999876 4667899999999999999999988554
No 21
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.8e-12 Score=92.84 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=71.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcc-----cchhhhhhhHHHHHHHHHHHcC---cccccccCCCCcHHHHHhhHHH
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHV-----EDLAKDLADGTKLCALVEILQK---RKLKFWIRKPTNQHQFLENVTC 102 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V-----~dL~~DL~DGv~Li~LLe~Lsg---~~i~~~~~~p~~r~qkieNv~~ 102 (120)
.+..+....+..+..||+..|... ++. .++.+.|+||++||+|++.+.+ .++++++ .+++.|+++||++.
T Consensus 10 ~~~ky~~~~e~e~~~WIe~~l~~~-l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn-~~~~~F~~~eNI~~ 87 (155)
T 1wym_A 10 IEKQYDADLEQILIQWITTQCRKD-VGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQ 87 (155)
T ss_dssp CCCSCCHHHHHHHHHHHHHHSSSC-CCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCC-CCCCHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHhCCC-CCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCccc-CCCccccHHHHHHH
Confidence 455666667778999999988643 433 5899999999999999999999 8999886 47789999999999
Q ss_pred HHHHHHhCCCeEecc
Q psy5020 103 ALNAINEDGIKLVNI 117 (120)
Q Consensus 103 aL~flk~~gi~lvnI 117 (120)
+|++++..|+.-+.+
T Consensus 88 FL~ac~~~Gv~~~~l 102 (155)
T 1wym_A 88 FLQAAERYGINTTDI 102 (155)
T ss_dssp HHHHHHHHTCCTTTC
T ss_pred HHHHHHHcCCCcccc
Confidence 999999999875443
No 22
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.29 E-value=4.2e-12 Score=90.91 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhcccCC----cccchhhhhhhHHHHHHHHHHHcC---cccc-cccCCCCcHHHHHhhHHHHHHHH
Q psy5020 36 VDIQTHTFKNWVNEHLKSVGL----HVEDLAKDLADGTKLCALVEILQK---RKLK-FWIRKPTNQHQFLENVTCALNAI 107 (120)
Q Consensus 36 ~~~Q~ktft~WiN~~L~~~~~----~V~dL~~DL~DGv~Li~LLe~Lsg---~~i~-~~~~~p~~r~qkieNv~~aL~fl 107 (120)
...++..+..||+..|...-. ...|+.+.|+||++||+|++.|.+ .+++ +++ .+++.|+++||++.+|+++
T Consensus 7 ~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin-~~~~~f~~~eNI~~FL~ac 85 (144)
T 1ujo_A 7 GEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN-PPSMVFKQMEQVAQFLKAA 85 (144)
T ss_dssp CCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSS-CCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeec-CCCchhHHHHHHHHHHHHH
Confidence 344566799999998865411 236899999999999999999999 7888 665 5778999999999999999
Q ss_pred HhCCCeEec
Q psy5020 108 NEDGIKLVN 116 (120)
Q Consensus 108 k~~gi~lvn 116 (120)
++.|+.-+.
