RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5020
(120 letters)
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 94.9 bits (236), Expect = 1e-26
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGL--HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTN 92
++ Q + +W N +L G + DL +D+ DG L +++++ K++ P N
Sbjct: 15 GLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKN 74
Query: 93 QHQFLENVTCALNAINEDGIKLVNID 118
+ Q +EN+ LN + GI + +
Sbjct: 75 RSQMIENIDACLNFLAAKGINIQGLS 100
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 97.3 bits (242), Expect = 3e-26
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPT 91
+ W Q TF W N HL+ G +E++ +D +G KL L+E++ +L K
Sbjct: 21 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP-RPDKGK 79
Query: 92 NQHQFLENVTCALNAINEDGIKLVNID 118
+ + NV AL+ I G+KLV+I
Sbjct: 80 MRFHKIANVNKALDFIASKGVKLVSIG 106
Score = 25.7 bits (56), Expect = 4.5
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 31 HEDIWVDIQTHTFKNWVNEHL-KSVGLHVEDLAKDLADGTKLCALV 75
+ W ++V++ DG LCAL+
Sbjct: 133 DISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALI 178
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 97.3 bits (242), Expect = 5e-26
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 19 EGHAAKG----MQIKGHEDIWVDIQTHTFKNWVNEHLK---------SVGLHVEDLAKDL 65
EG A G + +G + + + + + F NW+N+ L+ + + +DL K +
Sbjct: 1 EGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAV 60
Query: 66 ADGTKLCALVEILQKRKL--KFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
DG LC ++ + + + +K EN+ ALN+ + G +VNI
Sbjct: 61 GDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIG 115
Score = 34.2 bits (78), Expect = 0.005
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 45 NWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRK------PTNQHQFL 97
W N HL++ G + + + D+ D L+ + + K + N+ L
Sbjct: 175 RWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDL 234
Query: 98 ENVTCALNAINEDGIK 113
+ L ++ G +
Sbjct: 235 KRAESMLQQADKLGCR 250
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 96.0 bits (238), Expect = 2e-25
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 8 LSQIGMKARSPEGHAAKGMQIKGHE-------DIWVDIQTHTFKNWVNEHLKSVGLHVED 60
L + RS G + G + E D +Q TF WVN+HL H+ D
Sbjct: 36 LGKTQRSRRSGGGAGSNGSVLDPAERAVIRIADERDRVQKKTFTKWVNKHLIKAQRHISD 95
Query: 61 LAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
L +DL DG L +L+E+L L K + L+NV AL+ + +KLVNI
Sbjct: 96 LYEDLRDGHNLISLLEVLSGDSLP--REKGRMRFHKLQNVQIALDYLRHRQVKLVNIR 151
Score = 25.5 bits (55), Expect = 5.3
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 28 IKGHEDIWVDIQTHTFKNWVNEHL-KSVGLHVEDLAKDLADGTKLCALV 75
I+ W + GL ++ DG A++
Sbjct: 179 IQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 227
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 91.2 bits (226), Expect = 6e-24
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKP 90
+ W IQ +TF W NEHLK V + +L DL+DG +L AL+E+L ++++ + + ++P
Sbjct: 14 DAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP 73
Query: 91 TNQHQFLENVTCALNAINEDGIKLVNID 118
T + LENV+ AL ++ + IKLV+ID
Sbjct: 74 TFRQMQLENVSVALEFLDRESIKLVSID 101
Score = 26.1 bits (57), Expect = 3.1
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALV 75
+ +G +D W+ + + + + ++ DG L ALV
Sbjct: 131 WEDEGDDDAKKQTPKQRLLGWIQNKIPYLP--ITNFNQNWQDGKALGALV 178
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 87.6 bits (217), Expect = 9e-24
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF--WIRKPTN 92
+++ T +VN+HL + L V +L ADG L L+ +L+ + + P +
Sbjct: 19 KLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDS 78
Query: 93 QHQFLENVTCALNAINEDGIKLVNID 118
Q + NV+ A + + G++
Sbjct: 79 FEQKVLNVSFAFELMQDGGLEKPKPR 104
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 89.7 bits (222), Expect = 4e-23
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 17 SPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVE 76
+ + + + W IQ +TF W NEHLK V + +L DL+DG +L AL+E
Sbjct: 26 TRDAEMPATEKDLAEDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLE 85
Query: 77 ILQKRKLKF-WIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
+L ++K+ ++PT + LENV+ AL ++ + IKLV+ID
Sbjct: 86 VLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSID 128
Score = 26.9 bits (59), Expect = 1.4
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF 85
+ E+ W+ L + + + ++D G L ALV+
Sbjct: 158 WDEEEDEEAKKQTPKQRLLGWIQNKLPQLP--ITNFSRDWQSGRALGALVDSCAPGLCPD 215
