RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5020
(120 letters)
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 78.1 bits (192), Expect = 9e-19
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 39 QTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEILQKRKL---KFW 86
+ F +N +L + H L + + DG LC L+ + +
Sbjct: 2 EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAIN 61
Query: 87 IRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
++ N + EN T LN+ G +VNI
Sbjct: 62 TKRVLNPWERNENHTLCLNSAKAVGCSVVNIG 93
Score = 55.8 bits (134), Expect = 6e-11
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKP 90
ED+ ++ W+N + +V ++ +D+ +G L +++ + + KP
Sbjct: 264 EDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKP 321
Query: 91 TNQH--QFLENVTCALNAINEDGIKLVNID 118
+ + +EN + + LVN+
Sbjct: 322 PIKMPFRKVENCNQVIKIGKQLKFSLVNVA 351
Score = 33.8 bits (77), Expect = 0.003
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 45 NWVNEHLKSVGLH--VEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
W+N HLK G V + + DL D L+ +L + LE
Sbjct: 153 KWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDP---ATLDAKDPLERAEL 209
Query: 103 ALNAINEDGIK 113
L+ K
Sbjct: 210 VLSHAERMNCK 220
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 70.8 bits (173), Expect = 1e-17
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 35 WVDIQTHTFKNWVNEHLKS-----VGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRK 89
+Q TF WVN+HL H+ DL +DL DG L +L+E+L L K
Sbjct: 2 RDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE--K 59
Query: 90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
+ L+NV AL+ + +KLVNI
Sbjct: 60 GRMRFHKLQNVQIALDYLRHRQVKLVNIR 88
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 65.0 bits (158), Expect = 2e-15
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 35 WVDIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQ 93
D+Q TF WVN G H+E+L DL DG +L L+E L +KL K + +
Sbjct: 5 REDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE--KGSTR 62
Query: 94 HQFLENVTCALNAINEDGIKLVNID 118
L NV AL + + + LVNI
Sbjct: 63 VHALNNVNKALRVLQNNNVDLVNIG 87
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 68.5 bits (167), Expect = 2e-15
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 16/98 (16%)
Query: 37 DIQTHTFKNWVNEHLK---------SVGLHVEDLAKDLADGTKLCALVEILQKRKL---- 83
+ + F +N L + + DG L L+ +
Sbjct: 3 EEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERV 62
Query: 84 --KFWIRKPTNQHQFLENVTCALNAINED-GIKLVNID 118
K KP + + +EN +N+ GI + NI
Sbjct: 63 LNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIG 100
Score = 58.5 bits (141), Expect = 7e-12
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 37 DIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-------KFWIRK 89
+ + F W+N V + D +L DG L + + +
Sbjct: 276 EREARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGD 333
Query: 90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
+ + +EN A++ G LV I
Sbjct: 334 EMMRFKAVENCNYAVDLGKNQGFSLVGIQ 362
Score = 36.9 bits (85), Expect = 2e-04
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 45 NWVNEHLKSVG--LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
W N HLK+ V + +KD++DG L+ L P L+
Sbjct: 160 RWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRA---PLQTTDVLQRAEQ 216
Query: 103 ALNAINEDGIK 113
L + +
Sbjct: 217 VLQNAEKLDCR 227
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 58.1 bits (140), Expect = 2e-12
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
K W+ E L + + L +G L LV+ Q KL Q + +N+
Sbjct: 17 KKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKF 76
Query: 104 LNAINEDGIKLVNID 118
L+ I+ G+ +
Sbjct: 77 LDFIHGIGLPEIFHF 91
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 57.3 bits (138), Expect = 2e-12
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 37 DIQTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEILQKRKL--KF 85
+ + + F NW+N+ L++ + + +DL K + DG LC ++ + + +
Sbjct: 3 EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERA 62
Query: 86 WIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
+K EN+ ALN+ + G +VNI
Sbjct: 63 INKKKLTPFIIQENLNLALNSASAIGCHVVNIG 95
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 46.9 bits (111), Expect = 1e-08
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 45 NWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRK------PTNQHQFL 97
W N HL++ G + + + D+ D L+ + + K + N+ L
Sbjct: 16 RWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDL 75