T Consensus 86 ~~~Gv~~~~ 94 (144)
T 1ujo_A 86 EDYGVIKTD 94 (144)
T ss_dssp HHHTCCSSS
T ss_pred HHcCcCccc
Confidence 999987544
No 23
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.28 E-value=7.7e-12 Score=90.85 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhcccCCc-ccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeEecc
Q psy5020 41 HTFKNWVNEHLKSVGLH-VEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117 (120)
Q Consensus 41 ktft~WiN~~L~~~~~~-V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI 117 (120)
.....||+..|+.. ++ -.|+.+.|+||++||+|++.+.+.++++++..+++.|+++||++.+|+++++.|+.-+.+
T Consensus 14 ~e~~~WIe~~l~~~-l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~l 90 (159)
T 1p2x_A 14 DEAKKWIEECLGTD-LGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFH 90 (159)
T ss_dssp HHHHHHHHHHHTSC-CCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHhCCC-CCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcccc
Confidence 56999999998643 43 468999999999999999999999999887667889999999999999999999875543
No 24
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=85.43 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhh--cccC---Ccccch-hhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCC
Q psy5020 40 THTFKNWVNEHL--KSVG---LHVEDL-AKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGI 112 (120)
Q Consensus 40 ~ktft~WiN~~L--~~~~---~~V~dL-~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi 112 (120)
+..+..||+..+ ...+ .+-+++ .+.|+||++||+|++.+.+.++++++..|++.|+++||++.+|+++++ .|+
T Consensus 14 ~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~ 93 (126)
T 2l3g_A 14 AEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL 93 (126)
T ss_dssp HHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence 345899999973 3322 134566 589999999999999999999999887899999999999999999999 886
Q ss_pred eE
Q psy5020 113 KL 114 (120)
Q Consensus 113 ~l 114 (120)
.+
T Consensus 94 ~l 95 (126)
T 2l3g_A 94 ET 95 (126)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 25
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=99.23 E-value=2e-11 Score=85.86 Aligned_cols=78 Identities=15% Similarity=0.351 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhcccC--Ccccchh-hhhhhHHHHHHHHHHHcCccccc-ccCCCC-cHHHHHhhHHHHHHHHHhCC
Q psy5020 37 DIQTHTFKNWVNEHLKSVG--LHVEDLA-KDLADGTKLCALVEILQKRKLKF-WIRKPT-NQHQFLENVTCALNAINEDG 111 (120)
Q Consensus 37 ~~Q~ktft~WiN~~L~~~~--~~V~dL~-~DL~DGv~Li~LLe~Lsg~~i~~-~~~~p~-~r~qkieNv~~aL~flk~~g 111 (120)
++.++++++|+|.++.+.+ ..|+|+. .+++||+.+|.||+.+.++.+.. ...++. ++.++.+|+++|++++++.|
T Consensus 6 ~i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG 85 (124)
T 1wjo_A 6 SGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIG 85 (124)
T ss_dssp CSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3456789999999998766 4799999 99999999999999999998854 234555 78999999999999999999
Q ss_pred CeE
Q psy5020 112 IKL 114 (120)
Q Consensus 112 i~l 114 (120)
+.+
T Consensus 86 ~~~ 88 (124)
T 1wjo_A 86 ARV 88 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 875
No 26
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.09 E-value=9.7e-11 Score=87.25 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccC-------CCCcHHHHHhhHH
Q psy5020 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIR-------KPTNQHQFLENVT 101 (120)
Q Consensus 31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~-------~p~~r~qkieNv~ 101 (120)
.+.++...+ ..+..||+..+...-....|+.+.|+||++||+|++.+.+..++ +++. .+++.|+++||++
T Consensus 19 ~a~~y~~~~-~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~ 97 (190)
T 2rr8_A 19 VAYEYLCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI 97 (190)
T ss_dssp HHHHHHHHH-HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHH
T ss_pred HHHhhcHHH-HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHH
Confidence 566666666 88999999988643223468999999999999999999998774 4432 2567899999999
Q ss_pred HHHHHHHhCCCeEec
Q psy5020 102 CALNAINEDGIKLVN 116 (120)
Q Consensus 102 ~aL~flk~~gi~lvn 116 (120)
.+|+++++.|+.-+.
T Consensus 98 ~FL~ac~~~Gvp~~~ 112 (190)
T 2rr8_A 98 QWLNAMDEIGLPKIF 112 (190)
T ss_dssp HHHHGGGGTTCCSTT
T ss_pred HHHHHHHHcCCCccc
Confidence 999999999987543
No 27
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.06 E-value=2.6e-10 Score=85.31 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcccCCc-ccchhhhhhhHHHHHHHHHHHcCcccc--cccC-------CCCcHHHHHhhHHHHHHHHHhCC
Q psy5020 42 TFKNWVNEHLKSVGLH-VEDLAKDLADGTKLCALVEILQKRKLK--FWIR-------KPTNQHQFLENVTCALNAINEDG 111 (120)
Q Consensus 42 tft~WiN~~L~~~~~~-V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~-------~p~~r~qkieNv~~aL~flk~~g 111 (120)
....||+..++. .++ ..|+.+.|+||++||+|++.|.+..+| +++. .+++.|++++||+.+|+++++.|
T Consensus 51 e~~~WIe~~lg~-~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~G 129 (193)
T 3i6x_A 51 EAKRWMEACLGE-DLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIG 129 (193)
T ss_dssp HHHHHHHHHHSS-CCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcC
Confidence 688999998864 343 458999999999999999999998885 4432 35678999999999999999999
Q ss_pred CeEec
Q psy5020 112 IKLVN 116 (120)
Q Consensus 112 i~lvn 116 (120)
+.-+.