Query: 86 WIRKPTNQHQFLENVTCALN 105
W + + + N A+
Sbjct: 216 W--DSWDASKPVTNAREAMQ 233
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 91.1 bits (225), Expect = 8e-23
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPT 91
+ W Q TF W N HL+ G +E++ +D DG KL L+E++ +L +
Sbjct: 2 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKP-ERGK 60
Query: 92 NQHQFLENVTCALNAINEDGIKLVNID 118
+ + NV AL+ I G+KLV+I
Sbjct: 61 MRVHKISNVNKALDFIASKGVKLVSIG 87
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 87.8 bits (217), Expect = 9e-22
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 35 WVDIQTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEILQKRKL-- 83
+ + F +N +L + H L + + DG LC L+ + +
Sbjct: 4 GIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDE 63
Query: 84 -KFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
++ N + EN T LN+ G +VNI
Sbjct: 64 RAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIG 99
Score = 60.5 bits (146), Expect = 4e-12
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL---KFWI 87
ED+ ++ W+N + +V ++ +D+ +G L +++ + +
Sbjct: 269 TEDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASK 326
Query: 88 RKPTNQHQFLENVTCALNAINEDGIKLVNID 118
+ +EN + + LVN+
Sbjct: 327 PPIKMPFRKVENCNQVIKIGKQLKFSLVNVA 357
Score = 35.4 bits (81), Expect = 0.002
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 40 THTFKNWVNEHLKS--VGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFL 97
W+N HLK V + + DL D L+ +L + +
Sbjct: 154 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERA 213
Query: 98 ENV 100
E V
Sbjct: 214 ELV 216
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 81.6 bits (201), Expect = 3e-20
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 32 EDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKP 90
D+Q TF WVN G H+E+L DL DG +L L+E L +KL K
Sbjct: 10 SYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE--KG 67
Query: 91 TNQHQFLENVTCALNAINEDGIKLVNID 118
+ + L NV AL + + + LVNI
Sbjct: 68 STRVHALNNVNKALRVLQNNNVDLVNIG 95
Score = 27.6 bits (61), Expect = 0.93
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLK 84
+ + +WV + ++ ++V + +DG L AL+ +
Sbjct: 123 VMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFD 182
Query: 85 FWIRKPTNQHQFLENVTCALN-AINEDGI 112
+ + + A N A + GI
Sbjct: 183 WNSVVSQQSA--TQRLEHAFNIARYQLGI 209
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 81.6 bits (201), Expect = 3e-20
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 32 EDIWVDIQTHTFKNWVNEHL-----KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFW 86
D +Q TF WVN+HL H+ DL +DL DG L +L+E+L L
Sbjct: 6 FDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSL--P 63
Query: 87 IRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
K + L+NV AL+ + +KLVNI
Sbjct: 64 REKGRMRFHKLQNVQIALDYLRHRQVKLVNIR 95
Score = 25.3 bits (55), Expect = 6.2
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 41 HTFKNWVNEHL-KSVGLHVEDLAKDLADGTKLCALV 75
W + GL ++ DG A++
Sbjct: 136 EKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 171
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 72.8 bits (178), Expect = 2e-16
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 35 WVDIQTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEIL------Q 79
+ + F +N L + + DG L L+ +
Sbjct: 9 INEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDE 68
Query: 80 KRKLKFWIRKPTNQHQFLENVTCALNAINEDG-IKLVNID 118
+ K KP + + +EN +N+ G I + NI
Sbjct: 69 RVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIG 108
Score = 60.1 bits (145), Expect = 6e-12
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 3 SDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLA 62
+ ++ + E + D + + F W+N V + D
Sbjct: 250 LNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLNSLD--VTPSIHDFF 307
Query: 63 KDLADGTKLCALVEILQKRKLKF-------WIRKPTNQHQFLENVTCALNAINEDGIKLV 115
+L DG L + + + + + + +EN A++ G LV
Sbjct: 308 NNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLV 367
Query: 116 NID 118
I
Sbjct: 368 GIQ 370
Score = 34.7 bits (79), Expect = 0.004
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 45 NWVNEHLKSVG--LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
W N HLK+ V + +KD++DG L+ L P L+
Sbjct: 168 RWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRA---PLQTTDVLQRAEQ 224
Query: 103 ALNAINEDGIK 113
L + +
Sbjct: 225 VLQNAEKLDCR 235