Query: 98 ENVTCALNAINEDGIKLV 115
+ L ++ G +
Sbjct: 76 KRAESMLQQADKLGCRQF 93
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 45.4 bits (107), Expect = 7e-08
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 45 NWVNEHLKSVGLHVEDL---AKDLADGTKLCALVEILQKRKLKF--WIRKPTNQHQFLEN 99
NWVN L G K ++ + L++ +Q + + + N
Sbjct: 14 NWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNN 73
Query: 100 VTCALNAINEDGIKLVNID 118
A++ G V
Sbjct: 74 AKYAVSMARRIGA-RVYAL 91
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 33.7 bits (77), Expect = 0.001
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 44 KNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
+ W+ +G ++ L DG LC L+ LQ ++ + P LEN+
Sbjct: 9 RVWIEGATGRRIG---DNFMDGLKDGVILCELINKLQPGSVQK-VNDPVQNWHKLENIGN 64
Query: 103 ALNAINEDGIKLVNI 117
L AI G+K +I
Sbjct: 65 FLRAIKHYGVKPHDI 79
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 32.6 bits (74), Expect = 0.003
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 45 NWVNEHL-KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
W + GL ++ DG A++ + + LEN+ A
Sbjct: 13 LWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTN---LENLDQA 69
Query: 104 LNAINE 109
+
Sbjct: 70 FSVAER 75
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 32.6 bits (74), Expect = 0.004
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 43 FKNWVNEHLKS----VGLHVEDLAKDLADGTKLCALVEILQ---KRKLKFWIRKPTNQHQ 95
W+ L +G L LV L + +K P+ +
Sbjct: 14 LVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFK 73
Query: 96 FLENVTCALNAINEDGIKLVNI 117
+E V L A + G+ ++
Sbjct: 74 QMEQVAQFLKAAEDYGVIKTDM 95
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 28.8 bits (64), Expect = 0.076
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 45 NWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENV 100
W +++ + DG AL+ + + F K +N H L+N
Sbjct: 9 LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNA 65
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 27.4 bits (61), Expect = 0.28
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 45 NWVNEHLKSVGLHVEDLAK--DLADGTKLCALVEILQK-----RKLKFWIRKPTNQHQFL 97
W+NE L+ +L K L G C +++L +K+KF + +H+++
Sbjct: 10 AWINESLQL------NLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKF---QAKLEHEYI 60
Query: 98 ENVTCALNAINEDGIK 113
+N G+
Sbjct: 61 QNFKILQAGFKRMGVD 76
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima
[TaxId: 2336]}
Length = 107
Score = 24.7 bits (54), Expect = 1.9
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 75 VEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109
VE + RK + I+K + C + E
Sbjct: 42 VERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQE 76
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus
[TaxId: 63363]}
Length = 106
Score = 24.0 bits (52), Expect = 4.2
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 58 VEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
E + + + E R+L + I+K N FL + + + I
Sbjct: 27 FEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKI 86
Query: 118 D 118
D
Sbjct: 87 D 87
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.9 bits (51), Expect = 4.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 55 GLHVEDLAKDLADGTKLCALVEILQKRKLKFW 86
G H+E +A DL+ G + L QK+ +
Sbjct: 1 GSHME-MAGDLSAGFFMEELNTYRQKQGVVLK 31
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 24.0 bits (51), Expect = 6.3
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 21 HAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLAD 67
+ + ++ KG+ + H F G DLAK L +
Sbjct: 354 YLKELLKEKGYRVPYDGPSMHEFVAQ-----PPEGFRALDLAKGLLE 395
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 23.2 bits (50), Expect = 8.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 75 VEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109
+E +R+L + I K H L NV I+E
Sbjct: 39 LEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDE 73
>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus
[TaxId: 274]}
Length = 97
Score = 22.8 bits (49), Expect = 9.8
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 75 VEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE 109
VE L R+L + I K + V + +N+
Sbjct: 40 VEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVND 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 455,300
Number of extensions: 18895
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 29
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)