T Consensus 130 vp~~~ 134 (193)
T 3i6x_A 130 LPKIF 134 (193)
T ss_dssp CCGGG
T ss_pred CCccc
Confidence 87543
No 28
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.83 E-value=1.3e-08 Score=71.22 Aligned_cols=71 Identities=17% Similarity=0.406 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL 114 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l 114 (120)
++....|||..|... ++-+ ++|+||+.+|+|++.|.+.++| +.+-++++.++.++|+....+.+++.||.-
T Consensus 7 r~ElL~WIN~~L~~~---~~ki-E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k 79 (123)
T 2qjz_A 7 RHDMLAWINESLQLN---LTKI-EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 79 (123)
T ss_dssp HHHHHHHHHHHHTCC---CCCG-GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCC---CchH-HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 456899999988543 3222 6899999999999999999988 665479999999999999999999999863
No 29
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.6e-08 Score=72.51 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020 39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL 114 (120)
Q Consensus 39 Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l 114 (120)
+++....|||..|... +.-+ ++|+||+.+|+|++.|-+..+| +.+-++++.++.++|+....+.+++.||.-
T Consensus 23 sr~ElL~WIN~~L~~~---~~ki-E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k 96 (159)
T 1wyo_A 23 SRHDMLAWVNDSLHLN---YTKI-EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK 96 (159)
T ss_dssp CHHHHHHHHHHHSCCC---CSSG-GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHCCC---Cchh-hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 5667999999988533 3222 6899999999999999999888 655479999999999999999999998863
No 30
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=98.48 E-value=1.7e-07 Score=72.46 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhcccCCc-ccchhhhhhhHHHHHHHHHHHcCcccc------cccCCCCcHHHHHhhHHHHHHHHHhCCC
Q psy5020 40 THTFKNWVNEHLKSVGLH-VEDLAKDLADGTKLCALVEILQKRKLK------FWIRKPTNQHQFLENVTCALNAINEDGI 112 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~-V~dL~~DL~DGv~Li~LLe~Lsg~~i~------~~~~~p~~r~qkieNv~~aL~flk~~gi 112 (120)
++.+.+|+|.++...+.. |+|+.++++||..+|.|+..+.+..++ .+...+...-...+|+..|++.+++.||
T Consensus 170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi 249 (275)
T 1aoa_A 170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGC 249 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence 677999999999877754 999999999999999999999998543 1222344456788999999999998887
Q ss_pred e
Q psy5020 113 K 113 (120)
Q Consensus 113 ~ 113 (120)
.
T Consensus 250 ~ 250 (275)
T 1aoa_A 250 R 250 (275)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=98.47 E-value=2.6e-07 Score=63.58 Aligned_cols=71 Identities=34% Similarity=0.455 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++. ..-......+|+..|++..++ .||.
T Consensus 9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~---~~l~~~~~~~n~~~af~~Ae~~lgi~ 81 (116)
T 1wyl_A 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEP---SELQGLGALEATAWALKVAENELGIT 81 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCC---SSGGGCCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCH---HHhccCCHHHHHHHHHHHHHHHcCCc
Confidence 457899999999876 5789999999999999999999999987753 122234678999999999987 7885
No 32
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.6e-07 Score=63.89 Aligned_cols=71 Identities=18% Similarity=0.418 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~ 113 (120)
++...+|||.++... +..|+|+.++++||..+|.|+..+.++.++.-.-.+ ...++|+..|++..++.||.
T Consensus 11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~---~~~~~n~~~af~~a~~LGi~ 82 (119)
T 2d89_A 11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP---QDIKENNKKAYDGFASIGIS 82 (119)
T ss_dssp HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT---TCSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc---cCHHHHHHHHHHHHHHhCCC
Confidence 457899999999876 478999999999999999999999998775321223 34689999999998888875
No 33
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=98.41 E-value=3.6e-07 Score=64.00 Aligned_cols=71 Identities=13% Similarity=0.329 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++.+.+|||.++... +..|+|+.++++||..+|.|+..+.++-++.- .-......+|+..|++..++ .||.