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 43.8 bits (103), Expect = 2e-06
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
K W+ E L + + L +G L LV+ Q KL Q + +N+
Sbjct: 61 KKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKF 120
Query: 104 LNAINEDGIKLVNI 117
L+ I+ G+ +
Sbjct: 121 LDFIHGIGLPEIFH 134
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 42.2 bits (99), Expect = 4e-06
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
K W+ E L + + L +G L LV+ Q KL Q + +N+
Sbjct: 17 KKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKF 76
Query: 104 LNAINEDGIKLVNI 117
L+ I+ G+ +
Sbjct: 77 LDFIHGIGLPEIFH 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-05
Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 48/139 (34%)
Query: 1 MTSDELRLSQIGMKARSPEGHAAKGM-QIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVE 59
+ D L + SP M I +Q + K N HL + G VE
Sbjct: 323 ILEDSL---ENNEGVPSP-------MLSISNLTQ--EQVQDYVNK--TNSHLPA-GKQVE 367
Query: 60 DLAKDLADGTK----------LCALVEILQKRK---------LKFWIRKPTNQHQFLENV 100
++ L +G K L L L+K K + F RK ++FL V
Sbjct: 368 -IS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-V 423
Query: 101 TC---------ALNAINED 110
A + IN+D
Sbjct: 424 ASPFHSHLLVPASDLINKD 442
Score = 35.8 bits (82), Expect = 0.002
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 25 GMQIKGHEDIWVD-IQT--HTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCAL-VEILQK 80
G Q G+ D + + ++ T+ V + +K + +L + D K+ + IL+
Sbjct: 161 GGQ--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE- 217
Query: 81 RKLKFWIRKPTNQH--QFLENVTCALNAI 107
W+ P+N +L ++ + I
Sbjct: 218 -----WLENPSNTPDKDYLLSIPISCPLI 241
Score = 28.9 bits (64), Expect = 0.41
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 25/94 (26%)
Query: 1 MTSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVED 60
+ DEL S GM A +P G A E + + V K G VE
Sbjct: 1797 VPRDELGRSNYGMIAINP-GRVAASF---SQEAL---------QYVVERVGKRTGWLVE- 1842
Query: 61 LAKD--------LADGTK--LCALVEILQKRKLK 84
+ A G L + +L KL+
Sbjct: 1843 IVNYNVENQQYVAA-GDLRALDTVTNVLNFIKLQ 1875
Score = 27.7 bits (61), Expect = 1.2
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 23/88 (26%)
Query: 43 FKNWVNEHLKSVGLHVEDLAKDLADGTK-----LCALVEILQKRKLKFWIRKPTNQ---- 93
FK +NEH S E K L T+ L L+E LK P +
Sbjct: 1707 FKE-INEHSTSYTFRSE---KGLLSATQFTQPAL-TLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 94 HQFL-ENVTCALNAIN-----EDGIKLV 115
H L E AL ++ E +++V
Sbjct: 1762 HS-LGEY--AALASLADVMSIESLVEVV 1786
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 38.1 bits (89), Expect = 7e-05
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 44 KNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
+ W+ +G ++ L DG LC L+ LQ ++ + P LEN+
Sbjct: 9 RVWIEGATGRRIG---DNFMDGLKDGVILCELINKLQPGSVQK-VNDPVQNWHKLENIGN 64
Query: 103 ALNAINEDGIK 113
L AI G+K
Sbjct: 65 FLRAIKHYGVK 75
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 38.0 bits (88), Expect = 1e-04
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 44 KNW----VNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR---KLKFWIRKPTNQHQF 96
W + L +G L LV L +K P+ +
Sbjct: 15 VEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQ 74
Query: 97 LENVTCALNAINEDGIK 113
+E V L A + G+
Sbjct: 75 MEQVAQFLKAAEDYGVI 91
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 37.2 bits (86), Expect = 4e-04
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF---------WIRKPTNQH 94
K W+ L +L + L +G L L + + +
Sbjct: 31 KRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHF 90
Query: 95 QFLENVTCALNAINEDGIKLVNI 117
+ +NV LNA++E G+ +
Sbjct: 91 RHTDNVIQWLNAMDEIGLPKIFY 113
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 35.7 bits (82), Expect = 0.001
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 44 KNWVNEHLKSVGLH----VEDLAKDLADGTKLCALVEILQKRKLKF--WIRKPTNQHQFL 97
W+ + E+ L DGT LC L+ L I+ T + +
Sbjct: 23 IQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQM 82
Query: 98 ENVTCALNAINEDGIKLVNI 117
E ++ L A GI +I
Sbjct: 83 EQISQFLQAAERYGINTTDI 102
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 35.2 bits (81), Expect = 0.001
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 44 KNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
+ W+ +G + L DG LC + LQ +K I + T LEN+
Sbjct: 23 REWIEGVTGRRIG---NNFMDGLKDGIILCEFINKLQPGSVKK-INESTQNWHQLENIGN 78
Query: 103 ALNAINEDGIK 113
+ AI + G+K
Sbjct: 79 FIKAITKYGVK 89
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 35.8 bits (82), Expect = 0.001