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~---~l~~~~~~~n~~~af~~Ae~~lgip 81 (128)
T 2d87_A 9 KQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYG---QLSPQNRRQNFEVAFSSAETHADCP 81 (128)
T ss_dssp HHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCST---TSCSSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHH---HcCccCHHHHHHHHHHHHHHcCCCC
Confidence 467899999999876 57899999999999999999999999877431 12234568999999999997 5773
No 34
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.39 E-value=5.4e-07 Score=75.78 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=56.8
Q ss_pred HHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCc-HHHHHhhHHHHHHHH-Hh
Q psy5020 43 FKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTN-QHQFLENVTCALNAI-NE 109 (120)
Q Consensus 43 ft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~-r~qkieNv~~aL~fl-k~ 109 (120)
-..|++.-. ... .++.|+.+.|+||+.||.|++.|.+..++ +++..|++ .|++++||+.+|+++ ++
T Consensus 10 ~~~Wl~~~~-~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~ 88 (587)
T 3ky9_A 10 CTHWLIQCR-VLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEK 88 (587)
T ss_dssp HHHHHHHTT-CSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHH
Confidence 567999732 121 24789999999999999999999999885 55555665 699999999999999 77
Q ss_pred CCCe
Q psy5020 110 DGIK 113 (120)
Q Consensus 110 ~gi~ 113 (120)
.|+.
T Consensus 89 ~g~~ 92 (587)
T 3ky9_A 89 FGLK 92 (587)
T ss_dssp TCCC
T ss_pred cCCC
Confidence 8875
No 35
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=98.38 E-value=4e-07 Score=63.15 Aligned_cols=69 Identities=20% Similarity=0.406 Sum_probs=56.9
Q ss_pred HHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 42 TFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 42 tft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.- .-......+|+..|++..++ .||.
T Consensus 13 ~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~---~l~~~~~~~n~~~af~~Ae~~lgi~ 83 (121)
T 2d88_A 13 KLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKELGIS 83 (121)
T ss_dssp HHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTT---TSCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHH---HcCccCHHHHHHHHHHHHHHHcCCC
Confidence 5789999999775 57899999999999999999999999877431 12234568999999999985 8885
No 36
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=98.38 E-value=4.7e-07 Score=61.69 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~ 113 (120)
++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-.-.+ ....+|+..|++..+ +.||.
T Consensus 5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~lgi~ 77 (109)
T 1bkr_A 5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK---SNAHYNLQNAFNLAEQHLGLT 77 (109)
T ss_dssp HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT---TCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCc---CCHHHHHHHHHHHHHHHcCCC
Confidence 567899999998765 478999999999999999999999998775322223 356899999999997 57875
No 37
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=98.28 E-value=4.4e-07 Score=62.66 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~ 113 (120)
++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-. -......+|+..|++..+ +.||.
T Consensus 10 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~---l~~~~~~~n~~~af~~Ae~~lgi~ 82 (118)
T 1bhd_A 10 EKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDK---VVKMSPIERLEHAFSKAQTYLGIE 82 (118)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHH---HHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHH---hCcCCHHHHHHHHHHHHHHHcCCC
Confidence 567899999999876 478999999999999999999999998775311 112345899999999997 67875
No 38
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=98.28 E-value=6.7e-07 Score=62.49 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~ 113 (120)
++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-.-.+ ....+|++.|++..+ +.||.
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~Lgi~ 81 (127)
T 1wyq_A 9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK---CNAHYNLQNAFNLAEKELGLT 81 (127)
T ss_dssp THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS---SCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc---CCHHHHHHHHHHHHHHHcCCC
Confidence 356899999998765 478999999999999999999999998775311122 345789999999998 57875
No 39
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.25 E-value=1.6e-06 Score=66.14 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++.+.+|+|.++. +..|+|+.++++||..+|.|+..+.+..++.+. +...-..++|+..|++.+++ .||.
T Consensus 145 ~~~LL~W~~~~~~--~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~--~l~~~~~~~n~~~a~~~A~~~lGi~ 215 (245)
T 2wa7_A 145 KQRLLGWIQNKIP--YLPITNFNQNWQDGKALGALVDSCAPGLCPDWE--SWDPQKPVDNAREAVQQADDWLGVP 215 (245)
T ss_dssp HHHHHHHHHHHST--TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGG--GSCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCC--CCCCCCCcccchhhHHHHHHHHHHCcccccccc--ccCcccHHHHHHHHHHHHHHhCCCC
Confidence 5689999999985 468999999999999999999999998875442 22334678999999999998 8886
No 40
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.17 E-value=2.3e-06 Score=66.66 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++.+.+|||.++. +..|+|+.++++||..+|.|+..+.+.-++.+.. -......+|+..|++..++ .||.
T Consensus 172 k~~LL~W~n~~~~--~~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~--l~~~~~~~n~~~Af~~Ae~~lGi~ 242 (272)
T 3hoc_A 172 KQRLLGWIQNKLP--QLPITNFSRDWQSGRALGALVDSCAPGLCPDWDS--WDASKPVTNAREAMQQADDWLGIP 242 (272)
T ss_dssp HHHHHHHHHHHCT--TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG--SCTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhCC--CCCCCChhhcccchHHHHHHHHHhCcccccchhh--cCccCHHHHHHHHHHHHHHhCCCC
Confidence 6789999999874 5789999999999999999999999988854431 2234679999999999998 8884
No 41
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.12 E-value=1.1e-06 Score=66.80 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
.++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.+..++.-. -..-...+|+..|++.+++ .||.
T Consensus 134 ~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~---l~~~~~~~n~~~a~~~a~~~lGi~ 207 (245)
T 1sh5_A 134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNK---VYRQTNLENLDQAFSVAERDLGVT 207 (245)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHH---HHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHH---cccCCHHHHHHHHHHHHHHhCCCC
Confidence 3567999999999765 578999999999999999999999988775311 1123468999999999996 8875
No 42
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.07 E-value=1.2e-05 Score=61.56 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++.+.+|||.++... +..|+|+.++++||..+|.|+..+.+..++.-.-.+ -...+|+..|++.+++ .||.
T Consensus 142 ~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~---~~~~~n~~~a~~~A~~~lGi~ 214 (254)
T 1wku_A 142 KEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRK---DDPIGNLNTAFEVAEKYLDIP 214 (254)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCT---TCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccCc---CCHHHHHHHHHHHHHHHcCCC
Confidence 567999999988654 468999999999999999999999998775322223 3578999999999986 7886
No 43
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.07 E-value=3.6e-06 Score=66.33 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020 39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK 113 (120)
Q Consensus 39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~ 113 (120)
.++.+.+|||.++... +..|+|+.++++||..+|.|+..+.+.-++.-.-.+. ...+|+..|++.++ +.||.
T Consensus 190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~---~~~~N~~~Af~~Ae~~LGi~ 263 (296)
T 3f7p_A 190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ---TNLENLDQAFSVAERDLGVT 263 (296)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS---CHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc---cHHHHHHHHHHHHHHhCCCC
Confidence 3567999999999765 4789999999999999999999999887653111233 46889999999994 68875
No 44
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.01 E-value=7e-06 Score=62.50 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCccccccc-CCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWI-RKPTNQHQFLENVTCALNAIN-EDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~-~~p~~r~qkieNv~~aL~flk-~~gi~ 113 (120)
++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.+..++.-. ..+. ...+|+..|++.++ +.||.
T Consensus 137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---~~~~n~~~a~~~A~~~lGi~ 210 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---SATQRLEHAFNIARYQLGIE 210 (246)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---CHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhcccC---CHHHHHHHHHHHHHHhCCCC
Confidence 567999999999876 478999999999999999999999987764211 1122 35789999999998 68886
No 45
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.97 E-value=9.1e-06 Score=65.03 Aligned_cols=70 Identities=17% Similarity=0.345 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++.+.+|+|.++. +..|+|+.++++||..||.|+..+.++.++.+.. -..-..++|+..|++.+++ .||.