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF---------WIRKPTNQH 94
K W+ L +L + L +G L L + + +
Sbjct: 53 KRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHF 112
Query: 95 QFLENVTCALNAINEDGIKLVNI 117
+ +NV LNA++E G+ +
Sbjct: 113 RHTDNVIQWLNAMDEIGLPKIFY 135
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 34.9 bits (80), Expect = 0.001
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 59 EDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKL 114
E L L +G LC L+ L ++ + P + + N+ L +++
Sbjct: 33 EFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEI 88
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 33.8 bits (77), Expect = 0.004
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 47 VNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNA 106
+ K++ L L DG LC L+E L ++ +P ++ + L N+ L
Sbjct: 27 LESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRG 86
Query: 107 INE 109
Sbjct: 87 CGA 89
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 31.0 bits (70), Expect = 0.053
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 44 KNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
+ W+ S+G D K L DGT LC L+ LQ + I + LEN++
Sbjct: 23 RTWIEGLTGLSIG---PDFQKGLKDGTILCTLMNKLQPGSVPK-INRSMQNWHQLENLSN 78
Query: 103 ALNAINEDGIKLVNI 117
+ A+ G+ V++
Sbjct: 79 FIKAMVSYGMNPVDL 93
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta
deaminase motif, zinc coordination, ionsitol
hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo
sapiens}
Length = 403
Score = 31.4 bits (70), Expect = 0.063
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 73 ALVEILQKRKLKFWIRKPTNQHQF 96
L K L W+ KPT Q QF
Sbjct: 376 RLFTAFIKAGLGAWVEKPTEQDQF 399
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton,
acetylation, cell cycle, cell division, cytoplasm,
mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP:
a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A
3gjo_A 1yib_A 1yig_A
Length = 268
Score = 27.1 bits (59), Expect = 1.4
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 45 NWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-----QKRKLKFWIRKPTNQHQFLEN 99
W+NE L+ +E L G C +++L +K+KF + +H++++N
Sbjct: 22 AWINESLQLNLTKIE----QLCSGAAYCQFMDMLFPGSIALKKVKF---QAKLEHEYIQN 74
Query: 100 VTCALNAINEDGI-KLVNIDYL 120
G+ K++ +D L
Sbjct: 75 FKILQAGFKRMGVDKIIPVDKL 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 49 EHLK----SVGLHVEDLAKDLADGTKLCALVE 76
+ LK S+ L+ +D A LA + A +E
Sbjct: 20 QALKKLQASLKLYADDSAPALA----IKATME 47
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology
domain, pleckst homology domain, C1 domain,
guanine-nucleotide releasing FA metal-binding; 2.73A
{Homo sapiens} PDB: 2d86_A
Length = 587
Score = 25.4 bits (55), Expect = 5.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 58 VEDLAKDLADGTKLCALVEILQ 79
V +LA+ L DG LC L+ L
Sbjct: 33 VCELAQALRDGVLLCQLLNNLL 54
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
homology domain, microtubule plus END, +TIP, protein
binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB:
1pa7_A 1ueg_A 3co1_A 1v5k_A
Length = 123
Score = 24.9 bits (54), Expect = 6.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 45 NWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-----QKRKLKFWIRKPTNQHQFLEN 99
W+NE L+ +E L G C +++L +K+KF + +H++++N
Sbjct: 12 AWINESLQLNLTKIE----QLCSGAAYCQFMDMLFPGSIALKKVKF---QAKLEHEYIQN 64
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding
protein, guanosine, TP0319, transport protein; HET: GMP;
1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Length = 318
Score = 25.4 bits (56), Expect = 6.1
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 22 AAK--GMQIKGHEDIWVDI-QTHTFKNWVNEH------LKSVGLHVEDLAKDLADGT 69
A+ + + I VD Q ++ +K + E ++K DG+
Sbjct: 206 EARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGS 262
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}
SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Length = 364
Score = 24.8 bits (55), Expect = 8.0
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 45 NWVNEHLKSVGLHVEDLAKDLADGTKLCAL-----VEILQK 80
NW+ H K+ + V +++ A L A E LQ+
Sbjct: 121 NWIKSHSKNFDVEVSNISDTTA----LIAFQGPKAQETLQE 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,849,785
Number of extensions: 97192
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 55
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)