T Consensus 142 k~~LL~W~~~~~~--~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~--l~~~~~~~n~~~Af~~Ae~~lGip 212 (347)
T 4b7l_A 142 KQRLLGWIQNKIP--YLPITNFNQNWQDGKALGALVDSCAPGLCPDWES--WDPQKPVDNAREAMQQADDWLGVP 212 (347)
T ss_dssp HHHHHHHHHHHCT--TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG--SCTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhCC--CcccCCCCCCccchHHHHHHHHHhCCccccchhh--cCcCCHHHHHHHHHHHHHHhcCCC
Confidence 5679999999974 4679999999999999999999999987764432 2234568899999999987 6875
No 46
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.0004 Score=48.60 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-cccCCCCcHHHHHhhHHHH-HHHHHhCCCeE
Q psy5020 37 DIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCA-LNAINEDGIKL 114 (120)
Q Consensus 37 ~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-~~~~~p~~r~qkieNv~~a-L~flk~~gi~l 114 (120)
+.+.+..-+|++. + ....++.|+..||.||+.+.+++...-++-+. .-+.+..+...|+.|++.. ..+++..|+++
T Consensus 14 ~ee~~el~~WL~~-l-~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~l 91 (127)
T 2ee7_A 14 EEALHQLYLWVDN-I-PLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSV 91 (127)
T ss_dssp HHHHHHHHHHHHH-S-CCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCCC
T ss_pred HHHHHHHHHHHHc-C-CCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCCC
Confidence 4466788999996 4 34457899999999999999999999987654 2234677899999999998 48999988876
No 47
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=97.20 E-value=0.00011 Score=63.61 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020 40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~ 113 (120)
++.+..|||.++... +..|+|+.++++||..+|.|+..+.|..++.-.-.| -...+|+..|++.+++ .||.
T Consensus 123 ~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~---~~~~~n~~~a~~~a~~~lg~~ 195 (863)
T 1sjj_A 123 KEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK---DDPLTNLNTAFDVAEKYLDIP 195 (863)
T ss_dssp TTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS---CCCGGGCTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCC---CCHHHHHHHHHHHHHHhCCCC
Confidence 346899999988654 468999999999999999999999998775421122 2357899999999986 7875
No 48
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0034 Score=43.85 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIK 113 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~ 113 (120)
+..+..|+|+.|...=.. .+++++|...|++++.+-|. +| +..-++++....+.|....-+.+.+.||.
T Consensus 12 R~elL~WiN~~L~~n~~k----iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~ 82 (127)
T 2qjx_A 12 RTELLTWLNGLLNLNYKK----IEECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFSRHGIE 82 (127)
T ss_dssp HHHHHHHHHHHHTCCCCS----GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCccH----HHHccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 457999999988533123 55678999999999999865 43 44447889999999999999999998886
No 49
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=96.87 E-value=0.0054 Score=47.77 Aligned_cols=71 Identities=17% Similarity=0.408 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL 114 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l 114 (120)
+..+..|||..|. .+ ++ -.+++++|...|+|+..|-+..+| +..-++++....++|....-+.+++.||..
T Consensus 17 R~elL~WiN~~L~-~~--~~-kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k 89 (268)
T 2r8u_A 17 RHDMLAWINESLQ-LN--LT-KIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89 (268)
T ss_dssp HHHHHHHHHHHHT-CC--CC-CGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhc-CC--cc-hHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 3569999999885 33 32 346788999999999999988765 555578999999999999999999988864
No 50
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.86 E-value=0.0056 Score=43.72 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020 40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL 114 (120)
Q Consensus 40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l 114 (120)
+..+..|||+.|. .+ ++ -.+++++|...|+|++.|-| .++ +..=+++.....++|....-+.+++.||.-
T Consensus 8 R~eLL~WiN~~L~-~n--~t-kIE~l~sGAaYCQlmD~lfg-~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k 79 (145)
T 4abo_I 8 RQELLAWINQVTS-LG--LT-RIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDK 79 (145)
T ss_dssp HHHHHHHHHHHHT-CC--CC-SGGGGGGSHHHHHHHHHHHC-CSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcC-CC--cc-hHHHccccHHHHHHHHHHhc-CcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4568999999874 33 22 24578899999999999985 444 444478999999999999999999988764
No 51
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=95.20 E-value=0.043 Score=39.45 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-----cccCCC-CcHHHHHhhHHHHHHHHHh
Q psy5020 39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-----FWIRKP-TNQHQFLENVTCALNAINE 109 (120)
Q Consensus 39 Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-----~~~~~p-~~r~qkieNv~~aL~flk~ 109 (120)
...++..|+|+. .- ..++. -++||.||+.|.++|..+.++.+. ++...+ ....-++.|+...++-+.+
T Consensus 10 ~~~aLl~W~~tf-~~-~~~~~-~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 83 (164)
T 1wix_A 10 LCDSLIIWLQTF-KT-ASPCQ-DVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS 83 (164)
T ss_dssp HHHHHHHHHTTC-CC-SSCCC-SHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CC-CCCcC-cHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence 456899999994 22 23554 478999999999999999998653 222222 2345577888888776654
No 52
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=37.74 E-value=33 Score=23.26 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhhhh-hhHH------HHHHHHHHHcCcccccccCCCCcHHHH-HhhHHHHHHH
Q psy5020 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDL-ADGT------KLCALVEILQKRKLKFWIRKPTNQHQF-LENVTCALNA 106 (120)
Q Consensus 35 w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL-~DGv------~Li~LLe~Lsg~~i~~~~~~p~~r~qk-ieNv~~aL~f 106 (120)
-.+.|.+.+..|+..+ .+..+.+++.|. ..|. -|-.||+.+....+....-.-..|+-. ..-+-..++.
T Consensus 24 sl~~Q~~~~~~~a~~~---~g~~~~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRl~R~~~~~~~~~~~ 100 (169)
T 3g13_A 24 SYKSQVQYYTDMIKKN---KEWVLADIYADEAITGTQVTKREDFQRMINDCMNGEIDMVFTKSISRFARNTLDTLKYVRM 100 (169)
T ss_dssp SHHHHHHHHHHHHHTC---TTEEEEEEEEEEC------CCSHHHHHHHHHHHTTCCSEEEESCHHHHCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC---CCCeEEEEEeeCCccCCCcCCCHHHHHHHHHHHcCCCcEEEEEeccccccChHHHHHHHHH
Confidence 3667999999999763 234445555554 2443 367888888766543211111112222 1122233455
Q ss_pred HHhCCCeEeccC
Q psy5020 107 INEDGIKLVNID 118 (120)
Q Consensus 107 lk~~gi~lvnI~ 118 (120)
+.+.||.++.+.
T Consensus 101 l~~~gv~l~~~~ 112 (169)
T 3g13_A 101 LKERNIAVYFED 112 (169)
T ss_dssp HHTTTCEEEETT
T ss_pred HHHcCCEEEEec
Confidence 678999998764
No 53
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=34.92 E-value=38 Score=23.05 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHH-----HHHHHHHHHcCcccc-----cccCCCCcHHHHHhhHHHHH
Q psy5020 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGT-----KLCALVEILQKRKLK-----FWIRKPTNQHQFLENVTCAL 104 (120)
Q Consensus 35 w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv-----~Li~LLe~Lsg~~i~-----~~~~~p~~r~qkieNv~~aL 104 (120)
-.+.|...+..|+..+ |..+ .++.|...|. -|-.||+.+..+.+. +..+-.+...+.++
T Consensus 19 sl~~Q~~~l~~~~~~~----g~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRL~R~~~~~l~------ 87 (154)
T 3lhk_A 19 DLERQIQLIKSYAEEN----GWDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVIIAYPDRLTRFGFETLK------ 87 (154)
T ss_dssp HHHHHHHHHHHHHHHT----TCCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEESSHHHHCSSCHHHHH------
T ss_pred CHHHHHHHHHHHHHHC----CCEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEEEeCCcccccHHHHHH------
Confidence 4677999999998763 4455 6666665664 488888877655432 11111232233332
Q ss_pred HHHHhCCCeEeccC
Q psy5020 105 NAINEDGIKLVNID 118 (120)
Q Consensus 105 ~flk~~gi~lvnI~ 118 (120)
.++++.||.++.+.
T Consensus 88 ~~l~~~gv~~~~~~ 101 (154)
T 3lhk_A 88 EFFKSYGTEIVIIN 101 (154)
T ss_dssp HHHHHTTCEEEESC
T ss_pred HHHHHCCCEEEEEe
Confidence 66889999998765
No 54
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=33.77 E-value=26 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHhCCCeEec
Q psy5020 97 LENVTCALNAINEDGIKLVN 116 (120)
Q Consensus 97 ieNv~~aL~flk~~gi~lvn 116 (120)
-.|+..|.++|++.||.++.
T Consensus 104 ~rNv~~a~~~L~~~gI~i~a 123 (159)
T 2f9z_C 104 ARNVEAVKKHLKDFGIKLLA 123 (159)
T ss_dssp HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCcEEE
Confidence 37999999999999999874
No 55
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=26.32 E-value=32 Score=22.07 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhCCCeEeccC
Q psy5020 98 ENVTCALNAINEDGIKLVNID 118 (120)
Q Consensus 98 eNv~~aL~flk~~gi~lvnI~ 118 (120)
+++..|++||++.|+.+.=++
T Consensus 76 ~~~~~ai~~L~~~~v~vEvl~ 96 (106)
T 3dhx_A 76 QDTQAAIAWLQEHHVKVEVLG 96 (106)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEee
Confidence 578999999999999886554
No 56
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=23.33 E-value=1.3e+02 Score=20.09 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhhhhh-------hHHHHHHHHHHHcCcc--cc-----cccCCCCcHHHHHhhH
Q psy5020 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLA-------DGTKLCALVEILQKRK--LK-----FWIRKPTNQHQFLENV 100 (120)
Q Consensus 35 w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~-------DGv~Li~LLe~Lsg~~--i~-----~~~~~p~~r~qkieNv 100 (120)
-.+.|...+..|+..+ +..+..++.|.. +=--|-.||+.+..+. +. ...+-.+.. .-+
T Consensus 23 sl~~Q~~~l~~~a~~~----g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~----~~~ 94 (167)
T 3guv_A 23 SLEAQKSRMKAFAIYN----DYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNA----ADV 94 (167)
T ss_dssp GHHHHHHHHHHHHHHT----TCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSH----HHH
T ss_pred CHHHHHHHHHHHHHhC----CCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCCH----HHH
Confidence 4677999999998763 444444554431 2235788888776543 32 222223332 223
Q ss_pred HHHHHHHHhCCCeEeccC
Q psy5020 101 TCALNAINEDGIKLVNID 118 (120)
Q Consensus 101 ~~aL~flk~~gi~lvnI~ 118 (120)
-..++.|++.||.++.+.
T Consensus 95 ~~~~~~l~~~gv~l~~~~ 112 (167)
T 3guv_A 95 LSTLQIMQDYGVNLICVE 112 (167)
T ss_dssp HHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHHHCCCEEEEee
Confidence 334566788999998765
No 57
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=22.70 E-value=40 Score=22.13 Aligned_cols=76 Identities=13% Similarity=0.293 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccchhhhhh-hH-----HHHHHHHHHHcCccccc-----ccCCCCcHHHHHhhHHHHH
Q psy5020 36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLA-DG-----TKLCALVEILQKRKLKF-----WIRKPTNQHQFLENVTCAL 104 (120)
Q Consensus 36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~-DG-----v~Li~LLe~Lsg~~i~~-----~~~~p~~r~qkieNv~~aL 104 (120)
.+.|.+.+..|+..+ |..+..++.|-. .| --|-.||+.+..+++.. ..+-.+...+ -+...+
T Consensus 23 l~~Q~~~l~~~a~~~----g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R~~~~---~~~~~~ 95 (138)
T 3bvp_A 23 IDEQIDRLTKYAEAM----GWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLDRLSRSVRD---TLYLVK 95 (138)
T ss_dssp HHHHHHHHHHHHHHT----TCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHHHHCSCHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHC----CCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCCcccccHHH---HHHHHH
Confidence 466888899998763 444555555542 33 45888888876554422 1111222111 133344
Q ss_pred HHHHhCCCeEeccC
Q psy5020 105 NAINEDGIKLVNID 118 (120)
Q Consensus 105 ~flk~~gi~lvnI~ 118 (120)
+.+++.||.++.++
T Consensus 96 ~~l~~~gv~l~~~~ 109 (138)
T 3bvp_A 96 DVFTKNKIDFISLN 109 (138)
T ss_dssp HTTGGGTCEEEETT
T ss_pred HHHHHCCCEEEEec
Confidence 56778899998764
Done!